Changes

Summary

1. commenting out a currently unused function so i can pass dumb warning (details)
2. bah didnt comment out the unit test of the function i removed in last (details)
3. mesh edge struct is parallelized, and a 3D parallel unit mesh is added (details)
4. mesh edge struct is parallelized, and a 3D parallel unit mesh is added (details)
5. 1. PartitionMesh is ready. 2. CheckMesh now works with parallel mesh. 3. (details)
6. Added unit test for PXParallelCutCell3d.cpp so that the shell script can (details)
7. forgot to include Grid unit test (details)
8. bugfixes to the 3d distance function (surface grid & regular versions). (details)
9. parallelized grid data (details)
10. Unparallelize zerod coded, but need testing (details)
11. Unified adaptation in parallel now (partially) supported.  'Partially' (details)
12. Missing change to header file in previous commit (details)
13. Missed a couple warnings compiling with intel. (details)
14. Corrected bug in PXStateSmooth that woukd kick back an error for the (details)
15. Dummy commit to rerun tests (details)
16. 1) regenerated 3d_Periodic_TEST b/c existing .bc file did not make sense (details)
17. bugfix to 3D distance function.  Was going array out of bounds but (details)
18. Modified p+1 unsteady State 0 (initial condition) to use function if (details)
19. 3D intersection now parallel, and unparallelization working, with one (details)
20. git-svn-id: file:///home/svnroot/projectx/trunk@9949 (details)
21. updated weekly tests to use sunhu (details)
22. Cut cell 3d now works in parallel, at least for all the unit tests. Now (details)
23. Now cut cell works in parallel entirely...still need to add a regression (details)
24. Adding capability to compute a 'global' unsteady truth surrogate. (details)
25. nothing changed (details)
26. nothing commited (details)
27. Corrections to my previous commit (details)
28. Update to madcap script generated by PX (details)
29. Fixed a bug when testing PartitionMesh after compiling in serial; and a (details)
30. Utilities to extract states from a pxa (intended initially for (details)
31. added a new unified adaptation framework based on the vertex-based (details)
32. git-svn-id: file:///home/svnroot/projectx/trunk@9961 (details)
33. 1D adaptation with fixed fraction adaptation (PXAdaptHP) (details)
34. Modified 1d mesh modification (mesh operations in adaptation) to use (details)
35. 1. Now when MPI returns error, PX tells which line generates this error. (details)
36. 1. Now when MPI returns error, PX tells which line generates this error. (details)
37. Change the cutcell case to use one-level overlap ASM (details)
38. Now partition the mesh before cutting based on bounding box check (details)
39. Now partition the mesh before cutting based on bounding box check (details)
40. Added global minimum and maximum edge lengths for MADCAP/EPIC (details)
41. Timing is added into cutcell (details)
42. Fixed a bug in configure for cxxopt (details)
43. KDTree: added statistic functions to evaluate the quality of the KDTree (details)
44. Added a dummy unit test that causes the KDTree statistics function to be (details)
45. Changed weekly test to one test just to see if this works.. (details)
46. Fixed weekly test...SSBJ truth file regenerated, IRK4 test commented out (details)
47. Now cut cell can handle a case where a partiioned mesh has disjoint (details)
48. forgot to recover some of the weekly tests (details)
49. Fixed bug in 3d distance function (details)
50. hopefully this doesn't break the build test and webpage scripts...I'm (details)
51. Must copy the files I want accesible to the web server. (details)
52. 1d advecting-diffusing gaussian bump now includes diffusion in the exact (details)
53. Fix of bug in 9981 (details)
54. Fixed the issue where solution file doesn't have solution in it for (details)
55. Changed how the shadow type is read and written, because the length of (details)
56. Residual: disabling residual component timing printouts in (details)
57. forgot some #ifdefs (details)
58. modified SA stuff in new compressible, added generation of pbc file in (details)
59. Fixed warnings in SA for NewCompressible (details)
60. Changed where unsteady coefficients are used and set for unsteady error (details)
61. Fixes, clean up, and a missing file from r9989 (details)
62. undid SA modification in PXCompressible.c (details)
63. Removed redundant ElementNodeArray (details)
64. Started adding in Hexes (details)
65. Corrected parallelization of unsteady output window types, adding some (details)
66. FaceOrientation now implemented for hexes (quad faces).  Added unit (details)
67. -Corrected line parsing in parallel regression testing script to remove (details)
68. ReadWriteGrid: ReadGrmFile and ReadGriFile are now dimension & element (details)
69. missed a file in the last commit, hope commiting 2x in about 1min (details)
70. lol, didn't know warning counter cared about things in the utils (details)
71. Order: Node0D now has nbf = 1 and qorder = 1.  Previously, nbf returned (details)
72. looks like my last commit didn't change an associated unit test, oops. (details)
73. Now each partition can write its own intersection and quad. For that, (details)
74. Added Normal Reference, started enabling hexes (details)
75. added hexes in normal (details)
76. Modified PXNormalReference.h (details)
77. fixing simple memory leak in PXOutwardNormal (details)
78. Fixed the issue when a patch edge intersects a ghosted face twice... (details)
79. 1. Fixed a read/write issue for parallel cutcell. 2. Initialize nENode = (details)
80. Forgot to change a pxu (details)
81. Put unit grids test back in, modified face orientation for tets to match (details)
82. committing on top of laslo's condition red :(  99% sure i have unit (details)
83. added very basic .h entries for the two hexahedra unit grids (details)
84. hexes run, though by no means correctly (details)
85. added mesh size reference, started playing with pxviz, a hex case now (details)
86. tried to fix warnings (details)
87. tried to fix warnings but actually can compile (details)
88. tried to fix warnings (details)
89. tried to fix warnings (I think I got it this time) (details)
90. Hex meshes appear to be working!  Tests so far have been (details)
91. Fixed robust refine for parallel case (details)
92. Fixed a bug in unsteady error estimation, which caused the stage states (details)
93. Fix to get PXPostExec running again (details)
94. When identifying the background element for a point in a cut element, (details)
95. Two end zerod's don't uniquely define an oneD! Now treating such case (details)
96. Adding PXExtrude2DGridToPrisms.c to /utils (details)
97. Vizz appears to be working for hexes and quads natively, and also can (details)
98. Fixed CheckGhostElem for mesh structure -- one ghost element could be an (details)
99. 2D/3DGrid2periodicwithpbc now merged into one function: (details)
100. forgot to change the Grid2periodic call in SolutionTransferExtruded (details)
101. Distance function for hexes appears to be working, (though visualization (details)
102. Undid accidental change to PXUnitCoverageData.csh (details)
103. hopefully fixed PX_PXU not working with coverage check (details)
104. fixed do nothing (details)
105. 1)Adding some unit tests for DistanceFunctionSurfGrid (tests neighbor (details)
106. removing warnings in PXViz.c (details)
107. 1. Fixed a bug when choosing the origin for conic polar representation. (details)
108. added timing routines to the local sampling stage; distance function for (details)
109. the unified adaptation for the RANS cases failed in the previous commit (details)
110. Fixed error in MDF for overlapping additive Schwarz (details)
111. Added uniform quads and hexes (details)
112. 1) Removed Line attachments (for the long defunct line reordering) (details)
113. Updated indexing for unsteady adjoint solve. (details)
114. added matlab scripts for generating hexes (details)
115. Moved Masa's changes to (addition of) truth surrogate deallocationin (details)
116. small changes to speed up the local sampling routines; linear solver (details)
117. comming linear solver update for the local sampling stage (details)
118. regenerated regression tests using the new, faster local sampling (details)
119. made a change to the parallel assembly of the nodal metric (in the grid (details)
120. this commit will go status red (details)
121. regenerated the 2 failed regression tests from last commit (details)
122. 1) Grm read/write now supports empty BFaceGroups.  This is a potentially (details)
123. Added new quadrature points for tets, Gmsh2Grm now works for Q4 hexes (details)
124. modified cut cell 3d test to account for change in quadrature rules (details)
125. Added new quadrature rules for tets, and modified associated unit tests (details)
126. regenerated tests for 3d cases which failed with new quad rules (details)
127. Regenerating truth file for RAE RANS Subsonic Uniadapt.  InitState (details)
128. Parameter handling update; parameters are handled as follows: (details)
129. 1. Added QR using lapack, and cut quad weight generation now calls (details)
130. The lapack function dgeqr seems behaving differently for lapack version (details)
131. Now the qr unit test checks Q*R, should pass for every version of lapack (details)
132. Updated the truth file for some cutcell cases as the quad weight (details)
133. 1) Changing the way the tree is setup in SolutionTransfer.  Full details (details)
134. missed a #include (details)
135. Improved unit testing in DistanceFunction not be dependent on results (details)
136. Changed FlowTan BC for viscous, I expect some tests will fail (details)
137. Regenerated Shock Capturing Tests which changed with modified flow tan (details)
138. Added a new 2d cut cell quad rule, now using it for integrating 3d basis (details)
139. updated the 2d local mesh operation in preparation for 3d (details)
140. forgot to add PXSubMesh.h (details)
141. fixed a warning (details)
142. updated truth files for the uniadapt regression tests (details)
143. fixed make files so that unit tests run (details)
144. i might've maybe left "CheckTruthFile..." as "CreateTruthFile..." in (details)
145. Modified solution transfer to used KDTree, This may break some (details)
146. Modified warning log for make check, fixed test for PXOrder, commented (details)
147. reverted BTRun and BTLog scripts (details)
148. reverted BTRun and BTLog scripts (details)
149. Made other changes in SolutionTransfer and KDTree to handle passing in (details)
150. Regenerated adaptation files after changing solution transfer (details)
151. Corrected state initialization for unsteady (states were being (details)
152. Fixing a bug where searching the KDTree could result in a segfault. (details)
153. Cleaned up DistanceFunction & DistanceFunctionSurfGrid to use the (details)
154. Updating regression tests that failed in the last commit (due to minor (details)
155. 1) When CheckMetric... is used in regression tests, changed error msg to (details)
156. Changed some weekly test truth file because of changes in dist function, (details)
157. 1) Getting rid of clumsy macros in Residual. (details)
158. forgot a return statement (details)
159. PXReadWriteGrid: adding a little more debug info for when TextGrid2Grid (details)
160. Working toward using Masa's direct adaptation for unsteady (details)
161. 1) Added support for "global data" in KDTree.  Previously, a data (details)
162. Due to the change of flow tan BC for viscous, now change the transonic (details)
163. Now the ONERA case should pass.. (details)
164. fixed the restart counter and px now errors out if a given parameter is (details)
165. Unsteady and steady memory management for error estimation (thanks Masa (details)
166. Corrected residual scaling for unsteady residuals.  This is only done (details)
167. Fixed naca weekly job file (details)
168. partial commit of 3d optimization based adaptation and the space-time (details)
169. regenerated uniadapt truth files (details)
170. updated truth metric for shock uni adapt cases (details)
171. 1) changed kdtree a little to remove a redundant pointer & decrease (details)
172. oops last commit didnt compile w/o -timing b/c of bad } placement (details)
173. removing implicit fcn declaration warnings (details)
174. updated wave equation eq set (details)
175. regression test running RAE2822, RANS2d, Subsonic.  Tests the (details)
176. oops didn't put the right test name in runTests (details)
177. started committing some distance function changes in small chunks (details)
178. updated wavespacetime; modified the unified adatpation algorithm for the (details)
179. added int64/128 version of bamg (details)
180. 1) Added PXE_AutoQuad (for automatically deciding quadrature). (details)
181. wrote != and meant == (details)
182. Added folded face angle input to MADCAP adaptation script.  Default (details)
183. Unintended change in last commit (details)
184. Some accumulated changes in my local checkout.  Absolute value of direct (details)
185. Corrected bug in PXSolver whereby multi-stage solves initialized all (details)
186. Added some distance surface stuff (details)
187. regenerated RANS tests due to machine precision differences in distance (details)
188. Modified direct adapt to do distance function correctly (details)
189. Fixed bugs in metric based adaptation in 3d (details)
190. fixed accidental commit of bad test (details)
191. fixed minor bugs in adaptation metric for 3d (details)
192. changed some minor things in how madcap is called, including saving (details)
193. Forgot to commit change in readwrite grid to allow higher order tets (details)
194. Added a 'StateMod' function pointer to equation sets.  This modifies a (details)
195. Modified KD nearest neighbor exhaustive search (details)
196. Regenerated truth metric files where relative difference < 1e-8, (details)
197. incorrect data type in MPI bcast.  Only possible effect on windowed (details)
198. Added momentum (difference) squared output for compressible equation set (details)
199. New solution perturbation function (for unsteady initial condition (details)
200. Correcting compile warning in previous commit (details)
201. added space-time discretizatio of the Euler equations (details)
202. Added RegionAttribute struct to enable cases of multiple materials (details)
203. Added RegionAttribute struct to enable cases of multiple materials (details)
204. Added RegionAttribute struct to enable cases of multiple materials (details)
205. This time hope to go green (details)
206. State initialization/modification changes for unsteady (details)
207. Introduced EmbeddedInteriorFG and Cut Interior elements from 2d (details)
208. Fixed bugs introduced in my previous commit (details)
209. Fixed bugs introduced in my previous commit (details)
210. Fix the coverage (details)
211. Green now? (details)
212. Now can run interface problems with cut cells (details)
213. git-svn-id: file:///home/svnroot/projectx/trunk@10142 (details)
214. Fixed the bug in treating different regions, now convergence rate is (details)
215. Fix the warnings (details)
216. added functions for testing l2 projection to the Scalar library (details)
217. added the AnalyzeElementSize source file (details)
218. small changes in reading/writing hexes, reading madcap metric and (details)
219. Reverted back to revision 10146 (details)
220. Fixed the unit test seg fault due to the addition of EmbeddedInterior (details)
221. Forgot to compile all the unit tests (details)
222. Adding fPIC to cxxopt (details)
223. 1. During canonical shape recognition, if an element has a face whose (details)
224. Changed truth file for 2d cut cell results because the way of setting (details)
225. Started making ASM work with in-place ILU (details)
226. regenereted some truth metrics, modified metric check (details)
227. Additive Schwarz should now work with ILU (details)
228. Added missing test (details)
229. Made SA modifications in newcompressible library (details)
230. recommitted old version of RAE2822_A28_RANS_M0p3_AA2p31_RE6p5e6_TEST.job (details)
231. minor modifications to MeshMetric and Grid Info (details)
232. Fixed warnings (details)
233. Fixed warnings (details)
234. Fixed a small bug for cutquad (details)
235. 1. Added the capability of using shadow basis for canoical elements; 2. (details)
236. The code for L2 projection when computing Hessian was not correct for (details)
237. Changed truth files for the last commit about projection of states for (details)
238. 1. Now 2D cut cell visualization triangulates the cut elements; 2. Fixed (details)
239. made newcompressible modifications (details)
240. committed minor changes to stuff written out for madcap (details)
241. actually compiles (details)
242. removed warning (details)
243. regenerated unit tests calling parmetis, since parmetis call changed (details)
244. ASM works with ILU and MG (details)
245. 1. Fixed a bug using shadow basis for canonical elmeent, when one face (details)
246. Change triangle quadrature rules, regenerated some unit tests to account (details)
247. removed offending lines (details)
248. Modified cut-cell unit test to account for new quadrature rules (details)
249. Regenerated tests, doing full physicality check for local solves in (details)
250. regenerated channel_NavierStokes3d_Test (details)
251. Added plotting of dissipation for new compressible library (details)
252. 1) Added some #ifdef __CUDACC__ directives to remove function (details)
253. fixing warnings (details)
254. doh edited the wrong line (details)
255. Handling 0, negative determinant in distance newton search, now reverts (details)
256. regenerated RANS adaptation tests since distance function changed (details)
257. Merging now works for interface problems (details)
258. Solution transfer utility parallelized, starting to parallelize use in (details)
259. Fixed warnings (details)
260. Added a regression test for 3D cutcell adaptation (details)
261. Made the truth metric file for the 3d adaptive cutcell case (details)
262. modified BTRun script so madcap could be called correctly (details)
263. dummy commit (details)
264. Set code to error out on old (ie. not FFMA or Unified) adapation branch, (details)
265. Changed adaptation tests from old style to new style (details)
266. dummy commit (details)
267. regenerated naca_Euler2d_Adapt_TEST, commented out checking of truth (details)
268. Modified metric check to use correct normalization, added parallel (details)
269. should actually pass (details)
270. removed uni adapt parallel rans tests since the metric on these don't (details)
271. dummy commit to get tests to run (details)
272. solution transfer is now parallel (details)
273. modified make file to try and resolve dependency issue (details)
274. dummy commit to get tests to run (details)
275. moved stuff around in PXInit and RunSolver so that PXInit functions can (details)
276. modified tolerance for hemisphere Euler adapt test (details)
277. modified parallel solution transfer to handle cut cells (details)
278. modified some timing code, BTRun no longer contains madcap key (details)
279. Accidentally committed using new compressible, this has been undone (details)
280. fixed warning (details)
281. Reorganizing the grid/state initialization and solution transfer so (details)
282. changed timing code to used MPI_Wtime (details)
283. changed greater than check to greater than or equal to check (details)
284. Removed extra info from pxa files (details)
285. modified solution transfer to use newton search, HP adapt not (details)
286. Fixed small bugs from previous commit (details)
287. regenerated RANS adaptation test cases (details)
288. Modified PX-generated madcap script to maintain compatibility with (details)
289. Some distance function tweaks (details)
290. tweaked new compressible to allow TtPta bc in 3d (details)
291. 1) Changes to DistanceFunctionInit() interface: now accepts "distOrder" (details)
292. more distance function/solution transfer fixes (details)
293. One last solution transfer change (details)
294. regenerated cutcell rans adapt test, changed tolerances for RAERANS (details)
295. regenerated tests which just barely failed (details)
296. regenerated truth file for cutcell_football test (details)
297. 1. Cut cell now works with optimization adaptation (only in 2d so far); (details)
298. Changed one cut cell truth file (details)
299. Made 3D merging not allow two full elements (details)
300. Now Children attachment for pgback doesn't store any cut elemens twice (details)
301. Madcap got changed...so regenerated the tests calling madcap (details)
302. xface for cut interior/boundary faces are changed; if one neighbor is (details)
303. Disable all the printf's for cut cell local solves (details)
304. Now geometric adaptation does not generate true metric files; Changed (details)
305. Tetgen website got changed (details)
306. fixed a bug introduced in the last commit (details)
307. Unsteady adaptation with non-fixed initial condition temporarily (details)
308. oops, missed this change in previous commit (details)
309. Variable initial conditions now handled more consistently and correctly (details)
310. Bug fixes for new unsteady initial condition handling.  Should now be (details)
311. Now optimazation adaptation with cut cells works for single-domain (details)
312. Removed long-standing bug from unsteady solve that would have caused (details)
313. More debugging of unsteady adaptation mods.  (I'm committing these (details)
314. Final changes to unsteady adaptation to be able to recreate steady (details)
315. Changed solution transfer input state for modified-steady-state initial (details)
316. Updating truth files for unsteady adaptation tests (not just copies of (details)
317. Modifying/setting state with function now acts on entire subgrid (details)
318. 1. When transfering states from original cut elem to split cut elem, now (details)
319. Add RobustRefine for direct adapt (details)
320. 1. Made the PartitionGivenMatching bounding box tolerance bigger; 2. Now (details)
321. 1. fixed previous warning; 2. fixed a bug in visualizing 2d cut cells (details)
322. Now using shadow basis with canonical quad rule can be specified from (details)
323. Slightly changed some 2d truth files as solution transfer got changed (details)
324. Local solve for cut cells, now we directly copy the states of those (details)
325. 1. If a tiny element is merged, only a small fraction of the error on (details)
326. 1. If a tiny element is merged, only a small fraction of the error on (details)
327. Fixed a unit test seg fault; added a regression test for cutcell (details)
328. Committed the truth file for the added test case (details)
329. Modified StateMod behavior to be included directly in the residual (details)
330. Typo in previous commit (details)
331. Made MultiComponentConvDiff work for DG with CharatesticBC (details)
332. Add a regression test for interface problems (details)
333. 1. Added a multiphysics eqnset; 2. Added interface residual (working for (details)
334. Fixed a bug in intersection for interface cases with a trailing edge (details)
335. 1. The multiphysics convdiff library more complete and better tested; 2. (details)
336. Interface residual and lifting done, but not tested for nonlinear cases (details)
337. updated space-time wave and compressible libraries (details)
338. small change to the anisotropy stepping; this will break the regression (details)
339. regenerated UniAdapt AffineInvariantVert cases (details)
340. Removed malloc.h include (why was this needed anyways?) (details)
341. git-svn-id: file:///home/svnroot/projectx/trunk@10270 (details)
342. Now interface problems can include non-zero state jump and non-zero flux (details)
343. Removed complier warnings (details)
344. 1. Interface shape can now be a loop; 2. Added a test case with non-zero (details)
345. Fix the unit test (details)
346. fixed a bug when interface is a loop (details)
347. Now interface can be a loop that consists of multiple splines (details)
348. Messed up ScalarConstantSource in the last commit (details)
349. The star shape case results slightly changed due to previous commit (details)
350. InterfaceFluxOutput functional added (not well tested yet) (details)
351. Fixed a bug in computing bounding box based on face quad if one face has (details)
352. Remove compiler warning (details)
353. Fixed a bug in spline-edge intersection, when the resulting equation has (details)
354. No change; just to trigger px website to update (details)
355. Interface flux functional now debugged and tested (details)
356. Added an adaptation test for interface heat flux (details)
357. updated truth file for the interface flux (details)
358. Last commit failed because Reynolds ran out of disk space...This commit (details)
359. Now plotattach works for cut cells in matlab (details)
360. Fixed a bug in plotting in matlab for cut cells (details)
361. fix the sign of interface flux jump (details)
362. Forgot to update truth file last time (details)
363. git-svn-id: file:///home/svnroot/projectx/trunk@10292 (details)
364. Interface residual succefully pinged for multi-component equations (details)
365. Split interface viscous flux into left and right components (details)
366. Forgot to update Scalar library for the split interface flux (details)
367. Tested nonlinear multi-component interface problems. Next is to add NS + (details)
368. Added NS+Poisson equation set, not tested yet; modified (details)
369. Heat conjugate eqnset now runs, but results still not right. (details)
370. Heat conjugate eqnset now works (details)
371. Add output evaluation for heat conjugate eqnset (details)
372. Add quad into matlab pxa plot (details)
373. 1. Robin BC now works for heat conjugate; 2. Changed \hat{T} for heat (details)
374. 1. Implemented convective heat for heat conjugate (i.e. Robin bc); 2. (details)
375. Now should compile (details)
376. Fixed unit test (details)
377. Fixed a bug in solution transfer for multi physics problems (details)
378. Fixed a bug in plotattachvectorized.m introduced last time; and change (details)
379. Platform-specific installation instructions (details)
380. Utilities from Josh Krakos (details)
381. Fixed a small bug for 3d cut quad (not affected results) (details)
382. Now cut cell works in parallel on the new cluster; added 'robust refine' (details)
383. Now cut cell works in parallel on the new cluster; added 'robust refine' (details)
384. removed compiler warning (details)
385. Restructured the exception handling for cutcell in parallel to make (details)
386. Forgot to change makefile (details)
387. minor changes to the 3d cutcell util (details)
388. Compiler warning removed (details)
389. A few trivial changes (details)
390. LAPACK functions ready for approximate Fekete point calculation (details)
391. Try to trigger BTRun on acdl? (details)
392. Changed Math_PXU for LQ factorization because lapack version is (details)
393. Try to trigger BTRun on acdl? (details)
394. Approximate Fekete tested on toy problems (details)
395. Fekete points now working (details)
396. truth file slightly changed due to change in quad rule generation for (details)
397. Nothing changed; but we got a new madcap key (details)
398. Forgot to change madcap key file on reynolds (details)
399. git-svn-id: file:///home/svnroot/projectx/trunk@10328 (details)
400. Approximate Fekete now the default quad for 3d cut cell (details)
401. Change the truth file for fekete points (details)
402. Commit to test the new acdl machine (details)
403. 3d cut cell now treat linear patches quickly (details)
404. Linear patch now works for 3d cut cells (details)
405. Dummy commit  to test acdl (details)
406. Fixed a small bug in parallel cut cell (details)
407. Commit wrong file last time (details)
408. git-svn-id: file:///home/svnroot/projectx/trunk@10337 (details)
409. dummy commit to test acdl (details)
410. Fixed bugs in solution transfer for 3d cut cells (details)
411. Fixed seg fault from last commit (details)
412. Added a regression test for CHT (details)
413. git-svn-id: file:///home/svnroot/projectx/trunk@10342 (details)
414. Recommit the CHT results on reynolds (details)
415. Added a utility (details)
416. Fix compiler warning (details)
417. Added visualization of least-square error in Masa's surrogate error (details)
418. Removed compiler flag incompatible with some versions of gcc (it broke (details)
419. Lagrange multiplier output format, rate matrix synthesis error (details)
420. Added a cooler way of monitoring MOESS' sampling stage. (details)
421. if the background edge or face is parallel to axis, then intersection (details)
422. Added negative SA model Library (details)
423. Added cn1 constant to PXCompressibleParameters.h (details)
424. Shell script util for obtaining output data for multiple p-order runs (details)
425. Matlab script for plotting L2 norm convergence. (details)
426. Dummy change (details)
427. matlab script to output and plot adaptation drag and error estimate. (details)
428. Deprecated visualization of logErrorSwitch (details)
429. Deprecated visualization of least-squares error for MOESS (details)
430. Changed the default Compressible library to be the negative SA model. (details)
431. added back some accidental deletions/changes to Compressible library (details)
432. 3D cut cell volume quadrature has a better control on number of sample (details)
433. Update truth files (details)
434. Added function to approximate voronoi volume (details)
435. Added function to approximate voronoi volume (details)
436. Magic point added and tested (details)
437. cut cell results slightly changed (details)
438. Now nbasis in the job files really mean number of basis, which is quad (details)
439. Forgot to update a unit test (details)
440. one more unit test fixed (details)
441. Changed regresstion test results for cut cells, due to revision 10367 (details)
442. Implemented quad rule such that polynomials of a given total degree will (details)
443. Better control on number of face quadrature points for 3d cut cells; (details)
444. Update truth files (details)
445. Changed cut cell quadrature to magic points with a given total-degree (details)
446. Fix compiler warning (details)
447. fixed a unit test by machine precision (details)
448. Updated 3d cut cell truth file (details)
449. Add an option to use all sample points for quad points (details)
450. Forgot to include a bfgrp for drag for bump case (details)
451. Now 3d bounding box calculation does not need to compute any planar (details)
452. truth file slightly changed (details)
453. Changed madcap input script so that we can take in vertex based metric (details)
454. Changed madcap input script so that we can take in vertex based metric (details)
455. Fixed utils.make to allow proper compiling (details)
456. fix compiler warning (details)
457. Changed truth file because madcap changed (details)
458. a hack to save all .bnmetric files (details)
459. fixed a small bug in readeb3 when there are multiple fgrp (details)
460. fixed a small thing in parallel cut (details)
461. Geometric adapt doesn't work with madcap (details)
462. Can now write 3d cut cell visualization to matlab format (details)
463. no change (details)
464. Fixed a very small bug in viz 3d cut cells (details)
465. Convergence rate script updated with more robustness (details)
466. Convergence rate script updated with more robustness (details)
467. dummy commit (details)
468. test acdl machine (details)
469. modification to allow for ViscEtaParameter = 0 (details)
470. Added Average option for Inviscid flux type (averages left and right (details)
471. Added .ursa file format (exports .gri with nodal metric) (details)
472. fixed artificial viscosity jacobian bug in PXCalculateArtificialA_uv; (details)
473. rearranged setup/destroy calls to avoid uninitialized variable compiler (details)
474. fixed jacobian evaluation for artificial viscosity terms in routines (details)
475. eliminated extra factor of U[0] in jacobian d(Dtil)/d(UX) in routine (details)
476. dummy commit (details)
477. resolved bugs in shock switch jacobian (S_U); (details)
478. added new truth file for diamond airfoil case with Indicator-based (details)
479. removed ping tests from Test_PXIFacePrimalJumpResidual_CalcAnsTerm, (details)
480. Modification to madcap script generation to perform Q3 mesh generation (details)
481. Tool for generating 4-digit naca airfoil gri/ebg (details)
482. Forgot to link the math library for gcc on linux (details)
483. PXGenNacaMesh now calls PXMeshElasticity for curving and tried to (details)
484. Fixed unknown compiler warning for build test (details)
485. git-svn-id: file:///home/svnroot/projectx/trunk@10414 (details)
486. removed CGNS dependency from build; source code relating to CGNS is (details)
487. transfer repository to jkudo (details)
488. dummy commit (details)
489. UMFPACK double-long routines (dl) are called in case 64-bit library is (details)
490. missed some CGNS related makefile mods (details)
491. dummy commit (details)
492. dummy commit (details)
493. dummy commit (details)
494. dummy commit (details)
495. Changes to fix regression tests (using 'hacked' bamg) and to fix (details)
496. Changes to fix regression tests (using 'hacked' bamg) and to fix (details)
497. Modification to BTRun.sh to compile bamg128 instead of bamg (details)
498. Modification to BTRun.sh adding current directory to (details)
499. Added LD_LIBRARY_PATH=. for ContinuousIntegration (details)
500. Added LD_LIBRARY_PATH=. for ContinuousIntegration -- attempt2 (details)
501. Testing ifdef __cplusplus for building -- may not work (details)
502. Testing library order (PXGrid before PXCutCell3d) (details)
503. Trying to eliminate cyclic dependency of CutCell3D and Grid (details)
504. added environment variable for bamg HOSTTYPE (details)
505. dummy commit (details)
506. undo HOSTTYPE try because Jun knows what to do... (details)
507. Added CGNS option to configure (always true for now) (details)
508. CGNS default = false (details)
509. final change to BTRun.sh (details)
510. added adaptation history print out (.adapthist) (details)
511. fixing previous commit (details)
512. rolling back previous two commits... something broke and not sure what (details)
513. Accepted platform configuration files (details)
514. New configuration/makefile system with accepted configurations for (details)
515. For some reason the external libraries weren't added (details)
516. Documentation on how to configure and build (details)
517. Commented PXGenNacaMesh and started meshing documentation in man/Meshing (details)
518. git-svn-id: file:///home/svnroot/projectx/trunk@10447 (details)
519. Modifcations to BTRun.sh and regression testing to work with new (details)
520. Trying again - BTRun.sh (details)
521. Modification to PX execute scripts allowing for /bin locations (details)
522. Known configuration file for parallel build on Mac + documented (details)
523. new Job/Knob system (details)
524. fixed string comparison warning (details)
525. Updated meshing documetation with 2d cut-cell (details)
526. added ParallelPreconditioner to master job file and removed (details)
527. changed executable path to include PX_ARC (details)
528. added Master Job File example to test directory for reference (details)
529. Updated PXUserGuide and changed GoldStandard to include (details)
530. added adaptation history output (.adapthist) (details)
531. How to download/build/parallel + some very annoying aesthetic fixes (details)
532. svn co in user guide missing username (details)
533. intel (details)
534. Fixed typo in configure script (details)
535. grm format in meshing doc (details)
536. BTRun.sh for new reynolds (details)
537. dummy (details)
538. Adding bamg executable to repository to use with regression tests on new (details)
539. Changes to fix running on new reynolds machine - I have commented out (details)
540. Configure script looks for NLOPT_DIR and defines -DUSE_NLOPT if desired (details)
541. dummy bamg (details)
542. git-svn-id: file:///home/svnroot/projectx/trunk@10471 (details)
543. bamg source (details)
544. forgot details: modified BAMG source so that standard include filenames (details)
545. git-svn-id: file:///home/svnroot/projectx/trunk@10474 (details)
546. Added some basic CMake abilities to compile ProjectX and unit tests (details)
547. Cleaned up out of source message (details)
548. Added more CMakefiles to get more shared libraries compiled (details)
549. Added fortran for Lapack (details)
550. Enabling madcap cell connection capability - controlled with (details)
551. Added more CMake files. Nearly complete now. Fixed compile warning in (details)
552. Cleaned up FindLEDA a bit (details)
553. Fixed missing *.cpp unit tests with CMake (details)
554. Removed assumption that "." is in the path for "make check". Fixed some (details)
555. Added some duplicate Compressible folders to CMake (details)
556. Known issues in building documentation. First one: mpi/parmetis (details)
557. Hopefully fixed problems with MPI and CMake. Added SVN revision target (details)
558. Set the default build type to be release, but debug if the build (details)
559. openmpi seems to run CutCell3d jobs...Jun: I already changed your (details)
560. using older parmetis so unit tests don't have to change (details)
561. bamg HOSTTYPE=x86_64-linux not x86_64 (details)
562. since CutCell3d tests are commented out, try parallel tests with mpirun (details)
563. Re-added ./ for coverage tests because it messed up coverage check (details)
564. forgot CompressibleOliver (details)
565. Adding nonlinear optimization capability using NLOPT library for MOESS (details)
566. Added a Makefile.cmake to drive cmake from the PX_DIR directory. Memory (details)
567. Fixed failing ParMetis unit test. Fixed _RUN targest for unit tests to (details)
568. Modification to NLOPT optimization to allow CutCell optimization (details)
569. Added memcheck to the unit tests. Added cholmod as an otional library (details)
570. Forgot the rt library (details)
571. Fixed some linker flags for cmake so that shared libraries will be found (details)
572. Changed so that parallel is only enabled when both MPI and ParMetis is (details)
573. Forgot to copy PXVizz with CMake (details)
574. Reversed the include logic for unit tests so that it is a bit cleaner (details)
575. Cleaned up cmake just a little (details)
576. Cleaned up some CMake files (details)
577. Fixed compiler warnings (details)
578. Working on cleaning up lots and lots of warnings (details)
579. Cleaning up PXHPAdaptDirectStruct.h by removing things that aren't used (details)
580. Fixed a typo (details)
581. Cleaned up nearly all warnings. There are still some left to fix (details)
582. Fixed warnings that I missed. Added all serial reg tests to cmake. Fixed (details)
583. Fixed the regression tests to work even when there are no warnings (details)
584. Forgot a file (details)
585. Added line-dump functionality which outputs values of a specified (details)
586. added function definition for PXCalcCharacteristicSpeed (details)
587. removed unused variables (details)
588. fixed unused variable (details)
589. Fixing divide by zero issue in PXLimitAdaptMetricBounds during unit (details)
590. Fixing previous commit (details)
591. Fixed a bunch of divide by zero caught by clang. Fixed some null (details)
592. Fixed CMake for MAC (details)
593. Regression tests now run with ctest. Made other cosmetic changes to (details)
594. Fixed some compile warnings (details)
595. Cleaned up NLOPT library error message. Fixed warnings when compilig (details)
596. Fixed some PARALLEL bugs in cmake. Added local coverage information to (details)
597. Minor fixes (details)
598. Small change to make sure CMakeLists.txt does not get deleted by (details)
599. addede a coverage_clean command (details)
600. Added NuTildeLine, and headers for line output files (details)
601. forgot header file (details)
602. Fixed a bunch of warnings with gcc 4.8. Fixed wrong number of arguments (details)
603. Fixed mistakes in coverage. Formatting cleanup. (details)
604. Fixed Cmake for Ubuntu (details)
605. More work cleaning up memory (details)
606. Fixed some compile errors (details)
607. Just some cleanup of memory error message (details)
608. Fixed valgrid suppression file mistake. Fixed memory in KDTree unit test (details)
609. Fixed so that Makefile.cmake has tab completion. Fixed some memory (details)
610. fixing allocation issue in NLOPT unit test in PXHPAdaptDirect_PXU.c (details)
611. Some general cleanup (details)
612. Job/Knob updates (details)
613. Job/Knob updates (details)
614. Fixed uninitialized pointers in LinearSolver (details)
615. fixed integer cast error (details)
616. Fixed up things so the intel compiler works. Hopefylly fixed (details)
617. Multi-Region and Fully Embedded Cut-Cell Methods with Visualization (details)
618. Cleaned up some more non-NULL pointers and other memory problems (details)
619. Revived two unit tests (details)
620. Typo in the makefile (details)
621. Small formatting changes (details)
622. git-svn-id: file:///home/svnroot/projectx/trunk@10551 (details)
623. CHT Interface/Error Outputs, Test Functions, Initialize Functionality (details)
624. Josh's fix for using the Resolution Indicator with MOESS (details)
625. Trying to fix CMake for non-system suitesparse (details)
626. Still working on suitesparse (details)
627. changing madcap script to not locally refine elements while curving (details)
628. Unit Testing InitFunction (details)
629. Iterative constraint method for MOESS NLOPT optimization (details)
630. Changed CMake to bias towards static libraries rather than shared (details)
631. Changed this so that intel compiler links staticaly to the mkl library (details)
632. Forgot to remove the gfortran library from the link (details)
633. Cleaning up CMake stuff (details)
634. Forgot a file (details)
635. Modified cmake files some more (details)
636. Fixed some clang warnings (details)
637. fixed some NULL pointers in Grid folder (details)
638. Call to ursa (unstructured anisotropic mesher), can be set with Mesher = (details)
639. removed unused (details)
640. forgot to commit this (details)
641. Noticed a segfault from nullifying pointers (details)
642. Fixed some NULL pointers (details)
643. Accidentally forgot to revert PXMemory (details)
644. Cleaning up Viscous calculations (details)
645. Refactoring viscous terms (details)
646. philip wrote a unit test? (details)
647. Fully Embedded CutCell, Spline, UnitCutGrids, Visualization Unit Tests (details)
648. Making change to ensure that MADCAP pulls the q1 background grid from (details)
649. Trying again... (details)
650. Trying again 2... (details)
651. Region attachment modification for adaptive multi-disciplinary cases (details)
652. Added DynamicEddyViscosity lineplot (details)
653. Cleaned up some NULL pointers. Refactoring PXVisxous.c (details)
654. Fixed null pointers (details)
655. Fixing NULL pointers and working on PXParallelGrid_PXU (details)
656. Fixed some NULL pointers (details)
657. Fixed failing unit test to get PX back into green (details)
658. Fixed all null pointers in Grid folder. All unit tests passed, but (details)
659. forgot to update utils folder (details)
660. forgot to fix one more file (details)
661. more errors.. (details)
662. Fixed more NULL pointers (details)
663. I think all the poiners are finally set to NULL. It's a miracle! (details)
664. Hopefully this puts us back in green, but with NULL pointer checking (details)
665. Did a better job checking things this time. I think this should put is (details)
666. Now hopefully fixed all the NULL pointer problems (details)
667. Fixed memcheck so it works properly and fixed some more non-NULL (details)
668. Cleaned up some more memory leaks. Added a switch to dissable the build (details)
669. Fixed unit test failure (details)
670. All the pointers tested by unit and regression test have been set to (details)
671. Fixed a bunch of NULL pointers in PXViz (details)
672. Fixed some NULL pointers for PXViz (details)
673. Fxied parallel issue with PXMatchingPartitionParallelGrid by not using (details)
674. Added a ebg file plotter (details)
675. Added a python plotter for ebg files (details)
676. Cleaned up the plotebg script (details)
677. Cleaned up some NLOPT stuff - changed Normal Verbosity output to print (details)
678. Forgot to commit changes to unit test! - trying again (details)
679. Fixed MatchingParallelPartition. Added arguments to make the diffusive A (details)
680. Hopefully fixed HighOrderFaceBoundingBox (details)
681. Fixed the problem with not all elements distributed to processors in (details)
682. allow init function to be used to initialize adaptation iter; (details)
683. Added a Critical Speed of Sound calculation in preparation for Dilation (details)
684. Fixed some non-NULL pointers (details)
685. Added nightly memcheck scripts (details)
686. Added a general airfoil mesh generator (details)
687. Forgot to uncomment something (details)
688. Working on the webpage scripts (details)
689. More work on nightly memcheck scripts (details)
690. Fixed a typo (details)
691. Hopefully fixed up the nightly memcheck (details)
692. Hopefully fixed up parallel memcheck and nightly memcheck (details)
693. Still trying to get memcheck working on Reynolds (details)
694. Twaeking nightly build (details)
695. Added another valgrind  suppression (details)
696. Hopefully the nightly memcheck scripts are finally properly configured (details)
697. Changing regression test hemisphere_Euler3d_Adapt to have DualErrorFlag (details)
698. Modified TtPta BC to improve robustness; incorporated BC into new (details)
699. compiler warning fix for TtPta BC (details)
700. Added regeneration to the regression tests (details)
701. Explicitly added pthread as a library linked to. This is needed when (details)
702. Changed BTRun to email the log of runTests.csh rather than results.out (details)
703. Did get the regtest log fixed on the last try. Hopefully works now (details)
704. Third time is the charm (details)
705. git-svn-id: file:///home/svnroot/projectx/trunk@10634 (details)
706. Hopefully suppressed odd MPI warning with valgrind (details)
707. Added fix for state gradient calculation bug in PXOutputFunctional.c (details)
708. Fixed memcheck log (details)
709. regenerated TtPta related regression tests (details)
710. Updated regression test stuff (details)
711. Fixing the BTRun script to work with openmpi-1.6.5 (details)
712. regression test using TtPta BC regenerated (details)
713. added diagnostic output for internal inconsistency error in (details)
714. Fixed BTRun acripy from chenging MPI_DIR (details)
715. removed logic error introduced in previous commit; improved processing (details)
716. change in PXIntersect2DLinearSegmentWithLine (details)
717. Added a new line output for velocity components - VelocityLine (details)
718. tolerance to regression tests (details)
719. Added unit test for PXCalcReynoldsStress (details)
720. Commented out ping test for PXCalcReynoldsStress (details)
721. Fix for Reynolds stress Jacobian + unit tests (details)
722. Fixed  PingPXCalcReynoldsStress_J_UX_2d (details)
723. Added StateTensorLine to UnitEquationSet's line output code (details)
724. Modifications to UnitEquationSet unit tests. Removed output type (details)
725. Forgot 2 files. (details)
726. Added PXCalcStateOutput_PXU, which is still messed up. (details)
727. Commented out error return (details)
728. Added Dim (details)
729. Replaced ReynoldsStressLine output with 3 separate line outputs for the (details)
730. Modification to call new madcap (details)
731. MaxAnisotropy specification will now properly go into MADCAP (details)
732. matlab util for grid conversion (details)
733. Fixed issues with unit tests in PXOutputFunctional_PXU and (details)
734. few changes in computing line-line intersection (details)
735. Added in boundary integral output for density. (details)
736. turned off comment for out-of-range intersection (details)
737. CHT Framework - interface and wrapper functions, multiple region (details)
738. Include VelocityFunction as JobFile parameter (set in .RA for CHT) (details)
739. Updated Gold Standard for parallel jobs to use the Additive Schwartz (details)
740. Fixed a bunch of unsigned/signed comparisons (details)
741. 2d Hybrid mesh support for linear/nonlinear elastic mesh deformation (details)
742. Forgot to include header in commit (details)
743. fixed utility (details)
744. Added the compilation of bamg, tetgen, and qhull so that regtest will (details)
745. Prematuerly commited -Wextra (details)
746. Renamed some log files for the nightly memcheck. Testing that the (details)
747. unsigned/signed integer issues resolved, RegionAttribute_PXU memcheck (details)
748. Compiler flag set to include all warnings in compiler output (details)
749. Updated how coverage works. coverage does not include PXU files, (details)
750. fixing compiler warnings (details)
751. Updated header writing code for line outputs. (details)
752. Fixed some compiler warnings (details)
753. fixed WriteParameter function (details)
754. Added a section that explains what the Gold Standard is and how to (details)
755. Fixed compiler warnings (details)
756. Updating the website checks to use cmake (details)
757. more work on the website (details)
758. Fixed a problem with regtest_memcheck (details)
759. Still tweaking the website (details)
760. More tweaks to the website (details)
761. Fixed a mistake in BTRun.sh (details)
762. More tweaks to the website (details)
763. bug fix in Grid2Mesh (details)
764. Added a flag for extra valgrind flags. Fixed uninitialized SA_cn1 in (details)
765. Found that gnFactor was not initialzed for SA as well. Fixed a bunch of (details)
766. Fixed EqnSetStruct handling within PXViz (resolved DSYEV error) (details)
767. Changed the tetgen website so it hopefully is more reliable (details)
768. Fixed coverage for lcov 1.9 (details)
769. added if-tests to eliminate allocation/use of ElemNull for boundary (details)
770. New CHT, CutCell, FullyEmbedded, Adaptation, FlatSlab regression test (details)
771. Cleaned up regression test CMakeLists.txt (details)
772. Regenerated failing regression tests (details)
773. added CHT regression test to cmake / eqnset modifications (details)
774. CHT regression grid files (details)
775. Switched the Makefile so it now uses CMake. Nearly all regression tests (details)
776. Fixed a memory error in LinearElasticity. Cleaned up cmake a little and (details)
777. added Read/Write checks to allow for old pxa visualization (details)
778. Added more cmake documentation (details)
779. More or less finished documenting the cmake build process (details)
780. Fixed a bug in cmake files (details)
781. Removed output of trS to adapt pxa (details)
782. one of the trS still lingered around? (details)
783. removed unused variables (details)
784. CHT unit tests, memcheck fixes (details)
785. forgot the pxu (details)
786. more CHT unit tests (details)
787. more CHT unit tests (details)
788. git-svn-id: file:///home/svnroot/projectx/trunk@10717 (details)
789. Added a unit test. Reverted BTRun.sh to use wget to download Qhull and (details)
790. Chanced the BTRun.sh script back to not use wget (details)
791. Added a temporary fix to deal with tetgen website being down (details)
792. Fixed the regtest failure I made (details)
793. lots of CHT unit tests (details)
794. Fixed tetgen link bug. Added _nocheck to regression tests that just runs (details)
795. Fixed memory leaks in PXPartition (details)
796. Create/Destroy CHT tests (details)
797. NLopt Metric optimization changes to help with poor behavior with error (details)
798. Added some more documentation for cmake build (details)
799. Added grid attachment for processor IDs during parallel runs. PX prints (details)
800. Hopefully fixed the last memory bug in the regression tests (details)
801. Append number of function evaluations to NLopt .adapthist output (details)
802. CHT and cut-cell documentation for BC's, Outputs, Meshing, EBG File, and (details)
803. Added debug information for PXMatchingParallelPartition (details)
804. fixing small error for NLopt function evaluation printing in .adapthist (details)
805. Modifications to golden standard for NLopt optimization (details)
806. Fixing regression test that was using golden standards (details)
807. part 1 viz fix, fixed null pointers, segmentation fault cleaned up with (details)
808. Fixed the last memory problem in the regression tests (details)
809. Setting things up so the nightly memcheck updates the outstanding (details)
810. Fixed up the website scripts so nightly outstanding commits are updated (details)
811. Adding the weekly memcheck (details)
812. Fixed bugs in the nightly and weekly memcheck scripts (details)
813. region attribute unit test, comp/scal function modifications (details)
814. Finally fixed PXMachingParallelPartition by removing the error checking (details)
815. Changed the timeout for the regression tests (details)
816. Hopefully PXMatchingParallelPartition is finally fixed (details)
817. Added the extra arguments CalcA_uv to do dilitation based artificial (details)
818. Fixing bug to allow NLopt initial scaling to work with CutCells (details)
819. Added some dilation shock capturing unit tests (details)
820. Added a dilation artificial viscosity function and unit tested the (details)
821. Parallelize CHT Region Information, parallel region unit tests, (details)
822. Dilation Jacobians with respect the gradients seem to be working (details)
823. Updated physics parallelization in BC info (details)
824. Fixed bug in website outstandint giles. Added more Dilation tesing. (details)
825. Interface heat flux calculations (details)
826. Fixed segfault problem when transfering solution from old grid to new in (details)
827. Added metric-biased gaussian fcn & unit test (details)
828. Addd distance calculation to PXTecpot (details)
829. Forgot to commit a file (details)
830. Null pointers (details)
831. removed print statement (details)
832. Added to ReadFuncFile unit test and added supporting func files in new (details)
833. Fixed memory leaks in PXOutput_PXU (details)
834. Set Gold Standard for LocalSolveSurrogate to False (details)
835. Revived a CutCell 3d regression test (details)
836. Fixed nan issue when doing shock capturing with adaptation (details)
837. Dilation based adapatation is linearized and implemented. (details)
838. Forgot the the truth file for Wedge regression test (details)
839. Forgot more files for the wedge regression test (details)
840. Distance Function for CutCells, Viz Fix, CHT additions (details)
841. Python scripts for running cases at multiple dof and porder (details)
842. Set PX_ARC to current environment (details)
843. Fixed the nightly memcheck. Updated scripts to run the nighty memcheck (details)
844. Forgot to commit some files. Updated weekly memcheck to also run upon a (details)
845. Hopefully fixed up all the new build test scripts (details)
846. One last fix to the new build test scripts (details)
847. fixed regression knob parameter, fixed environment variables for (details)
848. One more fix to the build scripts (details)
849. fixed CHT regression test memcheck error, adjusted regression memcheck (details)
850. minor changes to RunAdapt.py (details)
851. Updated the regression test scripts to generate more informative errors (details)
852. null pointers, solid wall spec (details)
853. Dissabled Linear Multigrid for P=0. UMFPACK uses gobs of memory (details)
854. Forgot to commit header files (details)
855. quad adaptation mechanics, still making it look pretty, unit tests on (details)
856. increase max number of samples for 3d (details)
857. this should fix the memcheck error at short term, but I want to remove (details)
858. Fixed coverage checking to work with floating point numbers (details)
859. regtest failures prints to screen (details)
860. hybrid support for PXSpline needed for adaptation (details)
861. fixed warning (details)
862. Fixed the namechange of the unit test coverage file (details)
863. source derivative initialization (uninitialized terms caused NaN's in (details)
864. cleaned adaptation and removed old implementation, tomorrow unit testing (details)
865. forgot to adjust arguments to a function (details)
866. added interface skin friction integrand (details)
867. testing for splining routines (also allow diff't qorder and elem types) (details)
868. obviously forgot header file (details)
869. overallocate NodesOnFace to highest qorder+1 on face group (details)
870. utils to support Gaussian weighted integration (details)
871. delete pxu for now. (details)
872. git-svn-id: file:///home/svnroot/projectx/trunk@10801 (details)
873. quad adaptation unit tests and found a massive bug in state transfer (details)
874. removed warnings (details)
875. forgot a warning (details)
876. forgot to destroy pg in all unit tests so lots of memory remained in (details)
877. fixed some of the remaining memory in unit tests (details)
878. ...and this should fix other remaining memory (forgot to deallocate quad (details)
879. freed memory (details)
880. Fixed issues with Nightly and Weekly memchecks overwriting each others (details)
881. valgrind suppressions (details)
882. release metricR upon destruction of ElemProp (details)
883. dummy (details)
884. uninitialized Stil caught by compiler on mac (details)
885. fixed a memory leak when writing out adapt_pxa...but not the one that (details)
886. Changed things so the error reports are only cleaned out on a (details)
887. Removed tabs, trying to trigger a build (details)
888. Fixed bug in MetricGaussian (details)
889. distance function calculation for face groups with both triangles and (details)
890. Gaussian weighted line integral. (details)
891. forgot to add it (details)
892. One more t (details)
893. Tweaking run scripts for the situtation where qhull and tetgen websites (details)
894. allow initial states to be set for CHT problems (details)
895. forgot a file (details)
896. Changed coverage checks to allow regtest coverage to decrease, but the (details)
897. Still tweaking the coverage (details)
898. should fix regtest memcheck failure (details)
899. One more fix to the total coverage (details)
900. memory fix (details)
901. wrong commit (details)
902. Added vertex based NLopt optimization with penalty terms, unit tests, (details)
903. initializations, init adapt state, SA viz fixes (details)
904. Updated adapt run script, post-processing plotting tools, cluster (details)
905. CHT RANS scalar fixes (details)
906. Made changes to compile Oliver's Compressible library (but not the unit (details)
907. Change to eliminate warnings (details)
908. Prealloc initializations (details)
909. Gaussian line integral, unit test on J_UX (details)
910. Error Indicator print out now properly reflects the value used in the (details)
911. fixing previous mistake (details)
912. util updates, NULL pointers (details)
913. Changed the way step matrices are initialized when current dof > initial (details)
914. Corrected 2D assumption in step matrix initialization (details)
915. check elem node distribution! and ursa expects .grm for metric (details)
916. fixed a few bugs for Gaussian weighted line integral (details)
917. Removed redundant function calls from PXUnit2CuTest scripts. Changed the (details)
918. Added interface output calculations (details)
919. Modify region in line integrals so that they can be evaluated for CHT (details)
920. calculate scalar line in solid regions for CHT (details)
921. Cleaned up SA stuffs + more pings tests (details)
922. One more tweak to the PX website log format (details)
923. Another fix to the formatting (details)
924. More formatting tweaks (details)
925. Still messing up the formatting... (details)
926. Fixed one more bug in the logging (details)
927. Started working on an adapt hist plotter (details)
928. Fixed compiler warnings (details)
929. Fixed up the adapt hist plotter. Should work pretty generally now (details)
930. I think plotadpathist is working rather generally now (details)
931. More tweaks to plotters (details)
932. Null vertex metric averaging/growth, CHT viz, tecplot utility for CHT (details)
933. Added falgs to dissable LEDA and NLOPT (details)
934. Fixed the compile errors (details)
935. PX changes for cell quality ratio, face quality ratio, and node movement (details)
936. default cut-cell quadrature to magic points (details)
937. Fixing small mistake that did not allow compiling without NLOPT (details)
938. unit test memcheck timeout set to 2 hours (details)
939. Gaussian point smoothing for pressure, temperature, nutilde.  More to (details)
940. PXOutput unit test (details)
941. Fixed PXOutput unit test bugs (details)
942. fixed the bug in boundary integral that was making regression tests fail (details)
943. Added support for non-linear viscosity (i.e. A matrix = f(U)) in the (details)
944. Updated header file, and fixed the seg fault. (details)
945. Fixed a bug in PXGridInfo. Fixed PXTecplot for mixed element 2D meshes. (details)
946. Turning the KeepBackVertices flag on for bamg broke all reg tests. (details)
947. Fixed more memory leaks. (details)
948. The reg tests that failed should be fixed now. (details)
949. cht output function calc (details)
950. Added "Flux" BC support, and more unit tests to the scalar conv-diff (details)
951. CHT interface consistent discretization added in comments, CHT viz (details)
952. Null pointers, CHT viz unit test updates (details)
953. detect if cubes in the mesh and force (p+1)^dim as dof factor (details)
954. uncommented declaration that was an unused variable? (details)
955. check vertices for ForceCube, not nodes (details)
956. again needed to uncomment PenaltyMethod (details)
957. Added _stackcheck to check static memory problems (details)
958. Updated cmake documentation (details)
959. Forgot to update the ctest lable for stackcheck (details)
960. Boundary smoothing (details)
961. Added ProjectX_stackcheck (details)
962. added 2D Burger's (u_t + u u_x - nu (u_xx + u_yy)) PDE (details)
963. bug fix in PXEigenDecomSymmetricPacked: both input matrix and local copy (details)
964. added Burgers subdirectory (details)
965. fixed useles compiler warning (details)
966. dummy commit (details)
967. Included missing header file so that PX compiles properly with debug (details)
968. Changing edge based post-processing step to eigenvalue based (details)
969. Eliminating a golden standard parameter that does not exist (details)
970. Cleaned up things to compile on OS X (details)
971. Updated PXIntersect2d_PXU to not cast double to int in unit tests (details)
972. Updating PX to be able to use git revisions as well as svn revisions (details)
973. Fixed up store revision to properly work now with both git and svn (details)
974. Relaxed tolerance on a unit test (details)
975. Added scripts for regression testing with jenkins. Other general cleanup (details)
976. Fixed clang compiler warnings (details)
977. Fixing floating point failures with the intel compiler (details)
978. Updated jenkins build scripts (details)
979. Fixed more floating point problems with unit test (details)
980. Fixed a whole bunch of unit tests for intel (details)
981. Tweaking jenkins scripts (details)
982. One more tweak to the jenkins scripts (details)
983. Was missing parmetis in the jenkins env (details)
984. Fixed memory problem with PXOutput_PXU. Changed coverage file location (details)
985. Still tweakig jenkins scripts (details)
986. Added OSX and Intel valgrind suppression files. Need to fill the intel (details)
987. Created intel suppressions for valgrind (details)
988. Added intel suppression. Fixed memleak in unit test (details)
989. Fixed more memory problems and added more suppressions (details)
990. Updated CMake to remove warnings by cmake 3.0 (details)
991. Functions added for reservoir simulations (analytical model and real) (details)
992. Fixed bug in ProjectX_developer.sh. Updated ProjectX_Commit.sh to make (details)
993. Updated ProjectX_developer.sh to also commit DeveloperEmailAdresses when (details)
994. reset default: WriteParameterFile = True (details)
995. reset default: WriteParameterFile = True (details)
996. scalar conv diff (details)
997. scalar conv diff (details)
998. Hopefully fixed the compile error (details)
999. Hopefully fixed the compile error (details)
1000. Added an option to not perform metric optimization (details)
1001. Looking for clang and clang-3.4 in SetCompiler.cmake (details)
1002. Added git ignore file. Added madcap parameters. (details)
1003. created new library for porous media (details)
1004. Updated testing to run in parallel (details)
1005. Updated regression test dependencies so they can be executed in parallel (details)
1006. Using homebrew version of lcov (details)
1007. Increased regression test timeout (details)
1008. created the PorousMedia library, and added functions/variables to the (details)
1009. Forgot to increase the timeout on commit_check (details)
1010. Changed commit_check to clean OUT first. Added to gitignore for (details)
1011. Modifed pxbamg* files to use the SavePrefix. This allows regression (details)
1012. Missed a regression test dependency (details)
1013. Added RelWithDebInfo as a dir name option. (details)
1014. Fixed parallel test execution dependency (details)
1015. Fixed regtest memcheck dependencies. Updated storerevision to only show (details)
1016. Added inviscid and viscous flux terms to PorousMedia library (details)
1017. added unit tests to PorousMedia library (details)
1018. changes to updatefraction (details)
1019. changes to unit tests (details)
1020. fixed memory leaks in unit tests (details)
1021. This is hopefully the scalar fix now (details)
1022. Fixed the regression tests because of calling PXE_BC_ScalarRobin with (details)
1023. Missed a merge conflict (details)
1024. changed default to write parameters file (details)

commenting out a currently unused function so i can pass dumb warning count



git-svn-id: file:///home/svnroot/projectx/trunk@9930 2d3a0d64-3a26-0410-b007-c58072358898

bah didnt comment out the unit test of the function i removed in last commit


git-svn-id: file:///home/svnroot/projectx/trunk@9931 2d3a0d64-3a26-0410-b007-c58072358898

mesh edge struct is parallelized, and a 3D parallel unit mesh is added

git-svn-id: file:///home/svnroot/projectx/trunk@9932 2d3a0d64-3a26-0410-b007-c58072358898

mesh edge struct is parallelized, and a 3D parallel unit mesh is added

git-svn-id: file:///home/svnroot/projectx/trunk@9933 2d3a0d64-3a26-0410-b007-c58072358898

1. PartitionMesh is ready. 2. CheckMesh now works with parallel mesh. 3. Parallel unit test for cpp files now working. 4. Intersecting each partitioned mesh is now working through treating ghosted faces as boundary faces

git-svn-id: file:///home/svnroot/projectx/trunk@9934 2d3a0d64-3a26-0410-b007-c58072358898

Added unit test for PXParallelCutCell3d.cpp so that the shell script can work...to make status green

git-svn-id: file:///home/svnroot/projectx/trunk@9935 2d3a0d64-3a26-0410-b007-c58072358898

forgot to include Grid unit test

git-svn-id: file:///home/svnroot/projectx/trunk@9936 2d3a0d64-3a26-0410-b007-c58072358898

bugfixes to the 3d distance function (surface grid & regular versions).  Multiple jumps now works correctly.  Also who knew ElementNeighbor orders elem,egrp whereas every other function orders egrp, elem?!

Added a new BC: "VelocityTanHeat" which sets:
1) 0 normal velocity
2) 0 normal derivaive of tangential velocities
3) 0 heat flux
For a total of Dim+1 (independent, I think/hope) BCs.  This BC MAY be more appropriate for symmetry plane/flow tangency BCs than the current "FlowTan" BC.  Emphasis on "MAY."



git-svn-id: file:///home/svnroot/projectx/trunk@9937 2d3a0d64-3a26-0410-b007-c58072358898

parallelized grid data

git-svn-id: file:///home/svnroot/projectx/trunk@9938 2d3a0d64-3a26-0410-b007-c58072358898

Unparallelize zerod coded, but need testing

git-svn-id: file:///home/svnroot/projectx/trunk@9939 2d3a0d64-3a26-0410-b007-c58072358898

Unified adaptation in parallel now (partially) supported.  'Partially' because the local solves are all in parallel, but everything else (optimization problem, DOF calculation, etc.) is all serial.  Fixed some small bugs with unsteady adaptation as well in the process.  Also protected so parallel calls that were previously unprotected (added parallel check before call)

git-svn-id: file:///home/svnroot/projectx/trunk@9940 2d3a0d64-3a26-0410-b007-c58072358898

Missing change to header file in previous commit

git-svn-id: file:///home/svnroot/projectx/trunk@9941 2d3a0d64-3a26-0410-b007-c58072358898

Missed a couple warnings compiling with intel.

git-svn-id: file:///home/svnroot/projectx/trunk@9942 2d3a0d64-3a26-0410-b007-c58072358898

Corrected bug in PXStateSmooth that woukd kick back an error for the terminal state adjoint because it had no previous adjoint states.  Hard coded the error integration factor to 1 until I can get the correct one sorted out...equally weighting timesteps should give a reasonable result until then.

git-svn-id: file:///home/svnroot/projectx/trunk@9943 2d3a0d64-3a26-0410-b007-c58072358898

Dummy commit to rerun tests

git-svn-id: file:///home/svnroot/projectx/trunk@9944 2d3a0d64-3a26-0410-b007-c58072358898

1) regenerated 3d_Periodic_TEST b/c existing .bc file did not make sense with the matching .pbc file (made the wrong faces periodic)
2) added 3d_Periodic_P2_TEST which tests restarting from a periodic solution

3) changes to allow for higher Q elements when making a grid periodic.  Assumption is that the faces are flat even though higher order nodes are present.  (Normal.c, ReadWriteGrid)
4) changes to ReadWriteGrid (ReadGrid & WriteGrid) to allow for restarting from a periodic grid/solution.  minor revision 11.




git-svn-id: file:///home/svnroot/projectx/trunk@9945 2d3a0d64-3a26-0410-b007-c58072358898

bugfix to 3D distance function.  Was going array out of bounds but valgrind didn't catch it b/c I was always magically ending up in the function stack.



git-svn-id: file:///home/svnroot/projectx/trunk@9946 2d3a0d64-3a26-0410-b007-c58072358898

Modified p+1 unsteady State 0 (initial condition) to use function if that was used to init the p State.

git-svn-id: file:///home/svnroot/projectx/trunk@9947 2d3a0d64-3a26-0410-b007-c58072358898

3D intersection now parallel, and unparallelization working, with one unit test added

git-svn-id: file:///home/svnroot/projectx/trunk@9948 2d3a0d64-3a26-0410-b007-c58072358898

git-svn-id: file:///home/svnroot/projectx/trunk@9949 2d3a0d64-3a26-0410-b007-c58072358898

updated weekly tests to use sunhu

git-svn-id: file:///home/svnroot/projectx/trunk@9950 2d3a0d64-3a26-0410-b007-c58072358898

Cut cell 3d now works in parallel, at least for all the unit tests. Now need a real test case..

git-svn-id: file:///home/svnroot/projectx/trunk@9951 2d3a0d64-3a26-0410-b007-c58072358898

Now cut cell works in parallel entirely...still need to add a regression test

git-svn-id: file:///home/svnroot/projectx/trunk@9952 2d3a0d64-3a26-0410-b007-c58072358898

Adding capability to compute a 'global' unsteady truth surrogate.  mostly implemented...untested but passes unit and regression tests on my machine for existing tests

git-svn-id: file:///home/svnroot/projectx/trunk@9953 2d3a0d64-3a26-0410-b007-c58072358898

nothing changed

git-svn-id: file:///home/svnroot/projectx/trunk@9954 2d3a0d64-3a26-0410-b007-c58072358898

nothing commited

git-svn-id: file:///home/svnroot/projectx/trunk@9955 2d3a0d64-3a26-0410-b007-c58072358898

Corrections to my previous commit

git-svn-id: file:///home/svnroot/projectx/trunk@9956 2d3a0d64-3a26-0410-b007-c58072358898

Update to madcap script generated by PX

git-svn-id: file:///home/svnroot/projectx/trunk@9957 2d3a0d64-3a26-0410-b007-c58072358898

Fixed a bug when testing PartitionMesh after compiling in serial; and a bug in WriteCutCell; and should have fixed the email system for px failure..

git-svn-id: file:///home/svnroot/projectx/trunk@9958 2d3a0d64-3a26-0410-b007-c58072358898

Utilities to extract states from a pxa (intended initially for unsteady...may need to keep some other attachments that I'm currently trashing), and a utility to compute some statistics for unsteady sensitivities that I've had lying around and just want committed.

git-svn-id: file:///home/svnroot/projectx/trunk@9959 2d3a0d64-3a26-0410-b007-c58072358898

added a new unified adaptation framework based on the vertex-based optimization procedure; fixed a bug in distance fucntion calculation for local solver

git-svn-id: file:///home/svnroot/projectx/trunk@9960 2d3a0d64-3a26-0410-b007-c58072358898

git-svn-id: file:///home/svnroot/projectx/trunk@9961 2d3a0d64-3a26-0410-b007-c58072358898

1D adaptation with fixed fraction adaptation (PXAdaptHP)

git-svn-id: file:///home/svnroot/projectx/trunk@9962 2d3a0d64-3a26-0410-b007-c58072358898

Modified 1d mesh modification (mesh operations in adaptation) to use either the continuous or element metric, dependent on which is available (preference to continuous metric).  Because one-d is so straight forward, I simply map the domain to a metric transformed space and make a uniform grid

git-svn-id: file:///home/svnroot/projectx/trunk@9963 2d3a0d64-3a26-0410-b007-c58072358898

1. Now when MPI returns error, PX tells which line generates this error. 2. Fixed the issue where a ghosted cut face might have different # of quad points from the two partitions by picking one of the two partitions

git-svn-id: file:///home/svnroot/projectx/trunk@9964 2d3a0d64-3a26-0410-b007-c58072358898

1. Now when MPI returns error, PX tells which line generates this error. 2. Fixed the issue where a ghosted cut face might have different # of quad points from the two partitions by picking one of the two partitions

git-svn-id: file:///home/svnroot/projectx/trunk@9965 2d3a0d64-3a26-0410-b007-c58072358898

Change the cutcell case to use one-level overlap ASM

git-svn-id: file:///home/svnroot/projectx/trunk@9966 2d3a0d64-3a26-0410-b007-c58072358898

Now partition the mesh before cutting based on bounding box check

git-svn-id: file:///home/svnroot/projectx/trunk@9967 2d3a0d64-3a26-0410-b007-c58072358898

Now partition the mesh before cutting based on bounding box check

git-svn-id: file:///home/svnroot/projectx/trunk@9968 2d3a0d64-3a26-0410-b007-c58072358898

Added global minimum and maximum edge lengths for MADCAP/EPIC

git-svn-id: file:///home/svnroot/projectx/trunk@9969 2d3a0d64-3a26-0410-b007-c58072358898

Timing is added into cutcell

git-svn-id: file:///home/svnroot/projectx/trunk@9970 2d3a0d64-3a26-0410-b007-c58072358898

Fixed a bug in configure for cxxopt

git-svn-id: file:///home/svnroot/projectx/trunk@9971 2d3a0d64-3a26-0410-b007-c58072358898

KDTree: added statistic functions to evaluate the quality of the KDTree
ReadWriteGrid: textgrid2grid prints more debugging info
Grid: relaxed node position checks in periodic grids
      fixed bug where periodic grids would not be PXCopyGrid'd correctly
Diff: fixed bug where pxa1-pxa2 attachment would not be written out




git-svn-id: file:///home/svnroot/projectx/trunk@9972 2d3a0d64-3a26-0410-b007-c58072358898

Added a dummy unit test that causes the KDTree statistics function to be called.  Hopefully that's enough for status green



git-svn-id: file:///home/svnroot/projectx/trunk@9973 2d3a0d64-3a26-0410-b007-c58072358898

Changed weekly test to one test just to see if this works..

git-svn-id: file:///home/svnroot/projectx/trunk@9974 2d3a0d64-3a26-0410-b007-c58072358898

Fixed weekly test...SSBJ truth file regenerated, IRK4 test commented out for now because unsteady file format has been all changed (Josh?), cut cell rans 2d test commented out because distance function not working for cut cell (Eric?)

git-svn-id: file:///home/svnroot/projectx/trunk@9975 2d3a0d64-3a26-0410-b007-c58072358898

Now cut cell can handle a case where a partiioned mesh has disjoint sets, and some set can have no intersection

git-svn-id: file:///home/svnroot/projectx/trunk@9976 2d3a0d64-3a26-0410-b007-c58072358898

forgot to recover some of the weekly tests

git-svn-id: file:///home/svnroot/projectx/trunk@9977 2d3a0d64-3a26-0410-b007-c58072358898

Fixed bug in 3d distance function

git-svn-id: file:///home/svnroot/projectx/trunk@9978 2d3a0d64-3a26-0410-b007-c58072358898

hopefully this doesn't break the build test and webpage scripts...I'm attempting to add the subversion log file to the website

git-svn-id: file:///home/svnroot/projectx/trunk@9979 2d3a0d64-3a26-0410-b007-c58072358898

Must copy the files I want accesible to the web server.

git-svn-id: file:///home/svnroot/projectx/trunk@9980 2d3a0d64-3a26-0410-b007-c58072358898

1d advecting-diffusing gaussian bump now includes diffusion in the exact solution.  Slight modification to 1d plottting matlab script

git-svn-id: file:///home/svnroot/projectx/trunk@9981 2d3a0d64-3a26-0410-b007-c58072358898

Fix of bug in 9981

git-svn-id: file:///home/svnroot/projectx/trunk@9982 2d3a0d64-3a26-0410-b007-c58072358898

Fixed the issue where solution file doesn't have solution in it for parallel cases...

git-svn-id: file:///home/svnroot/projectx/trunk@9983 2d3a0d64-3a26-0410-b007-c58072358898

Changed how the shadow type is read and written, because the length of element type array has been changed

git-svn-id: file:///home/svnroot/projectx/trunk@9984 2d3a0d64-3a26-0410-b007-c58072358898

Residual: disabling residual component timing printouts in CalculateResidual
RunSolver: Adding timing brackets around PXAdaptIteration and adding a "sum" (JulieTime) that prints PSequencing and AdaptIteration once per adaptiter



git-svn-id: file:///home/svnroot/projectx/trunk@9985 2d3a0d64-3a26-0410-b007-c58072358898

forgot some #ifdefs



git-svn-id: file:///home/svnroot/projectx/trunk@9986 2d3a0d64-3a26-0410-b007-c58072358898

modified SA stuff in new compressible, added generation of pbc file in PXExtrude2DGrid

git-svn-id: file:///home/svnroot/projectx/trunk@9987 2d3a0d64-3a26-0410-b007-c58072358898

Fixed warnings in SA for NewCompressible

git-svn-id: file:///home/svnroot/projectx/trunk@9988 2d3a0d64-3a26-0410-b007-c58072358898

Changed where unsteady coefficients are used and set for unsteady error estimates and parameter sensitivities.

git-svn-id: file:///home/svnroot/projectx/trunk@9989 2d3a0d64-3a26-0410-b007-c58072358898

Fixes, clean up, and a missing file from r9989

git-svn-id: file:///home/svnroot/projectx/trunk@9990 2d3a0d64-3a26-0410-b007-c58072358898

undid SA modification in PXCompressible.c

git-svn-id: file:///home/svnroot/projectx/trunk@9991 2d3a0d64-3a26-0410-b007-c58072358898

Removed redundant ElementNodeArray

git-svn-id: file:///home/svnroot/projectx/trunk@9992 2d3a0d64-3a26-0410-b007-c58072358898

Started adding in Hexes

git-svn-id: file:///home/svnroot/projectx/trunk@9993 2d3a0d64-3a26-0410-b007-c58072358898

Corrected parallelization of unsteady output window types, adding some padding for square windows, corrected decrementing of dual unsteady solution, and fixed argument checking for unsteady state smoothing.

git-svn-id: file:///home/svnroot/projectx/trunk@9994 2d3a0d64-3a26-0410-b007-c58072358898

FaceOrientation now implemented for hexes (quad faces).  Added unit tests for PXFaceOrientation related functions.  Need to double check (w/Laslo) that my node orderings are consistent.



git-svn-id: file:///home/svnroot/projectx/trunk@9995 2d3a0d64-3a26-0410-b007-c58072358898

-Corrected line parsing in parallel regression testing script to remove non-numeric data in the last line of the hist file
-Corrected GRE deallocation for local GREs (prolongated states) in error estimat
-Removed extraneous output from solution transfer



git-svn-id: file:///home/svnroot/projectx/trunk@9996 2d3a0d64-3a26-0410-b007-c58072358898

ReadWriteGrid: ReadGrmFile and ReadGriFile are now dimension & element type independent.*
NOTE: these grid formats now have the following restrictions:
1) double types can be printed with AT MOST 22 digits (i.e., %.22E)
2) the total amt of whitespace CANNOT exceed 20 spaces PER entry in each line (e.g., a line with 5 numbers can have 100 whitespaces max)
3) there can be NO extraneous carriage returns (i.e., totally blank lines)
4) "descriptor" lines (e.g., ones that describe num elements, qorder, dimension, etc) cannot exceed PX_MAXSTRLEN in size

Basically, these i/o functions use fgets()+strtol() or strtod() instead of fscanf() now.

*GrmFile cannot yet read hexes b/c TextGrid does not store face type information for boundary faces

utils: added ehliutest2.c for my convenience



git-svn-id: file:///home/svnroot/projectx/trunk@9997 2d3a0d64-3a26-0410-b007-c58072358898

missed a file in the last commit, hope commiting 2x in about 1min doesn't break the thing



git-svn-id: file:///home/svnroot/projectx/trunk@9998 2d3a0d64-3a26-0410-b007-c58072358898

lol, didn't know warning counter cared about things in the utils directory



git-svn-id: file:///home/svnroot/projectx/trunk@9999 2d3a0d64-3a26-0410-b007-c58072358898

Order: Node0D now has nbf = 1 and qorder = 1.  Previously, nbf returned -1 and qorder returned an error.



git-svn-id: file:///home/svnroot/projectx/trunk@10000 2d3a0d64-3a26-0410-b007-c58072358898

looks like my last commit didn't change an associated unit test, oops.  poor josh, v10000 wasn't green.



git-svn-id: file:///home/svnroot/projectx/trunk@10001 2d3a0d64-3a26-0410-b007-c58072358898

Now each partition can write its own intersection and quad. For that, writemesh outputs edge info and parallel info, and cc3d files have more information

git-svn-id: file:///home/svnroot/projectx/trunk@10002 2d3a0d64-3a26-0410-b007-c58072358898

Added Normal Reference, started enabling hexes

git-svn-id: file:///home/svnroot/projectx/trunk@10003 2d3a0d64-3a26-0410-b007-c58072358898

added hexes in normal

git-svn-id: file:///home/svnroot/projectx/trunk@10004 2d3a0d64-3a26-0410-b007-c58072358898

Modified PXNormalReference.h

git-svn-id: file:///home/svnroot/projectx/trunk@10005 2d3a0d64-3a26-0410-b007-c58072358898

fixing simple memory leak in PXOutwardNormal
valgrind should be clean now?



git-svn-id: file:///home/svnroot/projectx/trunk@10006 2d3a0d64-3a26-0410-b007-c58072358898

Fixed the issue when a patch edge intersects a ghosted face twice...

git-svn-id: file:///home/svnroot/projectx/trunk@10007 2d3a0d64-3a26-0410-b007-c58072358898

1. Fixed a read/write issue for parallel cutcell. 2. Initialize nENode = 0, now pxviz should not initembsurf for a non-cutcell case

git-svn-id: file:///home/svnroot/projectx/trunk@10008 2d3a0d64-3a26-0410-b007-c58072358898

Forgot to change a pxu

git-svn-id: file:///home/svnroot/projectx/trunk@10009 2d3a0d64-3a26-0410-b007-c58072358898

Put unit grids test back in, modified face orientation for tets to match idea of flip/rotation implemented for quads, added 1 and 27 hex unit grids, modified grid check to handle quads

git-svn-id: file:///home/svnroot/projectx/trunk@10010 2d3a0d64-3a26-0410-b007-c58072358898

committing on top of laslo's condition red :(  99% sure i have unit tests for everything here

Bullets 1) and 2) are IMPORTANT.  PLEASE READ.

This commit pertains mostly to being able to read/write hex meshes, and A LOT of cleanup in PXReadWriteGrid.c.  Primarily making functions dimension & element type indepenent and cleaning up/clarifying how the hash table system works.
1) grm file format redefined.  Instead of PXE_Basisshape, each bfgrp and egrp prints
   is PXE_Shape (node, edge, trinagle, quad, tet, or hex) instead.
   The relevant unit grids have been changed.  Sorry if this breaks your grm files, just fix it manually; it's not a big deal.

2) TextGridStruct's bface struct now carries around "PXE_Shape faceShape;".  3D grids could have quad or triangle boundary faces, so we need a way to discern this.  Each bfacegroup can only have one shape in it (so cannot have 1 bfacegroup with quad and triangle faces).  ReadGrmFile now stores this info off based on the input file; other readers store an appropriate shape for the kinds of elements they can handle.

EMPHASIS: EACH BOUNDARY FACE GROUP CAN ONLY HAVE ONE TYPE OF FACE SHAPE.

3) AreaQ1Triangle changed to return the signed area in 2D (via cross product).  This is consistent with VolumeQ1Tet; it is used to verify that the input node ordering is correct in TextGrid2Grid.

Similarly, textgrid2grid now also checks for consistent node ordering of 1D elements.

4) TextGrid2Grid mostly rewritten.  Hash table functions basically all rewritten, but the basic functionality is the same.  (If performance is ever an issue, there are much more efficient ways of implementing a hash.)  Function is now dimension & PXE_Shape independent.

DistanceFunctionSurfGrid: some unit tests to flesh out testing of the neighbor jump system (needs more tests though)



git-svn-id: file:///home/svnroot/projectx/trunk@10011 2d3a0d64-3a26-0410-b007-c58072358898

added very basic .h entries for the two hexahedra unit grids



git-svn-id: file:///home/svnroot/projectx/trunk@10012 2d3a0d64-3a26-0410-b007-c58072358898

hexes run, though by no means correctly

git-svn-id: file:///home/svnroot/projectx/trunk@10013 2d3a0d64-3a26-0410-b007-c58072358898