Changes

Summary

Updated refine mesher calls (details)
Updated plotadapthist with more options (details)
Updated jenkins files (details)
Changed BAMG to use KeepBackVerticies. Set a limit on f for the (details)
Added CimLib as another 3D mesher. Only writing files for now. (details)
Added an limit on the trace of the rate tensor (details)
Updated CimLib writer (details)
Computing step matrix based on SVD of element Jacobian. (details)
Added commented out print statments for RateTensor (details)
Generalized rate tensor calculation to use singular value decomposition. (details)
Swapped simple average of step matrix for an affine average of metrics. (details)
Updated all regression tests for the new method of computing step (details)
Removed background mesh from EPIC. (details)

Commit f2cfa97c04172e915dc5a6e9fddb07c3964e752e by galbramc Updated refine mesher calls
The file was modified	src/Adaptation/PXWriteMesherFiles.c
Commit d1f61206e3e221d7362ab297a55a542d145bb431 by galbramc Updated plotadapthist with more options
The file was modified	utils/plotadapthist
Commit 85bee231f7704274bb00a420a76cc1bae8a715e1 by galbramc Updated jenkins files
The file was modified	utils/jenkins/jenkins_env.sh
The file was modified	utils/ProjectX_developer.sh
Commit d3bd289d4f1f3530d42ed43cae2bc592fa203e26 by galbramc Changed BAMG to use KeepBackVerticies. Set a limit on f for the RateTensor calculation.
The file was modified	src/PXErrEst.c
The file was modified	src/PXRunSolver.c
The file was modified	src/PXHPAdaptDirect.c
The file was modified	test/CMakeLists.txt
The file was modified	src/PXHPAdaptDirect_PXU.c
The file was modified	src/Adaptation/PXWriteMesherFiles.c
The file was modified	src/ScalarConvDiff/PXScalarConvDiff.c
Commit 00e1526be736497846721bd35dbb223749ef0a30 by galbramc Added CimLib as another 3D mesher. Only writing files for now.
The file was modified	src/Fundamentals/PX.c
The file was modified	include/Fundamentals/PX.h
The file was modified	include/PXWriteMesherFiles.h
The file was modified	include/Grid/PXReadWriteGrid.h
The file was modified	src/PXHPAdapt.c
The file was modified	src/Grid/PXReadWriteGrid.c
The file was modified	src/Adaptation/PXWriteMesherFiles.c
Commit 5618dc57939e8f8cb2c040273ed600ae5b0e239d by galbramc Added an limit on the trace of the rate tensor
The file was modified	src/PXHPAdaptDirect.c
Commit dedda84775daa640ee593f2b8f8aa595ef30233d by galbramc Updated CimLib writer
The file was modified	src/Grid/PXReadWriteGrid.c
The file was modified	src/Adaptation/PXWriteMesherFiles.c
Commit 368a94fb578593b5f2cec0110edd637978abfbf8 by galbramc Computing step matrix based on SVD of element Jacobian.
The file was modified	include/GeneralParameters/PXAdaptationParameters.h
The file was modified	include/PXHPAdaptDirectStruct.h
The file was modified	include/Reference/PXMeshSizeReference.h
The file was modified	include/Reference/PXMetric.h
The file was modified	src/Reference/PXMeshSizeReference.c
The file was modified	src/PXHPAdaptDirect.c
The file was modified	src/PXHPAdaptDirect_PXU.c
The file was modified	src/Reference/PXMetric.c
The file was modified	include/Fundamentals/PXLapack.h
The file was added	matlab/step2D.m
The file was modified	src/Fundamentals/PXLapack.c
The file was modified	src/Fundamentals/PXLapack_PXU.c
The file was modified	src/Adaptation/PXWriteMesherFiles.c
The file was added	matlab/PlotMetricEllipse.m
Commit cb1901ba112ceb390867670ffa32866f638d6df1 by galbramc Added commented out print statments for RateTensor
The file was modified	src/PXHPAdaptDirect.c
Commit 505a805a911f637d3ed4ac712dec166060c2cb82 by galbramc Generalized rate tensor calculation to use singular value decomposition.
The file was modified	src/PXHPAdaptDirect.c
The file was modified	include/Reference/PXMetric.h
The file was modified	src/Reference/PXMetric.c
The file was modified	src/PXHPAdaptDirect_PXU.c
Commit b9a6ab0830275345f941121ad9a4cf135aa3409a by galbramc Swapped simple average of step matrix for an affine average of metrics.
The file was modified	src/PXHPAdaptDirect.c
The file was modified	src/PXHPAdaptDirect_PXU.c
Commit 034ddc1d7a56f5a6678755f4ddd4b4f3df9d8aa2 by galbramc Updated all regression tests for the new method of computing step matricies associated with subelement sampling.
The file was modified	test/TrueMetric/Scalar2d_UniAdapt_TEST_Metric_a01.attach
The file was modified	test/TrueMetric/naca_Euler2d_UniAdapt_TEST_Metric_a01.attach
The file was modified	test/TrueMetric/Scalar2d_UniAdapt_TEST_Metric_a00.attach
The file was modified	test/trueOUT/naca_NavierStokes2d_UniAdapt_TEST.hist.TRUE
The file was modified	test/trueOUT/CutCell_rae2822_CHT_TEST.hist.TRUE
The file was modified	test/TrueMetric/CutCell_Circle_Interface_Scalar2d_UniAdapt_Metric_a01.attach
The file was modified	test/TrueMetric/RAE2822_RANS_Subsonic_NoMaxQuad_UniAdapt_TEST_Metric_a00.attach
The file was modified	test/TrueMetric/RAE2822_RANS_Transonic_UniAdapt_TEST_Metric_a00.attach
The file was modified	test/CMakeLists.txt
The file was modified	test/TrueMetric/CutCell_Circle_Interface_Scalar2d_UniAdapt_Metric_a00.attach
The file was modified	test/trueOUT/Scalar2d_UniAdapt_TEST.hist.TRUE
The file was modified	test/trueOUT/naca_Euler2d_AdaptNLOPTVert_TEST.hist.TRUE
The file was modified	test/TrueMetric/CutCell_rae2822_RANS_M0p3_Re6p5e6_UniAdapt_TEST_Metric_a00.attach
The file was modified	test/TrueMetric/Scalar2d_UniAdapt_TEST_Metric_a02.attach
The file was modified	test/trueOUT/RAE2822_RANS_Transonic_UniAdapt_TEST.hist.TRUE
The file was modified	test/TrueMetric/RAE2822_RANS_Subsonic_UniAdapt_TEST_Metric_a00.attach
The file was modified	test/trueOUT/RAE2822_RANS_Subsonic_UniAdapt_TEST.hist.TRUE
The file was modified	test/TrueMetric/Scalar2d_UniAdapt_TEST_Metric_a04.attach
The file was modified	test/trueOUT/CHT_FlatSlab.hist.TRUE
The file was modified	test/TrueMetric/RAE2822_RANS_Subsonic_UniAdapt_TEST_Metric_a01.attach
The file was modified	test/TrueMetric/diamond_Euler2d_UniAdapt_TEST_Metric_a00.attach
The file was modified	test/TrueMetric/naca_Euler2d_UniAdapt_TEST_Metric_a00.attach
The file was modified	test/trueOUT/naca_Euler2d_AdaptNLOPTVertWPenalty_TEST.hist.TRUE
The file was modified	test/trueOUT/Scalar2d_UniAdapt_Unsteady2_TEST.hist.TRUE
The file was modified	test/TrueMetric/Wedge_PDEShock_Adapt_TEST_Metric_a00.attach
The file was modified	test/TrueMetric/Wedge_PDEShock_Adapt_TEST_Metric_a01.attach
The file was modified	test/TrueMetric/naca_Euler2d_AdaptNLOPTVert_TEST_Metric_a00.attach
The file was modified	test/TrueMetric/naca_NavierStokes2d_UniAdapt_TEST_Metric_a01.attach
The file was modified	test/TrueMetric/CHT_FlatSlab_TEST_Metric_a00.attach
The file was modified	test/trueOUT/naca_Euler2d_UniAdapt_TEST.hist.TRUE
The file was modified	test/TrueMetric/Scalar2d_UniAdapt_TEST_Metric_a03.attach
The file was modified	test/TrueMetric/naca_NavierStokes2d_UniAdapt_TEST_Metric_a00.attach
The file was modified	test/TrueMetric/RAE2822_RANS_Transonic_UniAdapt_TEST_Metric_a01.attach
The file was modified	test/TrueMetric/CutCell_Circle_Interface_StarShape_Jump_Metric_a00.attach
The file was modified	test/trueOUT/CutCell_rae2822_RANS_M0p3_Re6p5e6_UniAdapt_Test.hist.TRUE
The file was modified	test/trueOUT/CutCell_Circle_Interface_Scalar2d.hist.TRUE
The file was modified	test/trueOUT/RAE2822_RANS_Subsonic_NoMaxQuad_UniAdapt_TEST.hist.TRUE
The file was modified	test/TrueMetric/CutCell_rae2822_CHT_Metric_a00.attach
The file was modified	test/trueOUT/Wedge_PDEShock_Adapt_TEST.hist.TRUE
The file was modified	test/trueOUT/diamond_Euler2d_UniAdapt_TEST.hist.TRUE
The file was modified	test/TrueMetric/diamond_Euler2d_UniAdapt_TEST_Metric_a01.attach
The file was modified	test/trueOUT/CutCell_Interface_StarShape_Jump_TEST.hist.TRUE
The file was modified	test/TrueMetric/naca_Euler2d_AdaptNLOPTVertWPenalty_TEST_Metric_a00.attach
The file was modified	test/TrueMetric/RAE2822_RANS_Subsonic_NoMaxQuad_UniAdapt_TEST_Metric_a01.attach
Commit 0fe579d44825be969fa0e62c63e034d99223eedd by galbramc Removed background mesh from EPIC.
The file was modified	src/Adaptation/PXWriteMesherFiles.c
The file was modified	src/PXHPAdaptDirect.c