Started by upstream project "ProjectX_Commit" build number 302 originally caused by: Started by remote host 18.33.1.199 Building remotely on reynolds in workspace /home1/jenkins/workspace/ProjectX_Commit/PX_ARC/debug_gnu49/buildnode/reynolds > git rev-parse --is-inside-work-tree # timeout=10 Fetching changes from the remote Git repository > git config remote.acdl.url ssh://jenkins@acdl.mit.edu/home/svnroot/projectx.git/ # timeout=10 Pruning obsolete local branches Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 Fetching upstream changes from ssh://jenkins@acdl.mit.edu/home/svnroot/projectx.git/ > git --version # timeout=10 using GIT_SSH to set credentials > git -c core.askpass=true fetch --tags --progress ssh://jenkins@acdl.mit.edu/home/svnroot/projectx.git/ +refs/heads/*:refs/remotes/acdl/* --prune Merging Revision d2c1a9b2ad867b7a43e68fbbb3be16c26d7baf1f (acdl/galbramc/develop) to acdl/develop, UserMergeOptions{mergeRemote='acdl', mergeTarget='develop', mergeStrategy='default', fastForwardMode='--ff'} > git rev-parse acdl/develop^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f acdl/develop > git merge --ff d2c1a9b2ad867b7a43e68fbbb3be16c26d7baf1f # timeout=10 > git rev-parse HEAD^{commit} # timeout=10 Seen branch in repository acdl/allmaras/develop Seen branch in repository acdl/apprentice Seen branch in repository acdl/arthuang/develop Seen branch in repository acdl/carlee/develop Seen branch in repository acdl/develop Seen branch in repository acdl/galbramc/bamg_metric Seen branch in repository acdl/galbramc/develop Seen branch in repository acdl/master Seen branch in repository acdl/savithru/develop Seen branch in repository acdl/yixuan/devclean Seen branch in repository acdl/yixuan/develop Seen 11 remote branches Checking out Revision 98a3cf3b2a324f1fa46fd8f2d47fee720fcf4a0c (acdl/develop) > git config core.sparsecheckout # timeout=10 > git checkout -f 98a3cf3b2a324f1fa46fd8f2d47fee720fcf4a0c Using 'Changelog to branch' strategy. [reynolds] $ /bin/bash -xe /tmp/hudson3832648343953477132.sh + /bin/bash -ex /home1/jenkins/workspace/ProjectX_Commit/PX_ARC/debug_gnu49/buildnode/reynolds/utils/jenkins/ProjectX_Commit.sh ++ hostname + [[ reynolds == \m\a\c\y\s\.\m\i\t\.\e\d\u ]] ++ uname -a + [[ Linux reynolds 3.13.0-77-generic #121-Ubuntu SMP Wed Jan 20 10:50:42 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux == \D\a\r\w\i\n* ]] + export PX_DIR=/home1/jenkins/workspace/ProjectX_Commit/PX_ARC/debug_gnu49/buildnode/reynolds + PX_DIR=/home1/jenkins/workspace/ProjectX_Commit/PX_ARC/debug_gnu49/buildnode/reynolds + BUILD=/home1/jenkins/workspace/ProjectX_Commit/PX_ARC/debug_gnu49/buildnode/reynolds/platforms/debug_gnu49 + rm -rf /home1/jenkins/workspace/ProjectX_Commit/PX_ARC/debug_gnu49/buildnode/reynolds/platforms/debug_gnu49 + source /home1/jenkins/workspace/ProjectX_Commit/PX_ARC/debug_gnu49/buildnode/reynolds/utils/jenkins/jenkins_env.sh ++ shopt -s nocasematch +++ pwd ++ dir=/home1/jenkins/workspace/ProjectX_Commit/PX_ARC/debug_gnu49/buildnode/reynolds +++ basename /home1/jenkins/workspace/ProjectX_Commit/PX_ARC/debug_gnu49/buildnode/reynolds ++ builddir=reynolds +++ hostname ++ [[ reynolds == \r\e\y\n\o\l\d\s ]] ++ source /home1/jenkins/.madcap +++ export PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/mnt/magichat/madcap_devel-9.0/bin/ +++ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/mnt/magichat/madcap_devel-9.0/bin/ +++ export RFI_KEY=6pxhqri,ctjIhjaPrf92n+CC2w3opXab78WB +++ RFI_KEY=6pxhqri,ctjIhjaPrf92n+CC2w3opXab78WB ++ source /opt/intel/bin/iccvars.sh intel64 ++ export PATH=/home1/jenkins/util/lcov/lcov/bin:/opt/intel/composer_xe_2015.1.133/bin/intel64:/opt/intel/composer_xe_2015.1.133/debugger/gdb/intel64_mic/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/mnt/magichat/madcap_devel-9.0/bin/ ++ PATH=/home1/jenkins/util/lcov/lcov/bin:/opt/intel/composer_xe_2015.1.133/bin/intel64:/opt/intel/composer_xe_2015.1.133/debugger/gdb/intel64_mic/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/mnt/magichat/madcap_devel-9.0/bin/ ++ export NLOPT_DIR=/home1/jenkins/util/NLOPT/nlopt-2.4.2/install ++ NLOPT_DIR=/home1/jenkins/util/NLOPT/nlopt-2.4.2/install ++ export LEDA_DIR=/home1/jenkins/util/LEDA/LEDA-6.3-free-fedora-core-8-64-g++-4.1.2-mt ++ LEDA_DIR=/home1/jenkins/util/LEDA/LEDA-6.3-free-fedora-core-8-64-g++-4.1.2-mt ++ env + make cmake -- The C compiler identification is GNU 4.9.3 -- The CXX compiler identification is GNU 4.9.3 -- The Fortran compiler identification is GNU -- Check for working C compiler: /usr/bin/gcc-4.9 -- Check for working C compiler: /usr/bin/gcc-4.9 -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++-4.9 -- Check for working CXX compiler: /usr/bin/g++-4.9 -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working Fortran compiler: /usr/bin/gfortran-4.9 -- Check for working Fortran compiler: /usr/bin/gfortran-4.9 -- works -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Checking whether /usr/bin/gfortran-4.9 supports Fortran 90 -- Checking whether /usr/bin/gfortran-4.9 supports Fortran 90 -- yes Updating include/revision.h with: git commit: 98a3cf3b2a324f1fa46fd8f2d47fee720fcf4a0c git branch: (detached from 4b03ecd) -- Looking for Fortran sgemm -- Looking for Fortran sgemm - found -- Looking for include file pthread.h -- Looking for include file pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- A library with BLAS API found. -- Looking for Fortran cheev -- Looking for Fortran cheev - found -- A library with LAPACK API found. -- Looking for XOpenDisplay in /usr/lib/x86_64-linux-gnu/libX11.so;/usr/lib/x86_64-linux-gnu/libXext.so -- Looking for XOpenDisplay in /usr/lib/x86_64-linux-gnu/libX11.so;/usr/lib/x86_64-linux-gnu/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for IceConnectionNumber in ICE -- Looking for IceConnectionNumber in ICE - found -- Found X11: /usr/lib/x86_64-linux-gnu/libX11.so -- Found MPI_C: /usr/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libhwloc.so -- Found MPI_CXX: /usr/lib/libmpi_cxx.so;/usr/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libhwloc.so -- Found MPI_Fortran: /usr/lib/libmpi_f90.so;/usr/lib/libmpi_f77.so;/usr/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libhwloc.so ================================= !!!! WARNING !!!! The following unit tests are not compiled: PXCVTAdaptMechanics2d_PXU PXCVTBoundary1d_PXU PXMoveMesh3d_PXU PXQuadraticPatchKernel_PXU PXCompressibleUtilsNew_PXU --------------------------------- Could someone please fix or remove them? The list can be modified in CMakeLists.txt in the PX root directory ================================= ================================= Setting MPIEXEC_MAX_NUMPROCS to the minimum required 4 processors. ================================= -- Found OpenGL: /usr/lib/x86_64-linux-gnu/libGL.so -- Configuring done -- Generating done -- Build files have been written to: /home1/jenkins/workspace/ProjectX_Commit/PX_ARC/debug_gnu49/buildnode/reynolds/platforms/debug_gnu49 + make bamg TetGen Qhull + make all Scanning dependencies of target StoreSVNRevision [ 0%] Built target StoreSVNRevision Scanning dependencies of target PX [ 0%] Building C object src/CMakeFiles/PX.dir/PXAdapt.c.o [ 0%] Building C object src/CMakeFiles/PX.dir/PXAdaptMetric.c.o [ 0%] Building C object src/CMakeFiles/PX.dir/PXAnisotropicMetric.c.o [ 0%] Building C object src/CMakeFiles/PX.dir/PXAuxVariable.c.o [ 0%] Building C object src/CMakeFiles/PX.dir/PXBC.c.o [ 2%] Building C object src/CMakeFiles/PX.dir/PXCDAll.c.o [ 2%] Building C object src/CMakeFiles/PX.dir/PXDGSolver.c.o [ 2%] Building C object src/CMakeFiles/PX.dir/PXDynamic.c.o [ 2%] Building C object src/CMakeFiles/PX.dir/PXErrEst.c.o [ 2%] Building C object src/CMakeFiles/PX.dir/PXHDGSolver.c.o [ 2%] Building C object src/CMakeFiles/PX.dir/PXHDGOutputFunctional.c.o [ 2%] Building C object src/CMakeFiles/PX.dir/PXHPAdapt.c.o [ 4%] Building C object src/CMakeFiles/PX.dir/PXHPAdaptDirect.c.o [ 4%] Building C object src/CMakeFiles/PX.dir/PXInit.c.o [ 4%] Building C object src/CMakeFiles/PX.dir/PXLog.c.o [ 4%] Building C object src/CMakeFiles/PX.dir/PXOutput.c.o [ 4%] Building C object src/CMakeFiles/PX.dir/PXOutputFunctional.c.o [ 4%] Building C object src/CMakeFiles/PX.dir/PXOutputFunctionalTools.c.o [ 4%] Building C object src/CMakeFiles/PX.dir/PXRegionAttribute.c.o [ 6%] Building C object src/CMakeFiles/PX.dir/PXResidual.c.o [ 6%] Building C object src/CMakeFiles/PX.dir/PXResState.c.o [ 6%] Building C object src/CMakeFiles/PX.dir/PXSensitivity.c.o [ 6%] Building C object src/CMakeFiles/PX.dir/PXShockCapture.c.o [ 6%] Building C object src/CMakeFiles/PX.dir/PXSolutionTransfer.c.o [ 6%] Building C object src/CMakeFiles/PX.dir/PXSolver.c.o [ 9%] Building C object src/CMakeFiles/PX.dir/PXTime.c.o [ 9%] Building C object src/CMakeFiles/PX.dir/PXUnsteady.c.o Linking C static library ../lib/libPX.a [ 9%] Built target PX Scanning dependencies of target PXEquationSet [ 9%] Building C object src/CMakeFiles/PXEquationSet.dir/PXEquationSet.c.o Linking C static library ../lib/libPXEquationSet.a [ 9%] Built target PXEquationSet Scanning dependencies of target PXAdaptMechanics [ 9%] Building C object src/Adaptation/CMakeFiles/PXAdaptMechanics.dir/PXMetricAdapt1d.c.o [ 11%] Building C object src/Adaptation/CMakeFiles/PXAdaptMechanics.dir/PXMetricAdapt2d.c.o [ 11%] Building C object src/Adaptation/CMakeFiles/PXAdaptMechanics.dir/PXMetricAdapt3d.c.o [ 11%] Building C object src/Adaptation/CMakeFiles/PXAdaptMechanics.dir/PXWriteMesherFiles.c.o [ 11%] Building C object src/Adaptation/CMakeFiles/PXAdaptMechanics.dir/PXGridAnisoRefine.c.o [ 11%] Building C object src/Adaptation/CMakeFiles/PXAdaptMechanics.dir/PXElasticMesher.c.o Linking C static library ../../lib/libPXAdaptMechanics.a [ 11%] Built target PXAdaptMechanics Scanning dependencies of target PXGrid [ 13%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXAttachmentMath.c.o [ 13%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXBasis.c.o [ 13%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXCoordinates.c.o [ 13%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXCurvedMeshMaps.c.o [ 13%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXCutCell.c.o [ 13%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXCutCellTools2d.c.o [ 16%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXCutCell2dViz.c.o [ 16%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXCutQuad.c.o [ 16%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXDistanceFunction.c.o [ 16%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXDistanceFunctionSurfGrid.c.o [ 16%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXDistanceToSurface.c.o [ 16%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXGrid.c.o [ 16%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXGridAttachments.c.o [ 18%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXGridUniformRefine.c.o [ 18%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXIntersect.c.o [ 18%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXIntersect2d.c.o [ 18%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXIntersectTools2d.c.o [ 18%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXLinearElasticity.c.o [ 18%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXLinearElasticityLocalStiffness.c.o [ 18%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXMerge.c.o [ 20%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXMesh.c.o [ 20%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXMeshAttachment.c.o [ 20%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXMeshMetric.c.o [ 20%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXMeshOperation2d.c.o [ 20%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXMeshSize.c.o [ 20%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXModifyGrid.c.o [ 23%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXMoveMesh.c.o [ 23%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXNormal.c.o [ 23%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXParallelGrid.c.o [ 23%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXParallelGridAttachments.c.o [ 23%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXParallelMesh.c.o [ 23%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXPartition.c.o [ 23%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXPartitionMesh.c.o [ 25%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXQuad.c.o [ 25%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXQuadraticConic.c.o [ 25%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXReadWriteGrid.c.o [ 25%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXReadWriteMesh.c.o [ 25%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXSubMesh.c.o [ 25%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXSpline.c.o [ 25%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXTree.c.o [ 27%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXTriangulatePolygon.c.o [ 27%] Building C object src/Grid/CMakeFiles/PXGrid.dir/PXUnitGrids.c.o Linking C static library ../../lib/libPXGrid.a [ 27%] Built target PXGrid Scanning dependencies of target PXCutCell3d [ 27%] Building CXX object src/Grid/CutCell3D/CMakeFiles/PXCutCell3d.dir/PXNumberType.cpp.o [ 27%] Building CXX object src/Grid/CutCell3D/CMakeFiles/PXCutCell3d.dir/PXIntersectionPoint3d.cpp.o [ 27%] Building CXX object src/Grid/CutCell3D/CMakeFiles/PXCutCell3d.dir/PXConic.cpp.o [ 30%] Building CXX object src/Grid/CutCell3D/CMakeFiles/PXCutCell3d.dir/PXPolynomial.cpp.o [ 30%] Building CXX object src/Grid/CutCell3D/CMakeFiles/PXCutCell3d.dir/PXQuadPatch.cpp.o [ 30%] Building CXX object src/Grid/CutCell3D/CMakeFiles/PXCutCell3d.dir/PXIntersect3d.cpp.o [ 30%] Building CXX object src/Grid/CutCell3D/CMakeFiles/PXCutCell3d.dir/PXBoundingBox3d.cpp.o [ 30%] Building CXX object src/Grid/CutCell3D/CMakeFiles/PXCutCell3d.dir/PXCutQuad3d.cpp.o [ 30%] Building CXX object src/Grid/CutCell3D/CMakeFiles/PXCutCell3d.dir/PXCutBasis3d.cpp.o [ 30%] Building CXX object src/Grid/CutCell3D/CMakeFiles/PXCutCell3d.dir/PXBasicGeometry.cpp.o [ 32%] Building CXX object src/Grid/CutCell3D/CMakeFiles/PXCutCell3d.dir/PXCutCell3d.cpp.o [ 32%] Building CXX object src/Grid/CutCell3D/CMakeFiles/PXCutCell3d.dir/PXCutCellMetric3d.cpp.o [ 32%] Building CXX object src/Grid/CutCell3D/CMakeFiles/PXCutCell3d.dir/PXMerge3d.cpp.o Build was aborted [WARNINGS] Skipping publisher since build result is ABORTED g++-4.9: internal compiler error: Terminated (program cc1plus) Please submit a full bug report, with preprocessed source if appropriate. See for instructions. make[3]: *** [src/Grid/CutCell3D/CMakeFiles/PXCutCell3d.dir/PXMerge3d.cpp.o] Error 4 make[2]: *** [src/Grid/CutCell3D/CMakeFiles/PXCutCell3d.dir/all] Error 2 make[1]: *** [all] Error 2 make: *** [default] Error 2 Skipping Cobertura coverage report as build was not UNSTABLE or better ... [xUnit] [INFO] - Starting to record. [xUnit] [INFO] - Processing CTest-Version N/A (default) [xUnit] [INFO] - [CTest-Version N/A (default)] - No test report file(s) were found with the pattern 'platforms/debug_gnu49/Testing/**/Test.xml' relative to '/home1/jenkins/workspace/ProjectX_Commit/PX_ARC/debug_gnu49/buildnode/reynolds' for the testing framework 'CTest-Version N/A (default)'. Did you enter a pattern relative to the correct directory? Did you generate the result report(s) for 'CTest-Version N/A (default)'? [xUnit] [WARNING] - No test reports found for the metric 'CTest' with the resolved pattern 'platforms/debug_gnu49/Testing/**/Test.xml'. [xUnit] [INFO] - Skipping the metric tool processing. [xUnit] [INFO] - There are errors when processing test results. [xUnit] [INFO] - Skipping tests recording. Warning: this build has no associated authentication, so build permissions may be lacking, and downstream projects which cannot even be seen by an anonymous user will be silently skipped Finished: ABORTED