Started by upstream project "ProjectX_Commit" build number 302
originally caused by:
Started by remote host 18.33.1.199
Building remotely on reynolds in workspace /home1/jenkins/workspace/ProjectX_Commit/PX_ARC/debug_clang/buildnode/reynolds
> git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
> git config remote.acdl.url ssh://jenkins@acdl.mit.edu/home/svnroot/projectx.git/ # timeout=10
Pruning obsolete local branches
Cleaning workspace
> git rev-parse --verify HEAD # timeout=10
Resetting working tree
> git reset --hard # timeout=10
> git clean -fdx # timeout=10
Fetching upstream changes from ssh://jenkins@acdl.mit.edu/home/svnroot/projectx.git/
> git --version # timeout=10
using GIT_SSH to set credentials
> git -c core.askpass=true fetch --tags --progress ssh://jenkins@acdl.mit.edu/home/svnroot/projectx.git/ +refs/heads/*:refs/remotes/acdl/* --prune
Merging Revision d2c1a9b2ad867b7a43e68fbbb3be16c26d7baf1f (acdl/galbramc/develop) to acdl/develop, UserMergeOptions{mergeRemote='acdl', mergeTarget='develop', mergeStrategy='default', fastForwardMode='--ff'}
> git rev-parse acdl/develop^{commit} # timeout=10
> git config core.sparsecheckout # timeout=10
> git checkout -f acdl/develop
> git merge --ff d2c1a9b2ad867b7a43e68fbbb3be16c26d7baf1f # timeout=10
> git rev-parse HEAD^{commit} # timeout=10
Seen branch in repository acdl/allmaras/develop
Seen branch in repository acdl/apprentice
Seen branch in repository acdl/arthuang/develop
Seen branch in repository acdl/carlee/develop
Seen branch in repository acdl/develop
Seen branch in repository acdl/galbramc/bamg_metric
Seen branch in repository acdl/galbramc/develop
Seen branch in repository acdl/master
Seen branch in repository acdl/savithru/develop
Seen branch in repository acdl/yixuan/devclean
Seen branch in repository acdl/yixuan/develop
Seen 11 remote branches
Checking out Revision 98a3cf3b2a324f1fa46fd8f2d47fee720fcf4a0c (acdl/develop)
> git config core.sparsecheckout # timeout=10
> git checkout -f 98a3cf3b2a324f1fa46fd8f2d47fee720fcf4a0c
Using 'Changelog to branch' strategy.
[reynolds] $ /bin/bash -xe /tmp/hudson3708074213222923247.sh
+ /bin/bash -ex /home1/jenkins/workspace/ProjectX_Commit/PX_ARC/debug_clang/buildnode/reynolds/utils/jenkins/ProjectX_Commit.sh
++ hostname
+ [[ reynolds == \m\a\c\y\s\.\m\i\t\.\e\d\u ]]
++ uname -a
+ [[ Linux reynolds 3.13.0-77-generic #121-Ubuntu SMP Wed Jan 20 10:50:42 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux == \D\a\r\w\i\n* ]]
+ export PX_DIR=/home1/jenkins/workspace/ProjectX_Commit/PX_ARC/debug_clang/buildnode/reynolds
+ PX_DIR=/home1/jenkins/workspace/ProjectX_Commit/PX_ARC/debug_clang/buildnode/reynolds
+ BUILD=/home1/jenkins/workspace/ProjectX_Commit/PX_ARC/debug_clang/buildnode/reynolds/platforms/debug_clang
+ rm -rf /home1/jenkins/workspace/ProjectX_Commit/PX_ARC/debug_clang/buildnode/reynolds/platforms/debug_clang
+ source /home1/jenkins/workspace/ProjectX_Commit/PX_ARC/debug_clang/buildnode/reynolds/utils/jenkins/jenkins_env.sh
++ shopt -s nocasematch
+++ pwd
++ dir=/home1/jenkins/workspace/ProjectX_Commit/PX_ARC/debug_clang/buildnode/reynolds
+++ basename /home1/jenkins/workspace/ProjectX_Commit/PX_ARC/debug_clang/buildnode/reynolds
++ builddir=reynolds
+++ hostname
++ [[ reynolds == \r\e\y\n\o\l\d\s ]]
++ source /home1/jenkins/.madcap
+++ export PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/mnt/magichat/madcap_devel-9.0/bin/
+++ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/mnt/magichat/madcap_devel-9.0/bin/
+++ export RFI_KEY=6pxhqri,ctjIhjaPrf92n+CC2w3opXab78WB
+++ RFI_KEY=6pxhqri,ctjIhjaPrf92n+CC2w3opXab78WB
++ source /opt/intel/bin/iccvars.sh intel64
++ export PATH=/home1/jenkins/util/lcov/lcov/bin:/opt/intel/composer_xe_2015.1.133/bin/intel64:/opt/intel/composer_xe_2015.1.133/debugger/gdb/intel64_mic/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/mnt/magichat/madcap_devel-9.0/bin/
++ PATH=/home1/jenkins/util/lcov/lcov/bin:/opt/intel/composer_xe_2015.1.133/bin/intel64:/opt/intel/composer_xe_2015.1.133/debugger/gdb/intel64_mic/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/mnt/magichat/madcap_devel-9.0/bin/
++ export NLOPT_DIR=/home1/jenkins/util/NLOPT/nlopt-2.4.2/install
++ NLOPT_DIR=/home1/jenkins/util/NLOPT/nlopt-2.4.2/install
++ export LEDA_DIR=/home1/jenkins/util/LEDA/LEDA-6.3-free-fedora-core-8-64-g++-4.1.2-mt
++ LEDA_DIR=/home1/jenkins/util/LEDA/LEDA-6.3-free-fedora-core-8-64-g++-4.1.2-mt
++ env
+ make cmake
-- The C compiler identification is Clang 3.5.0
-- The CXX compiler identification is Clang 3.5.0
-- The Fortran compiler identification is GNU
-- Check for working C compiler: /usr/bin/clang-3.5
-- Check for working C compiler: /usr/bin/clang-3.5 -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/clang++-3.5
-- Check for working CXX compiler: /usr/bin/clang++-3.5 -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working Fortran compiler: /usr/bin/f95
-- Check for working Fortran compiler: /usr/bin/f95 -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /usr/bin/f95 supports Fortran 90
-- Checking whether /usr/bin/f95 supports Fortran 90 -- yes
Updating include/revision.h with:
git commit: 98a3cf3b2a324f1fa46fd8f2d47fee720fcf4a0c
git branch: (detached from 4b03ecd)
-- Looking for Fortran sgemm
-- Looking for Fortran sgemm - found
-- Looking for include file pthread.h
-- Looking for include file pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- A library with BLAS API found.
-- Looking for Fortran cheev
-- Looking for Fortran cheev - found
-- A library with LAPACK API found.
-- Looking for XOpenDisplay in /usr/lib/x86_64-linux-gnu/libX11.so;/usr/lib/x86_64-linux-gnu/libXext.so
-- Looking for XOpenDisplay in /usr/lib/x86_64-linux-gnu/libX11.so;/usr/lib/x86_64-linux-gnu/libXext.so - found
-- Looking for gethostbyname
-- Looking for gethostbyname - found
-- Looking for connect
-- Looking for connect - found
-- Looking for remove
-- Looking for remove - found
-- Looking for shmat
-- Looking for shmat - found
-- Looking for IceConnectionNumber in ICE
-- Looking for IceConnectionNumber in ICE - found
-- Found X11: /usr/lib/x86_64-linux-gnu/libX11.so
-- Found MPI_C: /usr/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libhwloc.so
-- Found MPI_CXX: /usr/lib/libmpi_cxx.so;/usr/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libhwloc.so
-- Found MPI_Fortran: /usr/lib/libmpi_f90.so;/usr/lib/libmpi_f77.so;/usr/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libhwloc.so
=================================
!!!! WARNING !!!!
The following unit tests are not compiled:
PXCVTAdaptMechanics2d_PXU
PXCVTBoundary1d_PXU
PXMoveMesh3d_PXU
PXQuadraticPatchKernel_PXU
PXCompressibleUtilsNew_PXU
---------------------------------
Could someone please fix or remove them?
The list can be modified in CMakeLists.txt in
the PX root directory
=================================
=================================
Setting MPIEXEC_MAX_NUMPROCS to the minimum required 4 processors.
=================================
-- Found OpenGL: /usr/lib/x86_64-linux-gnu/libGL.so
-- Configuring done
-- Generating done
-- Build files have been written to: /home1/jenkins/workspace/ProjectX_Commit/PX_ARC/debug_clang/buildnode/reynolds/platforms/debug_clang
+ make bamg TetGen Qhull
+ make all
Scanning dependencies of target StoreSVNRevision
[ 0%] Built target StoreSVNRevision
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Linking C static library ../lib/libPXEquationSet.a
[ 9%] Built target PXEquationSet
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Linking C static library ../../lib/libPXAdaptMechanics.a
[ 11%] Built target PXAdaptMechanics
Scanning dependencies of target PXCutCell3d
[ 11%] Building CXX object src/Grid/CutCell3D/CMakeFiles/PXCutCell3d.dir/PXNumberType.cpp.o
[ 11%] Building CXX object src/Grid/CutCell3D/CMakeFiles/PXCutCell3d.dir/PXIntersectionPoint3d.cpp.o
[ 11%] Building CXX object src/Grid/CutCell3D/CMakeFiles/PXCutCell3d.dir/PXConic.cpp.o
[ 13%] Building CXX object src/Grid/CutCell3D/CMakeFiles/PXCutCell3d.dir/PXPolynomial.cpp.o
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[ 13%] Building CXX object src/Grid/CutCell3D/CMakeFiles/PXCutCell3d.dir/PXBoundingBox3d.cpp.o
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[ 16%] Building CXX object src/Grid/CutCell3D/CMakeFiles/PXCutCell3d.dir/PXMerge3d.cpp.o
[ 16%] Building CXX object src/Grid/CutCell3D/CMakeFiles/PXCutCell3d.dir/PXCutCell3dPrintInfo.cpp.o
[ 16%] Building CXX object src/Grid/CutCell3D/CMakeFiles/PXCutCell3d.dir/PXReadWriteCutCell3d.cpp.o
[ 16%] Building CXX object src/Grid/CutCell3D/CMakeFiles/PXCutCell3d.dir/PXCutCell3dViz.cpp.o
[ 16%] Building CXX object src/Grid/CutCell3D/CMakeFiles/PXCutCell3d.dir/PXParallelCutCell3d.cpp.o
Linking CXX static library ../../../lib/libPXCutCell3d.a
[ 16%] Built target PXCutCell3d
Scanning dependencies of target PXGrid
[ 18%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXAttachmentMath.c.o
[ 18%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXBasis.c.o
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[ 18%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXCurvedMeshMaps.c.o
[ 18%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXCutCell.c.o
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[ 32%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXUnitGrids.c.o
Linking C static library ../../lib/libPXGrid.a
[ 32%] Built target PXGrid
Scanning dependencies of target PXReference
[ 32%] Building C object src/Reference/CMakeFiles/PXReference.dir/PXCoordinatesReference.c.o
[ 32%] Building C object src/Reference/CMakeFiles/PXReference.dir/PXMasterPolynomial.c.o
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Linking C static library ../../lib/libPXReference.a
[ 34%] Built target PXReference
Scanning dependencies of target PXLinearSolver
[ 34%] Building C object src/LinearSolver/CMakeFiles/PXLinearSolver.dir/PXASM_DG.c.o
[ 34%] Building C object src/LinearSolver/CMakeFiles/PXLinearSolver.dir/PXASM.c.o
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Linking C static library ../../lib/libPXLinearSolver.a
[ 39%] Built target PXLinearSolver
Scanning dependencies of target PXFundamentals
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Linking C static library ../../lib/libPXFundamentals.a
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[ 46%] Building C object src/Burgers/CMakeFiles/PXBurgers_objects.dir/PXBurgersStateFunctional.c.o
[ 46%] Building C object src/Burgers/CMakeFiles/PXBurgers_objects.dir/PXBurgersInviscid.c.o
[ 48%] Building C object src/Burgers/CMakeFiles/PXBurgers_objects.dir/PXBurgersViscous.c.o
[ 48%] Built target PXBurgers_objects
Scanning dependencies of target PXBurgers_shared
Linking C shared library ../../lib/PXBurgers.so
[ 48%] Built target PXBurgers_shared
Scanning dependencies of target PXCompressible_objects
[ 48%] Building C object src/Compressible/CMakeFiles/PXCompressible_objects.dir/PXCompressible.c.o
[ 48%] Building C object src/Compressible/CMakeFiles/PXCompressible_objects.dir/PXCompressibleInterface.c.o
[ 48%] Building C object src/Compressible/CMakeFiles/PXCompressible_objects.dir/PXCompressibleBCs.c.o
[ 48%] Building C object src/Compressible/CMakeFiles/PXCompressible_objects.dir/PXCompressibleFunction.c.o
[ 48%] Building C object src/Compressible/CMakeFiles/PXCompressible_objects.dir/PXCompressibleShock.c.o
[ 51%] Building C object src/Compressible/CMakeFiles/PXCompressible_objects.dir/PXCompressibleStateFunctional.c.o
[ 51%] Building C object src/Compressible/CMakeFiles/PXCompressible_objects.dir/PXEulerFlux.c.o
[ 51%] Building C object src/Compressible/CMakeFiles/PXCompressible_objects.dir/PXKOmega.c.o
[ 51%] Building C object src/Compressible/CMakeFiles/PXCompressible_objects.dir/PXSpalartAllmaras.c.o
[ 51%] Building C object src/Compressible/CMakeFiles/PXCompressible_objects.dir/PXViscous.c.o
[ 51%] Built target PXCompressible_objects
Scanning dependencies of target PXCompressible_shared
Linking C shared library ../../lib/PXCompressible.so
[ 51%] Built target PXCompressible_shared
Scanning dependencies of target PXCompressibleOliver_objects
[ 51%] Building C object src/CompressibleOliver/CMakeFiles/PXCompressibleOliver_objects.dir/PXCompressible.c.o
[ 51%] Building C object src/CompressibleOliver/CMakeFiles/PXCompressibleOliver_objects.dir/PXCompressibleBCs.c.o
[ 51%] Building C object src/CompressibleOliver/CMakeFiles/PXCompressibleOliver_objects.dir/PXCompressibleFunction.c.o
[ 53%] Building C object src/CompressibleOliver/CMakeFiles/PXCompressibleOliver_objects.dir/PXCompressibleShock.c.o
[ 53%] Building C object src/CompressibleOliver/CMakeFiles/PXCompressibleOliver_objects.dir/PXCompressibleStateFunctional.c.o
[ 53%] Building C object src/CompressibleOliver/CMakeFiles/PXCompressibleOliver_objects.dir/PXEulerFlux.c.o
[ 53%] Building C object src/CompressibleOliver/CMakeFiles/PXCompressibleOliver_objects.dir/PXKOmega.c.o
[ 53%] Building C object src/CompressibleOliver/CMakeFiles/PXCompressibleOliver_objects.dir/PXSpalartAllmaras.c.o
[ 53%] Building C object src/CompressibleOliver/CMakeFiles/PXCompressibleOliver_objects.dir/PXViscous.c.o
[ 53%] Built target PXCompressibleOliver_objects
Scanning dependencies of target PXCompressibleOliver_shared
Linking C shared library ../../lib/PXCompressibleOliver.so
[ 53%] Built target PXCompressibleOliver_shared
Scanning dependencies of target PXConjugateHeatTransfer_objects
[ 53%] Building C object src/ConjugateHeatTransfer/CMakeFiles/PXConjugateHeatTransfer_objects.dir/PXConjugateHeatTransfer.c.o
[ 53%] Building C object src/ConjugateHeatTransfer/CMakeFiles/PXConjugateHeatTransfer_objects.dir/__/Compressible/PXCompressible.c.o
[ 53%] Building C object src/ConjugateHeatTransfer/CMakeFiles/PXConjugateHeatTransfer_objects.dir/__/Compressible/PXCompressibleBCs.c.o
[ 55%] Building C object src/ConjugateHeatTransfer/CMakeFiles/PXConjugateHeatTransfer_objects.dir/__/Compressible/PXCompressibleFunction.c.o
[ 55%] Building C object src/ConjugateHeatTransfer/CMakeFiles/PXConjugateHeatTransfer_objects.dir/__/Compressible/PXCompressibleShock.c.o
[ 55%] Building C object src/ConjugateHeatTransfer/CMakeFiles/PXConjugateHeatTransfer_objects.dir/__/Compressible/PXCompressibleStateFunctional.c.o
[ 55%] Building C object src/ConjugateHeatTransfer/CMakeFiles/PXConjugateHeatTransfer_objects.dir/__/Compressible/PXEulerFlux.c.o
[ 55%] Building C object src/ConjugateHeatTransfer/CMakeFiles/PXConjugateHeatTransfer_objects.dir/__/Compressible/PXKOmega.c.o
[ 55%] Building C object src/ConjugateHeatTransfer/CMakeFiles/PXConjugateHeatTransfer_objects.dir/__/Compressible/PXSpalartAllmaras.c.o
[ 55%] Building C object src/ConjugateHeatTransfer/CMakeFiles/PXConjugateHeatTransfer_objects.dir/__/Compressible/PXViscous.c.o
Build was aborted
[WARNINGS] Skipping publisher since build result is ABORTED
clang: error: unable to execute command: Terminated
clang: error: clang frontend command failed due to signal (use -v to see invocation)
Ubuntu clang version 3.5.0-4ubuntu2~trusty2 (tags/RELEASE_350/final) (based on LLVM 3.5.0)
Target: x86_64-pc-linux-gnu
Thread model: posix
clang: note: diagnostic msg: PLEASE submit a bug report to http://bugs.debian.org/ and include the crash backtrace, preprocessed source, and associated run script.
Skipping Cobertura coverage report as build was not UNSTABLE or better ...
[xUnit] [INFO] - Starting to record.
[xUnit] [INFO] - Processing CTest-Version N/A (default)
clang: note: diagnostic msg:
********************
PLEASE ATTACH THE FOLLOWING FILES TO THE BUG REPORT:
Preprocessed source(s) and associated run script(s) are located at:
clang: note: diagnostic msg: /tmp/PXViscous-b33769.c
clang: note: diagnostic msg: /tmp/PXViscous-b33769.sh
clang: note: diagnostic msg:
********************
make[3]: *** [src/ConjugateHeatTransfer/CMakeFiles/PXConjugateHeatTransfer_objects.dir/__/Compressible/PXViscous.c.o] Error 254
make[2]: *** [src/ConjugateHeatTransfer/CMakeFiles/PXConjugateHeatTransfer_objects.dir/all] Error 2
make[1]: *** [all] Error 2
make: *** [default] Error 2
[xUnit] [INFO] - [CTest-Version N/A (default)] - No test report file(s) were found with the pattern 'platforms/debug_clang/Testing/**/Test.xml' relative to '/home1/jenkins/workspace/ProjectX_Commit/PX_ARC/debug_clang/buildnode/reynolds' for the testing framework 'CTest-Version N/A (default)'. Did you enter a pattern relative to the correct directory? Did you generate the result report(s) for 'CTest-Version N/A (default)'?
[xUnit] [WARNING] - No test reports found for the metric 'CTest' with the resolved pattern 'platforms/debug_clang/Testing/**/Test.xml'.
[xUnit] [INFO] - Skipping the metric tool processing.
[xUnit] [INFO] - There are errors when processing test results.
[xUnit] [INFO] - Skipping tests recording.
Warning: this build has no associated authentication, so build permissions may be lacking, and downstream projects which cannot even be seen by an anonymous user will be silently skipped
Finished: ABORTED
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