Changes

#269 (Oct 10, 2020, 1:52:09 AM)

  1. First pass at structuring TCNE pde, a little messy — blsc / detail
  2. TCNE stuff — ksabo / detail
  3. relocate QauxvInterpret forward declaration in prep for 3D stuff — shunz / detail
  4. Added basic stuff for 3D IBL — shunz / detail
  5. Minor cleanup — shunz / detail
  6. Initial pass on PDEIBL3D — shunz / detail
  7. Filled in 3D IBL closure with fully 3D components set to zero — shunz / detail
  8. Added BCNone for IBL3D — shunz / detail
  9. added a working version of sandbox case for IBL3D — shunz / detail
  10. Added a sheet grid of triangles in 3D for IBL3D — shunz / detail
  11. Added instantiation — shunz / detail
  12. Intermediate commit — shunz / detail
  13. Working on integrands for first 3D IBL case — shunz / detail
  14. More fixes to integrand classes for IBL3D — shunz / detail
  15. Fixed instantiations for IBL3D — shunz / detail
  16. Add explicit instantiations and fix typos in closure class — shunz / detail
  17. Initial version of local Cartesian basis construction for 3D IBL — shunz / detail
  18. Minor cleanup — shunz / detail
  19. Fix constuction of q1 and q2 vectors in case of stagnation flows — shunz / detail
  20. Add velocity gradient calculation in cell integrand of 3D IBL — shunz / detail
  21. Refactor and add a 2D stagnation flow test case — shunz / detail
  22. Add a 3D quad grid — shunz / detail
  23. Update cmake list for unit grid test — shunz / detail
  24. Fix typo in 3D quad sheet grid — shunz / detail
  25. fix bug in qauxv gradient calculation in 3D IBL cell integrand — shunz / detail
  26. Fix the scale and dimension of dissipation integral in 3D integral — shunz / detail
  27. fix a typo in thickness identity — shunz / detail
  28. Add more options to 3D IBL stagnation flow case, including quad grid, solution initialization, — shunz / detail
  29. one more bug fix in cell integrand for 3D IBL — shunz / detail
  30. Bugfix in calculation of trace unit normal vector for area cells in 3D — shunz / detail
  31. Add Nishida's crossflow closure.  Add pyrite check of stagnation flow case for 3D IBL.  Minor addition for debugging in PDEIBL3D — shunz / detail
  32. fix dependents of refactoring of GetSolnDofCell_IBL — shunz / detail
  33. Add a 3D flat plate source panel method but haven't tested yet — shunz / detail
  34. intermediate commit: minor clenaup and add guards. — shunz / detail
  35. intermediate commit: working on 3D coupled IBL for torpedo cass — shunz / detail
  36. add 3x3 equation system — shunz / detail
  37. typo fix. add partial instantiations for system 3x3 vector and matrix types — shunz / detail
  38. add linesearch data type for 3x3 equation system — shunz / detail
  39. add missing include — shunz / detail
  40. intermediate commit: fix many compiling errors in the way of running torpedo case for IBL3D. switching computer to continue the work... — shunz / detail
  41. refactor projection to Qauxi — shunz / detail
  42. add interior trace integrand for projection onto Qauxi — shunz / detail
  43. minor fix — shunz / detail
  44. add instantiations for IBL3D torpedo case — shunz / detail
  45. add instantiations for coupled IBL3D — shunz / detail
  46. remove unnecessary assert — shunz / detail
  47. fix for coupled IBL case to compile and run — shunz / detail
  48. fix uninitialized dummy DOFs — shunz / detail
  49. fix setDOFFrom in Qauxv 3D (missing q_y previously) — shunz / detail
  50. Coupled 3D IBL case converged on some simple variants of the torpedo case: linear and mildly nonlinear radial velocity distribution with attached laminar BLs — shunz / detail
  51. Tried triangle grid as well: fine on radially linear velocity distribution but couldn't converge on a more nonlinear case — shunz / detail
  52. cleaned up unused stuff — shunz / detail
  53. refactor SetIBLoutputCellGroup to accommodate both 3D and 2D IBL — shunz / detail
  54. remove outdated include — shunz / detail
  55. more refactoring of SetIBLoutputCellGroup for 3D IBL.  working progress.  switching computer — shunz / detail
  56. intermediate commit. switching computer. — shunz / detail
  57. enable tecplot output for 3D IBL — shunz / detail
  58. added PyDict options for Verbose and writeMarketMatrix for UMFPACK — allmaras / detail
  59. add full-state BC for IBL3D with corresponding boundary trace integrand.  verified on an uncoupled Blasius case — shunz / detail
  60. add a coupled IBL3D Blasius case — shunz / detail
  61. implement PTC for coupled IBL 3x3 system — shunz / detail
  62. add commented-out stuff for turning off laminar amplification and lag equations in IBL3D — shunz / detail
  63. fix typo in commented-out stuff — shunz / detail
  64. enable rotated mesh for IBL3D torpedo case — shunz / detail
  65. set up a torpedo with grid aligned with xy axes.  turned off laminar amplification and lag equations [need to be brought back after testing purely laminar BLs] — shunz / detail
  66. minor change to test case — shunz / detail
  67. minor refactoring on Blasius inflow BC params — shunz / detail
  68. rename test cases — shunz / detail
  69. speed up panel-related jacobian calculation using cached influence matrix in place of surrealized qauxifld — shunz / detail
  70. add jacobian timing for refactoring purpose — shunz / detail
  71. add similar (to DBL3) Falkner-Skan inflow bc for IBL3D with non-constant inflow state. set up a tornado case with rotated xy grid to compare with DBL3 — shunz / detail
  72. minor refactoring of test cases — shunz / detail
  73. remove trivial zero z velocity component to speed up panel method — shunz / detail
  74. minor refactoring — shunz / detail
  75. typo fix — shunz / detail
  76. precompute inviscid velocity for panel, which resulted in O(10) speedup in related residual calculation. fix DOF indexing in residual/jacobian precomputation — shunz / detail
  77. define macro to comment off some lines for timing/refactoring — shunz / detail
  78. minor comments — shunz / detail
  79. add ping test for coupled IBL in 3x3 block system — shunz / detail
  80. attempt to mirror tets in XField3D_Box_Tet_X1_WakeCut — allmaras / detail
  81. reverted to original prism-split coding; remainder of code is hard-coded for the — allmaras / detail
  82. fix typo in Cf2 closure, although it didn't change the torpedo case results much — shunz / detail
  83. Fix dot for VectorBlock — galbramc / detail
  84. added PyDict control of wake & Kutta Nitsche parameters — allmaras / detail
  85. Added test of sourceCoarse and sourceFine for RANSSA with artificial viscosity. — blsc / detail
  86. Added missing sourceCoarse and sourceFine functions from pressure gradient sensor and added unit test — blsc / detail
  87. added PyDict solve check option to UMFPACK; currently commented out actual check — allmaras / detail
  88. Fixes for checking the UMFPACK solve — galbramc / detail
  89. Missed adding PDEEulermitAVDiffusion2D.h to the commit. This file has specialized versions of sourceCoarse and sourceFine for a param that is a H-tensor and distance function. — blsc / detail
  90. add a wall term to dissipation relation of Nishida's closure, although it didn't affect things much — shunz / detail
  91. add a test case of fx67-k-170 airfoil — shunz / detail
  92. minor edit to output filenames at convergence failures — shunz / detail
  93. resolve merge conflict — shunz / detail
  94. changed default flux of IBL to LF flux — shunz / detail
  95. add a test case for drag polar — shunz / detail
  96. ran drag polar cases — shunz / detail
  97. refactored reference speed in transition model — shunz / detail
  98. typo fix — shunz / detail
  99. rename working directory — shunz / detail
  100. refator characteristic speed for PTC — shunz / detail
  101. refator characteristic speed for PTC — shunz / detail
  102. Add unit tests demonstrating that the step matrix calculation is stable to scaling — hcarson / detail
  103. update pyrite files — shunz / detail
  104. refactor 3D IBL closure API to allow for alternative closure models — shunz / detail
  105. save 3D closure relations in a separate header — shunz / detail
  106. add neural net closure for 3D IBL — shunz / detail
  107. run drag polar on finer grids — shunz / detail
  108. switch to run on acdl desktop — shunz / detail
  109. fix memory leak warning caused by accessing index -1 — shunz / detail
  110. minor update — shunz / detail
  111. mucking with PETSc for IBL3 — shunz / detail
  112. instantiate MKL_PARDISO solver for matrix block 3x3 — shunz / detail
  113. tried MKL_PARDISO solver for IBL3 — shunz / detail
  114. Adding test that Explicitly calculating the step from the metric directly is not unstable. Cases in 2D and 3D, showing stability to an AR of 2^10 in 3D, and 2^64 in 2D. — hcarson / detail
  115. minor typo fix — shunz / detail
  116. fix formatting — shunz / detail
  117. add mitLG BC for IBL3 — shunz / detail
  118. minor refactoring — shunz / detail
  119. switch to the same input parameters as DBL3 — shunz / detail
  120. add LF flux to IBL3 — shunz / detail
  121. Changes to ErrorModel to allow for the new exact nodal metric calculation — hcarson / detail
  122. Changes to ErrorModel to allow for the new exact nodal metric calculation — hcarson / detail
  123. pre merge add.... wth? — hcarson / detail
  124. add Dirichlet mitLG inflow BC to a Blasius flow test case — shunz / detail
  125. Jenkins fix — hcarson / detail
  126. reverting to the develop branch of ErrorModel — hcarson / detail
  127. fixes to case — hcarson / detail
  128. fixes to case — hcarson / detail
  129. intermediate commit: added 4-equation neural net closure model.  working on 4-equation IBL3D pde class — shunz / detail
  130. remove extraneous tamplate keyword — shunz / detail
  131. Various changes for arthur: Commented the adjoint_wo_p things from SolverInterface_VMSD_BR2, reducing the memory reqs. Made the Deltawing adapts more uniform and fit with the plan. Added the Solve case for the VMSD delta wing. — hcarson / detail
  132. added soruce terms for the lateral curvature equation of IBL3 — shunz / detail
  133. removed re-definition — shunz / detail
  134. refactored and added PDE and BC for four-equation 3D IBL class.  added a starting point for torpedo case — shunz / detail
  135. separated classes of 3D IBL and IBLFourEqn — shunz / detail
  136. generalized templates in IBL3-related integrands — shunz / detail
  137. added instantiations for four-equation 3D IBL — shunz / detail
  138. fixed instantiation typo — shunz / detail
  139. turned on verbose linesearch printout — shunz / detail
  140. added a visous-only Blasius case for 4-equation 3D IBL.  added a missing include — shunz / detail
  141. refactored reference coordinate gradient for speedup.  add/edit comments for clarity — shunz / detail
  142. typo fix: gradqe*E_qesq.  minor edits — shunz / detail
  143. turned off printout in unit testing — shunz / detail
  144. cosmetic changes — shunz / detail
  145. refactored neural net closure models: H22, Hd1, Hc2 — shunz / detail
  146. added output for four-equation 3D IBL — shunz / detail
  147. unit tests and associated modifications — ksabo / detail
  148. fixed auxi equation (wall transpiration): previous mass flux missed crossflow component — shunz / detail
  149. previous fix to wall transpiration (auxi equation) didn't fix.  it is now fixed.  added unit test — shunz / detail
  150. minor tweak — shunz / detail
  151. minor cleanup — shunz / detail
  152. add velocity gradient output to IBL — shunz / detail
  153. add instantiation — shunz / detail
  154. added IBL3 closure relations in the form of analytic formulae — shunz / detail
  155. tested something with git (still learning this thing) — ksabo / detail
  156. salt deposit #1 (updated files I accidentally erased...) — ksabo / detail
  157. refactored neural net closure implementation — shunz / detail
  158. recoded jacobianMasterState method, still need to test it — ksabo / detail
  159. added a set of IBL3 closure models based on analytic formulae — shunz / detail
  160. restored four-equation neural net closure to its original working state — shunz / detail
  161. switch to using 4-equation IBL3 closure based on analytic formulae.  results are similar or slightly better than neural net closure — shunz / detail
  162. fixed a typo (which fortunately wasn't used yet).  added exception throws — shunz / detail
  163. fixed include filename — shunz / detail
  164. removed redundant exceptions — shunz / detail
  165. Q1DConservative for TCNE is functionally completed (only needs aesthetic changes at this point) — ksabo / detail
  166. refactored four-eqn IBL3 curve-fit closure — shunz / detail
  167. conformed to vera check: should not use "using namespace" in header files — shunz / detail
  168. fixed unit tests for after API refactoring — shunz / detail
  169. fixed unit tests for the  previous API refactoring — shunz / detail
  170. fixed ping tests: finite difference step size — shunz / detail
  171. added ping test for four-eqn IBL3 — shunz / detail
  172. added Blasius flow test case for four-eqn IBL3D. some cleanup — shunz / detail
  173. added include — shunz / detail
  174. added includes — shunz / detail
  175. checked four-eqn IBL3D on Blasius case and stagnation radial flow — shunz / detail
  176. added a stagnation flow toy case.  mucked with IBL3 for torpedo case — shunz / detail
  177. fixed toy case to keep up with API refactoring — shunz / detail
  178. added missing include related to MPI — shunz / detail
  179. suppresed file dump in system test — shunz / detail
  180. added assertions — shunz / detail
  181. add some derivates to the IBL3 output — shunz / detail
  182. relaxed pyrite tolerance — shunz / detail
  183. relaxed pyrite tolerance for intel compiler.  speed up ping test to avoid time-out — shunz / detail
  184. renamed output — shunz / detail
  185. added and refactored IBL3 output — shunz / detail
  186. make verbose_ if-tests consistent throughout — allmaras / detail
  187. fixed screen dump for checkSolve_ when residuals above tolerance — allmaras / detail
  188. added option to dump solution at each Newton iteration — allmaras / detail
  189. added pressure gradient for space-time — allmaras / detail
  190. added instantiations, etc, needed for log(p) variables with look-up porosity/permeability tables — allmaras / detail
  191. added grid-Laplacian artificial viscosity for pressure; currently hard-coded diffusion coefficient — allmaras / detail
  192. trying to fix gnu9 compiler warning — shunz / detail
  193. added "#include <utilities>" for std::move; added unit test for VectorBlock_3 — allmaras / detail
  194. fixed vera line-length squawk — allmaras / detail
  195. fixed vera line-length squawk — allmaras / detail
  196. fixed vera line-length squawk — allmaras / detail
  197. add a new curve fit model based on low-dissipative DBL3 data — shunz / detail
  198. allow for uncoupled/viscou-only IBL3 solution by tweaking the panel method — shunz / detail
  199. fixed VectorBlock_3 unit test; made ::m() and ::n() static, so 2, 3, and 4 are all consistent — allmaras / detail
  200. forgot to save changes in the last commit... — shunz / detail
  201. relaxed Jenkins timeout threshold for some large ping tests — shunz / detail
  202. minor tweak — shunz / detail
  203. speed up ping test by turning off some redundant sub-block checks — shunz / detail
  204. fix cppcheck error — shunz / detail
  205. speed up ping test by turning off tests on some sub-blocks of the jacobian — shunz / detail
  206. added directory creation for output files — allmaras / detail
  207. Don't use python2 with jenkins — galbramc / detail
  208. removed old version of adjoint-compatible potential solver for Hershey wing — allmaras / detail
  209. temporarily disabled tests involving artificial viscosity fluxes if USE_PRESSURE_AV defined — allmaras / detail
  210. make VectorBlock test-suite names unique (so make unit_build works) — allmaras / detail
  211. added unit tests for circulation integrations — allmaras / detail
  212. added circulation integrations for lift & roll as functional outputs — allmaras / detail
  213. Add Q3 and Q4 elements to Gmsh IO — galbramc / detail
  214. clean-up of circulation-base functional code/test; added drag but #ifdef'ed out, as it's not complete — allmaras / detail
  215. intermediate commit: working on hooking up PETSc for block algebraic equation system — shunz / detail
  216. Fix finding macOS Accelerate BLAS — galbramc / detail
  217. cppcheck fixes for nightly — allmaras / detail
  218. moving back to develop — hcarson / detail
  219. add empty definition to fix undefined reference in weekly test — shunz / detail
  220. add empty definition to fix undefined reference in weekly test — shunz / detail
  221. add empty definition to fix undefined reference in weekly test — shunz / detail
  222. vera fix — hcarson / detail
  223. added a new set of closure relations based on low-dissipation DBL3 data — shunz / detail
  224. updated RthCf1 correlation coefficient — shunz / detail
  225. fixed call to undefined function — shunz / detail
  226. removing unneeded test — hcarson / detail
  227. minor updates to TCNE stuff (getting back into it) — ksabo / detail
  228. added mitLG BC for four equation IBL3D — shunz / detail
  229. fixing unused var — hcarson / detail
  230. Update for latest version of refine — galbramc / detail
  231. missing space — hcarson / detail
  232. Added vpr11@mit.edu to DeveloperEmailAddresses — vpr11 / detail
  233. End of week dump. — ksabo / detail
  234. added pressure jump into source for AV sensor in two-phase porous media — allmaras / detail
  235. minor changes to SPE10 test case: added #ifdef's for log(pn), table lookup; changed — allmaras / detail
  236. added #define label for pressure jump in AV sensor source; updated unit test — allmaras / detail
  237. added new closure option (but commented off for now). updated system test case for four-eqn IBL3D on stagnation flow BL — shunz / detail
  238. zero guard for smoothabs0 — allmaras / detail
  239. updated unit tests to incorporate pressure jumps in sensor source for two-phase AV — allmaras / detail
  240. Use 2 MPI processors on macOS with Jenkins. Make TetGen optional again. — galbramc / detail
  241. Fix for finding boost — galbramc / detail
  242. Some chemsitry model unit tests - need before source term testing. — ksabo / detail
  243. Fix for 2 MPI procs on macOS — galbramc / detail
  244. Various CMake fixes — galbramc / detail
  245. Fix BuildBoost — galbramc / detail
  246. vibrational relaxation time unit tests — ksabo / detail
  247. LIP solver can consume CAPS mesh — galbramc / detail
  248. Update minimum ESP version to 1.18 — galbramc / detail
  249. Relax EGADS version requirement — galbramc / detail
  250. Fix link error — galbramc / detail
  251. Missed a file — galbramc / detail
  252. More link error fixes — galbramc / detail
  253. More link fixes — galbramc / detail
  254. Exlicit Exception instantiations. Bias for Python 3 with CMake — galbramc / detail
  255. added continuousGlobalMap() for block 2x2 AES — shunz / detail
  256. PETSc now works for coupled IBL3 block AES 3x3 — shunz / detail
  257. minor refactoring — shunz / detail
  258. cleaned up and merged sandbox cases — shunz / detail
  259. use reference velocity scale consistently — shunz / detail
  260. turned on quasi-2D closure relations for 3-eq 3D IBL — shunz / detail
  261. Missed one instantiation. More optional TetGen fixes — galbramc / detail
  262. Various small fixes — galbramc / detail
  263. added exceptions for petsc MPI implementations for block AES 3x3 — shunz / detail
  264. turned off 3D IBL transition and lag equations for system test (for now) — shunz / detail
  265. turned off some TBD MPI stuff in petsc block AES 3x3 to avoid compiling errors — shunz / detail
  266. fixed unused variable warnings — shunz / detail
  267. fix compiling error in sandbox case — shunz / detail
  268. Added quasi-2D turbulent closure to four-eqn IBL3 formulation — shunz / detail
  269. fixed deprecated macro — shunz / detail
  270. First set of updates from cleaning up develop branch. Contains code and tests related to adding a spatially varying a-field (i.e. from previous adapt soln) in Homotopy — blsc / detail
  271. Removed sourceCoarse and sourceFine in lieu of sourceTraceJump — galbramc / detail
  272. Move Surreal into SANS namespace — galbramc / detail
  273. Forgot a file — galbramc / detail
  274. Missed MPI SurrealS — galbramc / detail
  275. Add missing include — galbramc / detail
  276. Remove SurrealS(Real,Real) constructor — galbramc / detail
  277. More fixes for modified Surreal — galbramc / detail
  278. Fix warnings — galbramc / detail
  279. Setup to run VMSDBR2 on fixed Joukowski meshes — galbramc / detail
  280. Fix uninitialized variable warnings — galbramc / detail
  281. Fix vera warning — galbramc / detail
  282. src/LinearAlgebra/ — blsc / detail
  283. First pass at prototyping a globally constrained algebraic equation set — blsc / detail
  284. Updates to globally constrained equations to include condensation of matrix in PETSc — blsc / detail
  285. Updates for first round of parallelizing the homotopy — blsc / detail
  286. Parallel homotopy appears to be working — blsc / detail
  287. EGADS interface refactoring. Added meanline blade. — galbramc / detail
  288. Fixes for EGTess — galbramc / detail
  289. More fixes to the EGADS cleanup — galbramc / detail
  290. More EGADS fixes — galbramc / detail
  291. Fix compile error — galbramc / detail
  292. Fix warning — galbramc / detail
  293. Fix more warnings — galbramc / detail
  294. A few tweeks on the homotopy and 3D set up — blsc / detail
  295. Updated interface for globally constrained equations so the jacobian for the pde and the constraints are in seperate functions — blsc / detail
  296. The small problem for static condensation is calculated on one processor then broadcast, that way there are on finite precision inconsistencies — blsc / detail
  297. Added template parameter to determine if (PETSc) should do a shur complement from block 2x2. Note, if we're not using PETSc, then the block matrix is solved as is. This is because the shur complement is only a work around for parallel communication issues. — blsc / detail
  298. ... because if you hard code tecplot for 4 levels of grid refinement on output you get a 300Gb tecplot file in 3D ... — blsc / detail
  299. Refactor CubicCamber. Add Normal vector field. — galbramc / detail
  300. Forgot files — galbramc / detail
  301. Add missing includes — galbramc / detail
  302. Number of global constraints is now a runtime option. The global coupling uses a CRS matrix structure, as opposed to MatrixD, since the CRS structure is already there. — blsc / detail
  303. Fixed bug with small system decomposition. The matrix was incorrectly sized for runtime constraints — blsc / detail
  304. Fix field normal vector check for parallel — galbramc / detail
  305. Resolved issues that came up due to merging — blsc / detail
  306. First pass at prototyping a globally constrained algebraic equation set — blsc / detail
  307. Updates to globally constrained equations to include condensation of matrix in PETSc — blsc / detail
  308. Updates for first round of parallelizing the homotopy — blsc / detail
  309. Parallel homotopy appears to be working — blsc / detail
  310. A few tweeks on the homotopy and 3D set up — blsc / detail
  311. Updated interface for globally constrained equations so the jacobian for the pde and the constraints are in seperate functions — blsc / detail
  312. The small problem for static condensation is calculated on one processor then broadcast, that way there are on finite precision inconsistencies — blsc / detail
  313. Added template parameter to determine if (PETSc) should do a shur complement from block 2x2. Note, if we're not using PETSc, then the block matrix is solved as is. This is because the shur complement is only a work around for parallel communication issues. — blsc / detail
  314. ... because if you hard code tecplot for 4 levels of grid refinement on output you get a 300Gb tecplot file in 3D ... — blsc / detail
  315. Number of global constraints is now a runtime option. The global coupling uses a CRS matrix structure, as opposed to MatrixD, since the CRS structure is already there. — blsc / detail
  316. Fixed bug with small system decomposition. The matrix was incorrectly sized for runtime constraints — blsc / detail
  317. Clean up after merging from develop — blsc / detail
  318. More merging issues — blsc / detail
  319. Added RotorSource for Euler equations — galbramc / detail
  320. Various small fixes — galbramc / detail
  321. Fix compile error — galbramc / detail
  322. A few more fixes — galbramc / detail
  323. Fix unit test error — galbramc / detail
  324. Bulk of unit tests done. — ksabo / detail
  325. Update refine libraries — galbramc / detail
  326. src/ — blsc / detail
  327. Missing unit tests and ability to daisy chain globally constrained algebraic equation sets — blsc / detail
  328. Missed an update for the serial version of PETSc — blsc / detail
  329. Further speed improvements — galbramc / detail
  330. Fix VMSDBR2 adjoint bug. Update refine build. — galbramc / detail
  331. Some fixes for the Rotor source — galbramc / detail
  332. Trying DG Normal vector field — galbramc / detail
  333. Correction to Rotor source — galbramc / detail
  334. One more fix to Rotor source — galbramc / detail
  335. One more fix — galbramc / detail
  336. updated file names — ksabo / detail
  337. updated file names (round 2) — ksabo / detail
  338. Fixed warnings and other minor things — ksabo / detail
  339. 150 char line error fix — ksabo / detail
  340. used brackets for matrix call, fixed now — ksabo / detail
  341. Some cleanup of PETSc Shur solve — galbramc / detail
  342. Fixes for MKL with Block 2x2 — galbramc / detail
  343. Bug fixes for homotopy and some 3D bugs — blsc / detail
  344. Fixed a few bug (undefined param and timeout) — blsc / detail
  345. fixed stack-buffer-overflow error in temperature data structures — ksabo / detail
  346. Missing instantiations, BC that only existed for local testing purposes removed. — blsc / detail
  347. fixed read access error from electron indexing bug — ksabo / detail
  348. fixed compiler warnings — ksabo / detail
  349. dropped tol to 1e-11 from 1e-12, removed extra {} that may have been causing an issue — ksabo / detail
  350. renamed test suite (explicitly added TCNE to name) - was causing conflict error — ksabo / detail
  351. SANS_Nightly fix, efma line compiler warning deleted — ksabo / detail
  352. updated reverse reaction rate temperature calculations — ksabo / detail
  353. Add trace quadrature checking to isValidCell_VMSD. — hcarson / detail
  354. Refactored global constraintes — galbramc / detail
  355. Forgot files — galbramc / detail
  356. Compile fixes — galbramc / detail
  357. Fix unit test — galbramc / detail
  358. Added a new ParamFieldBuilder specialization for (log-permeability, porosity, gen-H) param fields. Added a unit test. — savithru / detail
  359. added pde/IncompressibleNS — allmaras / detail
  360. added 1D incompressible NS for fully developed channel flow with sansLG Robin BCs — allmaras / detail
  361. added 2nd weighting parameter to weightBC; 1st parameter is for Dirichlet / adjoint state, — allmaras / detail
  362. added 2nd weighting parameter to weightBC; missed one file — allmaras / detail
  363. added Robin_sansLG BC catagory — allmaras / detail
  364. IO file check flag -> true — allmaras / detail
  365. 1D incompressible NS solver for fully developed channel flow — allmaras / detail
  366. bug fixes — allmaras / detail
  367. Major refactor of the two-phase PDE classes to support a (log-permeability, porosity) param-field. The artificial viscosity classes use a (log-permeability, porosity, log-H) param-field. — savithru / detail
  368. Updated ErrorEstimate_DGBR2 instantiations — savithru / detail
  369. Updated tests. All unit and system tests compile now. — savithru / detail
  370. added test for -Identity() initializer — allmaras / detail
  371. Fix so -DLA::Identity() works properly — galbramc / detail
  372. added BCs for 1D RANS-SA for channel flow — allmaras / detail
  373. unit tests for 1D RANS-SA for channel flow — allmaras / detail
  374. unit tests: missed one — allmaras / detail
  375. unit test output pattern test files — allmaras / detail
  376. 1D RANS-SA test case for fully developed channel flow -- preliminary — allmaras / detail
  377. updated test case — allmaras / detail
  378. More refactoring to get sandbox cases to compile. — savithru / detail
  379. Fixed a unit test. — savithru / detail
  380. Missed a sandbox case. — savithru / detail
  381. Reverting include path for boost output_test_stream — savithru / detail
  382. made algebraic eqn-set files more consistent between Galerkin and Galerkin_Stabilized — allmaras / detail
  383. instantiated VectorS<2> output — allmaras / detail
  384. Updated discretizations and PDE interfaces to use both paramL and paramR when evaluating fluxAdvectiveUpwind or fluxAdvectiveUpwindSpaceTime. This is important for the two-phase flow PDE, where the temporal flux depends on the porosity param-field value (which can be heterogeneous). — savithru / detail
  385. Update 2D ugrid reader for UNFORATTED (.r8.ugrid) files. — galbramc / detail
  386. Fix warning — galbramc / detail
  387. Fix warning — galbramc / detail
  388. added Robin BC dot product tests; currently commented out, since they fail to compile — allmaras / detail
  389. added Tensor-Vector dot-products: e.g. dot( VectorX, TensorMatrixQ ) — allmaras / detail
  390. clean up: MatrixS<D,D,MatrixQ> -> TensorMatrixQ — allmaras / detail
  391. needed additional #include's — allmaras / detail
  392. added ND ctor for BCs: BC( PDE, BCArgs ) — allmaras / detail
  393. added dist parameters to certain functions; added jacobianMasterState; code clean-up — allmaras / detail
  394. added skin friction / drag output for 1D incompressible NS channel flow — allmaras / detail
  395. added #if's to try different combinations of '(gradphi . K . nHat) betaBC^t rsdBC'; — allmaras / detail
  396. Updated FV-TPFA discretization to work for heterogeneous properties + some cleanup. — savithru / detail
  397. Added missing includes — savithru / detail
  398. removed dot-products supporting (K . nHat) operator in Robin_sansLG BCs, and reverted — allmaras / detail
  399. added IncompressibleNSLib to unit test builders — allmaras / detail
  400. latest sandbox tests for 1D fully developed channel flow — allmaras / detail
  401. Updated global contraints. Solve rotor speed at specified power. — galbramc / detail
  402. Compile fixes — galbramc / detail
  403. Add missing files — galbramc / detail
  404. added optional parameter to output_gnuplot for number of points per element (default remains 11) — allmaras / detail
  405. code cleanup for 1D NS/RANS — allmaras / detail
  406. solution function for 1D RANS: analytic law-of-the-wall for SA — allmaras / detail
  407. missed a pattern file — allmaras / detail
  408. missed a unit test file — allmaras / detail
  409. updated 1D RANS fully developed channel flow case to (a) work, (b) output useful data, — allmaras / detail
  410. Fix all output functionals to properly work in parallel — galbramc / detail
  411. name change for test suite to avoid link conflict for 'make unit' — allmaras / detail
  412. Fix compile error — galbramc / detail
  413. Compile fix — galbramc / detail
  414. Missing include — galbramc / detail
  415. More missing includes — galbramc / detail
  416. More missing includes — galbramc / detail
  417. reverted to depricated include directory for <boost/test/unit_test.hpp> — allmaras / detail
  418. More missing include fixes — galbramc / detail
  419. Upgrade to AFLR 10.8.7 — galbramc / detail
  420. Update AFLR libraries — galbramc / detail
  421. src/ — blsc / detail
  422. Updated BC::isValidState interface so mitState BCs can check if the boundary state generated is also valid — blsc / detail
  423. Removed file that didn't work out and shouldn't have been commited — blsc / detail
  424. Fix AFLR library order — galbramc / detail
  425. Formatting fixes — blsc / detail
  426. Missing instantiation and arguments flipped causing a unit test to fail — blsc / detail
  427. Fixes for AFLR4 and EGADS updates — galbramc / detail
  428. Fix for wake sheets — galbramc / detail
  429. Various small fixes — galbramc / detail
  430. Allow specified interior traces — galbramc / detail
  431. Compile fixes. Allow UnionJack to work in parallel — galbramc / detail
  432. Fix compile error — galbramc / detail
  433. removed 1D incompressible NS channel flow test case -- won't compile due to double — allmaras / detail
  434. Fixes for parallel specified interior traces. Added ParkMMS and EntropyProduction output. — galbramc / detail
  435. Forgot files — galbramc / detail
  436. Fixes for parallel interior traces — galbramc / detail
  437. Fix uninitialized data — galbramc / detail
  438. Fix intel warning — galbramc / detail
  439. Added new SPE10 cases for time-marching FV and DGBR2+AV. — savithru / detail
  440. Fix parallel DG DOF indexing for multiple cell groups — galbramc / detail
  441. fixes for jenkins squawks — allmaras / detail
  442. Fix EG zombies — galbramc / detail
  443. missing #include <vector> — allmaras / detail
  444. fixed warning for un-used typedef — allmaras / detail
  445. added isValidState with (x,time,nx,q) params for Dirichlet — allmaras / detail
  446. Hardening ReadSolution_PX to throw uniformly across MPI if rank 0 fails to load the file. Can now use try catch around restart blocks! — hcarson / detail
  447. fixed uninitialized variables in test — allmaras / detail
  448. removed redundant instantiation — allmaras / detail
  449. removed unneeded print statements and a typo — hcarson / detail
  450. Nightly fixes — galbramc / detail
  451. Various small fixes — galbramc / detail
  452. Fix to erroneous logic — hcarson / detail
  453. Make safe_at work for any container type, and reduce code duplication — hcarson / detail
  454. Nightly fixes — galbramc / detail
  455. More nightly fixes — galbramc / detail
  456. fixed nightly warning on unused variable — allmaras / detail
  457. Relax execution time — galbramc / detail
  458. Changed isValid to check: qbar + qp at cell quads, and qbar, qbar + qpL and qbar + qpR for interior traces. These are the only values used in flux evaluation — hcarson / detail
  459. Fix accross spelling. Fix AFLR3 to distribute in parallel. Update interior trace parallel construction. — galbramc / detail
  460. Reduce maximum grid size for PDESourceOnly_Projection_btest — galbramc / detail
  461. Add latest PETSc version — galbramc / detail
  462. Nightly fix — galbramc / detail
  463. Various CMake fixes — galbramc / detail
  464. Fix for building Tetgen — galbramc / detail
  465. Don't ues intel compiler to compile TetGen — galbramc / detail
  466. Nightly fix — galbramc / detail
  467. Relax tolerance for nightly test — galbramc / detail
  468. Update refine, TetGen, and AFLR. Added ParameterDictList for a list of dictionaries. Rename MeanlineBlade to CamberBlade. — galbramc / detail
  469. Correct AFLR version — galbramc / detail
  470. Forgot tetgen patch — galbramc / detail
  471. Various fixes — galbramc / detail
  472. Fix library order — galbramc / detail
  473. Relax ping tolerance — galbramc / detail
  474. Comment out file dump — galbramc / detail
  475. Nightly fixes — galbramc / detail
  476. Add python UI for body force calculations. — galbramc / detail
  477. Fix compile errors — galbramc / detail
  478. Fix warning — galbramc / detail
  479. Various compile fixes — galbramc / detail
  480. Some small fixes — galbramc / detail
  481. Fix interior trace partitioning — galbramc / detail
  482. Some small fixes — galbramc / detail
  483. Added the option to specify a reference permeability for the well model. Updated SPE10 test cases to use the permeabilities at the well locations. — savithru / detail
  484. Weekly fix — galbramc / detail

#268 (Oct 5, 2020, 8:00:27 AM)

  1. First pass at structuring TCNE pde, a little messy — blsc / detail
  2. TCNE stuff — ksabo / detail
  3. relocate QauxvInterpret forward declaration in prep for 3D stuff — shunz / detail
  4. Added basic stuff for 3D IBL — shunz / detail
  5. Minor cleanup — shunz / detail
  6. Initial pass on PDEIBL3D — shunz / detail
  7. Filled in 3D IBL closure with fully 3D components set to zero — shunz / detail
  8. Added BCNone for IBL3D — shunz / detail
  9. added a working version of sandbox case for IBL3D — shunz / detail
  10. Added a sheet grid of triangles in 3D for IBL3D — shunz / detail
  11. Added instantiation — shunz / detail
  12. Intermediate commit — shunz / detail
  13. Working on integrands for first 3D IBL case — shunz / detail
  14. More fixes to integrand classes for IBL3D — shunz / detail
  15. Fixed instantiations for IBL3D — shunz / detail
  16. Add explicit instantiations and fix typos in closure class — shunz / detail
  17. Initial version of local Cartesian basis construction for 3D IBL — shunz / detail
  18. Minor cleanup — shunz / detail
  19. Fix constuction of q1 and q2 vectors in case of stagnation flows — shunz / detail
  20. Add velocity gradient calculation in cell integrand of 3D IBL — shunz / detail
  21. Refactor and add a 2D stagnation flow test case — shunz / detail
  22. Add a 3D quad grid — shunz / detail
  23. Update cmake list for unit grid test — shunz / detail
  24. Fix typo in 3D quad sheet grid — shunz / detail
  25. fix bug in qauxv gradient calculation in 3D IBL cell integrand — shunz / detail
  26. Fix the scale and dimension of dissipation integral in 3D integral — shunz / detail
  27. fix a typo in thickness identity — shunz / detail
  28. Add more options to 3D IBL stagnation flow case, including quad grid, solution initialization, — shunz / detail
  29. one more bug fix in cell integrand for 3D IBL — shunz / detail
  30. Bugfix in calculation of trace unit normal vector for area cells in 3D — shunz / detail
  31. Add Nishida's crossflow closure.  Add pyrite check of stagnation flow case for 3D IBL.  Minor addition for debugging in PDEIBL3D — shunz / detail
  32. fix dependents of refactoring of GetSolnDofCell_IBL — shunz / detail
  33. Add a 3D flat plate source panel method but haven't tested yet — shunz / detail
  34. intermediate commit: minor clenaup and add guards. — shunz / detail
  35. intermediate commit: working on 3D coupled IBL for torpedo cass — shunz / detail
  36. add 3x3 equation system — shunz / detail
  37. typo fix. add partial instantiations for system 3x3 vector and matrix types — shunz / detail
  38. add linesearch data type for 3x3 equation system — shunz / detail
  39. add missing include — shunz / detail
  40. intermediate commit: fix many compiling errors in the way of running torpedo case for IBL3D. switching computer to continue the work... — shunz / detail
  41. refactor projection to Qauxi — shunz / detail
  42. add interior trace integrand for projection onto Qauxi — shunz / detail
  43. minor fix — shunz / detail
  44. add instantiations for IBL3D torpedo case — shunz / detail
  45. add instantiations for coupled IBL3D — shunz / detail
  46. remove unnecessary assert — shunz / detail
  47. fix for coupled IBL case to compile and run — shunz / detail
  48. fix uninitialized dummy DOFs — shunz / detail
  49. fix setDOFFrom in Qauxv 3D (missing q_y previously) — shunz / detail
  50. Coupled 3D IBL case converged on some simple variants of the torpedo case: linear and mildly nonlinear radial velocity distribution with attached laminar BLs — shunz / detail
  51. Tried triangle grid as well: fine on radially linear velocity distribution but couldn't converge on a more nonlinear case — shunz / detail
  52. cleaned up unused stuff — shunz / detail
  53. refactor SetIBLoutputCellGroup to accommodate both 3D and 2D IBL — shunz / detail
  54. remove outdated include — shunz / detail
  55. more refactoring of SetIBLoutputCellGroup for 3D IBL.  working progress.  switching computer — shunz / detail
  56. intermediate commit. switching computer. — shunz / detail
  57. enable tecplot output for 3D IBL — shunz / detail
  58. added PyDict options for Verbose and writeMarketMatrix for UMFPACK — allmaras / detail
  59. add full-state BC for IBL3D with corresponding boundary trace integrand.  verified on an uncoupled Blasius case — shunz / detail
  60. add a coupled IBL3D Blasius case — shunz / detail
  61. implement PTC for coupled IBL 3x3 system — shunz / detail
  62. add commented-out stuff for turning off laminar amplification and lag equations in IBL3D — shunz / detail
  63. fix typo in commented-out stuff — shunz / detail
  64. enable rotated mesh for IBL3D torpedo case — shunz / detail
  65. set up a torpedo with grid aligned with xy axes.  turned off laminar amplification and lag equations [need to be brought back after testing purely laminar BLs] — shunz / detail
  66. minor change to test case — shunz / detail
  67. minor refactoring on Blasius inflow BC params — shunz / detail
  68. rename test cases — shunz / detail
  69. speed up panel-related jacobian calculation using cached influence matrix in place of surrealized qauxifld — shunz / detail
  70. add jacobian timing for refactoring purpose — shunz / detail
  71. add similar (to DBL3) Falkner-Skan inflow bc for IBL3D with non-constant inflow state. set up a tornado case with rotated xy grid to compare with DBL3 — shunz / detail
  72. minor refactoring of test cases — shunz / detail
  73. remove trivial zero z velocity component to speed up panel method — shunz / detail
  74. minor refactoring — shunz / detail
  75. typo fix — shunz / detail
  76. precompute inviscid velocity for panel, which resulted in O(10) speedup in related residual calculation. fix DOF indexing in residual/jacobian precomputation — shunz / detail
  77. define macro to comment off some lines for timing/refactoring — shunz / detail
  78. minor comments — shunz / detail
  79. add ping test for coupled IBL in 3x3 block system — shunz / detail
  80. attempt to mirror tets in XField3D_Box_Tet_X1_WakeCut — allmaras / detail
  81. reverted to original prism-split coding; remainder of code is hard-coded for the — allmaras / detail
  82. fix typo in Cf2 closure, although it didn't change the torpedo case results much — shunz / detail
  83. Fix dot for VectorBlock — galbramc / detail
  84. added PyDict control of wake & Kutta Nitsche parameters — allmaras / detail
  85. Added test of sourceCoarse and sourceFine for RANSSA with artificial viscosity. — blsc / detail
  86. Added missing sourceCoarse and sourceFine functions from pressure gradient sensor and added unit test — blsc / detail
  87. added PyDict solve check option to UMFPACK; currently commented out actual check — allmaras / detail
  88. Fixes for checking the UMFPACK solve — galbramc / detail
  89. Missed adding PDEEulermitAVDiffusion2D.h to the commit. This file has specialized versions of sourceCoarse and sourceFine for a param that is a H-tensor and distance function. — blsc / detail
  90. add a wall term to dissipation relation of Nishida's closure, although it didn't affect things much — shunz / detail
  91. add a test case of fx67-k-170 airfoil — shunz / detail
  92. minor edit to output filenames at convergence failures — shunz / detail
  93. resolve merge conflict — shunz / detail
  94. changed default flux of IBL to LF flux — shunz / detail
  95. add a test case for drag polar — shunz / detail
  96. ran drag polar cases — shunz / detail
  97. refactored reference speed in transition model — shunz / detail
  98. typo fix — shunz / detail
  99. rename working directory — shunz / detail
  100. refator characteristic speed for PTC — shunz / detail
  101. refator characteristic speed for PTC — shunz / detail
  102. Add unit tests demonstrating that the step matrix calculation is stable to scaling — hcarson / detail
  103. update pyrite files — shunz / detail
  104. refactor 3D IBL closure API to allow for alternative closure models — shunz / detail
  105. save 3D closure relations in a separate header — shunz / detail
  106. add neural net closure for 3D IBL — shunz / detail
  107. run drag polar on finer grids — shunz / detail
  108. switch to run on acdl desktop — shunz / detail
  109. fix memory leak warning caused by accessing index -1 — shunz / detail
  110. minor update — shunz / detail
  111. mucking with PETSc for IBL3 — shunz / detail
  112. instantiate MKL_PARDISO solver for matrix block 3x3 — shunz / detail
  113. tried MKL_PARDISO solver for IBL3 — shunz / detail
  114. Adding test that Explicitly calculating the step from the metric directly is not unstable. Cases in 2D and 3D, showing stability to an AR of 2^10 in 3D, and 2^64 in 2D. — hcarson / detail
  115. minor typo fix — shunz / detail
  116. fix formatting — shunz / detail
  117. add mitLG BC for IBL3 — shunz / detail
  118. minor refactoring — shunz / detail
  119. switch to the same input parameters as DBL3 — shunz / detail
  120. add LF flux to IBL3 — shunz / detail
  121. Changes to ErrorModel to allow for the new exact nodal metric calculation — hcarson / detail
  122. Changes to ErrorModel to allow for the new exact nodal metric calculation — hcarson / detail
  123. pre merge add.... wth? — hcarson / detail
  124. add Dirichlet mitLG inflow BC to a Blasius flow test case — shunz / detail
  125. Jenkins fix — hcarson / detail
  126. reverting to the develop branch of ErrorModel — hcarson / detail
  127. fixes to case — hcarson / detail
  128. fixes to case — hcarson / detail
  129. intermediate commit: added 4-equation neural net closure model.  working on 4-equation IBL3D pde class — shunz / detail
  130. remove extraneous tamplate keyword — shunz / detail
  131. Various changes for arthur: Commented the adjoint_wo_p things from SolverInterface_VMSD_BR2, reducing the memory reqs. Made the Deltawing adapts more uniform and fit with the plan. Added the Solve case for the VMSD delta wing. — hcarson / detail
  132. added soruce terms for the lateral curvature equation of IBL3 — shunz / detail
  133. removed re-definition — shunz / detail
  134. refactored and added PDE and BC for four-equation 3D IBL class.  added a starting point for torpedo case — shunz / detail
  135. separated classes of 3D IBL and IBLFourEqn — shunz / detail
  136. generalized templates in IBL3-related integrands — shunz / detail
  137. added instantiations for four-equation 3D IBL — shunz / detail
  138. fixed instantiation typo — shunz / detail
  139. turned on verbose linesearch printout — shunz / detail
  140. added a visous-only Blasius case for 4-equation 3D IBL.  added a missing include — shunz / detail
  141. refactored reference coordinate gradient for speedup.  add/edit comments for clarity — shunz / detail
  142. typo fix: gradqe*E_qesq.  minor edits — shunz / detail
  143. turned off printout in unit testing — shunz / detail
  144. cosmetic changes — shunz / detail
  145. refactored neural net closure models: H22, Hd1, Hc2 — shunz / detail
  146. added output for four-equation 3D IBL — shunz / detail
  147. unit tests and associated modifications — ksabo / detail
  148. fixed auxi equation (wall transpiration): previous mass flux missed crossflow component — shunz / detail
  149. previous fix to wall transpiration (auxi equation) didn't fix.  it is now fixed.  added unit test — shunz / detail
  150. minor tweak — shunz / detail
  151. minor cleanup — shunz / detail
  152. add velocity gradient output to IBL — shunz / detail
  153. add instantiation — shunz / detail
  154. added IBL3 closure relations in the form of analytic formulae — shunz / detail
  155. tested something with git (still learning this thing) — ksabo / detail
  156. salt deposit #1 (updated files I accidentally erased...) — ksabo / detail
  157. refactored neural net closure implementation — shunz / detail
  158. recoded jacobianMasterState method, still need to test it — ksabo / detail
  159. added a set of IBL3 closure models based on analytic formulae — shunz / detail
  160. restored four-equation neural net closure to its original working state — shunz / detail
  161. switch to using 4-equation IBL3 closure based on analytic formulae.  results are similar or slightly better than neural net closure — shunz / detail
  162. fixed a typo (which fortunately wasn't used yet).  added exception throws — shunz / detail
  163. fixed include filename — shunz / detail
  164. removed redundant exceptions — shunz / detail
  165. Q1DConservative for TCNE is functionally completed (only needs aesthetic changes at this point) — ksabo / detail
  166. refactored four-eqn IBL3 curve-fit closure — shunz / detail
  167. conformed to vera check: should not use "using namespace" in header files — shunz / detail
  168. fixed unit tests for after API refactoring — shunz / detail
  169. fixed unit tests for the  previous API refactoring — shunz / detail
  170. fixed ping tests: finite difference step size — shunz / detail
  171. added ping test for four-eqn IBL3 — shunz / detail
  172. added Blasius flow test case for four-eqn IBL3D. some cleanup — shunz / detail
  173. added include — shunz / detail
  174. added includes — shunz / detail
  175. checked four-eqn IBL3D on Blasius case and stagnation radial flow — shunz / detail
  176. added a stagnation flow toy case.  mucked with IBL3 for torpedo case — shunz / detail
  177. fixed toy case to keep up with API refactoring — shunz / detail
  178. added missing include related to MPI — shunz / detail
  179. suppresed file dump in system test — shunz / detail
  180. added assertions — shunz / detail
  181. add some derivates to the IBL3 output — shunz / detail
  182. relaxed pyrite tolerance — shunz / detail
  183. relaxed pyrite tolerance for intel compiler.  speed up ping test to avoid time-out — shunz / detail
  184. renamed output — shunz / detail
  185. added and refactored IBL3 output — shunz / detail
  186. make verbose_ if-tests consistent throughout — allmaras / detail
  187. fixed screen dump for checkSolve_ when residuals above tolerance — allmaras / detail
  188. added option to dump solution at each Newton iteration — allmaras / detail
  189. added pressure gradient for space-time — allmaras / detail
  190. added instantiations, etc, needed for log(p) variables with look-up porosity/permeability tables — allmaras / detail
  191. added grid-Laplacian artificial viscosity for pressure; currently hard-coded diffusion coefficient — allmaras / detail
  192. trying to fix gnu9 compiler warning — shunz / detail
  193. added "#include <utilities>" for std::move; added unit test for VectorBlock_3 — allmaras / detail
  194. fixed vera line-length squawk — allmaras / detail
  195. fixed vera line-length squawk — allmaras / detail
  196. fixed vera line-length squawk — allmaras / detail
  197. add a new curve fit model based on low-dissipative DBL3 data — shunz / detail
  198. allow for uncoupled/viscou-only IBL3 solution by tweaking the panel method — shunz / detail
  199. fixed VectorBlock_3 unit test; made ::m() and ::n() static, so 2, 3, and 4 are all consistent — allmaras / detail
  200. forgot to save changes in the last commit... — shunz / detail
  201. relaxed Jenkins timeout threshold for some large ping tests — shunz / detail
  202. minor tweak — shunz / detail
  203. speed up ping test by turning off some redundant sub-block checks — shunz / detail
  204. fix cppcheck error — shunz / detail
  205. speed up ping test by turning off tests on some sub-blocks of the jacobian — shunz / detail
  206. added directory creation for output files — allmaras / detail
  207. Don't use python2 with jenkins — galbramc / detail
  208. removed old version of adjoint-compatible potential solver for Hershey wing — allmaras / detail
  209. temporarily disabled tests involving artificial viscosity fluxes if USE_PRESSURE_AV defined — allmaras / detail
  210. make VectorBlock test-suite names unique (so make unit_build works) — allmaras / detail
  211. added unit tests for circulation integrations — allmaras / detail
  212. added circulation integrations for lift & roll as functional outputs — allmaras / detail
  213. Add Q3 and Q4 elements to Gmsh IO — galbramc / detail
  214. clean-up of circulation-base functional code/test; added drag but #ifdef'ed out, as it's not complete — allmaras / detail
  215. intermediate commit: working on hooking up PETSc for block algebraic equation system — shunz / detail
  216. Fix finding macOS Accelerate BLAS — galbramc / detail
  217. cppcheck fixes for nightly — allmaras / detail
  218. moving back to develop — hcarson / detail
  219. add empty definition to fix undefined reference in weekly test — shunz / detail
  220. add empty definition to fix undefined reference in weekly test — shunz / detail
  221. add empty definition to fix undefined reference in weekly test — shunz / detail
  222. vera fix — hcarson / detail
  223. added a new set of closure relations based on low-dissipation DBL3 data — shunz / detail
  224. updated RthCf1 correlation coefficient — shunz / detail
  225. fixed call to undefined function — shunz / detail
  226. removing unneeded test — hcarson / detail
  227. minor updates to TCNE stuff (getting back into it) — ksabo / detail
  228. added mitLG BC for four equation IBL3D — shunz / detail
  229. fixing unused var — hcarson / detail
  230. Update for latest version of refine — galbramc / detail
  231. missing space — hcarson / detail
  232. Added vpr11@mit.edu to DeveloperEmailAddresses — vpr11 / detail
  233. End of week dump. — ksabo / detail
  234. added pressure jump into source for AV sensor in two-phase porous media — allmaras / detail
  235. minor changes to SPE10 test case: added #ifdef's for log(pn), table lookup; changed — allmaras / detail
  236. added #define label for pressure jump in AV sensor source; updated unit test — allmaras / detail
  237. added new closure option (but commented off for now). updated system test case for four-eqn IBL3D on stagnation flow BL — shunz / detail
  238. zero guard for smoothabs0 — allmaras / detail
  239. updated unit tests to incorporate pressure jumps in sensor source for two-phase AV — allmaras / detail
  240. Use 2 MPI processors on macOS with Jenkins. Make TetGen optional again. — galbramc / detail
  241. Fix for finding boost — galbramc / detail
  242. Some chemsitry model unit tests - need before source term testing. — ksabo / detail
  243. Fix for 2 MPI procs on macOS — galbramc / detail
  244. Various CMake fixes — galbramc / detail
  245. Fix BuildBoost — galbramc / detail
  246. vibrational relaxation time unit tests — ksabo / detail
  247. LIP solver can consume CAPS mesh — galbramc / detail
  248. Update minimum ESP version to 1.18 — galbramc / detail
  249. Relax EGADS version requirement — galbramc / detail
  250. Fix link error — galbramc / detail
  251. Missed a file — galbramc / detail
  252. More link error fixes — galbramc / detail
  253. More link fixes — galbramc / detail
  254. Exlicit Exception instantiations. Bias for Python 3 with CMake — galbramc / detail
  255. added continuousGlobalMap() for block 2x2 AES — shunz / detail
  256. PETSc now works for coupled IBL3 block AES 3x3 — shunz / detail
  257. minor refactoring — shunz / detail
  258. cleaned up and merged sandbox cases — shunz / detail
  259. use reference velocity scale consistently — shunz / detail
  260. turned on quasi-2D closure relations for 3-eq 3D IBL — shunz / detail
  261. Missed one instantiation. More optional TetGen fixes — galbramc / detail
  262. Various small fixes — galbramc / detail
  263. added exceptions for petsc MPI implementations for block AES 3x3 — shunz / detail
  264. turned off 3D IBL transition and lag equations for system test (for now) — shunz / detail
  265. turned off some TBD MPI stuff in petsc block AES 3x3 to avoid compiling errors — shunz / detail
  266. fixed unused variable warnings — shunz / detail
  267. fix compiling error in sandbox case — shunz / detail
  268. Added quasi-2D turbulent closure to four-eqn IBL3 formulation — shunz / detail
  269. fixed deprecated macro — shunz / detail
  270. First set of updates from cleaning up develop branch. Contains code and tests related to adding a spatially varying a-field (i.e. from previous adapt soln) in Homotopy — blsc / detail
  271. Removed sourceCoarse and sourceFine in lieu of sourceTraceJump — galbramc / detail
  272. Move Surreal into SANS namespace — galbramc / detail
  273. Forgot a file — galbramc / detail
  274. Missed MPI SurrealS — galbramc / detail
  275. Add missing include — galbramc / detail
  276. Remove SurrealS(Real,Real) constructor — galbramc / detail
  277. More fixes for modified Surreal — galbramc / detail
  278. Fix warnings — galbramc / detail
  279. Setup to run VMSDBR2 on fixed Joukowski meshes — galbramc / detail
  280. Fix uninitialized variable warnings — galbramc / detail
  281. Fix vera warning — galbramc / detail
  282. src/LinearAlgebra/ — blsc / detail
  283. First pass at prototyping a globally constrained algebraic equation set — blsc / detail
  284. Updates to globally constrained equations to include condensation of matrix in PETSc — blsc / detail
  285. Updates for first round of parallelizing the homotopy — blsc / detail
  286. Parallel homotopy appears to be working — blsc / detail
  287. EGADS interface refactoring. Added meanline blade. — galbramc / detail
  288. Fixes for EGTess — galbramc / detail
  289. More fixes to the EGADS cleanup — galbramc / detail
  290. More EGADS fixes — galbramc / detail
  291. Fix compile error — galbramc / detail
  292. Fix warning — galbramc / detail
  293. Fix more warnings — galbramc / detail
  294. A few tweeks on the homotopy and 3D set up — blsc / detail
  295. Updated interface for globally constrained equations so the jacobian for the pde and the constraints are in seperate functions — blsc / detail
  296. The small problem for static condensation is calculated on one processor then broadcast, that way there are on finite precision inconsistencies — blsc / detail
  297. Added template parameter to determine if (PETSc) should do a shur complement from block 2x2. Note, if we're not using PETSc, then the block matrix is solved as is. This is because the shur complement is only a work around for parallel communication issues. — blsc / detail
  298. ... because if you hard code tecplot for 4 levels of grid refinement on output you get a 300Gb tecplot file in 3D ... — blsc / detail
  299. Refactor CubicCamber. Add Normal vector field. — galbramc / detail
  300. Forgot files — galbramc / detail
  301. Add missing includes — galbramc / detail
  302. Number of global constraints is now a runtime option. The global coupling uses a CRS matrix structure, as opposed to MatrixD, since the CRS structure is already there. — blsc / detail
  303. Fixed bug with small system decomposition. The matrix was incorrectly sized for runtime constraints — blsc / detail
  304. Fix field normal vector check for parallel — galbramc / detail
  305. Resolved issues that came up due to merging — blsc / detail
  306. First pass at prototyping a globally constrained algebraic equation set — blsc / detail
  307. Updates to globally constrained equations to include condensation of matrix in PETSc — blsc / detail
  308. Updates for first round of parallelizing the homotopy — blsc / detail
  309. Parallel homotopy appears to be working — blsc / detail
  310. A few tweeks on the homotopy and 3D set up — blsc / detail
  311. Updated interface for globally constrained equations so the jacobian for the pde and the constraints are in seperate functions — blsc / detail
  312. The small problem for static condensation is calculated on one processor then broadcast, that way there are on finite precision inconsistencies — blsc / detail
  313. Added template parameter to determine if (PETSc) should do a shur complement from block 2x2. Note, if we're not using PETSc, then the block matrix is solved as is. This is because the shur complement is only a work around for parallel communication issues. — blsc / detail
  314. ... because if you hard code tecplot for 4 levels of grid refinement on output you get a 300Gb tecplot file in 3D ... — blsc / detail
  315. Number of global constraints is now a runtime option. The global coupling uses a CRS matrix structure, as opposed to MatrixD, since the CRS structure is already there. — blsc / detail
  316. Fixed bug with small system decomposition. The matrix was incorrectly sized for runtime constraints — blsc / detail
  317. Clean up after merging from develop — blsc / detail
  318. More merging issues — blsc / detail
  319. Added RotorSource for Euler equations — galbramc / detail
  320. Various small fixes — galbramc / detail
  321. Fix compile error — galbramc / detail
  322. A few more fixes — galbramc / detail
  323. Fix unit test error — galbramc / detail
  324. Bulk of unit tests done. — ksabo / detail
  325. Update refine libraries — galbramc / detail
  326. src/ — blsc / detail
  327. Missing unit tests and ability to daisy chain globally constrained algebraic equation sets — blsc / detail
  328. Missed an update for the serial version of PETSc — blsc / detail
  329. Further speed improvements — galbramc / detail
  330. Fix VMSDBR2 adjoint bug. Update refine build. — galbramc / detail
  331. Some fixes for the Rotor source — galbramc / detail
  332. Trying DG Normal vector field — galbramc / detail
  333. Correction to Rotor source — galbramc / detail
  334. One more fix to Rotor source — galbramc / detail
  335. One more fix — galbramc / detail
  336. updated file names — ksabo / detail
  337. updated file names (round 2) — ksabo / detail
  338. Fixed warnings and other minor things — ksabo / detail
  339. 150 char line error fix — ksabo / detail
  340. used brackets for matrix call, fixed now — ksabo / detail
  341. Some cleanup of PETSc Shur solve — galbramc / detail
  342. Fixes for MKL with Block 2x2 — galbramc / detail
  343. Bug fixes for homotopy and some 3D bugs — blsc / detail
  344. Fixed a few bug (undefined param and timeout) — blsc / detail
  345. fixed stack-buffer-overflow error in temperature data structures — ksabo / detail
  346. Missing instantiations, BC that only existed for local testing purposes removed. — blsc / detail
  347. fixed read access error from electron indexing bug — ksabo / detail
  348. fixed compiler warnings — ksabo / detail
  349. dropped tol to 1e-11 from 1e-12, removed extra {} that may have been causing an issue — ksabo / detail
  350. renamed test suite (explicitly added TCNE to name) - was causing conflict error — ksabo / detail
  351. SANS_Nightly fix, efma line compiler warning deleted — ksabo / detail
  352. updated reverse reaction rate temperature calculations — ksabo / detail
  353. Add trace quadrature checking to isValidCell_VMSD. — hcarson / detail
  354. Refactored global constraintes — galbramc / detail
  355. Forgot files — galbramc / detail
  356. Compile fixes — galbramc / detail
  357. Fix unit test — galbramc / detail
  358. Added a new ParamFieldBuilder specialization for (log-permeability, porosity, gen-H) param fields. Added a unit test. — savithru / detail
  359. added pde/IncompressibleNS — allmaras / detail
  360. added 1D incompressible NS for fully developed channel flow with sansLG Robin BCs — allmaras / detail
  361. added 2nd weighting parameter to weightBC; 1st parameter is for Dirichlet / adjoint state, — allmaras / detail
  362. added 2nd weighting parameter to weightBC; missed one file — allmaras / detail
  363. added Robin_sansLG BC catagory — allmaras / detail
  364. IO file check flag -> true — allmaras / detail
  365. 1D incompressible NS solver for fully developed channel flow — allmaras / detail
  366. bug fixes — allmaras / detail
  367. Major refactor of the two-phase PDE classes to support a (log-permeability, porosity) param-field. The artificial viscosity classes use a (log-permeability, porosity, log-H) param-field. — savithru / detail
  368. Updated ErrorEstimate_DGBR2 instantiations — savithru / detail
  369. Updated tests. All unit and system tests compile now. — savithru / detail
  370. added test for -Identity() initializer — allmaras / detail
  371. Fix so -DLA::Identity() works properly — galbramc / detail
  372. added BCs for 1D RANS-SA for channel flow — allmaras / detail
  373. unit tests for 1D RANS-SA for channel flow — allmaras / detail
  374. unit tests: missed one — allmaras / detail
  375. unit test output pattern test files — allmaras / detail
  376. 1D RANS-SA test case for fully developed channel flow -- preliminary — allmaras / detail
  377. updated test case — allmaras / detail
  378. More refactoring to get sandbox cases to compile. — savithru / detail
  379. Fixed a unit test. — savithru / detail
  380. Missed a sandbox case. — savithru / detail
  381. Reverting include path for boost output_test_stream — savithru / detail
  382. made algebraic eqn-set files more consistent between Galerkin and Galerkin_Stabilized — allmaras / detail
  383. instantiated VectorS<2> output — allmaras / detail
  384. Updated discretizations and PDE interfaces to use both paramL and paramR when evaluating fluxAdvectiveUpwind or fluxAdvectiveUpwindSpaceTime. This is important for the two-phase flow PDE, where the temporal flux depends on the porosity param-field value (which can be heterogeneous). — savithru / detail
  385. Update 2D ugrid reader for UNFORATTED (.r8.ugrid) files. — galbramc / detail
  386. Fix warning — galbramc / detail
  387. Fix warning — galbramc / detail
  388. added Robin BC dot product tests; currently commented out, since they fail to compile — allmaras / detail
  389. added Tensor-Vector dot-products: e.g. dot( VectorX, TensorMatrixQ ) — allmaras / detail
  390. clean up: MatrixS<D,D,MatrixQ> -> TensorMatrixQ — allmaras / detail
  391. needed additional #include's — allmaras / detail
  392. added ND ctor for BCs: BC( PDE, BCArgs ) — allmaras / detail
  393. added dist parameters to certain functions; added jacobianMasterState; code clean-up — allmaras / detail
  394. added skin friction / drag output for 1D incompressible NS channel flow — allmaras / detail
  395. added #if's to try different combinations of '(gradphi . K . nHat) betaBC^t rsdBC'; — allmaras / detail
  396. Updated FV-TPFA discretization to work for heterogeneous properties + some cleanup. — savithru / detail
  397. Added missing includes — savithru / detail
  398. removed dot-products supporting (K . nHat) operator in Robin_sansLG BCs, and reverted — allmaras / detail
  399. added IncompressibleNSLib to unit test builders — allmaras / detail
  400. latest sandbox tests for 1D fully developed channel flow — allmaras / detail
  401. Updated global contraints. Solve rotor speed at specified power. — galbramc / detail
  402. Compile fixes — galbramc / detail
  403. Add missing files — galbramc / detail
  404. added optional parameter to output_gnuplot for number of points per element (default remains 11) — allmaras / detail
  405. code cleanup for 1D NS/RANS — allmaras / detail
  406. solution function for 1D RANS: analytic law-of-the-wall for SA — allmaras / detail
  407. missed a pattern file — allmaras / detail
  408. missed a unit test file — allmaras / detail
  409. updated 1D RANS fully developed channel flow case to (a) work, (b) output useful data, — allmaras / detail
  410. Fix all output functionals to properly work in parallel — galbramc / detail
  411. name change for test suite to avoid link conflict for 'make unit' — allmaras / detail
  412. Fix compile error — galbramc / detail
  413. Compile fix — galbramc / detail
  414. Missing include — galbramc / detail
  415. More missing includes — galbramc / detail
  416. More missing includes — galbramc / detail
  417. reverted to depricated include directory for <boost/test/unit_test.hpp> — allmaras / detail
  418. More missing include fixes — galbramc / detail
  419. Upgrade to AFLR 10.8.7 — galbramc / detail
  420. Update AFLR libraries — galbramc / detail
  421. src/ — blsc / detail
  422. Updated BC::isValidState interface so mitState BCs can check if the boundary state generated is also valid — blsc / detail
  423. Removed file that didn't work out and shouldn't have been commited — blsc / detail
  424. Fix AFLR library order — galbramc / detail
  425. Formatting fixes — blsc / detail
  426. Missing instantiation and arguments flipped causing a unit test to fail — blsc / detail
  427. Fixes for AFLR4 and EGADS updates — galbramc / detail
  428. Fix for wake sheets — galbramc / detail
  429. Various small fixes — galbramc / detail
  430. Allow specified interior traces — galbramc / detail
  431. Compile fixes. Allow UnionJack to work in parallel — galbramc / detail
  432. Fix compile error — galbramc / detail
  433. removed 1D incompressible NS channel flow test case -- won't compile due to double — allmaras / detail
  434. Fixes for parallel specified interior traces. Added ParkMMS and EntropyProduction output. — galbramc / detail
  435. Forgot files — galbramc / detail
  436. Fixes for parallel interior traces — galbramc / detail
  437. Fix uninitialized data — galbramc / detail
  438. Fix intel warning — galbramc / detail
  439. Added new SPE10 cases for time-marching FV and DGBR2+AV. — savithru / detail
  440. Fix parallel DG DOF indexing for multiple cell groups — galbramc / detail
  441. fixes for jenkins squawks — allmaras / detail
  442. Fix EG zombies — galbramc / detail
  443. missing #include <vector> — allmaras / detail
  444. fixed warning for un-used typedef — allmaras / detail
  445. added isValidState with (x,time,nx,q) params for Dirichlet — allmaras / detail
  446. Hardening ReadSolution_PX to throw uniformly across MPI if rank 0 fails to load the file. Can now use try catch around restart blocks! — hcarson / detail
  447. fixed uninitialized variables in test — allmaras / detail
  448. removed redundant instantiation — allmaras / detail
  449. removed unneeded print statements and a typo — hcarson / detail
  450. Nightly fixes — galbramc / detail
  451. Various small fixes — galbramc / detail
  452. Fix to erroneous logic — hcarson / detail
  453. Make safe_at work for any container type, and reduce code duplication — hcarson / detail
  454. Nightly fixes — galbramc / detail
  455. More nightly fixes — galbramc / detail
  456. fixed nightly warning on unused variable — allmaras / detail
  457. Relax execution time — galbramc / detail
  458. Changed isValid to check: qbar + qp at cell quads, and qbar, qbar + qpL and qbar + qpR for interior traces. These are the only values used in flux evaluation — hcarson / detail
  459. Fix accross spelling. Fix AFLR3 to distribute in parallel. Update interior trace parallel construction. — galbramc / detail
  460. Reduce maximum grid size for PDESourceOnly_Projection_btest — galbramc / detail
  461. Add latest PETSc version — galbramc / detail
  462. Nightly fix — galbramc / detail
  463. Various CMake fixes — galbramc / detail
  464. Fix for building Tetgen — galbramc / detail
  465. Don't ues intel compiler to compile TetGen — galbramc / detail
  466. Nightly fix — galbramc / detail
  467. Relax tolerance for nightly test — galbramc / detail
  468. Update refine, TetGen, and AFLR. Added ParameterDictList for a list of dictionaries. Rename MeanlineBlade to CamberBlade. — galbramc / detail
  469. Correct AFLR version — galbramc / detail
  470. Forgot tetgen patch — galbramc / detail
  471. Various fixes — galbramc / detail
  472. Fix library order — galbramc / detail
  473. Relax ping tolerance — galbramc / detail
  474. Comment out file dump — galbramc / detail
  475. Nightly fixes — galbramc / detail
  476. Add python UI for body force calculations. — galbramc / detail
  477. Fix compile errors — galbramc / detail
  478. Fix warning — galbramc / detail
  479. Various compile fixes — galbramc / detail
  480. Some small fixes — galbramc / detail
  481. Fix interior trace partitioning — galbramc / detail

#267 (Oct 3, 2020, 9:17:42 AM)

  1. First pass at structuring TCNE pde, a little messy — blsc / detail
  2. TCNE stuff — ksabo / detail
  3. relocate QauxvInterpret forward declaration in prep for 3D stuff — shunz / detail
  4. Added basic stuff for 3D IBL — shunz / detail
  5. Minor cleanup — shunz / detail
  6. Initial pass on PDEIBL3D — shunz / detail
  7. Filled in 3D IBL closure with fully 3D components set to zero — shunz / detail
  8. Added BCNone for IBL3D — shunz / detail
  9. added a working version of sandbox case for IBL3D — shunz / detail
  10. Added a sheet grid of triangles in 3D for IBL3D — shunz / detail
  11. Added instantiation — shunz / detail
  12. Intermediate commit — shunz / detail
  13. Working on integrands for first 3D IBL case — shunz / detail
  14. More fixes to integrand classes for IBL3D — shunz / detail
  15. Fixed instantiations for IBL3D — shunz / detail
  16. Add explicit instantiations and fix typos in closure class — shunz / detail
  17. Initial version of local Cartesian basis construction for 3D IBL — shunz / detail
  18. Minor cleanup — shunz / detail
  19. Fix constuction of q1 and q2 vectors in case of stagnation flows — shunz / detail
  20. Add velocity gradient calculation in cell integrand of 3D IBL — shunz / detail
  21. Refactor and add a 2D stagnation flow test case — shunz / detail
  22. Add a 3D quad grid — shunz / detail
  23. Update cmake list for unit grid test — shunz / detail
  24. Fix typo in 3D quad sheet grid — shunz / detail
  25. fix bug in qauxv gradient calculation in 3D IBL cell integrand — shunz / detail
  26. Fix the scale and dimension of dissipation integral in 3D integral — shunz / detail
  27. fix a typo in thickness identity — shunz / detail
  28. Add more options to 3D IBL stagnation flow case, including quad grid, solution initialization, — shunz / detail
  29. one more bug fix in cell integrand for 3D IBL — shunz / detail
  30. Bugfix in calculation of trace unit normal vector for area cells in 3D — shunz / detail
  31. Add Nishida's crossflow closure.  Add pyrite check of stagnation flow case for 3D IBL.  Minor addition for debugging in PDEIBL3D — shunz / detail
  32. fix dependents of refactoring of GetSolnDofCell_IBL — shunz / detail
  33. Add a 3D flat plate source panel method but haven't tested yet — shunz / detail
  34. intermediate commit: minor clenaup and add guards. — shunz / detail
  35. intermediate commit: working on 3D coupled IBL for torpedo cass — shunz / detail
  36. add 3x3 equation system — shunz / detail
  37. typo fix. add partial instantiations for system 3x3 vector and matrix types — shunz / detail
  38. add linesearch data type for 3x3 equation system — shunz / detail
  39. add missing include — shunz / detail
  40. intermediate commit: fix many compiling errors in the way of running torpedo case for IBL3D. switching computer to continue the work... — shunz / detail
  41. refactor projection to Qauxi — shunz / detail
  42. add interior trace integrand for projection onto Qauxi — shunz / detail
  43. minor fix — shunz / detail
  44. add instantiations for IBL3D torpedo case — shunz / detail
  45. add instantiations for coupled IBL3D — shunz / detail
  46. remove unnecessary assert — shunz / detail
  47. fix for coupled IBL case to compile and run — shunz / detail
  48. fix uninitialized dummy DOFs — shunz / detail
  49. fix setDOFFrom in Qauxv 3D (missing q_y previously) — shunz / detail
  50. Coupled 3D IBL case converged on some simple variants of the torpedo case: linear and mildly nonlinear radial velocity distribution with attached laminar BLs — shunz / detail
  51. Tried triangle grid as well: fine on radially linear velocity distribution but couldn't converge on a more nonlinear case — shunz / detail
  52. cleaned up unused stuff — shunz / detail
  53. refactor SetIBLoutputCellGroup to accommodate both 3D and 2D IBL — shunz / detail
  54. remove outdated include — shunz / detail
  55. more refactoring of SetIBLoutputCellGroup for 3D IBL.  working progress.  switching computer — shunz / detail
  56. intermediate commit. switching computer. — shunz / detail
  57. enable tecplot output for 3D IBL — shunz / detail
  58. added PyDict options for Verbose and writeMarketMatrix for UMFPACK — allmaras / detail
  59. add full-state BC for IBL3D with corresponding boundary trace integrand.  verified on an uncoupled Blasius case — shunz / detail
  60. add a coupled IBL3D Blasius case — shunz / detail
  61. implement PTC for coupled IBL 3x3 system — shunz / detail
  62. add commented-out stuff for turning off laminar amplification and lag equations in IBL3D — shunz / detail
  63. fix typo in commented-out stuff — shunz / detail
  64. enable rotated mesh for IBL3D torpedo case — shunz / detail
  65. set up a torpedo with grid aligned with xy axes.  turned off laminar amplification and lag equations [need to be brought back after testing purely laminar BLs] — shunz / detail
  66. minor change to test case — shunz / detail
  67. minor refactoring on Blasius inflow BC params — shunz / detail
  68. rename test cases — shunz / detail
  69. speed up panel-related jacobian calculation using cached influence matrix in place of surrealized qauxifld — shunz / detail
  70. add jacobian timing for refactoring purpose — shunz / detail
  71. add similar (to DBL3) Falkner-Skan inflow bc for IBL3D with non-constant inflow state. set up a tornado case with rotated xy grid to compare with DBL3 — shunz / detail
  72. minor refactoring of test cases — shunz / detail
  73. remove trivial zero z velocity component to speed up panel method — shunz / detail
  74. minor refactoring — shunz / detail
  75. typo fix — shunz / detail
  76. precompute inviscid velocity for panel, which resulted in O(10) speedup in related residual calculation. fix DOF indexing in residual/jacobian precomputation — shunz / detail
  77. define macro to comment off some lines for timing/refactoring — shunz / detail
  78. minor comments — shunz / detail
  79. add ping test for coupled IBL in 3x3 block system — shunz / detail
  80. attempt to mirror tets in XField3D_Box_Tet_X1_WakeCut — allmaras / detail
  81. reverted to original prism-split coding; remainder of code is hard-coded for the — allmaras / detail
  82. fix typo in Cf2 closure, although it didn't change the torpedo case results much — shunz / detail
  83. Fix dot for VectorBlock — galbramc / detail
  84. added PyDict control of wake & Kutta Nitsche parameters — allmaras / detail
  85. Added test of sourceCoarse and sourceFine for RANSSA with artificial viscosity. — blsc / detail
  86. Added missing sourceCoarse and sourceFine functions from pressure gradient sensor and added unit test — blsc / detail
  87. added PyDict solve check option to UMFPACK; currently commented out actual check — allmaras / detail
  88. Fixes for checking the UMFPACK solve — galbramc / detail
  89. Missed adding PDEEulermitAVDiffusion2D.h to the commit. This file has specialized versions of sourceCoarse and sourceFine for a param that is a H-tensor and distance function. — blsc / detail
  90. add a wall term to dissipation relation of Nishida's closure, although it didn't affect things much — shunz / detail
  91. add a test case of fx67-k-170 airfoil — shunz / detail
  92. minor edit to output filenames at convergence failures — shunz / detail
  93. resolve merge conflict — shunz / detail
  94. changed default flux of IBL to LF flux — shunz / detail
  95. add a test case for drag polar — shunz / detail
  96. ran drag polar cases — shunz / detail
  97. refactored reference speed in transition model — shunz / detail
  98. typo fix — shunz / detail
  99. rename working directory — shunz / detail
  100. refator characteristic speed for PTC — shunz / detail
  101. refator characteristic speed for PTC — shunz / detail
  102. Add unit tests demonstrating that the step matrix calculation is stable to scaling — hcarson / detail
  103. update pyrite files — shunz / detail
  104. refactor 3D IBL closure API to allow for alternative closure models — shunz / detail
  105. save 3D closure relations in a separate header — shunz / detail
  106. add neural net closure for 3D IBL — shunz / detail
  107. run drag polar on finer grids — shunz / detail
  108. switch to run on acdl desktop — shunz / detail
  109. fix memory leak warning caused by accessing index -1 — shunz / detail
  110. minor update — shunz / detail
  111. mucking with PETSc for IBL3 — shunz / detail
  112. instantiate MKL_PARDISO solver for matrix block 3x3 — shunz / detail
  113. tried MKL_PARDISO solver for IBL3 — shunz / detail
  114. Adding test that Explicitly calculating the step from the metric directly is not unstable. Cases in 2D and 3D, showing stability to an AR of 2^10 in 3D, and 2^64 in 2D. — hcarson / detail
  115. minor typo fix — shunz / detail
  116. fix formatting — shunz / detail
  117. add mitLG BC for IBL3 — shunz / detail
  118. minor refactoring — shunz / detail
  119. switch to the same input parameters as DBL3 — shunz / detail
  120. add LF flux to IBL3 — shunz / detail
  121. Changes to ErrorModel to allow for the new exact nodal metric calculation — hcarson / detail
  122. Changes to ErrorModel to allow for the new exact nodal metric calculation — hcarson / detail
  123. pre merge add.... wth? — hcarson / detail
  124. add Dirichlet mitLG inflow BC to a Blasius flow test case — shunz / detail
  125. Jenkins fix — hcarson / detail
  126. reverting to the develop branch of ErrorModel — hcarson / detail
  127. fixes to case — hcarson / detail
  128. fixes to case — hcarson / detail
  129. intermediate commit: added 4-equation neural net closure model.  working on 4-equation IBL3D pde class — shunz / detail
  130. remove extraneous tamplate keyword — shunz / detail
  131. Various changes for arthur: Commented the adjoint_wo_p things from SolverInterface_VMSD_BR2, reducing the memory reqs. Made the Deltawing adapts more uniform and fit with the plan. Added the Solve case for the VMSD delta wing. — hcarson / detail
  132. added soruce terms for the lateral curvature equation of IBL3 — shunz / detail
  133. removed re-definition — shunz / detail
  134. refactored and added PDE and BC for four-equation 3D IBL class.  added a starting point for torpedo case — shunz / detail
  135. separated classes of 3D IBL and IBLFourEqn — shunz / detail
  136. generalized templates in IBL3-related integrands — shunz / detail
  137. added instantiations for four-equation 3D IBL — shunz / detail
  138. fixed instantiation typo — shunz / detail
  139. turned on verbose linesearch printout — shunz / detail
  140. added a visous-only Blasius case for 4-equation 3D IBL.  added a missing include — shunz / detail
  141. refactored reference coordinate gradient for speedup.  add/edit comments for clarity — shunz / detail
  142. typo fix: gradqe*E_qesq.  minor edits — shunz / detail
  143. turned off printout in unit testing — shunz / detail
  144. cosmetic changes — shunz / detail
  145. refactored neural net closure models: H22, Hd1, Hc2 — shunz / detail
  146. added output for four-equation 3D IBL — shunz / detail
  147. unit tests and associated modifications — ksabo / detail
  148. fixed auxi equation (wall transpiration): previous mass flux missed crossflow component — shunz / detail
  149. previous fix to wall transpiration (auxi equation) didn't fix.  it is now fixed.  added unit test — shunz / detail
  150. minor tweak — shunz / detail
  151. minor cleanup — shunz / detail
  152. add velocity gradient output to IBL — shunz / detail
  153. add instantiation — shunz / detail
  154. added IBL3 closure relations in the form of analytic formulae — shunz / detail
  155. tested something with git (still learning this thing) — ksabo / detail
  156. salt deposit #1 (updated files I accidentally erased...) — ksabo / detail
  157. refactored neural net closure implementation — shunz / detail
  158. recoded jacobianMasterState method, still need to test it — ksabo / detail
  159. added a set of IBL3 closure models based on analytic formulae — shunz / detail
  160. restored four-equation neural net closure to its original working state — shunz / detail
  161. switch to using 4-equation IBL3 closure based on analytic formulae.  results are similar or slightly better than neural net closure — shunz / detail
  162. fixed a typo (which fortunately wasn't used yet).  added exception throws — shunz / detail
  163. fixed include filename — shunz / detail
  164. removed redundant exceptions — shunz / detail
  165. Q1DConservative for TCNE is functionally completed (only needs aesthetic changes at this point) — ksabo / detail
  166. refactored four-eqn IBL3 curve-fit closure — shunz / detail
  167. conformed to vera check: should not use "using namespace" in header files — shunz / detail
  168. fixed unit tests for after API refactoring — shunz / detail
  169. fixed unit tests for the  previous API refactoring — shunz / detail
  170. fixed ping tests: finite difference step size — shunz / detail
  171. added ping test for four-eqn IBL3 — shunz / detail
  172. added Blasius flow test case for four-eqn IBL3D. some cleanup — shunz / detail
  173. added include — shunz / detail
  174. added includes — shunz / detail
  175. checked four-eqn IBL3D on Blasius case and stagnation radial flow — shunz / detail
  176. added a stagnation flow toy case.  mucked with IBL3 for torpedo case — shunz / detail
  177. fixed toy case to keep up with API refactoring — shunz / detail
  178. added missing include related to MPI — shunz / detail
  179. suppresed file dump in system test — shunz / detail
  180. added assertions — shunz / detail
  181. add some derivates to the IBL3 output — shunz / detail
  182. relaxed pyrite tolerance — shunz / detail
  183. relaxed pyrite tolerance for intel compiler.  speed up ping test to avoid time-out — shunz / detail
  184. renamed output — shunz / detail
  185. added and refactored IBL3 output — shunz / detail
  186. make verbose_ if-tests consistent throughout — allmaras / detail
  187. fixed screen dump for checkSolve_ when residuals above tolerance — allmaras / detail
  188. added option to dump solution at each Newton iteration — allmaras / detail
  189. added pressure gradient for space-time — allmaras / detail
  190. added instantiations, etc, needed for log(p) variables with look-up porosity/permeability tables — allmaras / detail
  191. added grid-Laplacian artificial viscosity for pressure; currently hard-coded diffusion coefficient — allmaras / detail
  192. trying to fix gnu9 compiler warning — shunz / detail
  193. added "#include <utilities>" for std::move; added unit test for VectorBlock_3 — allmaras / detail
  194. fixed vera line-length squawk — allmaras / detail
  195. fixed vera line-length squawk — allmaras / detail
  196. fixed vera line-length squawk — allmaras / detail
  197. add a new curve fit model based on low-dissipative DBL3 data — shunz / detail
  198. allow for uncoupled/viscou-only IBL3 solution by tweaking the panel method — shunz / detail
  199. fixed VectorBlock_3 unit test; made ::m() and ::n() static, so 2, 3, and 4 are all consistent — allmaras / detail
  200. forgot to save changes in the last commit... — shunz / detail
  201. relaxed Jenkins timeout threshold for some large ping tests — shunz / detail
  202. minor tweak — shunz / detail
  203. speed up ping test by turning off some redundant sub-block checks — shunz / detail
  204. fix cppcheck error — shunz / detail
  205. speed up ping test by turning off tests on some sub-blocks of the jacobian — shunz / detail
  206. added directory creation for output files — allmaras / detail
  207. Don't use python2 with jenkins — galbramc / detail
  208. removed old version of adjoint-compatible potential solver for Hershey wing — allmaras / detail
  209. temporarily disabled tests involving artificial viscosity fluxes if USE_PRESSURE_AV defined — allmaras / detail
  210. make VectorBlock test-suite names unique (so make unit_build works) — allmaras / detail
  211. added unit tests for circulation integrations — allmaras / detail
  212. added circulation integrations for lift & roll as functional outputs — allmaras / detail
  213. Add Q3 and Q4 elements to Gmsh IO — galbramc / detail
  214. clean-up of circulation-base functional code/test; added drag but #ifdef'ed out, as it's not complete — allmaras / detail
  215. intermediate commit: working on hooking up PETSc for block algebraic equation system — shunz / detail
  216. Fix finding macOS Accelerate BLAS — galbramc / detail
  217. cppcheck fixes for nightly — allmaras / detail
  218. moving back to develop — hcarson / detail
  219. add empty definition to fix undefined reference in weekly test — shunz / detail
  220. add empty definition to fix undefined reference in weekly test — shunz / detail
  221. add empty definition to fix undefined reference in weekly test — shunz / detail
  222. vera fix — hcarson / detail
  223. added a new set of closure relations based on low-dissipation DBL3 data — shunz / detail
  224. updated RthCf1 correlation coefficient — shunz / detail
  225. fixed call to undefined function — shunz / detail
  226. removing unneeded test — hcarson / detail
  227. minor updates to TCNE stuff (getting back into it) — ksabo / detail
  228. added mitLG BC for four equation IBL3D — shunz / detail
  229. fixing unused var — hcarson / detail
  230. Update for latest version of refine — galbramc / detail
  231. missing space — hcarson / detail
  232. Added vpr11@mit.edu to DeveloperEmailAddresses — vpr11 / detail
  233. End of week dump. — ksabo / detail
  234. added pressure jump into source for AV sensor in two-phase porous media — allmaras / detail
  235. minor changes to SPE10 test case: added #ifdef's for log(pn), table lookup; changed — allmaras / detail
  236. added #define label for pressure jump in AV sensor source; updated unit test — allmaras / detail
  237. added new closure option (but commented off for now). updated system test case for four-eqn IBL3D on stagnation flow BL — shunz / detail
  238. zero guard for smoothabs0 — allmaras / detail
  239. updated unit tests to incorporate pressure jumps in sensor source for two-phase AV — allmaras / detail
  240. Use 2 MPI processors on macOS with Jenkins. Make TetGen optional again. — galbramc / detail
  241. Fix for finding boost — galbramc / detail
  242. Some chemsitry model unit tests - need before source term testing. — ksabo / detail
  243. Fix for 2 MPI procs on macOS — galbramc / detail
  244. Various CMake fixes — galbramc / detail
  245. Fix BuildBoost — galbramc / detail
  246. vibrational relaxation time unit tests — ksabo / detail
  247. LIP solver can consume CAPS mesh — galbramc / detail
  248. Update minimum ESP version to 1.18 — galbramc / detail
  249. Relax EGADS version requirement — galbramc / detail
  250. Fix link error — galbramc / detail
  251. Missed a file — galbramc / detail
  252. More link error fixes — galbramc / detail
  253. More link fixes — galbramc / detail
  254. Exlicit Exception instantiations. Bias for Python 3 with CMake — galbramc / detail
  255. added continuousGlobalMap() for block 2x2 AES — shunz / detail
  256. PETSc now works for coupled IBL3 block AES 3x3 — shunz / detail
  257. minor refactoring — shunz / detail
  258. cleaned up and merged sandbox cases — shunz / detail
  259. use reference velocity scale consistently — shunz / detail
  260. turned on quasi-2D closure relations for 3-eq 3D IBL — shunz / detail
  261. Missed one instantiation. More optional TetGen fixes — galbramc / detail
  262. Various small fixes — galbramc / detail
  263. added exceptions for petsc MPI implementations for block AES 3x3 — shunz / detail
  264. turned off 3D IBL transition and lag equations for system test (for now) — shunz / detail
  265. turned off some TBD MPI stuff in petsc block AES 3x3 to avoid compiling errors — shunz / detail
  266. fixed unused variable warnings — shunz / detail
  267. fix compiling error in sandbox case — shunz / detail
  268. Added quasi-2D turbulent closure to four-eqn IBL3 formulation — shunz / detail
  269. fixed deprecated macro — shunz / detail
  270. First set of updates from cleaning up develop branch. Contains code and tests related to adding a spatially varying a-field (i.e. from previous adapt soln) in Homotopy — blsc / detail
  271. Removed sourceCoarse and sourceFine in lieu of sourceTraceJump — galbramc / detail
  272. Move Surreal into SANS namespace — galbramc / detail
  273. Forgot a file — galbramc / detail
  274. Missed MPI SurrealS — galbramc / detail
  275. Add missing include — galbramc / detail
  276. Remove SurrealS(Real,Real) constructor — galbramc / detail
  277. More fixes for modified Surreal — galbramc / detail
  278. Fix warnings — galbramc / detail
  279. Setup to run VMSDBR2 on fixed Joukowski meshes — galbramc / detail
  280. Fix uninitialized variable warnings — galbramc / detail
  281. Fix vera warning — galbramc / detail
  282. src/LinearAlgebra/ — blsc / detail
  283. First pass at prototyping a globally constrained algebraic equation set — blsc / detail
  284. Updates to globally constrained equations to include condensation of matrix in PETSc — blsc / detail
  285. Updates for first round of parallelizing the homotopy — blsc / detail
  286. Parallel homotopy appears to be working — blsc / detail
  287. EGADS interface refactoring. Added meanline blade. — galbramc / detail
  288. Fixes for EGTess — galbramc / detail
  289. More fixes to the EGADS cleanup — galbramc / detail
  290. More EGADS fixes — galbramc / detail
  291. Fix compile error — galbramc / detail
  292. Fix warning — galbramc / detail
  293. Fix more warnings — galbramc / detail
  294. A few tweeks on the homotopy and 3D set up — blsc / detail
  295. Updated interface for globally constrained equations so the jacobian for the pde and the constraints are in seperate functions — blsc / detail
  296. The small problem for static condensation is calculated on one processor then broadcast, that way there are on finite precision inconsistencies — blsc / detail
  297. Added template parameter to determine if (PETSc) should do a shur complement from block 2x2. Note, if we're not using PETSc, then the block matrix is solved as is. This is because the shur complement is only a work around for parallel communication issues. — blsc / detail
  298. ... because if you hard code tecplot for 4 levels of grid refinement on output you get a 300Gb tecplot file in 3D ... — blsc / detail
  299. Refactor CubicCamber. Add Normal vector field. — galbramc / detail
  300. Forgot files — galbramc / detail
  301. Add missing includes — galbramc / detail
  302. Number of global constraints is now a runtime option. The global coupling uses a CRS matrix structure, as opposed to MatrixD, since the CRS structure is already there. — blsc / detail
  303. Fixed bug with small system decomposition. The matrix was incorrectly sized for runtime constraints — blsc / detail
  304. Fix field normal vector check for parallel — galbramc / detail
  305. Resolved issues that came up due to merging — blsc / detail
  306. First pass at prototyping a globally constrained algebraic equation set — blsc / detail
  307. Updates to globally constrained equations to include condensation of matrix in PETSc — blsc / detail
  308. Updates for first round of parallelizing the homotopy — blsc / detail
  309. Parallel homotopy appears to be working — blsc / detail
  310. A few tweeks on the homotopy and 3D set up — blsc / detail
  311. Updated interface for globally constrained equations so the jacobian for the pde and the constraints are in seperate functions — blsc / detail
  312. The small problem for static condensation is calculated on one processor then broadcast, that way there are on finite precision inconsistencies — blsc / detail
  313. Added template parameter to determine if (PETSc) should do a shur complement from block 2x2. Note, if we're not using PETSc, then the block matrix is solved as is. This is because the shur complement is only a work around for parallel communication issues. — blsc / detail
  314. ... because if you hard code tecplot for 4 levels of grid refinement on output you get a 300Gb tecplot file in 3D ... — blsc / detail
  315. Number of global constraints is now a runtime option. The global coupling uses a CRS matrix structure, as opposed to MatrixD, since the CRS structure is already there. — blsc / detail
  316. Fixed bug with small system decomposition. The matrix was incorrectly sized for runtime constraints — blsc / detail
  317. Clean up after merging from develop — blsc / detail
  318. More merging issues — blsc / detail
  319. Added RotorSource for Euler equations — galbramc / detail
  320. Various small fixes — galbramc / detail
  321. Fix compile error — galbramc / detail
  322. A few more fixes — galbramc / detail
  323. Fix unit test error — galbramc / detail
  324. Bulk of unit tests done. — ksabo / detail
  325. Update refine libraries — galbramc / detail
  326. src/ — blsc / detail
  327. Missing unit tests and ability to daisy chain globally constrained algebraic equation sets — blsc / detail
  328. Missed an update for the serial version of PETSc — blsc / detail
  329. Further speed improvements — galbramc / detail
  330. Fix VMSDBR2 adjoint bug. Update refine build. — galbramc / detail
  331. Some fixes for the Rotor source — galbramc / detail
  332. Trying DG Normal vector field — galbramc / detail
  333. Correction to Rotor source — galbramc / detail
  334. One more fix to Rotor source — galbramc / detail
  335. One more fix — galbramc / detail
  336. updated file names — ksabo / detail
  337. updated file names (round 2) — ksabo / detail
  338. Fixed warnings and other minor things — ksabo / detail
  339. 150 char line error fix — ksabo / detail
  340. used brackets for matrix call, fixed now — ksabo / detail
  341. Some cleanup of PETSc Shur solve — galbramc / detail
  342. Fixes for MKL with Block 2x2 — galbramc / detail
  343. Bug fixes for homotopy and some 3D bugs — blsc / detail
  344. Fixed a few bug (undefined param and timeout) — blsc / detail
  345. fixed stack-buffer-overflow error in temperature data structures — ksabo / detail
  346. Missing instantiations, BC that only existed for local testing purposes removed. — blsc / detail
  347. fixed read access error from electron indexing bug — ksabo / detail
  348. fixed compiler warnings — ksabo / detail
  349. dropped tol to 1e-11 from 1e-12, removed extra {} that may have been causing an issue — ksabo / detail
  350. renamed test suite (explicitly added TCNE to name) - was causing conflict error — ksabo / detail
  351. SANS_Nightly fix, efma line compiler warning deleted — ksabo / detail
  352. updated reverse reaction rate temperature calculations — ksabo / detail
  353. Add trace quadrature checking to isValidCell_VMSD. — hcarson / detail
  354. Refactored global constraintes — galbramc / detail
  355. Forgot files — galbramc / detail
  356. Compile fixes — galbramc / detail
  357. Fix unit test — galbramc / detail
  358. Added a new ParamFieldBuilder specialization for (log-permeability, porosity, gen-H) param fields. Added a unit test. — savithru / detail
  359. added pde/IncompressibleNS — allmaras / detail
  360. added 1D incompressible NS for fully developed channel flow with sansLG Robin BCs — allmaras / detail
  361. added 2nd weighting parameter to weightBC; 1st parameter is for Dirichlet / adjoint state, — allmaras / detail
  362. added 2nd weighting parameter to weightBC; missed one file — allmaras / detail
  363. added Robin_sansLG BC catagory — allmaras / detail
  364. IO file check flag -> true — allmaras / detail
  365. 1D incompressible NS solver for fully developed channel flow — allmaras / detail
  366. bug fixes — allmaras / detail
  367. Major refactor of the two-phase PDE classes to support a (log-permeability, porosity) param-field. The artificial viscosity classes use a (log-permeability, porosity, log-H) param-field. — savithru / detail
  368. Updated ErrorEstimate_DGBR2 instantiations — savithru / detail
  369. Updated tests. All unit and system tests compile now. — savithru / detail
  370. added test for -Identity() initializer — allmaras / detail
  371. Fix so -DLA::Identity() works properly — galbramc / detail
  372. added BCs for 1D RANS-SA for channel flow — allmaras / detail
  373. unit tests for 1D RANS-SA for channel flow — allmaras / detail
  374. unit tests: missed one — allmaras / detail
  375. unit test output pattern test files — allmaras / detail
  376. 1D RANS-SA test case for fully developed channel flow -- preliminary — allmaras / detail
  377. updated test case — allmaras / detail
  378. More refactoring to get sandbox cases to compile. — savithru / detail
  379. Fixed a unit test. — savithru / detail
  380. Missed a sandbox case. — savithru / detail
  381. Reverting include path for boost output_test_stream — savithru / detail
  382. made algebraic eqn-set files more consistent between Galerkin and Galerkin_Stabilized — allmaras / detail
  383. instantiated VectorS<2> output — allmaras / detail
  384. Updated discretizations and PDE interfaces to use both paramL and paramR when evaluating fluxAdvectiveUpwind or fluxAdvectiveUpwindSpaceTime. This is important for the two-phase flow PDE, where the temporal flux depends on the porosity param-field value (which can be heterogeneous). — savithru / detail
  385. Update 2D ugrid reader for UNFORATTED (.r8.ugrid) files. — galbramc / detail
  386. Fix warning — galbramc / detail
  387. Fix warning — galbramc / detail
  388. added Robin BC dot product tests; currently commented out, since they fail to compile — allmaras / detail
  389. added Tensor-Vector dot-products: e.g. dot( VectorX, TensorMatrixQ ) — allmaras / detail
  390. clean up: MatrixS<D,D,MatrixQ> -> TensorMatrixQ — allmaras / detail
  391. needed additional #include's — allmaras / detail
  392. added ND ctor for BCs: BC( PDE, BCArgs ) — allmaras / detail
  393. added dist parameters to certain functions; added jacobianMasterState; code clean-up — allmaras / detail
  394. added skin friction / drag output for 1D incompressible NS channel flow — allmaras / detail
  395. added #if's to try different combinations of '(gradphi . K . nHat) betaBC^t rsdBC'; — allmaras / detail
  396. Updated FV-TPFA discretization to work for heterogeneous properties + some cleanup. — savithru / detail
  397. Added missing includes — savithru / detail
  398. removed dot-products supporting (K . nHat) operator in Robin_sansLG BCs, and reverted — allmaras / detail
  399. added IncompressibleNSLib to unit test builders — allmaras / detail
  400. latest sandbox tests for 1D fully developed channel flow — allmaras / detail
  401. Updated global contraints. Solve rotor speed at specified power. — galbramc / detail
  402. Compile fixes — galbramc / detail
  403. Add missing files — galbramc / detail
  404. added optional parameter to output_gnuplot for number of points per element (default remains 11) — allmaras / detail
  405. code cleanup for 1D NS/RANS — allmaras / detail
  406. solution function for 1D RANS: analytic law-of-the-wall for SA — allmaras / detail
  407. missed a pattern file — allmaras / detail
  408. missed a unit test file — allmaras / detail
  409. updated 1D RANS fully developed channel flow case to (a) work, (b) output useful data, — allmaras / detail
  410. Fix all output functionals to properly work in parallel — galbramc / detail
  411. name change for test suite to avoid link conflict for 'make unit' — allmaras / detail
  412. Fix compile error — galbramc / detail
  413. Compile fix — galbramc / detail
  414. Missing include — galbramc / detail
  415. More missing includes — galbramc / detail
  416. More missing includes — galbramc / detail
  417. reverted to depricated include directory for <boost/test/unit_test.hpp> — allmaras / detail
  418. More missing include fixes — galbramc / detail
  419. Upgrade to AFLR 10.8.7 — galbramc / detail
  420. Update AFLR libraries — galbramc / detail
  421. src/ — blsc / detail
  422. Updated BC::isValidState interface so mitState BCs can check if the boundary state generated is also valid — blsc / detail
  423. Removed file that didn't work out and shouldn't have been commited — blsc / detail
  424. Fix AFLR library order — galbramc / detail
  425. Formatting fixes — blsc / detail
  426. Missing instantiation and arguments flipped causing a unit test to fail — blsc / detail
  427. Fixes for AFLR4 and EGADS updates — galbramc / detail
  428. Fix for wake sheets — galbramc / detail
  429. Various small fixes — galbramc / detail
  430. Allow specified interior traces — galbramc / detail
  431. Compile fixes. Allow UnionJack to work in parallel — galbramc / detail
  432. Fix compile error — galbramc / detail
  433. removed 1D incompressible NS channel flow test case -- won't compile due to double — allmaras / detail
  434. Fixes for parallel specified interior traces. Added ParkMMS and EntropyProduction output. — galbramc / detail
  435. Forgot files — galbramc / detail
  436. Fixes for parallel interior traces — galbramc / detail
  437. Fix uninitialized data — galbramc / detail
  438. Fix intel warning — galbramc / detail
  439. Added new SPE10 cases for time-marching FV and DGBR2+AV. — savithru / detail
  440. Fix parallel DG DOF indexing for multiple cell groups — galbramc / detail
  441. fixes for jenkins squawks — allmaras / detail
  442. Fix EG zombies — galbramc / detail
  443. missing #include <vector> — allmaras / detail
  444. fixed warning for un-used typedef — allmaras / detail
  445. added isValidState with (x,time,nx,q) params for Dirichlet — allmaras / detail
  446. Hardening ReadSolution_PX to throw uniformly across MPI if rank 0 fails to load the file. Can now use try catch around restart blocks! — hcarson / detail
  447. fixed uninitialized variables in test — allmaras / detail
  448. removed redundant instantiation — allmaras / detail
  449. removed unneeded print statements and a typo — hcarson / detail
  450. Nightly fixes — galbramc / detail
  451. Various small fixes — galbramc / detail
  452. Fix to erroneous logic — hcarson / detail
  453. Make safe_at work for any container type, and reduce code duplication — hcarson / detail
  454. Nightly fixes — galbramc / detail
  455. More nightly fixes — galbramc / detail
  456. fixed nightly warning on unused variable — allmaras / detail
  457. Relax execution time — galbramc / detail
  458. Changed isValid to check: qbar + qp at cell quads, and qbar, qbar + qpL and qbar + qpR for interior traces. These are the only values used in flux evaluation — hcarson / detail
  459. Fix accross spelling. Fix AFLR3 to distribute in parallel. Update interior trace parallel construction. — galbramc / detail
  460. Reduce maximum grid size for PDESourceOnly_Projection_btest — galbramc / detail
  461. Add latest PETSc version — galbramc / detail
  462. Nightly fix — galbramc / detail
  463. Various CMake fixes — galbramc / detail
  464. Fix for building Tetgen — galbramc / detail
  465. Don't ues intel compiler to compile TetGen — galbramc / detail
  466. Nightly fix — galbramc / detail
  467. Relax tolerance for nightly test — galbramc / detail
  468. Update refine, TetGen, and AFLR. Added ParameterDictList for a list of dictionaries. Rename MeanlineBlade to CamberBlade. — galbramc / detail
  469. Correct AFLR version — galbramc / detail
  470. Forgot tetgen patch — galbramc / detail
  471. Various fixes — galbramc / detail
  472. Fix library order — galbramc / detail
  473. Relax ping tolerance — galbramc / detail
  474. Comment out file dump — galbramc / detail
  475. Nightly fixes — galbramc / detail

#266 (Sep 26, 2020, 1:52:07 AM)

  1. First pass at structuring TCNE pde, a little messy — blsc / detail
  2. TCNE stuff — ksabo / detail
  3. relocate QauxvInterpret forward declaration in prep for 3D stuff — shunz / detail
  4. Added basic stuff for 3D IBL — shunz / detail
  5. Minor cleanup — shunz / detail
  6. Initial pass on PDEIBL3D — shunz / detail
  7. Filled in 3D IBL closure with fully 3D components set to zero — shunz / detail
  8. Added BCNone for IBL3D — shunz / detail
  9. added a working version of sandbox case for IBL3D — shunz / detail
  10. Added a sheet grid of triangles in 3D for IBL3D — shunz / detail
  11. Added instantiation — shunz / detail
  12. Intermediate commit — shunz / detail
  13. Working on integrands for first 3D IBL case — shunz / detail
  14. More fixes to integrand classes for IBL3D — shunz / detail
  15. Fixed instantiations for IBL3D — shunz / detail
  16. Add explicit instantiations and fix typos in closure class — shunz / detail
  17. Initial version of local Cartesian basis construction for 3D IBL — shunz / detail
  18. Minor cleanup — shunz / detail
  19. Fix constuction of q1 and q2 vectors in case of stagnation flows — shunz / detail
  20. Add velocity gradient calculation in cell integrand of 3D IBL — shunz / detail
  21. Refactor and add a 2D stagnation flow test case — shunz / detail
  22. Add a 3D quad grid — shunz / detail
  23. Update cmake list for unit grid test — shunz / detail
  24. Fix typo in 3D quad sheet grid — shunz / detail
  25. fix bug in qauxv gradient calculation in 3D IBL cell integrand — shunz / detail
  26. Fix the scale and dimension of dissipation integral in 3D integral — shunz / detail
  27. fix a typo in thickness identity — shunz / detail
  28. Add more options to 3D IBL stagnation flow case, including quad grid, solution initialization, — shunz / detail
  29. one more bug fix in cell integrand for 3D IBL — shunz / detail
  30. Bugfix in calculation of trace unit normal vector for area cells in 3D — shunz / detail
  31. Add Nishida's crossflow closure.  Add pyrite check of stagnation flow case for 3D IBL.  Minor addition for debugging in PDEIBL3D — shunz / detail
  32. fix dependents of refactoring of GetSolnDofCell_IBL — shunz / detail
  33. Add a 3D flat plate source panel method but haven't tested yet — shunz / detail
  34. intermediate commit: minor clenaup and add guards. — shunz / detail
  35. intermediate commit: working on 3D coupled IBL for torpedo cass — shunz / detail
  36. add 3x3 equation system — shunz / detail
  37. typo fix. add partial instantiations for system 3x3 vector and matrix types — shunz / detail
  38. add linesearch data type for 3x3 equation system — shunz / detail
  39. add missing include — shunz / detail
  40. intermediate commit: fix many compiling errors in the way of running torpedo case for IBL3D. switching computer to continue the work... — shunz / detail
  41. refactor projection to Qauxi — shunz / detail
  42. add interior trace integrand for projection onto Qauxi — shunz / detail
  43. minor fix — shunz / detail
  44. add instantiations for IBL3D torpedo case — shunz / detail
  45. add instantiations for coupled IBL3D — shunz / detail
  46. remove unnecessary assert — shunz / detail
  47. fix for coupled IBL case to compile and run — shunz / detail
  48. fix uninitialized dummy DOFs — shunz / detail
  49. fix setDOFFrom in Qauxv 3D (missing q_y previously) — shunz / detail
  50. Coupled 3D IBL case converged on some simple variants of the torpedo case: linear and mildly nonlinear radial velocity distribution with attached laminar BLs — shunz / detail
  51. Tried triangle grid as well: fine on radially linear velocity distribution but couldn't converge on a more nonlinear case — shunz / detail
  52. cleaned up unused stuff — shunz / detail
  53. refactor SetIBLoutputCellGroup to accommodate both 3D and 2D IBL — shunz / detail
  54. remove outdated include — shunz / detail
  55. more refactoring of SetIBLoutputCellGroup for 3D IBL.  working progress.  switching computer — shunz / detail
  56. intermediate commit. switching computer. — shunz / detail
  57. enable tecplot output for 3D IBL — shunz / detail
  58. added PyDict options for Verbose and writeMarketMatrix for UMFPACK — allmaras / detail
  59. add full-state BC for IBL3D with corresponding boundary trace integrand.  verified on an uncoupled Blasius case — shunz / detail
  60. add a coupled IBL3D Blasius case — shunz / detail
  61. implement PTC for coupled IBL 3x3 system — shunz / detail
  62. add commented-out stuff for turning off laminar amplification and lag equations in IBL3D — shunz / detail
  63. fix typo in commented-out stuff — shunz / detail
  64. enable rotated mesh for IBL3D torpedo case — shunz / detail
  65. set up a torpedo with grid aligned with xy axes.  turned off laminar amplification and lag equations [need to be brought back after testing purely laminar BLs] — shunz / detail
  66. minor change to test case — shunz / detail
  67. minor refactoring on Blasius inflow BC params — shunz / detail
  68. rename test cases — shunz / detail
  69. speed up panel-related jacobian calculation using cached influence matrix in place of surrealized qauxifld — shunz / detail
  70. add jacobian timing for refactoring purpose — shunz / detail
  71. add similar (to DBL3) Falkner-Skan inflow bc for IBL3D with non-constant inflow state. set up a tornado case with rotated xy grid to compare with DBL3 — shunz / detail
  72. minor refactoring of test cases — shunz / detail
  73. remove trivial zero z velocity component to speed up panel method — shunz / detail
  74. minor refactoring — shunz / detail
  75. typo fix — shunz / detail
  76. precompute inviscid velocity for panel, which resulted in O(10) speedup in related residual calculation. fix DOF indexing in residual/jacobian precomputation — shunz / detail
  77. define macro to comment off some lines for timing/refactoring — shunz / detail
  78. minor comments — shunz / detail
  79. add ping test for coupled IBL in 3x3 block system — shunz / detail
  80. attempt to mirror tets in XField3D_Box_Tet_X1_WakeCut — allmaras / detail
  81. reverted to original prism-split coding; remainder of code is hard-coded for the — allmaras / detail
  82. fix typo in Cf2 closure, although it didn't change the torpedo case results much — shunz / detail
  83. Fix dot for VectorBlock — galbramc / detail
  84. added PyDict control of wake & Kutta Nitsche parameters — allmaras / detail
  85. Added test of sourceCoarse and sourceFine for RANSSA with artificial viscosity. — blsc / detail
  86. Added missing sourceCoarse and sourceFine functions from pressure gradient sensor and added unit test — blsc / detail
  87. added PyDict solve check option to UMFPACK; currently commented out actual check — allmaras / detail
  88. Fixes for checking the UMFPACK solve — galbramc / detail
  89. Missed adding PDEEulermitAVDiffusion2D.h to the commit. This file has specialized versions of sourceCoarse and sourceFine for a param that is a H-tensor and distance function. — blsc / detail
  90. add a wall term to dissipation relation of Nishida's closure, although it didn't affect things much — shunz / detail
  91. add a test case of fx67-k-170 airfoil — shunz / detail
  92. minor edit to output filenames at convergence failures — shunz / detail
  93. resolve merge conflict — shunz / detail
  94. changed default flux of IBL to LF flux — shunz / detail
  95. add a test case for drag polar — shunz / detail
  96. ran drag polar cases — shunz / detail
  97. refactored reference speed in transition model — shunz / detail
  98. typo fix — shunz / detail
  99. rename working directory — shunz / detail
  100. refator characteristic speed for PTC — shunz / detail
  101. refator characteristic speed for PTC — shunz / detail
  102. Add unit tests demonstrating that the step matrix calculation is stable to scaling — hcarson / detail
  103. update pyrite files — shunz / detail
  104. refactor 3D IBL closure API to allow for alternative closure models — shunz / detail
  105. save 3D closure relations in a separate header — shunz / detail
  106. add neural net closure for 3D IBL — shunz / detail
  107. run drag polar on finer grids — shunz / detail
  108. switch to run on acdl desktop — shunz / detail
  109. fix memory leak warning caused by accessing index -1 — shunz / detail
  110. minor update — shunz / detail
  111. mucking with PETSc for IBL3 — shunz / detail
  112. instantiate MKL_PARDISO solver for matrix block 3x3 — shunz / detail
  113. tried MKL_PARDISO solver for IBL3 — shunz / detail
  114. Adding test that Explicitly calculating the step from the metric directly is not unstable. Cases in 2D and 3D, showing stability to an AR of 2^10 in 3D, and 2^64 in 2D. — hcarson / detail
  115. minor typo fix — shunz / detail
  116. fix formatting — shunz / detail
  117. add mitLG BC for IBL3 — shunz / detail
  118. minor refactoring — shunz / detail
  119. switch to the same input parameters as DBL3 — shunz / detail
  120. add LF flux to IBL3 — shunz / detail
  121. Changes to ErrorModel to allow for the new exact nodal metric calculation — hcarson / detail
  122. Changes to ErrorModel to allow for the new exact nodal metric calculation — hcarson / detail
  123. pre merge add.... wth? — hcarson / detail
  124. add Dirichlet mitLG inflow BC to a Blasius flow test case — shunz / detail
  125. Jenkins fix — hcarson / detail
  126. reverting to the develop branch of ErrorModel — hcarson / detail
  127. fixes to case — hcarson / detail
  128. fixes to case — hcarson / detail
  129. intermediate commit: added 4-equation neural net closure model.  working on 4-equation IBL3D pde class — shunz / detail
  130. remove extraneous tamplate keyword — shunz / detail
  131. Various changes for arthur: Commented the adjoint_wo_p things from SolverInterface_VMSD_BR2, reducing the memory reqs. Made the Deltawing adapts more uniform and fit with the plan. Added the Solve case for the VMSD delta wing. — hcarson / detail
  132. added soruce terms for the lateral curvature equation of IBL3 — shunz / detail
  133. removed re-definition — shunz / detail
  134. refactored and added PDE and BC for four-equation 3D IBL class.  added a starting point for torpedo case — shunz / detail
  135. separated classes of 3D IBL and IBLFourEqn — shunz / detail
  136. generalized templates in IBL3-related integrands — shunz / detail
  137. added instantiations for four-equation 3D IBL — shunz / detail
  138. fixed instantiation typo — shunz / detail
  139. turned on verbose linesearch printout — shunz / detail
  140. added a visous-only Blasius case for 4-equation 3D IBL.  added a missing include — shunz / detail
  141. refactored reference coordinate gradient for speedup.  add/edit comments for clarity — shunz / detail
  142. typo fix: gradqe*E_qesq.  minor edits — shunz / detail
  143. turned off printout in unit testing — shunz / detail
  144. cosmetic changes — shunz / detail
  145. refactored neural net closure models: H22, Hd1, Hc2 — shunz / detail
  146. added output for four-equation 3D IBL — shunz / detail
  147. unit tests and associated modifications — ksabo / detail
  148. fixed auxi equation (wall transpiration): previous mass flux missed crossflow component — shunz / detail
  149. previous fix to wall transpiration (auxi equation) didn't fix.  it is now fixed.  added unit test — shunz / detail
  150. minor tweak — shunz / detail
  151. minor cleanup — shunz / detail
  152. add velocity gradient output to IBL — shunz / detail
  153. add instantiation — shunz / detail
  154. added IBL3 closure relations in the form of analytic formulae — shunz / detail
  155. tested something with git (still learning this thing) — ksabo / detail
  156. salt deposit #1 (updated files I accidentally erased...) — ksabo / detail
  157. refactored neural net closure implementation — shunz / detail
  158. recoded jacobianMasterState method, still need to test it — ksabo / detail
  159. added a set of IBL3 closure models based on analytic formulae — shunz / detail
  160. restored four-equation neural net closure to its original working state — shunz / detail
  161. switch to using 4-equation IBL3 closure based on analytic formulae.  results are similar or slightly better than neural net closure — shunz / detail
  162. fixed a typo (which fortunately wasn't used yet).  added exception throws — shunz / detail
  163. fixed include filename — shunz / detail
  164. removed redundant exceptions — shunz / detail
  165. Q1DConservative for TCNE is functionally completed (only needs aesthetic changes at this point) — ksabo / detail
  166. refactored four-eqn IBL3 curve-fit closure — shunz / detail
  167. conformed to vera check: should not use "using namespace" in header files — shunz / detail
  168. fixed unit tests for after API refactoring — shunz / detail
  169. fixed unit tests for the  previous API refactoring — shunz / detail
  170. fixed ping tests: finite difference step size — shunz / detail
  171. added ping test for four-eqn IBL3 — shunz / detail
  172. added Blasius flow test case for four-eqn IBL3D. some cleanup — shunz / detail
  173. added include — shunz / detail
  174. added includes — shunz / detail
  175. checked four-eqn IBL3D on Blasius case and stagnation radial flow — shunz / detail
  176. added a stagnation flow toy case.  mucked with IBL3 for torpedo case — shunz / detail
  177. fixed toy case to keep up with API refactoring — shunz / detail
  178. added missing include related to MPI — shunz / detail
  179. suppresed file dump in system test — shunz / detail
  180. added assertions — shunz / detail
  181. add some derivates to the IBL3 output — shunz / detail
  182. relaxed pyrite tolerance — shunz / detail
  183. relaxed pyrite tolerance for intel compiler.  speed up ping test to avoid time-out — shunz / detail
  184. renamed output — shunz / detail
  185. added and refactored IBL3 output — shunz / detail
  186. make verbose_ if-tests consistent throughout — allmaras / detail
  187. fixed screen dump for checkSolve_ when residuals above tolerance — allmaras / detail
  188. added option to dump solution at each Newton iteration — allmaras / detail
  189. added pressure gradient for space-time — allmaras / detail
  190. added instantiations, etc, needed for log(p) variables with look-up porosity/permeability tables — allmaras / detail
  191. added grid-Laplacian artificial viscosity for pressure; currently hard-coded diffusion coefficient — allmaras / detail
  192. trying to fix gnu9 compiler warning — shunz / detail
  193. added "#include <utilities>" for std::move; added unit test for VectorBlock_3 — allmaras / detail
  194. fixed vera line-length squawk — allmaras / detail
  195. fixed vera line-length squawk — allmaras / detail
  196. fixed vera line-length squawk — allmaras / detail
  197. add a new curve fit model based on low-dissipative DBL3 data — shunz / detail
  198. allow for uncoupled/viscou-only IBL3 solution by tweaking the panel method — shunz / detail
  199. fixed VectorBlock_3 unit test; made ::m() and ::n() static, so 2, 3, and 4 are all consistent — allmaras / detail
  200. forgot to save changes in the last commit... — shunz / detail
  201. relaxed Jenkins timeout threshold for some large ping tests — shunz / detail
  202. minor tweak — shunz / detail
  203. speed up ping test by turning off some redundant sub-block checks — shunz / detail
  204. fix cppcheck error — shunz / detail
  205. speed up ping test by turning off tests on some sub-blocks of the jacobian — shunz / detail
  206. added directory creation for output files — allmaras / detail
  207. Don't use python2 with jenkins — galbramc / detail
  208. removed old version of adjoint-compatible potential solver for Hershey wing — allmaras / detail
  209. temporarily disabled tests involving artificial viscosity fluxes if USE_PRESSURE_AV defined — allmaras / detail
  210. make VectorBlock test-suite names unique (so make unit_build works) — allmaras / detail
  211. added unit tests for circulation integrations — allmaras / detail
  212. added circulation integrations for lift & roll as functional outputs — allmaras / detail
  213. Add Q3 and Q4 elements to Gmsh IO — galbramc / detail
  214. clean-up of circulation-base functional code/test; added drag but #ifdef'ed out, as it's not complete — allmaras / detail
  215. intermediate commit: working on hooking up PETSc for block algebraic equation system — shunz / detail
  216. Fix finding macOS Accelerate BLAS — galbramc / detail
  217. cppcheck fixes for nightly — allmaras / detail
  218. moving back to develop — hcarson / detail
  219. add empty definition to fix undefined reference in weekly test — shunz / detail
  220. add empty definition to fix undefined reference in weekly test — shunz / detail
  221. add empty definition to fix undefined reference in weekly test — shunz / detail
  222. vera fix — hcarson / detail
  223. added a new set of closure relations based on low-dissipation DBL3 data — shunz / detail
  224. updated RthCf1 correlation coefficient — shunz / detail
  225. fixed call to undefined function — shunz / detail
  226. removing unneeded test — hcarson / detail
  227. minor updates to TCNE stuff (getting back into it) — ksabo / detail
  228. added mitLG BC for four equation IBL3D — shunz / detail
  229. fixing unused var — hcarson / detail
  230. Update for latest version of refine — galbramc / detail
  231. missing space — hcarson / detail
  232. Added vpr11@mit.edu to DeveloperEmailAddresses — vpr11 / detail
  233. End of week dump. — ksabo / detail
  234. added pressure jump into source for AV sensor in two-phase porous media — allmaras / detail
  235. minor changes to SPE10 test case: added #ifdef's for log(pn), table lookup; changed — allmaras / detail
  236. added #define label for pressure jump in AV sensor source; updated unit test — allmaras / detail
  237. added new closure option (but commented off for now). updated system test case for four-eqn IBL3D on stagnation flow BL — shunz / detail
  238. zero guard for smoothabs0 — allmaras / detail
  239. updated unit tests to incorporate pressure jumps in sensor source for two-phase AV — allmaras / detail
  240. Use 2 MPI processors on macOS with Jenkins. Make TetGen optional again. — galbramc / detail
  241. Fix for finding boost — galbramc / detail
  242. Some chemsitry model unit tests - need before source term testing. — ksabo / detail
  243. Fix for 2 MPI procs on macOS — galbramc / detail
  244. Various CMake fixes — galbramc / detail
  245. Fix BuildBoost — galbramc / detail
  246. vibrational relaxation time unit tests — ksabo / detail
  247. LIP solver can consume CAPS mesh — galbramc / detail
  248. Update minimum ESP version to 1.18 — galbramc / detail
  249. Relax EGADS version requirement — galbramc / detail
  250. Fix link error — galbramc / detail
  251. Missed a file — galbramc / detail
  252. More link error fixes — galbramc / detail
  253. More link fixes — galbramc / detail
  254. Exlicit Exception instantiations. Bias for Python 3 with CMake — galbramc / detail
  255. added continuousGlobalMap() for block 2x2 AES — shunz / detail
  256. PETSc now works for coupled IBL3 block AES 3x3 — shunz / detail
  257. minor refactoring — shunz / detail
  258. cleaned up and merged sandbox cases — shunz / detail
  259. use reference velocity scale consistently — shunz / detail
  260. turned on quasi-2D closure relations for 3-eq 3D IBL — shunz / detail
  261. Missed one instantiation. More optional TetGen fixes — galbramc / detail
  262. Various small fixes — galbramc / detail
  263. added exceptions for petsc MPI implementations for block AES 3x3 — shunz / detail
  264. turned off 3D IBL transition and lag equations for system test (for now) — shunz / detail
  265. turned off some TBD MPI stuff in petsc block AES 3x3 to avoid compiling errors — shunz / detail
  266. fixed unused variable warnings — shunz / detail
  267. fix compiling error in sandbox case — shunz / detail
  268. Added quasi-2D turbulent closure to four-eqn IBL3 formulation — shunz / detail
  269. fixed deprecated macro — shunz / detail
  270. First set of updates from cleaning up develop branch. Contains code and tests related to adding a spatially varying a-field (i.e. from previous adapt soln) in Homotopy — blsc / detail
  271. Removed sourceCoarse and sourceFine in lieu of sourceTraceJump — galbramc / detail
  272. Move Surreal into SANS namespace — galbramc / detail
  273. Forgot a file — galbramc / detail
  274. Missed MPI SurrealS — galbramc / detail
  275. Add missing include — galbramc / detail
  276. Remove SurrealS(Real,Real) constructor — galbramc / detail
  277. More fixes for modified Surreal — galbramc / detail
  278. Fix warnings — galbramc / detail
  279. Setup to run VMSDBR2 on fixed Joukowski meshes — galbramc / detail
  280. Fix uninitialized variable warnings — galbramc / detail
  281. Fix vera warning — galbramc / detail
  282. src/LinearAlgebra/ — blsc / detail
  283. First pass at prototyping a globally constrained algebraic equation set — blsc / detail
  284. Updates to globally constrained equations to include condensation of matrix in PETSc — blsc / detail
  285. Updates for first round of parallelizing the homotopy — blsc / detail
  286. Parallel homotopy appears to be working — blsc / detail
  287. EGADS interface refactoring. Added meanline blade. — galbramc / detail
  288. Fixes for EGTess — galbramc / detail
  289. More fixes to the EGADS cleanup — galbramc / detail
  290. More EGADS fixes — galbramc / detail
  291. Fix compile error — galbramc / detail
  292. Fix warning — galbramc / detail
  293. Fix more warnings — galbramc / detail
  294. A few tweeks on the homotopy and 3D set up — blsc / detail
  295. Updated interface for globally constrained equations so the jacobian for the pde and the constraints are in seperate functions — blsc / detail
  296. The small problem for static condensation is calculated on one processor then broadcast, that way there are on finite precision inconsistencies — blsc / detail
  297. Added template parameter to determine if (PETSc) should do a shur complement from block 2x2. Note, if we're not using PETSc, then the block matrix is solved as is. This is because the shur complement is only a work around for parallel communication issues. — blsc / detail
  298. ... because if you hard code tecplot for 4 levels of grid refinement on output you get a 300Gb tecplot file in 3D ... — blsc / detail
  299. Refactor CubicCamber. Add Normal vector field. — galbramc / detail
  300. Forgot files — galbramc / detail
  301. Add missing includes — galbramc / detail
  302. Number of global constraints is now a runtime option. The global coupling uses a CRS matrix structure, as opposed to MatrixD, since the CRS structure is already there. — blsc / detail
  303. Fixed bug with small system decomposition. The matrix was incorrectly sized for runtime constraints — blsc / detail
  304. Fix field normal vector check for parallel — galbramc / detail
  305. Resolved issues that came up due to merging — blsc / detail
  306. First pass at prototyping a globally constrained algebraic equation set — blsc / detail
  307. Updates to globally constrained equations to include condensation of matrix in PETSc — blsc / detail
  308. Updates for first round of parallelizing the homotopy — blsc / detail
  309. Parallel homotopy appears to be working — blsc / detail
  310. A few tweeks on the homotopy and 3D set up — blsc / detail
  311. Updated interface for globally constrained equations so the jacobian for the pde and the constraints are in seperate functions — blsc / detail
  312. The small problem for static condensation is calculated on one processor then broadcast, that way there are on finite precision inconsistencies — blsc / detail
  313. Added template parameter to determine if (PETSc) should do a shur complement from block 2x2. Note, if we're not using PETSc, then the block matrix is solved as is. This is because the shur complement is only a work around for parallel communication issues. — blsc / detail
  314. ... because if you hard code tecplot for 4 levels of grid refinement on output you get a 300Gb tecplot file in 3D ... — blsc / detail
  315. Number of global constraints is now a runtime option. The global coupling uses a CRS matrix structure, as opposed to MatrixD, since the CRS structure is already there. — blsc / detail
  316. Fixed bug with small system decomposition. The matrix was incorrectly sized for runtime constraints — blsc / detail
  317. Clean up after merging from develop — blsc / detail
  318. More merging issues — blsc / detail
  319. Added RotorSource for Euler equations — galbramc / detail
  320. Various small fixes — galbramc / detail
  321. Fix compile error — galbramc / detail
  322. A few more fixes — galbramc / detail
  323. Fix unit test error — galbramc / detail
  324. Bulk of unit tests done. — ksabo / detail
  325. Update refine libraries — galbramc / detail
  326. src/ — blsc / detail
  327. Missing unit tests and ability to daisy chain globally constrained algebraic equation sets — blsc / detail
  328. Missed an update for the serial version of PETSc — blsc / detail
  329. Further speed improvements — galbramc / detail
  330. Fix VMSDBR2 adjoint bug. Update refine build. — galbramc / detail
  331. Some fixes for the Rotor source — galbramc / detail
  332. Trying DG Normal vector field — galbramc / detail
  333. Correction to Rotor source — galbramc / detail
  334. One more fix to Rotor source — galbramc / detail
  335. One more fix — galbramc / detail
  336. updated file names — ksabo / detail
  337. updated file names (round 2) — ksabo / detail
  338. Fixed warnings and other minor things — ksabo / detail
  339. 150 char line error fix — ksabo / detail
  340. used brackets for matrix call, fixed now — ksabo / detail
  341. Some cleanup of PETSc Shur solve — galbramc / detail
  342. Fixes for MKL with Block 2x2 — galbramc / detail
  343. Bug fixes for homotopy and some 3D bugs — blsc / detail
  344. Fixed a few bug (undefined param and timeout) — blsc / detail
  345. fixed stack-buffer-overflow error in temperature data structures — ksabo / detail
  346. Missing instantiations, BC that only existed for local testing purposes removed. — blsc / detail
  347. fixed read access error from electron indexing bug — ksabo / detail
  348. fixed compiler warnings — ksabo / detail
  349. dropped tol to 1e-11 from 1e-12, removed extra {} that may have been causing an issue — ksabo / detail
  350. renamed test suite (explicitly added TCNE to name) - was causing conflict error — ksabo / detail
  351. SANS_Nightly fix, efma line compiler warning deleted — ksabo / detail
  352. updated reverse reaction rate temperature calculations — ksabo / detail
  353. Add trace quadrature checking to isValidCell_VMSD. — hcarson / detail
  354. Refactored global constraintes — galbramc / detail
  355. Forgot files — galbramc / detail
  356. Compile fixes — galbramc / detail
  357. Fix unit test — galbramc / detail
  358. Added a new ParamFieldBuilder specialization for (log-permeability, porosity, gen-H) param fields. Added a unit test. — savithru / detail
  359. added pde/IncompressibleNS — allmaras / detail
  360. added 1D incompressible NS for fully developed channel flow with sansLG Robin BCs — allmaras / detail
  361. added 2nd weighting parameter to weightBC; 1st parameter is for Dirichlet / adjoint state, — allmaras / detail
  362. added 2nd weighting parameter to weightBC; missed one file — allmaras / detail
  363. added Robin_sansLG BC catagory — allmaras / detail
  364. IO file check flag -> true — allmaras / detail
  365. 1D incompressible NS solver for fully developed channel flow — allmaras / detail
  366. bug fixes — allmaras / detail
  367. Major refactor of the two-phase PDE classes to support a (log-permeability, porosity) param-field. The artificial viscosity classes use a (log-permeability, porosity, log-H) param-field. — savithru / detail
  368. Updated ErrorEstimate_DGBR2 instantiations — savithru / detail
  369. Updated tests. All unit and system tests compile now. — savithru / detail
  370. added test for -Identity() initializer — allmaras / detail
  371. Fix so -DLA::Identity() works properly — galbramc / detail
  372. added BCs for 1D RANS-SA for channel flow — allmaras / detail
  373. unit tests for 1D RANS-SA for channel flow — allmaras / detail
  374. unit tests: missed one — allmaras / detail
  375. unit test output pattern test files — allmaras / detail
  376. 1D RANS-SA test case for fully developed channel flow -- preliminary — allmaras / detail
  377. updated test case — allmaras / detail
  378. More refactoring to get sandbox cases to compile. — savithru / detail
  379. Fixed a unit test. — savithru / detail
  380. Missed a sandbox case. — savithru / detail
  381. Reverting include path for boost output_test_stream — savithru / detail
  382. made algebraic eqn-set files more consistent between Galerkin and Galerkin_Stabilized — allmaras / detail
  383. instantiated VectorS<2> output — allmaras / detail
  384. Updated discretizations and PDE interfaces to use both paramL and paramR when evaluating fluxAdvectiveUpwind or fluxAdvectiveUpwindSpaceTime. This is important for the two-phase flow PDE, where the temporal flux depends on the porosity param-field value (which can be heterogeneous). — savithru / detail
  385. Update 2D ugrid reader for UNFORATTED (.r8.ugrid) files. — galbramc / detail
  386. Fix warning — galbramc / detail
  387. Fix warning — galbramc / detail
  388. added Robin BC dot product tests; currently commented out, since they fail to compile — allmaras / detail
  389. added Tensor-Vector dot-products: e.g. dot( VectorX, TensorMatrixQ ) — allmaras / detail
  390. clean up: MatrixS<D,D,MatrixQ> -> TensorMatrixQ — allmaras / detail
  391. needed additional #include's — allmaras / detail
  392. added ND ctor for BCs: BC( PDE, BCArgs ) — allmaras / detail
  393. added dist parameters to certain functions; added jacobianMasterState; code clean-up — allmaras / detail
  394. added skin friction / drag output for 1D incompressible NS channel flow — allmaras / detail
  395. added #if's to try different combinations of '(gradphi . K . nHat) betaBC^t rsdBC'; — allmaras / detail
  396. Updated FV-TPFA discretization to work for heterogeneous properties + some cleanup. — savithru / detail
  397. Added missing includes — savithru / detail
  398. removed dot-products supporting (K . nHat) operator in Robin_sansLG BCs, and reverted — allmaras / detail
  399. added IncompressibleNSLib to unit test builders — allmaras / detail
  400. latest sandbox tests for 1D fully developed channel flow — allmaras / detail
  401. Updated global contraints. Solve rotor speed at specified power. — galbramc / detail
  402. Compile fixes — galbramc / detail
  403. Add missing files — galbramc / detail
  404. added optional parameter to output_gnuplot for number of points per element (default remains 11) — allmaras / detail
  405. code cleanup for 1D NS/RANS — allmaras / detail
  406. solution function for 1D RANS: analytic law-of-the-wall for SA — allmaras / detail
  407. missed a pattern file — allmaras / detail
  408. missed a unit test file — allmaras / detail
  409. updated 1D RANS fully developed channel flow case to (a) work, (b) output useful data, — allmaras / detail
  410. Fix all output functionals to properly work in parallel — galbramc / detail
  411. name change for test suite to avoid link conflict for 'make unit' — allmaras / detail
  412. Fix compile error — galbramc / detail
  413. Compile fix — galbramc / detail
  414. Missing include — galbramc / detail
  415. More missing includes — galbramc / detail
  416. More missing includes — galbramc / detail
  417. reverted to depricated include directory for <boost/test/unit_test.hpp> — allmaras / detail
  418. More missing include fixes — galbramc / detail
  419. Upgrade to AFLR 10.8.7 — galbramc / detail
  420. Update AFLR libraries — galbramc / detail
  421. src/ — blsc / detail
  422. Updated BC::isValidState interface so mitState BCs can check if the boundary state generated is also valid — blsc / detail
  423. Removed file that didn't work out and shouldn't have been commited — blsc / detail
  424. Fix AFLR library order — galbramc / detail
  425. Formatting fixes — blsc / detail
  426. Missing instantiation and arguments flipped causing a unit test to fail — blsc / detail
  427. Fixes for AFLR4 and EGADS updates — galbramc / detail
  428. Fix for wake sheets — galbramc / detail
  429. Various small fixes — galbramc / detail
  430. Allow specified interior traces — galbramc / detail
  431. Compile fixes. Allow UnionJack to work in parallel — galbramc / detail
  432. Fix compile error — galbramc / detail
  433. removed 1D incompressible NS channel flow test case -- won't compile due to double — allmaras / detail
  434. Fixes for parallel specified interior traces. Added ParkMMS and EntropyProduction output. — galbramc / detail
  435. Forgot files — galbramc / detail
  436. Fixes for parallel interior traces — galbramc / detail
  437. Fix uninitialized data — galbramc / detail
  438. Fix intel warning — galbramc / detail
  439. Added new SPE10 cases for time-marching FV and DGBR2+AV. — savithru / detail
  440. Fix parallel DG DOF indexing for multiple cell groups — galbramc / detail
  441. fixes for jenkins squawks — allmaras / detail
  442. Fix EG zombies — galbramc / detail
  443. missing #include <vector> — allmaras / detail
  444. fixed warning for un-used typedef — allmaras / detail
  445. added isValidState with (x,time,nx,q) params for Dirichlet — allmaras / detail
  446. Hardening ReadSolution_PX to throw uniformly across MPI if rank 0 fails to load the file. Can now use try catch around restart blocks! — hcarson / detail
  447. fixed uninitialized variables in test — allmaras / detail
  448. removed redundant instantiation — allmaras / detail
  449. removed unneeded print statements and a typo — hcarson / detail
  450. Nightly fixes — galbramc / detail
  451. Various small fixes — galbramc / detail
  452. Fix to erroneous logic — hcarson / detail
  453. Make safe_at work for any container type, and reduce code duplication — hcarson / detail
  454. Nightly fixes — galbramc / detail
  455. More nightly fixes — galbramc / detail
  456. fixed nightly warning on unused variable — allmaras / detail
  457. Relax execution time — galbramc / detail
  458. Changed isValid to check: qbar + qp at cell quads, and qbar, qbar + qpL and qbar + qpR for interior traces. These are the only values used in flux evaluation — hcarson / detail

#265 (Jun 20, 2020, 2:49:59 AM)

  1. relocate QauxvInterpret forward declaration in prep for 3D stuff — shunz / detail
  2. Added basic stuff for 3D IBL — shunz / detail
  3. Minor cleanup — shunz / detail
  4. Initial pass on PDEIBL3D — shunz / detail
  5. Filled in 3D IBL closure with fully 3D components set to zero — shunz / detail
  6. Added BCNone for IBL3D — shunz / detail
  7. added a working version of sandbox case for IBL3D — shunz / detail
  8. Added a sheet grid of triangles in 3D for IBL3D — shunz / detail
  9. Added instantiation — shunz / detail
  10. Intermediate commit — shunz / detail
  11. Working on integrands for first 3D IBL case — shunz / detail
  12. More fixes to integrand classes for IBL3D — shunz / detail
  13. Fixed instantiations for IBL3D — shunz / detail
  14. Add explicit instantiations and fix typos in closure class — shunz / detail
  15. Initial version of local Cartesian basis construction for 3D IBL — shunz / detail
  16. Minor cleanup — shunz / detail
  17. Fix constuction of q1 and q2 vectors in case of stagnation flows — shunz / detail
  18. Add velocity gradient calculation in cell integrand of 3D IBL — shunz / detail
  19. Refactor and add a 2D stagnation flow test case — shunz / detail
  20. Add a 3D quad grid — shunz / detail
  21. Update cmake list for unit grid test — shunz / detail
  22. Fix typo in 3D quad sheet grid — shunz / detail
  23. fix bug in qauxv gradient calculation in 3D IBL cell integrand — shunz / detail
  24. Fix the scale and dimension of dissipation integral in 3D integral — shunz / detail
  25. fix a typo in thickness identity — shunz / detail
  26. Add more options to 3D IBL stagnation flow case, including quad grid, solution initialization, — shunz / detail
  27. one more bug fix in cell integrand for 3D IBL — shunz / detail
  28. Bugfix in calculation of trace unit normal vector for area cells in 3D — shunz / detail
  29. Add Nishida's crossflow closure.  Add pyrite check of stagnation flow case for 3D IBL.  Minor addition for debugging in PDEIBL3D — shunz / detail
  30. fix dependents of refactoring of GetSolnDofCell_IBL — shunz / detail
  31. Add a 3D flat plate source panel method but haven't tested yet — shunz / detail
  32. intermediate commit: minor clenaup and add guards. — shunz / detail
  33. intermediate commit: working on 3D coupled IBL for torpedo cass — shunz / detail
  34. add 3x3 equation system — shunz / detail
  35. typo fix. add partial instantiations for system 3x3 vector and matrix types — shunz / detail
  36. add linesearch data type for 3x3 equation system — shunz / detail
  37. add missing include — shunz / detail
  38. intermediate commit: fix many compiling errors in the way of running torpedo case for IBL3D. switching computer to continue the work... — shunz / detail
  39. refactor projection to Qauxi — shunz / detail
  40. add interior trace integrand for projection onto Qauxi — shunz / detail
  41. minor fix — shunz / detail
  42. add instantiations for IBL3D torpedo case — shunz / detail
  43. add instantiations for coupled IBL3D — shunz / detail
  44. remove unnecessary assert — shunz / detail
  45. fix for coupled IBL case to compile and run — shunz / detail
  46. fix uninitialized dummy DOFs — shunz / detail
  47. fix setDOFFrom in Qauxv 3D (missing q_y previously) — shunz / detail
  48. Coupled 3D IBL case converged on some simple variants of the torpedo case: linear and mildly nonlinear radial velocity distribution with attached laminar BLs — shunz / detail
  49. Tried triangle grid as well: fine on radially linear velocity distribution but couldn't converge on a more nonlinear case — shunz / detail
  50. cleaned up unused stuff — shunz / detail
  51. refactor SetIBLoutputCellGroup to accommodate both 3D and 2D IBL — shunz / detail
  52. remove outdated include — shunz / detail
  53. more refactoring of SetIBLoutputCellGroup for 3D IBL.  working progress.  switching computer — shunz / detail
  54. intermediate commit. switching computer. — shunz / detail
  55. enable tecplot output for 3D IBL — shunz / detail
  56. added PyDict options for Verbose and writeMarketMatrix for UMFPACK — allmaras / detail
  57. add full-state BC for IBL3D with corresponding boundary trace integrand.  verified on an uncoupled Blasius case — shunz / detail
  58. add a coupled IBL3D Blasius case — shunz / detail
  59. implement PTC for coupled IBL 3x3 system — shunz / detail
  60. add commented-out stuff for turning off laminar amplification and lag equations in IBL3D — shunz / detail
  61. fix typo in commented-out stuff — shunz / detail
  62. enable rotated mesh for IBL3D torpedo case — shunz / detail
  63. set up a torpedo with grid aligned with xy axes.  turned off laminar amplification and lag equations [need to be brought back after testing purely laminar BLs] — shunz / detail
  64. minor change to test case — shunz / detail
  65. minor refactoring on Blasius inflow BC params — shunz / detail
  66. rename test cases — shunz / detail
  67. speed up panel-related jacobian calculation using cached influence matrix in place of surrealized qauxifld — shunz / detail
  68. add jacobian timing for refactoring purpose — shunz / detail
  69. add similar (to DBL3) Falkner-Skan inflow bc for IBL3D with non-constant inflow state. set up a tornado case with rotated xy grid to compare with DBL3 — shunz / detail
  70. minor refactoring of test cases — shunz / detail
  71. remove trivial zero z velocity component to speed up panel method — shunz / detail
  72. minor refactoring — shunz / detail
  73. typo fix — shunz / detail
  74. precompute inviscid velocity for panel, which resulted in O(10) speedup in related residual calculation. fix DOF indexing in residual/jacobian precomputation — shunz / detail
  75. define macro to comment off some lines for timing/refactoring — shunz / detail
  76. minor comments — shunz / detail
  77. add ping test for coupled IBL in 3x3 block system — shunz / detail
  78. attempt to mirror tets in XField3D_Box_Tet_X1_WakeCut — allmaras / detail
  79. reverted to original prism-split coding; remainder of code is hard-coded for the — allmaras / detail
  80. fix typo in Cf2 closure, although it didn't change the torpedo case results much — shunz / detail
  81. Fix dot for VectorBlock — galbramc / detail
  82. added PyDict control of wake & Kutta Nitsche parameters — allmaras / detail
  83. added PyDict solve check option to UMFPACK; currently commented out actual check — allmaras / detail
  84. Fixes for checking the UMFPACK solve — galbramc / detail
  85. add a wall term to dissipation relation of Nishida's closure, although it didn't affect things much — shunz / detail
  86. add a test case of fx67-k-170 airfoil — shunz / detail
  87. minor edit to output filenames at convergence failures — shunz / detail
  88. resolve merge conflict — shunz / detail
  89. changed default flux of IBL to LF flux — shunz / detail
  90. add a test case for drag polar — shunz / detail
  91. ran drag polar cases — shunz / detail
  92. refactored reference speed in transition model — shunz / detail
  93. typo fix — shunz / detail
  94. rename working directory — shunz / detail
  95. refator characteristic speed for PTC — shunz / detail
  96. refator characteristic speed for PTC — shunz / detail
  97. Add unit tests demonstrating that the step matrix calculation is stable to scaling — hcarson / detail
  98. update pyrite files — shunz / detail
  99. refactor 3D IBL closure API to allow for alternative closure models — shunz / detail
  100. save 3D closure relations in a separate header — shunz / detail
  101. add neural net closure for 3D IBL — shunz / detail
  102. run drag polar on finer grids — shunz / detail
  103. switch to run on acdl desktop — shunz / detail
  104. fix memory leak warning caused by accessing index -1 — shunz / detail
  105. minor update — shunz / detail
  106. mucking with PETSc for IBL3 — shunz / detail
  107. instantiate MKL_PARDISO solver for matrix block 3x3 — shunz / detail
  108. tried MKL_PARDISO solver for IBL3 — shunz / detail
  109. Adding test that Explicitly calculating the step from the metric directly is not unstable. Cases in 2D and 3D, showing stability to an AR of 2^10 in 3D, and 2^64 in 2D. — hcarson / detail
  110. minor typo fix — shunz / detail
  111. fix formatting — shunz / detail
  112. add mitLG BC for IBL3 — shunz / detail
  113. minor refactoring — shunz / detail
  114. switch to the same input parameters as DBL3 — shunz / detail
  115. add LF flux to IBL3 — shunz / detail
  116. Changes to ErrorModel to allow for the new exact nodal metric calculation — hcarson / detail
  117. Changes to ErrorModel to allow for the new exact nodal metric calculation — hcarson / detail
  118. pre merge add.... wth? — hcarson / detail
  119. add Dirichlet mitLG inflow BC to a Blasius flow test case — shunz / detail
  120. Jenkins fix — hcarson / detail
  121. reverting to the develop branch of ErrorModel — hcarson / detail
  122. fixes to case — hcarson / detail
  123. fixes to case — hcarson / detail
  124. intermediate commit: added 4-equation neural net closure model.  working on 4-equation IBL3D pde class — shunz / detail
  125. remove extraneous tamplate keyword — shunz / detail
  126. Various changes for arthur: Commented the adjoint_wo_p things from SolverInterface_VMSD_BR2, reducing the memory reqs. Made the Deltawing adapts more uniform and fit with the plan. Added the Solve case for the VMSD delta wing. — hcarson / detail
  127. added soruce terms for the lateral curvature equation of IBL3 — shunz / detail
  128. removed re-definition — shunz / detail
  129. refactored and added PDE and BC for four-equation 3D IBL class.  added a starting point for torpedo case — shunz / detail
  130. separated classes of 3D IBL and IBLFourEqn — shunz / detail
  131. generalized templates in IBL3-related integrands — shunz / detail
  132. added instantiations for four-equation 3D IBL — shunz / detail
  133. fixed instantiation typo — shunz / detail
  134. turned on verbose linesearch printout — shunz / detail
  135. added a visous-only Blasius case for 4-equation 3D IBL.  added a missing include — shunz / detail
  136. refactored reference coordinate gradient for speedup.  add/edit comments for clarity — shunz / detail
  137. typo fix: gradqe*E_qesq.  minor edits — shunz / detail
  138. turned off printout in unit testing — shunz / detail
  139. cosmetic changes — shunz / detail
  140. refactored neural net closure models: H22, Hd1, Hc2 — shunz / detail
  141. added output for four-equation 3D IBL — shunz / detail
  142. fixed auxi equation (wall transpiration): previous mass flux missed crossflow component — shunz / detail
  143. previous fix to wall transpiration (auxi equation) didn't fix.  it is now fixed.  added unit test — shunz / detail
  144. minor tweak — shunz / detail
  145. minor cleanup — shunz / detail
  146. add velocity gradient output to IBL — shunz / detail
  147. add instantiation — shunz / detail
  148. added IBL3 closure relations in the form of analytic formulae — shunz / detail
  149. refactored neural net closure implementation — shunz / detail
  150. added a set of IBL3 closure models based on analytic formulae — shunz / detail
  151. restored four-equation neural net closure to its original working state — shunz / detail
  152. switch to using 4-equation IBL3 closure based on analytic formulae.  results are similar or slightly better than neural net closure — shunz / detail
  153. fixed a typo (which fortunately wasn't used yet).  added exception throws — shunz / detail
  154. fixed include filename — shunz / detail
  155. removed redundant exceptions — shunz / detail
  156. refactored four-eqn IBL3 curve-fit closure — shunz / detail
  157. conformed to vera check: should not use "using namespace" in header files — shunz / detail
  158. fixed unit tests for after API refactoring — shunz / detail
  159. fixed unit tests for the  previous API refactoring — shunz / detail
  160. fixed ping tests: finite difference step size — shunz / detail
  161. added ping test for four-eqn IBL3 — shunz / detail
  162. added Blasius flow test case for four-eqn IBL3D. some cleanup — shunz / detail
  163. added include — shunz / detail
  164. added includes — shunz / detail
  165. checked four-eqn IBL3D on Blasius case and stagnation radial flow — shunz / detail
  166. added a stagnation flow toy case.  mucked with IBL3 for torpedo case — shunz / detail
  167. fixed toy case to keep up with API refactoring — shunz / detail
  168. added missing include related to MPI — shunz / detail
  169. suppresed file dump in system test — shunz / detail
  170. added assertions — shunz / detail
  171. add some derivates to the IBL3 output — shunz / detail
  172. relaxed pyrite tolerance — shunz / detail
  173. relaxed pyrite tolerance for intel compiler.  speed up ping test to avoid time-out — shunz / detail
  174. renamed output — shunz / detail
  175. added and refactored IBL3 output — shunz / detail
  176. make verbose_ if-tests consistent throughout — allmaras / detail
  177. fixed screen dump for checkSolve_ when residuals above tolerance — allmaras / detail
  178. added option to dump solution at each Newton iteration — allmaras / detail
  179. added pressure gradient for space-time — allmaras / detail
  180. added instantiations, etc, needed for log(p) variables with look-up porosity/permeability tables — allmaras / detail
  181. added grid-Laplacian artificial viscosity for pressure; currently hard-coded diffusion coefficient — allmaras / detail
  182. trying to fix gnu9 compiler warning — shunz / detail
  183. added "#include <utilities>" for std::move; added unit test for VectorBlock_3 — allmaras / detail
  184. fixed vera line-length squawk — allmaras / detail
  185. fixed vera line-length squawk — allmaras / detail
  186. fixed vera line-length squawk — allmaras / detail
  187. add a new curve fit model based on low-dissipative DBL3 data — shunz / detail
  188. allow for uncoupled/viscou-only IBL3 solution by tweaking the panel method — shunz / detail
  189. fixed VectorBlock_3 unit test; made ::m() and ::n() static, so 2, 3, and 4 are all consistent — allmaras / detail
  190. forgot to save changes in the last commit... — shunz / detail
  191. relaxed Jenkins timeout threshold for some large ping tests — shunz / detail
  192. minor tweak — shunz / detail
  193. speed up ping test by turning off some redundant sub-block checks — shunz / detail
  194. fix cppcheck error — shunz / detail
  195. speed up ping test by turning off tests on some sub-blocks of the jacobian — shunz / detail
  196. added directory creation for output files — allmaras / detail
  197. Don't use python2 with jenkins — galbramc / detail
  198. removed old version of adjoint-compatible potential solver for Hershey wing — allmaras / detail
  199. temporarily disabled tests involving artificial viscosity fluxes if USE_PRESSURE_AV defined — allmaras / detail
  200. make VectorBlock test-suite names unique (so make unit_build works) — allmaras / detail
  201. added unit tests for circulation integrations — allmaras / detail
  202. added circulation integrations for lift & roll as functional outputs — allmaras / detail
  203. Add Q3 and Q4 elements to Gmsh IO — galbramc / detail
  204. clean-up of circulation-base functional code/test; added drag but #ifdef'ed out, as it's not complete — allmaras / detail
  205. Fix finding macOS Accelerate BLAS — galbramc / detail
  206. cppcheck fixes for nightly — allmaras / detail
  207. moving back to develop — hcarson / detail
  208. add empty definition to fix undefined reference in weekly test — shunz / detail
  209. add empty definition to fix undefined reference in weekly test — shunz / detail
  210. vera fix — hcarson / detail
  211. removing unneeded test — hcarson / detail
  212. fixing unused var — hcarson / detail
  213. Update for latest version of refine — galbramc / detail
  214. missing space — hcarson / detail
  215. Added vpr11@mit.edu to DeveloperEmailAddresses — vpr11 / detail

#264 (Jun 13, 2020, 1:52:07 AM)

  1. relocate QauxvInterpret forward declaration in prep for 3D stuff — shunz / detail
  2. Added basic stuff for 3D IBL — shunz / detail
  3. Minor cleanup — shunz / detail
  4. Initial pass on PDEIBL3D — shunz / detail
  5. Filled in 3D IBL closure with fully 3D components set to zero — shunz / detail
  6. Added BCNone for IBL3D — shunz / detail
  7. added a working version of sandbox case for IBL3D — shunz / detail
  8. Added a sheet grid of triangles in 3D for IBL3D — shunz / detail
  9. Added instantiation — shunz / detail
  10. Intermediate commit — shunz / detail
  11. Working on integrands for first 3D IBL case — shunz / detail
  12. More fixes to integrand classes for IBL3D — shunz / detail
  13. Fixed instantiations for IBL3D — shunz / detail
  14. Add explicit instantiations and fix typos in closure class — shunz / detail
  15. Initial version of local Cartesian basis construction for 3D IBL — shunz / detail
  16. Minor cleanup — shunz / detail
  17. Fix constuction of q1 and q2 vectors in case of stagnation flows — shunz / detail
  18. Add velocity gradient calculation in cell integrand of 3D IBL — shunz / detail
  19. Refactor and add a 2D stagnation flow test case — shunz / detail
  20. Add a 3D quad grid — shunz / detail
  21. Update cmake list for unit grid test — shunz / detail
  22. Fix typo in 3D quad sheet grid — shunz / detail
  23. fix bug in qauxv gradient calculation in 3D IBL cell integrand — shunz / detail
  24. Fix the scale and dimension of dissipation integral in 3D integral — shunz / detail
  25. fix a typo in thickness identity — shunz / detail
  26. Add more options to 3D IBL stagnation flow case, including quad grid, solution initialization, — shunz / detail
  27. one more bug fix in cell integrand for 3D IBL — shunz / detail
  28. Bugfix in calculation of trace unit normal vector for area cells in 3D — shunz / detail
  29. Add Nishida's crossflow closure.  Add pyrite check of stagnation flow case for 3D IBL.  Minor addition for debugging in PDEIBL3D — shunz / detail
  30. fix dependents of refactoring of GetSolnDofCell_IBL — shunz / detail
  31. Add a 3D flat plate source panel method but haven't tested yet — shunz / detail
  32. intermediate commit: minor clenaup and add guards. — shunz / detail
  33. intermediate commit: working on 3D coupled IBL for torpedo cass — shunz / detail
  34. add 3x3 equation system — shunz / detail
  35. typo fix. add partial instantiations for system 3x3 vector and matrix types — shunz / detail
  36. add linesearch data type for 3x3 equation system — shunz / detail
  37. add missing include — shunz / detail
  38. intermediate commit: fix many compiling errors in the way of running torpedo case for IBL3D. switching computer to continue the work... — shunz / detail
  39. refactor projection to Qauxi — shunz / detail
  40. add interior trace integrand for projection onto Qauxi — shunz / detail
  41. minor fix — shunz / detail
  42. add instantiations for IBL3D torpedo case — shunz / detail
  43. add instantiations for coupled IBL3D — shunz / detail
  44. remove unnecessary assert — shunz / detail
  45. fix for coupled IBL case to compile and run — shunz / detail
  46. fix uninitialized dummy DOFs — shunz / detail
  47. fix setDOFFrom in Qauxv 3D (missing q_y previously) — shunz / detail
  48. Coupled 3D IBL case converged on some simple variants of the torpedo case: linear and mildly nonlinear radial velocity distribution with attached laminar BLs — shunz / detail
  49. Tried triangle grid as well: fine on radially linear velocity distribution but couldn't converge on a more nonlinear case — shunz / detail
  50. cleaned up unused stuff — shunz / detail
  51. refactor SetIBLoutputCellGroup to accommodate both 3D and 2D IBL — shunz / detail
  52. remove outdated include — shunz / detail
  53. more refactoring of SetIBLoutputCellGroup for 3D IBL.  working progress.  switching computer — shunz / detail
  54. intermediate commit. switching computer. — shunz / detail
  55. enable tecplot output for 3D IBL — shunz / detail
  56. add full-state BC for IBL3D with corresponding boundary trace integrand.  verified on an uncoupled Blasius case — shunz / detail
  57. add a coupled IBL3D Blasius case — shunz / detail
  58. implement PTC for coupled IBL 3x3 system — shunz / detail
  59. add commented-out stuff for turning off laminar amplification and lag equations in IBL3D — shunz / detail
  60. fix typo in commented-out stuff — shunz / detail
  61. enable rotated mesh for IBL3D torpedo case — shunz / detail
  62. set up a torpedo with grid aligned with xy axes.  turned off laminar amplification and lag equations [need to be brought back after testing purely laminar BLs] — shunz / detail
  63. minor change to test case — shunz / detail
  64. minor refactoring on Blasius inflow BC params — shunz / detail
  65. rename test cases — shunz / detail
  66. speed up panel-related jacobian calculation using cached influence matrix in place of surrealized qauxifld — shunz / detail
  67. add jacobian timing for refactoring purpose — shunz / detail
  68. add similar (to DBL3) Falkner-Skan inflow bc for IBL3D with non-constant inflow state. set up a tornado case with rotated xy grid to compare with DBL3 — shunz / detail
  69. minor refactoring of test cases — shunz / detail
  70. remove trivial zero z velocity component to speed up panel method — shunz / detail
  71. minor refactoring — shunz / detail
  72. typo fix — shunz / detail
  73. precompute inviscid velocity for panel, which resulted in O(10) speedup in related residual calculation. fix DOF indexing in residual/jacobian precomputation — shunz / detail
  74. define macro to comment off some lines for timing/refactoring — shunz / detail
  75. minor comments — shunz / detail
  76. add ping test for coupled IBL in 3x3 block system — shunz / detail
  77. fix typo in Cf2 closure, although it didn't change the torpedo case results much — shunz / detail
  78. add a wall term to dissipation relation of Nishida's closure, although it didn't affect things much — shunz / detail
  79. add a test case of fx67-k-170 airfoil — shunz / detail
  80. minor edit to output filenames at convergence failures — shunz / detail
  81. resolve merge conflict — shunz / detail
  82. changed default flux of IBL to LF flux — shunz / detail
  83. add a test case for drag polar — shunz / detail
  84. ran drag polar cases — shunz / detail
  85. refactored reference speed in transition model — shunz / detail
  86. typo fix — shunz / detail
  87. rename working directory — shunz / detail
  88. refator characteristic speed for PTC — shunz / detail
  89. refator characteristic speed for PTC — shunz / detail
  90. update pyrite files — shunz / detail
  91. refactor 3D IBL closure API to allow for alternative closure models — shunz / detail
  92. save 3D closure relations in a separate header — shunz / detail
  93. add neural net closure for 3D IBL — shunz / detail
  94. run drag polar on finer grids — shunz / detail
  95. switch to run on acdl desktop — shunz / detail
  96. fix memory leak warning caused by accessing index -1 — shunz / detail
  97. minor update — shunz / detail
  98. mucking with PETSc for IBL3 — shunz / detail
  99. instantiate MKL_PARDISO solver for matrix block 3x3 — shunz / detail
  100. tried MKL_PARDISO solver for IBL3 — shunz / detail
  101. minor typo fix — shunz / detail
  102. fix formatting — shunz / detail
  103. add mitLG BC for IBL3 — shunz / detail
  104. minor refactoring — shunz / detail
  105. switch to the same input parameters as DBL3 — shunz / detail
  106. add LF flux to IBL3 — shunz / detail
  107. add Dirichlet mitLG inflow BC to a Blasius flow test case — shunz / detail
  108. intermediate commit: added 4-equation neural net closure model.  working on 4-equation IBL3D pde class — shunz / detail
  109. remove extraneous tamplate keyword — shunz / detail
  110. added soruce terms for the lateral curvature equation of IBL3 — shunz / detail
  111. removed re-definition — shunz / detail
  112. refactored and added PDE and BC for four-equation 3D IBL class.  added a starting point for torpedo case — shunz / detail
  113. separated classes of 3D IBL and IBLFourEqn — shunz / detail
  114. generalized templates in IBL3-related integrands — shunz / detail
  115. added instantiations for four-equation 3D IBL — shunz / detail
  116. fixed instantiation typo — shunz / detail
  117. turned on verbose linesearch printout — shunz / detail
  118. added a visous-only Blasius case for 4-equation 3D IBL.  added a missing include — shunz / detail
  119. refactored reference coordinate gradient for speedup.  add/edit comments for clarity — shunz / detail
  120. typo fix: gradqe*E_qesq.  minor edits — shunz / detail
  121. turned off printout in unit testing — shunz / detail
  122. cosmetic changes — shunz / detail
  123. refactored neural net closure models: H22, Hd1, Hc2 — shunz / detail
  124. added output for four-equation 3D IBL — shunz / detail
  125. fixed auxi equation (wall transpiration): previous mass flux missed crossflow component — shunz / detail
  126. previous fix to wall transpiration (auxi equation) didn't fix.  it is now fixed.  added unit test — shunz / detail
  127. minor tweak — shunz / detail
  128. minor cleanup — shunz / detail
  129. add velocity gradient output to IBL — shunz / detail
  130. add instantiation — shunz / detail
  131. added IBL3 closure relations in the form of analytic formulae — shunz / detail
  132. refactored neural net closure implementation — shunz / detail
  133. added a set of IBL3 closure models based on analytic formulae — shunz / detail
  134. restored four-equation neural net closure to its original working state — shunz / detail
  135. switch to using 4-equation IBL3 closure based on analytic formulae.  results are similar or slightly better than neural net closure — shunz / detail
  136. fixed a typo (which fortunately wasn't used yet).  added exception throws — shunz / detail
  137. fixed include filename — shunz / detail
  138. removed redundant exceptions — shunz / detail
  139. refactored four-eqn IBL3 curve-fit closure — shunz / detail
  140. conformed to vera check: should not use "using namespace" in header files — shunz / detail
  141. fixed unit tests for after API refactoring — shunz / detail
  142. fixed unit tests for the  previous API refactoring — shunz / detail
  143. fixed ping tests: finite difference step size — shunz / detail
  144. added ping test for four-eqn IBL3 — shunz / detail
  145. added Blasius flow test case for four-eqn IBL3D. some cleanup — shunz / detail
  146. added include — shunz / detail
  147. added includes — shunz / detail
  148. checked four-eqn IBL3D on Blasius case and stagnation radial flow — shunz / detail
  149. added a stagnation flow toy case.  mucked with IBL3 for torpedo case — shunz / detail
  150. fixed toy case to keep up with API refactoring — shunz / detail
  151. added missing include related to MPI — shunz / detail
  152. suppresed file dump in system test — shunz / detail
  153. added assertions — shunz / detail
  154. add some derivates to the IBL3 output — shunz / detail
  155. relaxed pyrite tolerance — shunz / detail
  156. relaxed pyrite tolerance for intel compiler.  speed up ping test to avoid time-out — shunz / detail
  157. renamed output — shunz / detail
  158. added and refactored IBL3 output — shunz / detail
  159. trying to fix gnu9 compiler warning — shunz / detail
  160. add a new curve fit model based on low-dissipative DBL3 data — shunz / detail
  161. allow for uncoupled/viscou-only IBL3 solution by tweaking the panel method — shunz / detail
  162. forgot to save changes in the last commit... — shunz / detail
  163. relaxed Jenkins timeout threshold for some large ping tests — shunz / detail
  164. minor tweak — shunz / detail
  165. speed up ping test by turning off some redundant sub-block checks — shunz / detail
  166. fix cppcheck error — shunz / detail
  167. speed up ping test by turning off tests on some sub-blocks of the jacobian — shunz / detail
  168. Don't use python2 with jenkins — galbramc / detail

#263 (May 30, 2020, 2:08:52 AM)

  1. instantiation of vectors for 1D Euler — ursachi / detail
  2. added williams sparse quadrature, and tests, and everything seems to be working! — cfrontin / detail
  3. added some stuff — cfrontin / detail
  4. quadrature update. — cfrontin / detail
  5. 1D+T AD adapt case added. — cfrontin / detail
  6. need to fix boundaryoutput for vmsd case im workin on. — cfrontin / detail
  7. updated quadrature and quad testing and also unit tests. — cfrontin / detail
  8. corrected merge error — cfrontin / detail
  9. jenkins fixes — cfrontin / detail
  10. jenkins fixes — cfrontin / detail
  11. Various small fixes for Windoze — galbramc / detail
  12. Fix last commit — galbramc / detail
  13. slight change to quad test, nightly fix. — cfrontin / detail
  14. update, turn off quadrature sandbox for jenkins — cfrontin / detail
  15. update, turn off quadrature sandbox for jenkins 2nd try — cfrontin / detail
  16. Added WriteMesh_ugrid. Add 2D ugrid read/write — galbramc / detail
  17. Fix compile error — galbramc / detail
  18. Properly cleanup ugrid testing files — galbramc / detail
  19. Fix warning — galbramc / detail
  20. Nightly fixes — galbramc / detail
  21. Upgrade AFLR version — galbramc / detail
  22. added 2D moment, pressure drag, and viscous drag outputs — ursachi / detail
  23. added ability to write qpfld restart file — ursachi / detail
  24. created Q1 version of multi-element test case — ursachi / detail
  25. fixes for refine test case — ursachi / detail
  26. slight change to test case — ursachi / detail
  27. 2D VMSDBR2 + RANSSA + AV instantiations — ursachi / detail
  28. missing instantiations and functions for RANSSA + AV — ursachi / detail
  29. Q1 AV test case — ursachi / detail
  30. initial mesh characteristics stuff — ursachi / detail
  31. element counter/finder, for 2D — ursachi / detail
  32. cleaned up file — ursachi / detail
  33. Revert "initial mesh characteristics stuff" — ursachi / detail
  34. added some derived surface quantities — ursachi / detail
  35. fixed formatting issues — ursachi / detail
  36. missed some trailing spaces — ursachi / detail
  37. removed duplicate instantiation — ursachi / detail
  38. fixed a warning — ursachi / detail
  39. Nightly fix — galbramc / detail
  40. Fix to work with Boost 1.73. Replace 'unsinted long' with 'uintptr_t' in triangle — galbramc / detail
  41. fixed another warning — ursachi / detail
  42. Fix formatting — galbramc / detail
  43. Fix linearization bug in VMSDBR2 — galbramc / detail

#262 (May 23, 2020, 1:52:07 AM)

  1. instantiation of vectors for 1D Euler — ursachi / detail
  2. added williams sparse quadrature, and tests, and everything seems to be working! — cfrontin / detail
  3. added some stuff — cfrontin / detail
  4. quadrature update. — cfrontin / detail
  5. 1D+T AD adapt case added. — cfrontin / detail
  6. need to fix boundaryoutput for vmsd case im workin on. — cfrontin / detail
  7. updated quadrature and quad testing and also unit tests. — cfrontin / detail
  8. corrected merge error — cfrontin / detail
  9. jenkins fixes — cfrontin / detail
  10. jenkins fixes — cfrontin / detail
  11. Various small fixes for Windoze — galbramc / detail
  12. Fix last commit — galbramc / detail
  13. slight change to quad test, nightly fix. — cfrontin / detail
  14. update, turn off quadrature sandbox for jenkins — cfrontin / detail
  15. update, turn off quadrature sandbox for jenkins 2nd try — cfrontin / detail
  16. Added WriteMesh_ugrid. Add 2D ugrid read/write — galbramc / detail
  17. Fix compile error — galbramc / detail
  18. Properly cleanup ugrid testing files — galbramc / detail
  19. Fix warning — galbramc / detail
  20. Nightly fixes — galbramc / detail
  21. Upgrade AFLR version — galbramc / detail
  22. added 2D moment, pressure drag, and viscous drag outputs — ursachi / detail
  23. added ability to write qpfld restart file — ursachi / detail
  24. created Q1 version of multi-element test case — ursachi / detail
  25. fixes for refine test case — ursachi / detail
  26. slight change to test case — ursachi / detail
  27. 2D VMSDBR2 + RANSSA + AV instantiations — ursachi / detail
  28. missing instantiations and functions for RANSSA + AV — ursachi / detail
  29. Q1 AV test case — ursachi / detail
  30. initial mesh characteristics stuff — ursachi / detail
  31. element counter/finder, for 2D — ursachi / detail
  32. cleaned up file — ursachi / detail
  33. Revert "initial mesh characteristics stuff" — ursachi / detail
  34. added some derived surface quantities — ursachi / detail
  35. fixed formatting issues — ursachi / detail
  36. missed some trailing spaces — ursachi / detail
  37. removed duplicate instantiation — ursachi / detail
  38. fixed a warning — ursachi / detail
  39. Nightly fix — galbramc / detail
  40. Fix to work with Boost 1.73. Replace 'unsinted long' with 'uintptr_t' in triangle — galbramc / detail
  41. fixed another warning — ursachi / detail
  42. Fix formatting — galbramc / detail

#261 (Apr 17, 2020, 10:14:29 AM)

  1. Added variable interpreter for primary unknowns = {delta*, theta, G} — shunz / detail
  2. Refactored IBL profile type identifier — shunz / detail
  3. Added unit tests to VarInterpret — shunz / detail
  4. Fixed unit test — shunz / detail
  5. Added a new class for calculating thicknesses and coeffcients, along with unit tests. — shunz / detail
  6. Typo fixes — shunz / detail
  7. Refactored PDEIBLUniField to use genealized thicknesses/coeffcients calculation routines.  Verified uncoupled IBL run with airfoil only — shunz / detail
  8. Refactoring to get coupled IBLUniField to work without transition.  Caveat: pyrite check is fine with delta & A variables, but mismatches G (maybe numerical precision issue? to be eamined) — shunz / detail
  9. Cleaned up obsolete stuff — shunz / detail
  10. Cleanup — shunz / detail
  11. Renaming/cleanup — shunz / detail
  12. Preliminary implementation of correlation closure — shunz / detail
  13. Minor refactoring — shunz / detail
  14. First run of correlation-closure IBL on an uncoupled airfoil-only case, compared reasonably well with profile-closure results — shunz / detail
  15. minor edit — shunz / detail
  16. Added turbulent closure from MSES paper.  Ran coupled IBL on airfoil+wake configuration, comparing reasonably well with IBL based on profile closures — shunz / detail
  17. Distinguished H from Hk (kinematic). — shunz / detail
  18. Reduced code repetition — shunz / detail
  19. Added some XFOIL closures — shunz / detail
  20. Added more XFOIL closures — shunz / detail
  21. Typo fixes — shunz / detail
  22. Refactored Uslip calculation — shunz / detail
  23. Fixed a typo in xfoil laminar BL closure — shunz / detail
  24. Added pyrite check for XFOIL laminar BL closure — shunz / detail
  25. Recovered the correct double dissipation for wake.  Added pyrite files — shunz / detail
  26. Added output dumping functions for correlation-closure IBL — shunz / detail
  27. Refactored output function and added a utility function — shunz / detail
  28. Added XFOIL amplification growth rate closure, which is almost identical to IBL — shunz / detail
  29. Modified lag equation and CDiss closure a bit. — shunz / detail
  30. With modified lag equation, laminarBL+turbulentWake results matches XFOIL very closely — shunz / detail
  31. Added captured transition test case with pyrite file for correlation-based IBL — shunz / detail
  32. Fixed an innocuous bug — shunz / detail
  33. Re-enabled LF flux — shunz / detail
  34. Added machinery for loading up IBL solution from input file — shunz / detail
  35. Make LF flux a default for IBL — shunz / detail
  36. Refactored blended intermittency calculation for correlation-based closure — shunz / detail
  37. Do no apply blending for wake — shunz / detail
  38. Switched to generalized thickness/coeffcient calculation for duplicate-field IBL as well.  Verified uncoupled airfoil case with full upwind — shunz / detail
  39. Bug fix — shunz / detail
  40. Verified coupled case with laminarBL+turbulentWake — shunz / detail
  41. Minor refactoring — shunz / detail
  42. minor cleanup — shunz / detail
  43. Added instantiation and fixed transition test cases — shunz / detail
  44. Added a missing method — shunz / detail
  45. Added a pyrite check for NACA0012 case (with flow separation) — shunz / detail
  46. Added a different set of initial solution.  Allowed for laminar BL to turn turbulent during transient state — shunz / detail
  47. Added new IBL variable type — shunz / detail
  48. Added unit tests and fixed bugs — shunz / detail
  49. Generalized dummy equations in duplicate-field IBL pde class — shunz / detail
  50. Follow-up fixes for test cases affected by earlier commits — shunz / detail
  51. Refactored solution initialization — shunz / detail
  52. Enabled correlation-based two-field IBL formulation.  Added test case of coupled IBL with lamiBL+turbWake and corresponding pyrite file. — shunz / detail
  53. Refactored updateFraction in PDEIBL and also fixed the sign in solution update — shunz / detail
  54. Generalized cut-cell machinery to handle two different sets of IBL primary unknowns — shunz / detail
  55. Added pyrite check — shunz / detail
  56. Added comments — shunz / detail
  57. Minor refactoring.  Added missing initial solution file — shunz / detail
  58. Intermediate commit — shunz / detail
  59. Cleaned up test cases — shunz / detail
  60. Refactored updateFraction — shunz / detail
  61. Added a pyrite check — shunz / detail
  62. Relaxed tolerance — shunz / detail
  63. Refactoring updateFraction.  Added an expedient guard against too small Hk — shunz / detail
  64. Added underrelaxation — shunz / detail
  65. Added underrelaxation-related stuff — shunz / detail
  66. Cosmetic edtis — shunz / detail
  67. Verified pyrite check for fitted-transition IBL on NACA0012 Re=1e5 massively separated laminar BL — shunz / detail
  68. Added Cf replacement for turbulent BL with too small Retheta — shunz / detail
  69. Added a pyrite file — shunz / detail
  70. Added a pyrite file — shunz / detail
  71. BC refactoring and unit test fix — shunz / detail
  72. Refactored BC and added unit tests — shunz / detail
  73. Improved coverage by removing redundant safety guards — shunz / detail
  74. Just renaming — shunz / detail
  75. Refactoring and unit testing — shunz / detail
  76. Fixed a bug in Cf correlation.  Added unit test — shunz / detail
  77. Type fix — shunz / detail
  78. Unit tested correlations from XFOIL. — shunz / detail
  79. Refactored amplification growth correlation calculation for speedup --> changed the floating-point arithmetic a bit  Added unit tests. — shunz / detail
  80. added comments — shunz / detail
  81. Cleanup — shunz / detail
  82. Cleanup — shunz / detail
  83. Dump additional output files for examination — shunz / detail
  84. Unit test fixes — shunz / detail
  85. More unit test fixes — shunz / detail
  86. Unit test fix — shunz / detail
  87. Refactored blended intermittency calculation and added unit tests — shunz / detail
  88. Refactored updateFraction and added unit tests — shunz / detail
  89. minor fixes — shunz / detail
  90. matching old system pyrite test: coupled IBLUniField profile-closure lamiBL+turbWake — shunz / detail
  91. Changed initial solution guess — shunz / detail
  92. Bug fix.  Equality operator is sensitive to type: std::string vs its reference. — shunz / detail
  93. Minor refactoring — shunz / detail
  94. Added comments — shunz / detail
  95. Refactored unit tests — shunz / detail
  96. Refactored source terms and added unit tests for PDEIBL2D — shunz / detail
  97. Refactored ctau_{turb,init}.  Unit tested turbulent sub-cell source term for amplification eqn in cut-cell transition formulation — shunz / detail
  98. Fix for vera formatting check.  Also a minor refactoring — shunz / detail
  99. Minor refactoring — shunz / detail
  100. Refactored ctau_{turb,init} fitting calculation — shunz / detail
  101. Forgot to save  this in the last commit... — shunz / detail
  102. Unit-tested upwind advective flux in two-fIeld IBL pde class — shunz / detail
  103. Minor commenting — shunz / detail
  104. Minor refactoring — shunz / detail
  105. minor refactoring — shunz / detail
  106. Refactored dummy matching equations for fitted transition — shunz / detail
  107. Forgot to commit this in the last pass — shunz / detail
  108. Modified artificial amplification source term in fully turbulent elements.  Pluse other minor refactoring — shunz / detail
  109. Make sure scales are non-negative — shunz / detail
  110. Enabled G=ln(ctau^0.5) as a primary unknown in place of ctau.  It helps with nonlinear solution. — shunz / detail
  111. Fixed unit tests — shunz / detail
  112. Dumping matching variables for transition — shunz / detail
  113. Refactored underrelaxation to guard against zero G.  Added forced-transition subiteration output dump — shunz / detail
  114. Turned off limiting on G variable.  Made H validity check tighter — shunz / detail
  115. Playing with a different form of lag equation in fitted transition approach.  Not much luck though.  So, as of now, using G as the primary unknown is already helpful — shunz / detail
  116. Playing with point source for setting ctau_{Turb,init} — shunz / detail
  117. Refactored forced transition point source for ctau jump — shunz / detail
  118. playing with point source for ctau jump in free transition — shunz / detail
  119. Tried implementing ctau jump condition via flux modification — shunz / detail
  120. Got a captured transition result with sharp ctau jump at free transition front — shunz / detail
  121. Added explicit instantiation — shunz / detail
  122. Genearalized HubTrace boundary trace integrand by ridding of any PDE/BC dependence — shunz / detail
  123. Generalized IBL solution DOF setter — shunz / detail
  124. Implemented a different formulation for captured transition by splitting the amplification and lag equations — shunz / detail
  125. Added instantiations — shunz / detail
  126. Fixed amplification and lag source terms in new IBL PDE class — shunz / detail
  127. Verified NACA0012 Re1e5 results against XFOIL (separated fully laminar BL) — shunz / detail
  128. Add a lower limit to the modeled turbulent initial ctau — shunz / detail
  129. Minor refactoring — shunz / detail
  130. Fixed a bug in solution initialization — shunz / detail
  131. Refactored masterState calculation from cumulation to assignment — shunz / detail
  132. minor tidying — shunz / detail
  133. Refactored smooth intermittency blending to allow for natural and forced transition as the same time — shunz / detail
  134. Allowed for initializing p0 IBL solution from input file — shunz / detail
  135. Added H upper limit in validity check — shunz / detail
  136. SplitAmpLag working on NACA0012 Re 2e5 separation bubble — shunz / detail
  137. Cosmetic edit — shunz / detail
  138. Decoupled nt variables of BL from nt of the wake — shunz / detail
  139. Converged p=0 solution on ne64 and n128 grids for Eppler 387 case — shunz / detail
  140. minor cleanup — shunz / detail
  141. renaming — shunz / detail
  142. Refactored state validity check — shunz / detail
  143. minor refactoring — shunz / detail
  144. Added IO files for testing Eppler 387 airfoil — shunz / detail
  145. Typo fix — shunz / detail
  146. Tried PTC for IBLSplitAmpLag captured transition case — shunz / detail
  147. Further simplified amplification equation at hubtrace — shunz / detail
  148. Added grid and initial solution files — shunz / detail
  149. minor cleanup — shunz / detail
  150. added hessian to Joukowski solution — allmaras / detail
  151. bug fix in Joukowski test — allmaras / detail
  152. Minor edit — shunz / detail
  153. Refactored a case — shunz / detail
  154. Fixed calls to jacobianTranspose of daisy-chained algebraic equation set — shunz / detail
  155. Cleanup — shunz / detail
  156. minor refactoring — shunz / detail
  157. minor edit to running case — shunz / detail
  158. Refactored printed normed reisudals when line-search fails. — shunz / detail
  159. Refactored running case — shunz / detail
  160. Minor cleanup — shunz / detail
  161. Minor fix — shunz / detail
  162. Refactored uncoupled IBL case and added pyrite file — shunz / detail
  163. Fixed HDG continuous implementation.  Reverted to Var(delta, A, G) to not hacking scaling delta and A.  Cleaned up some system tests — shunz / detail
  164. Refactored two test cases — shunz / detail
  165. Added Hk lower limit check when checking state validity for IBLUniField with correlation closures — shunz / detail
  166. Added pyrite check file.  Refactored test cases and enabled PTC on one of them. — shunz / detail
  167. Fix pyrite check — shunz / detail
  168. Fixed undefined variables — shunz / detail
  169. Updated a pyrite file to be consistent with the latest settings in IBLUniField — shunz / detail
  170. Deleted a redundant case — shunz / detail
  171. added some commented out hack for fully turbulent BL simulation with IBLUniField — shunz / detail
  172. Updated pyrite file — shunz / detail
  173. Added exceptions as safe guards — shunz / detail
  174. cosmetic refactoring — shunz / detail
  175. cosmetic refactoring — shunz / detail
  176. Added a pyrite file and changed test file name — shunz / detail
  177. turned on set IBL dofs for p=0 for DsThG — shunz / detail
  178. Dumped singular jacobian when UMFPACK finds it — shunz / detail
  179. Refactored system test cases — shunz / detail
  180. Using a less conservative initial CFL for PTC in a test case — shunz / detail
  181. Refactored system test case — shunz / detail
  182. Added some auxiliary functions for system test cases — shunz / detail
  183. Added some debugging options — shunz / detail
  184. Minor refactoring — shunz / detail
  185. Simplified upwind flux in IBL to improve code reuse — shunz / detail
  186. Commented out hacks.  Added minor guards.  Dumped matrix when UMFPACK linear solve fails. — shunz / detail
  187. Laminar-turbulent blending works for Eppler 387 now.  Turned on G limiting in updateFraction — shunz / detail
  188. Cleaned up and refactored projection to Qauxi — shunz / detail
  189. Removed redundant TopoDim templates following Hugh's recent updates — shunz / detail
  190. playing with numerical flux and nt growth rate in laminar-turbulent blending formulation — shunz / detail
  191. Playing with various grid-dependent laminar-turbulent blending strategies — shunz / detail
  192. minor cleanup — shunz / detail
  193. Use value instead of reference since equivalence is checked instead of identity — shunz / detail
  194. Added output — shunz / detail
  195. Tweaked LF flux dissipation coefficient a bit.  Modified lag source term to prevent ctau to drop with ctau_Tinit after reaching its peak.  Hacking grid dependent blending.  Left system test case unchecked for the moment — shunz / detail
  196. Added Hs derivatives with unit tests.  Fixed typos in closure unit tests — shunz / detail
  197. Abstracted Re_theta calculation — shunz / detail
  198. Added Roe flux based on arithmetic average state — shunz / detail
  199. Added class for setting qaux field from file — shunz / detail
  200. Typo fix — shunz / detail
  201. Minor refactoring — shunz / detail
  202. Output blended IBL quantities — shunz / detail
  203. Added an uncoupled IBL case — shunz / detail
  204. Added qinif initialization to a shared file for setting up IBL case — shunz / detail
  205. Using qinf initialization from a shared file — shunz / detail
  206. Refactored Roe flux for IBL — shunz / detail
  207. Added entropy fix — shunz / detail
  208. Just hacking around.  The hacky stuff are turned off — shunz / detail
  209. Reformulated DG-IBL interface flux and finally fixed solution oscillation in transition cases.  Saved other miscellaneous updates — shunz / detail
  210. cosmetic changes (with hacks being commented out) — shunz / detail
  211. Normalize KE equation by q^2 — shunz / detail
  212. editted comments — shunz / detail
  213. Use pde fluxAdvective function to calculate outflow flux at Hubtrace boundary — shunz / detail
  214. cleaned up some hacks — shunz / detail
  215. minor cleanup — shunz / detail
  216. Accidentally messed up blended source term.  Restore it now. — shunz / detail
  217. Stashed some intermediate edits — shunz / detail
  218. Fixed the numerical flux of IBL momentum equations to eliminate solution jumps and/or oscillations.  Also cleaned up temporary hacks. — shunz / detail
  219. Make intermittency length scale a parameter in the transition model.  Cleaned up old hacks in in PDEIBLSplitAmpLag2D — shunz / detail
  220. More cleanup — shunz / detail
  221. minor edits — shunz / detail
  222. Disable search for boost-cmake; otherwise, runs into conflicts with FindBoost.  Need to resolve this if using boost-cmake in the future — shunz / detail
  223. Minor cleanup following last merge commit — shunz / detail
  224. Minor fixes to keep up with changes in the main branch — shunz / detail
  225. Add pyrite check on E387 airfoil transition separation bubble case — shunz / detail
  226. Update Solve2D_Coupled4x4_IBLSplitAmpLag_CorrelationClosure_CapturedTransition_PTC_btest.cpp — shunz / detail
  227. Cleaned up the numerical flux options in Qauxi projection.  All three numerical fluxes produce similar well-behaved results.  Add a sandbox case — shunz / detail
  228. working on advective field case... — cfrontin / detail
  229. asdfasdf — cfrontin / detail
  230. working on the advective field and it's broken LOL — cfrontin / detail
  231. fix mpi dg — cfrontin / detail
  232. trying to figure out idiosyncracy — cfrontin / detail
  233. cont'd — cfrontin / detail
  234. cont'd pt. ii — cfrontin / detail
  235. name fix — cfrontin / detail
  236. oopsie — cfrontin / detail
  237. working on random field — cfrontin / detail
  238. updated random fields, should be working but untested. — cfrontin / detail
  239. unit tests for adjoint — arthuang / detail
  240. fixes to compute AR etc. — hcarson / detail
  241. Fix for EPIC 2D without geometry — galbramc / detail
  242. jenkins fix, holdover code. — cfrontin / detail
  243. adding block pivoting to ilu — arthuang / detail
  244. a VMSDBR2 version of the DeltaWing Chain toy — hcarson / detail
  245. Enable static condensation with MKL — galbramc / detail
  246. Missed a static condensation step — galbramc / detail
  247. Another MKL static condensation fix — galbramc / detail
  248. Relaxed tolerance — galbramc / detail
  249. a VMSDBR2 Double BL, also lining up the 3 so that they are the same. HOWEVER, Seems to be something very wrong with plain VMSD, the adapt looks crap and the error is enormous.... — hcarson / detail
  250. Updates for latest refine — galbramc / detail
  251. urop fix? — cfrontin / detail
  252. jenkins fix, odds and ends. — cfrontin / detail
  253. added 2D+T VMSD AD case. — cfrontin / detail
  254. minor edit — shunz / detail
  255. refactored the new PDE IBL class and added unit tests — shunz / detail
  256. fixed LF flux — shunz / detail
  257. Relocated blended intermittency to PDE class.  Added unit tests. — shunz / detail
  258. Added unit tests to VarInterpret — shunz / detail
  259. Fixed intermittency usage in auxi equation — shunz / detail
  260. refactored intermittency calculation calling signature across different variants of IBL formulations — shunz / detail
  261. Fixed type — shunz / detail
  262. Refactored unit tests to keep up with updates in the thickness class — shunz / detail
  263. Cleaned up manifold interface integrand implementation.  Minor type corrections for unit tests involving Surreal types. — shunz / detail
  264. Fixed ping tests by adjusting the reference solution and step size — shunz / detail
  265. Refactored  PDEIBLSplitAmgLag2D default flux and ctau_min.  Added pyrite check files — shunz / detail
  266. updated pyrite files — shunz / detail
  267. Refactored IBL solution file reader.  Cleaned up system tests for various IBL formulations — shunz / detail
  268. Removed IO file clutter — shunz / detail
  269. Added variable data constructors.  Fixed types.  File cleanup — shunz / detail
  270. Fixed IBL solution reader usage — shunz / detail
  271. Recovered a system test on IBLUniField — shunz / detail
  272. Cleaned up system tests — shunz / detail
  273. Fixed IBL solution reader usage — shunz / detail
  274. Fixed duplicate symbols by inline.  Added a missing pyrite check file — shunz / detail
  275. Relaxed pyrite tolerance.  Fixed unit tests for IBL soluton file reader — shunz / detail
  276. Suppressed file output for Jenkins — shunz / detail
  277. Suppressed one more file output for Jenkins. — shunz / detail
  278. Fixed unused variable — shunz / detail
  279. Relaxed pyrite tolerances for gnu — shunz / detail
  280. Subtle typo in pyrite filename — shunz / detail
  281. Relaxed tolerances for intel compilers — shunz / detail
  282. Relaxed pyrite tolerance.  Added explicit instantiation to fix linker error — shunz / detail
  283. Relaxed tolerance. Fixed timeout on Jenkins — shunz / detail
  284. Relaxed pyrite tolerances — shunz / detail
  285. relaxed tolerance on d/dxdy test — allmaras / detail
  286. Replace Joukowski q1 grid — galbramc / detail
  287. coverage improvement — cfrontin / detail
  288. hotfix — cfrontin / detail
  289. quick fix — cfrontin / detail
  290. Attempt to use parallel MKL (does not work yet). Other small cleanups. — galbramc / detail
  291. Added cartesian table lookup for PorusMedia SPE calculations — galbramc / detail
  292. Use atlas blas on rhel7 — galbramc / detail
  293. 2d+t hex solve patch. — cfrontin / detail
  294. belated nomenclature fix — cfrontin / detail
  295. Consistent delete — galbramc / detail
  296. VMSDBR2 3D+T additions. — cfrontin / detail
  297. added squarechannel vmsd br2 changes — cfrontin / detail
  298. General PETSc verson on macOZ for jenkins — galbramc / detail
  299. Suppress tetgen CMake warning. Relax tolerance for macOS — galbramc / detail
  300. Allow MKL as BLAS library. Update macOS PETSc. Fix tolerance. — galbramc / detail
  301. Add option to dump per rank matrix market file from PETSc — galbramc / detail
  302. 1st crack at SPE10 test case; compiles but errors out when run; — allmaras / detail
  303. unit tests for PorosityModel_CartTable — allmaras / detail
  304. unit tests for Porosivity and Permeability — allmaras / detail
  305. Fix for PETSc matrix market dump — galbramc / detail
  306. bug fixes in 2-phase porous flow classes/tests; added CartTable unit tests for PDETwoPhase2D — allmaras / detail
  307. updated SPE10 test case to include lookup poro/perm tables; BCs now complaining about CartTable — allmaras / detail
  308. reverted to original functionality on fluxAdvectiveUpwind: no-op rather than developer exception; — allmaras / detail
  309. added "#include <fstream>" in lookup table tests — allmaras / detail
  310. SPE10 testcase: added avro include files and check on SANS_AVRO — allmaras / detail
  311. cppcheck fixes — galbramc / detail
  312. Jenkins updates — galbramc / detail
  313. Added Kyle Anderson k-ordering to PETSc — galbramc / detail
  314. Another jenkins update — galbramc / detail
  315. Fix warnings — galbramc / detail
  316. vmsd sip -> vmsd br2 in sandbox — cfrontin / detail
  317. Update CMake build to Nlopt 2.6.1 — galbramc / detail
  318. SPE10 testcase: added needed instantiations for BC parameters, algebraic eq set, error estimates — allmaras / detail
  319. more vmsd sip -> vmsd br2 in sandbox — cfrontin / detail
  320. Fix k-ordering — galbramc / detail
  321. Fix for k-ordering with BAIJ PETSc matrices — galbramc / detail
  322. fixed typo in comments; no change in functionality — allmaras / detail
  323. SPE10 testcase: fixed typos/bugs in instantiations — allmaras / detail
  324. SPE10: changed avro check to BOOST_FAIL, so code always compiles even if USE_AVRO not defined — allmaras / detail
  325. Implemented refine 2D API interface — galbramc / detail
  326. SPE10: generalized output functional to sum over a vector of outflow wells — allmaras / detail
  327. SPE10: added multiple wells to output functional — allmaras / detail
  328. SPE10: trying to achieve successful compile when SANS_AVRO not defined — allmaras / detail
  329. SPE10: added checks on porosity & permeability table lookups — allmaras / detail
  330. Upgrade ccache version — galbramc / detail
  331. vmsd -> sip again — cfrontin / detail
  332. 2D refine updates to swork with CAD. Not done yet. — galbramc / detail
  333. Fix compile error — galbramc / detail
  334. Suppress some cppcheck warnings — galbramc / detail
  335. Tweak for jenkins Commit script — galbramc / detail
  336. less sharp exact soln, BR2 not SIP — cfrontin / detail
  337. and output fix — cfrontin / detail
  338. eliminated option to use single/scalar source to initialize OutputTwoPhase2D_Flowrate; — allmaras / detail
  339. added test for 1x1 constant lookup table — allmaras / detail
  340. typo fix in output functional source class name (SourceClass -> SourceOutflowClass) — allmaras / detail
  341. another intel suppression for valgrind — galbramc / detail
  342. cppcheck suppression — galbramc / detail
  343. Added a scaling factor to PermeabilityModel2D_CartTable to fix units in SPE10 case. Added rock compressibility to PorosityModel_CartTable, and updated unit tests. Added phi, Kxx, and Kyy as derived quantities to PDETwoPhase2D for visualization. Added table look-up files with homogeneous data for SPE10. — savithru / detail
  344. Fixed unused variable warning — savithru / detail
  345. forcing function adjustment... not improved :( — cfrontin / detail
  346. Update for latest refine — galbramc / detail
  347. SingularException destructor instantiation — galbramc / detail
  348. Rename BCEulermitAVDiffusion to BCEulermitAVSensor since the name makes more sense — blsc / detail
  349. First pass at including artificial viscosity model from Holst (2020) — blsc / detail
  350. GCC9 caught some unitialized data — blsc / detail
  351. A few bugs — blsc / detail
  352. Unit tests and associated bug fixes — blsc / detail
  353. Fix library ordering for HSM — galbramc / detail
  354. Updated gcc warning regex — galbramc / detail
  355. Increase timout times — galbramc / detail
  356. Slight correction to refine unit test — galbramc / detail
  357. Updates for refine incliding 2D triangle hack. Still need help from Mike. — galbramc / detail
  358. Dissable refine 2D test — galbramc / detail
  359. Refine now works in 2D — galbramc / detail
  360. Add restart interface for refine — galbramc / detail
  361. Increase timeour for refine2D tests — galbramc / detail
  362. Use MPI_sleep for avro execution — galbramc / detail
  363. Only write EGADS file from one processor and reduce iterations in refine2D_btest — galbramc / detail
  364. Add missing include — galbramc / detail
  365. Relax refine timie a bit more — galbramc / detail
  366. Add missing link library — galbramc / detail
  367. refine2D with EGADS still does not quite work. — galbramc / detail
  368. Fix for parallel 2D refine — galbramc / detail
  369. One more refine fix — galbramc / detail
  370. Only remove files on the rank 0 processor — galbramc / detail
  371. Warning fixes — galbramc / detail
  372. Fix up Box Tet WakeCut for adjoint — galbramc / detail
  373. Added Ismail-Roe entropy conservative flux (with optional entropy fix based on Harten) in 2D. Unit tested to ensure: primal and entropy consistency for the entropy conservative formulation, primal consistency and entropy dissipation for version with entropy fix. Extension to RANSSA NOT implemented. — blsc / detail
  374. Added header: src/pde/NS/Roe.h to src/pde/NS/IsmailRoe.h to it can access datatype: RoeEntropyFix — blsc / detail
  375. Typo fix in enum RoeEntropyFix: eIsmailRoeEntopyNeutral -> eIsmailRoeEntropyNeutral — blsc / detail
  376. Added SPE10 permeability datasets with reduced contrast ratios — savithru / detail
  377. Updated quarter five spot case to use avro — savithru / detail
  378. lorenz building, not converging. need unit tests. — blsc / detail
  379. in progress... — blsc / detail
  380. lorenz in progress, not converging, seems to need stabilization. — blsc / detail
  381. working on vmsd. — blsc / detail
  382. added DG, broken. now VMSD and DGBR2 are both broken and CG is unstable :) — blsc / detail
  383. more of the same. — blsc / detail
  384. made some fixes, fem of lorenz seems to be working (w/ 4M elements...) — blsc / detail
  385. trying to figure out what's wrong — blsc / detail
  386. unit test addition.. — blsc / detail
  387. hmm looking for valgrid shit now. — blsc / detail
  388. added exact solution for alpha=0 case. — blsc / detail
  389. configured for convergence test, convergent. — blsc / detail
  390. output tricks — blsc / detail
  391. working on homotopy pde — blsc / detail
  392. for marshall — blsc / detail
  393. Some progress for BCHomotopy — blsc / detail
  394. homotopy in progress (still) — blsc / detail
  395. on the way to a block 2x2 version of htc... — blsc / detail
  396. slow but steady. — blsc / detail
  397. on the curve between the easy solution and the hard one — blsc / detail
  398. bob loblaw law blog — blsc / detail
  399. homotopy might be working might be leaking might be a figment of my imagination. — blsc / detail
  400. fieldbase uninitialized data fix. — blsc / detail
  401. homotopy running but breaking for chaos :( — blsc / detail
  402. added dumps — blsc / detail
  403. fixed homotopy bug i think. — blsc / detail
  404. added adaptive stepping to homotopy. — blsc / detail
  405. ready for ben — blsc / detail
  406. state of the art — blsc / detail
  407. small changes. — blsc / detail
  408. Removed PDE template from BCLorenz since it was no longer needed. Generalized the new homotopy integrand so it can be applied to Real and VectorS PDE::ArrayQ types. Updates required adding move construction and move assignment operator to VectorBlock_2 to prevent warnings about using implicit constructors under g++9. Propogated the required changes to unit test and sandbox cases. — blsc / detail
  409. Statically condensed VMSD with homotopy: Updated the jacobian functions in the the HTC algebraic equation set, added logic for static condensation to Block 2x2 matrix interface with UMFPACK, and also had to expose the types of the vectors in VectorBlock_2. Also updated the Homotopy logic to be more robust, which mostly consists of making sure steps taken in the predictor phase are valid. — blsc / detail
  410. Added ability to pass q and qp into source term individually for VMSDBR2. This is needed for some of the resolution sensors I am experimenting with for shock capturing. This required an additional source function to be added to PDEs that takes q, qp, gradq, and gradqp. Currently, this new function forwards (q+qp) and (gradq+gradqp) to the original source function. Unit tests have been added to test consistency of this new source term. — blsc / detail
  411. Added new boundary condition: BCTypeFullStateRadialInflow_mitState. This is a FullState_mitState style boundary condition, except velocity magnitude is specified. The direction is then calculated as radially outward from an origin at (0,0). — blsc / detail
  412. Added PDESourceOnly2D which implements a pde q - a = 0. This is for use as the auxiliary equation for Homotopy continuation. Unit tests added to applying this PDE to adevction diffusion, Euler and Euler with artificial diffusion. Also found that the jacobianMasterState and jacobianFluxAdvectveTime functions were reversed for the sensor PDE. This has been fixed and unit tests updated. — blsc / detail
  413. Setting up a bump in a subsonic inviscid flow. Now verbose enables / disables all console output of the halving linesearch. Also added some extra function to PDEEuler2D to forward calls that have params. — blsc / detail
  414. Added sourceCoarse and sourceFine function calls to VMSDBR2, which are source terms weighted against the coarse and fine space test functions respectively. For the most part these forward calls to the source function in the PDE. These are required because VMSD does not have a unique solution for the PDE q - a = 0 if a is a constant. Since this is the case in the SourceOnly PDE, that PDE now solves (\bar{q} - a) = 0, and q' = 0. — blsc / detail
  415. Setting up RadialShock problem using VMSDBR2 and Homotopy. This required instantiating objects relating to the Block 2x2 linear algebra for PDEs of dimension 5. It also required adding the new source functions to the Sensor PDE. — blsc / detail
  416. Renamed eLaplaceViscosity to eLaplaceViscosityEnthalpy in enum EulerArtViscosity. This is a more descriptive name for this option: artificial diffusion is applied to the gradient of total enthalpy (not total internal energy as a pure Laplacian operator would suggest). Now the option eLaplaceViscosityEnergy can be added to the enum EulerArtViscosity to describe the artificial diffusion being applied to the conservation variables. — blsc / detail
  417. Upgraded to latest AFLR — galbramc / detail
  418. Added eLaplaceViscosityEnergy to enum EulerArtViscosity. This applies a Laplacian operator to the conservation variable gradient (i.e. energy gradient not enthalpy gradient). System tests have been added to ensure that the calculation is correct for Euler2D and RANSSA2D PDEs. — blsc / detail
  419. Fixed two bugs highlighted by Jenkins. 1) PDELorenz was using abs on a Real. 2) Several lines in SolutionFunction_Euler2D.h were too long. — blsc / detail
  420. Look for Real Time library for AFLR — galbramc / detail
  421. Fix for last commit — galbramc / detail
  422. A few AFLR fixes — galbramc / detail
  423. Previous commits overwrote some updates to the PETSc interface, so had to revert to commit 8fa5bcb008f4c19ec223d6ebfa628f6d4d9354cd for those files. Also updated files that failed vera checks. — blsc / detail
  424. Instantiations for Block2x2 systems for a PDE of 5 equations were missing from MKL. Also, the version of UMFPack on Ubuntu 12.04 does not support the new exception types, so have reverted src/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver.cpp back to commit 45d3cd53036a51bccf943d9c5097544bd220d8f8 — blsc / detail
  425. Relaxed tolerances on JacobianCell_VMSD_BR2_AD_btest for intel. Added #ifdef protection on the new UMFPACk error flags for older versions of UMFPack (pre 5.5) — blsc / detail
  426. Updated BuildBoost to Boost 1.72 — galbramc / detail
  427. Updated AFLR to 16.30.11. Lots of cppcheck fixes. — galbramc / detail
  428. Add missing include — galbramc / detail
  429. Fixes for AFLR4 farfield mesh generation — galbramc / detail
  430. A few nightly fixes — galbramc / detail
  431. Add continuousGlobalMap for LIP solvers — galbramc / detail
  432. Fix the last fix — galbramc / detail
  433. Use CMake python when building boost — galbramc / detail
  434. Fix for gold linker with MKL — galbramc / detail
  435. Some more nightly fixes — galbramc / detail
  436. One more nightly fix — galbramc / detail
  437. CMake fixes for CentOS 8 — galbramc / detail
  438. Relax timing some more — galbramc / detail
  439. Correction for finding boost python — galbramc / detail
  440. Some more time relaxation — galbramc / detail
  441. Look for vera++ on CentOS 8 as well — galbramc / detail
  442. speed up a system test by using a better initial solution — shunz / detail
  443. Boost numpy was added with 1.65 — galbramc / detail
  444. remove some system tests that are no longer essential — shunz / detail
  445. remove more non-essential system test — shunz / detail
  446. remove more non-essential system test — shunz / detail
  447. Check if NLOPT direcfory exists on jenkins node — galbramc / detail
  448. Fix array out of bounds for refine. Fix parallel make for jenkins. — galbramc / detail

#260 (Apr 16, 2020, 8:54:53 PM)

  1. Added variable interpreter for primary unknowns = {delta*, theta, G} — shunz / detail
  2. Refactored IBL profile type identifier — shunz / detail
  3. Added unit tests to VarInterpret — shunz / detail
  4. Fixed unit test — shunz / detail
  5. Added a new class for calculating thicknesses and coeffcients, along with unit tests. — shunz / detail
  6. Typo fixes — shunz / detail
  7. Refactored PDEIBLUniField to use genealized thicknesses/coeffcients calculation routines.  Verified uncoupled IBL run with airfoil only — shunz / detail
  8. Refactoring to get coupled IBLUniField to work without transition.  Caveat: pyrite check is fine with delta & A variables, but mismatches G (maybe numerical precision issue? to be eamined) — shunz / detail
  9. Cleaned up obsolete stuff — shunz / detail
  10. Cleanup — shunz / detail
  11. Renaming/cleanup — shunz / detail
  12. Preliminary implementation of correlation closure — shunz / detail
  13. Minor refactoring — shunz / detail
  14. First run of correlation-closure IBL on an uncoupled airfoil-only case, compared reasonably well with profile-closure results — shunz / detail
  15. minor edit — shunz / detail
  16. Added turbulent closure from MSES paper.  Ran coupled IBL on airfoil+wake configuration, comparing reasonably well with IBL based on profile closures — shunz / detail
  17. Distinguished H from Hk (kinematic). — shunz / detail
  18. Reduced code repetition — shunz / detail
  19. Added some XFOIL closures — shunz / detail
  20. Added more XFOIL closures — shunz / detail
  21. Typo fixes — shunz / detail
  22. Refactored Uslip calculation — shunz / detail
  23. Fixed a typo in xfoil laminar BL closure — shunz / detail
  24. Added pyrite check for XFOIL laminar BL closure — shunz / detail
  25. Recovered the correct double dissipation for wake.  Added pyrite files — shunz / detail
  26. Added output dumping functions for correlation-closure IBL — shunz / detail
  27. Refactored output function and added a utility function — shunz / detail
  28. Added XFOIL amplification growth rate closure, which is almost identical to IBL — shunz / detail
  29. Modified lag equation and CDiss closure a bit. — shunz / detail
  30. With modified lag equation, laminarBL+turbulentWake results matches XFOIL very closely — shunz / detail
  31. Added captured transition test case with pyrite file for correlation-based IBL — shunz / detail
  32. Fixed an innocuous bug — shunz / detail
  33. Re-enabled LF flux — shunz / detail
  34. Added machinery for loading up IBL solution from input file — shunz / detail
  35. Make LF flux a default for IBL — shunz / detail
  36. Refactored blended intermittency calculation for correlation-based closure — shunz / detail
  37. Do no apply blending for wake — shunz / detail
  38. Switched to generalized thickness/coeffcient calculation for duplicate-field IBL as well.  Verified uncoupled airfoil case with full upwind — shunz / detail
  39. Bug fix — shunz / detail
  40. Verified coupled case with laminarBL+turbulentWake — shunz / detail
  41. Minor refactoring — shunz / detail
  42. minor cleanup — shunz / detail
  43. Added instantiation and fixed transition test cases — shunz / detail
  44. Added a missing method — shunz / detail
  45. Added a pyrite check for NACA0012 case (with flow separation) — shunz / detail
  46. Added a different set of initial solution.  Allowed for laminar BL to turn turbulent during transient state — shunz / detail
  47. Added new IBL variable type — shunz / detail
  48. Added unit tests and fixed bugs — shunz / detail
  49. Generalized dummy equations in duplicate-field IBL pde class — shunz / detail
  50. Follow-up fixes for test cases affected by earlier commits — shunz / detail
  51. Refactored solution initialization — shunz / detail
  52. Enabled correlation-based two-field IBL formulation.  Added test case of coupled IBL with lamiBL+turbWake and corresponding pyrite file. — shunz / detail
  53. Refactored updateFraction in PDEIBL and also fixed the sign in solution update — shunz / detail
  54. Generalized cut-cell machinery to handle two different sets of IBL primary unknowns — shunz / detail
  55. Added pyrite check — shunz / detail
  56. Added comments — shunz / detail
  57. Minor refactoring.  Added missing initial solution file — shunz / detail
  58. Intermediate commit — shunz / detail
  59. Cleaned up test cases — shunz / detail
  60. Refactored updateFraction — shunz / detail
  61. Added a pyrite check — shunz / detail
  62. Relaxed tolerance — shunz / detail
  63. Refactoring updateFraction.  Added an expedient guard against too small Hk — shunz / detail
  64. Added underrelaxation — shunz / detail
  65. Added underrelaxation-related stuff — shunz / detail
  66. Cosmetic edtis — shunz / detail
  67. Verified pyrite check for fitted-transition IBL on NACA0012 Re=1e5 massively separated laminar BL — shunz / detail
  68. Added Cf replacement for turbulent BL with too small Retheta — shunz / detail
  69. Added a pyrite file — shunz / detail
  70. Added a pyrite file — shunz / detail
  71. BC refactoring and unit test fix — shunz / detail
  72. Refactored BC and added unit tests — shunz / detail
  73. Improved coverage by removing redundant safety guards — shunz / detail
  74. Just renaming — shunz / detail
  75. Refactoring and unit testing — shunz / detail
  76. Fixed a bug in Cf correlation.  Added unit test — shunz / detail
  77. Type fix — shunz / detail
  78. Unit tested correlations from XFOIL. — shunz / detail
  79. Refactored amplification growth correlation calculation for speedup --> changed the floating-point arithmetic a bit  Added unit tests. — shunz / detail
  80. added comments — shunz / detail
  81. Cleanup — shunz / detail
  82. Cleanup — shunz / detail
  83. Dump additional output files for examination — shunz / detail
  84. Unit test fixes — shunz / detail
  85. More unit test fixes — shunz / detail
  86. Unit test fix — shunz / detail
  87. Refactored blended intermittency calculation and added unit tests — shunz / detail
  88. Refactored updateFraction and added unit tests — shunz / detail
  89. minor fixes — shunz / detail
  90. matching old system pyrite test: coupled IBLUniField profile-closure lamiBL+turbWake — shunz / detail
  91. Changed initial solution guess — shunz / detail
  92. Bug fix.  Equality operator is sensitive to type: std::string vs its reference. — shunz / detail
  93. Minor refactoring — shunz / detail
  94. Added comments — shunz / detail
  95. Refactored unit tests — shunz / detail
  96. Refactored source terms and added unit tests for PDEIBL2D — shunz / detail
  97. Refactored ctau_{turb,init}.  Unit tested turbulent sub-cell source term for amplification eqn in cut-cell transition formulation — shunz / detail
  98. Fix for vera formatting check.  Also a minor refactoring — shunz / detail
  99. Minor refactoring — shunz / detail
  100. Refactored ctau_{turb,init} fitting calculation — shunz / detail
  101. Forgot to save  this in the last commit... — shunz / detail
  102. Unit-tested upwind advective flux in two-fIeld IBL pde class — shunz / detail
  103. Minor commenting — shunz / detail
  104. Minor refactoring — shunz / detail
  105. minor refactoring — shunz / detail
  106. Refactored dummy matching equations for fitted transition — shunz / detail
  107. Forgot to commit this in the last pass — shunz / detail
  108. Modified artificial amplification source term in fully turbulent elements.  Pluse other minor refactoring — shunz / detail
  109. Make sure scales are non-negative — shunz / detail
  110. Enabled G=ln(ctau^0.5) as a primary unknown in place of ctau.  It helps with nonlinear solution. — shunz / detail
  111. Fixed unit tests — shunz / detail
  112. Dumping matching variables for transition — shunz / detail
  113. Refactored underrelaxation to guard against zero G.  Added forced-transition subiteration output dump — shunz / detail
  114. Turned off limiting on G variable.  Made H validity check tighter — shunz / detail
  115. Playing with a different form of lag equation in fitted transition approach.  Not much luck though.  So, as of now, using G as the primary unknown is already helpful — shunz / detail
  116. Playing with point source for setting ctau_{Turb,init} — shunz / detail
  117. Refactored forced transition point source for ctau jump — shunz / detail
  118. playing with point source for ctau jump in free transition — shunz / detail
  119. Tried implementing ctau jump condition via flux modification — shunz / detail
  120. Got a captured transition result with sharp ctau jump at free transition front — shunz / detail
  121. Added explicit instantiation — shunz / detail
  122. Genearalized HubTrace boundary trace integrand by ridding of any PDE/BC dependence — shunz / detail
  123. Generalized IBL solution DOF setter — shunz / detail
  124. Implemented a different formulation for captured transition by splitting the amplification and lag equations — shunz / detail
  125. Added instantiations — shunz / detail
  126. Fixed amplification and lag source terms in new IBL PDE class — shunz / detail
  127. Verified NACA0012 Re1e5 results against XFOIL (separated fully laminar BL) — shunz / detail
  128. Add a lower limit to the modeled turbulent initial ctau — shunz / detail
  129. Minor refactoring — shunz / detail
  130. Fixed a bug in solution initialization — shunz / detail
  131. Refactored masterState calculation from cumulation to assignment — shunz / detail
  132. minor tidying — shunz / detail
  133. Refactored smooth intermittency blending to allow for natural and forced transition as the same time — shunz / detail
  134. Allowed for initializing p0 IBL solution from input file — shunz / detail
  135. Added H upper limit in validity check — shunz / detail
  136. SplitAmpLag working on NACA0012 Re 2e5 separation bubble — shunz / detail
  137. Cosmetic edit — shunz / detail
  138. Decoupled nt variables of BL from nt of the wake — shunz / detail
  139. Converged p=0 solution on ne64 and n128 grids for Eppler 387 case — shunz / detail
  140. minor cleanup — shunz / detail
  141. renaming — shunz / detail
  142. Refactored state validity check — shunz / detail
  143. minor refactoring — shunz / detail
  144. Added IO files for testing Eppler 387 airfoil — shunz / detail
  145. Typo fix — shunz / detail
  146. Tried PTC for IBLSplitAmpLag captured transition case — shunz / detail
  147. Further simplified amplification equation at hubtrace — shunz / detail
  148. Added grid and initial solution files — shunz / detail
  149. minor cleanup — shunz / detail
  150. added hessian to Joukowski solution — allmaras / detail
  151. bug fix in Joukowski test — allmaras / detail
  152. Minor edit — shunz / detail
  153. Refactored a case — shunz / detail
  154. Fixed calls to jacobianTranspose of daisy-chained algebraic equation set — shunz / detail
  155. Cleanup — shunz / detail
  156. minor refactoring — shunz / detail
  157. minor edit to running case — shunz / detail
  158. Refactored printed normed reisudals when line-search fails. — shunz / detail
  159. Refactored running case — shunz / detail
  160. Minor cleanup — shunz / detail
  161. Minor fix — shunz / detail
  162. Refactored uncoupled IBL case and added pyrite file — shunz / detail
  163. Fixed HDG continuous implementation.  Reverted to Var(delta, A, G) to not hacking scaling delta and A.  Cleaned up some system tests — shunz / detail
  164. Refactored two test cases — shunz / detail
  165. Added Hk lower limit check when checking state validity for IBLUniField with correlation closures — shunz / detail
  166. Added pyrite check file.  Refactored test cases and enabled PTC on one of them. — shunz / detail
  167. Fix pyrite check — shunz / detail
  168. Fixed undefined variables — shunz / detail
  169. Updated a pyrite file to be consistent with the latest settings in IBLUniField — shunz / detail
  170. Deleted a redundant case — shunz / detail
  171. added some commented out hack for fully turbulent BL simulation with IBLUniField — shunz / detail
  172. Updated pyrite file — shunz / detail
  173. Added exceptions as safe guards — shunz / detail
  174. cosmetic refactoring — shunz / detail
  175. cosmetic refactoring — shunz / detail
  176. Added a pyrite file and changed test file name — shunz / detail
  177. turned on set IBL dofs for p=0 for DsThG — shunz / detail
  178. Dumped singular jacobian when UMFPACK finds it — shunz / detail
  179. Refactored system test cases — shunz / detail
  180. Using a less conservative initial CFL for PTC in a test case — shunz / detail
  181. Refactored system test case — shunz / detail
  182. Added some auxiliary functions for system test cases — shunz / detail
  183. Added some debugging options — shunz / detail
  184. Minor refactoring — shunz / detail
  185. Simplified upwind flux in IBL to improve code reuse — shunz / detail
  186. Commented out hacks.  Added minor guards.  Dumped matrix when UMFPACK linear solve fails. — shunz / detail
  187. Laminar-turbulent blending works for Eppler 387 now.  Turned on G limiting in updateFraction — shunz / detail
  188. Cleaned up and refactored projection to Qauxi — shunz / detail
  189. Removed redundant TopoDim templates following Hugh's recent updates — shunz / detail
  190. playing with numerical flux and nt growth rate in laminar-turbulent blending formulation — shunz / detail
  191. Playing with various grid-dependent laminar-turbulent blending strategies — shunz / detail
  192. minor cleanup — shunz / detail
  193. Use value instead of reference since equivalence is checked instead of identity — shunz / detail
  194. Added output — shunz / detail
  195. Tweaked LF flux dissipation coefficient a bit.  Modified lag source term to prevent ctau to drop with ctau_Tinit after reaching its peak.  Hacking grid dependent blending.  Left system test case unchecked for the moment — shunz / detail
  196. Added Hs derivatives with unit tests.  Fixed typos in closure unit tests — shunz / detail
  197. Abstracted Re_theta calculation — shunz / detail
  198. Added Roe flux based on arithmetic average state — shunz / detail
  199. Added class for setting qaux field from file — shunz / detail
  200. Typo fix — shunz / detail
  201. Minor refactoring — shunz / detail
  202. Output blended IBL quantities — shunz / detail
  203. Added an uncoupled IBL case — shunz / detail
  204. Added qinif initialization to a shared file for setting up IBL case — shunz / detail
  205. Using qinf initialization from a shared file — shunz / detail
  206. Refactored Roe flux for IBL — shunz / detail
  207. Added entropy fix — shunz / detail
  208. Just hacking around.  The hacky stuff are turned off — shunz / detail
  209. Reformulated DG-IBL interface flux and finally fixed solution oscillation in transition cases.  Saved other miscellaneous updates — shunz / detail
  210. cosmetic changes (with hacks being commented out) — shunz / detail
  211. Normalize KE equation by q^2 — shunz / detail
  212. editted comments — shunz / detail
  213. Use pde fluxAdvective function to calculate outflow flux at Hubtrace boundary — shunz / detail
  214. cleaned up some hacks — shunz / detail
  215. minor cleanup — shunz / detail
  216. Accidentally messed up blended source term.  Restore it now. — shunz / detail
  217. Stashed some intermediate edits — shunz / detail
  218. Fixed the numerical flux of IBL momentum equations to eliminate solution jumps and/or oscillations.  Also cleaned up temporary hacks. — shunz / detail
  219. Make intermittency length scale a parameter in the transition model.  Cleaned up old hacks in in PDEIBLSplitAmpLag2D — shunz / detail
  220. More cleanup — shunz / detail
  221. minor edits — shunz / detail
  222. Disable search for boost-cmake; otherwise, runs into conflicts with FindBoost.  Need to resolve this if using boost-cmake in the future — shunz / detail
  223. Minor cleanup following last merge commit — shunz / detail
  224. Minor fixes to keep up with changes in the main branch — shunz / detail
  225. Add pyrite check on E387 airfoil transition separation bubble case — shunz / detail
  226. Update Solve2D_Coupled4x4_IBLSplitAmpLag_CorrelationClosure_CapturedTransition_PTC_btest.cpp — shunz / detail
  227. Cleaned up the numerical flux options in Qauxi projection.  All three numerical fluxes produce similar well-behaved results.  Add a sandbox case — shunz / detail
  228. working on advective field case... — cfrontin / detail
  229. asdfasdf — cfrontin / detail
  230. working on the advective field and it's broken LOL — cfrontin / detail
  231. fix mpi dg — cfrontin / detail
  232. trying to figure out idiosyncracy — cfrontin / detail
  233. cont'd — cfrontin / detail
  234. cont'd pt. ii — cfrontin / detail
  235. name fix — cfrontin / detail
  236. oopsie — cfrontin / detail
  237. working on random field — cfrontin / detail
  238. updated random fields, should be working but untested. — cfrontin / detail
  239. unit tests for adjoint — arthuang / detail
  240. fixes to compute AR etc. — hcarson / detail
  241. Fix for EPIC 2D without geometry — galbramc / detail
  242. jenkins fix, holdover code. — cfrontin / detail
  243. adding block pivoting to ilu — arthuang / detail
  244. a VMSDBR2 version of the DeltaWing Chain toy — hcarson / detail
  245. Enable static condensation with MKL — galbramc / detail
  246. Missed a static condensation step — galbramc / detail
  247. Another MKL static condensation fix — galbramc / detail
  248. Relaxed tolerance — galbramc / detail
  249. a VMSDBR2 Double BL, also lining up the 3 so that they are the same. HOWEVER, Seems to be something very wrong with plain VMSD, the adapt looks crap and the error is enormous.... — hcarson / detail
  250. Updates for latest refine — galbramc / detail
  251. urop fix? — cfrontin / detail
  252. jenkins fix, odds and ends. — cfrontin / detail
  253. added 2D+T VMSD AD case. — cfrontin / detail
  254. minor edit — shunz / detail
  255. refactored the new PDE IBL class and added unit tests — shunz / detail
  256. fixed LF flux — shunz / detail
  257. Relocated blended intermittency to PDE class.  Added unit tests. — shunz / detail
  258. Added unit tests to VarInterpret — shunz / detail
  259. Fixed intermittency usage in auxi equation — shunz / detail
  260. refactored intermittency calculation calling signature across different variants of IBL formulations — shunz / detail
  261. Fixed type — shunz / detail
  262. Refactored unit tests to keep up with updates in the thickness class — shunz / detail
  263. Cleaned up manifold interface integrand implementation.  Minor type corrections for unit tests involving Surreal types. — shunz / detail
  264. Fixed ping tests by adjusting the reference solution and step size — shunz / detail
  265. Refactored  PDEIBLSplitAmgLag2D default flux and ctau_min.  Added pyrite check files — shunz / detail
  266. updated pyrite files — shunz / detail
  267. Refactored IBL solution file reader.  Cleaned up system tests for various IBL formulations — shunz / detail
  268. Removed IO file clutter — shunz / detail
  269. Added variable data constructors.  Fixed types.  File cleanup — shunz / detail
  270. Fixed IBL solution reader usage — shunz / detail
  271. Recovered a system test on IBLUniField — shunz / detail
  272. Cleaned up system tests — shunz / detail
  273. Fixed IBL solution reader usage — shunz / detail
  274. Fixed duplicate symbols by inline.  Added a missing pyrite check file — shunz / detail
  275. Relaxed pyrite tolerance.  Fixed unit tests for IBL soluton file reader — shunz / detail
  276. Suppressed file output for Jenkins — shunz / detail
  277. Suppressed one more file output for Jenkins. — shunz / detail
  278. Fixed unused variable — shunz / detail
  279. Relaxed pyrite tolerances for gnu — shunz / detail
  280. Subtle typo in pyrite filename — shunz / detail
  281. Relaxed tolerances for intel compilers — shunz / detail
  282. Relaxed pyrite tolerance.  Added explicit instantiation to fix linker error — shunz / detail
  283. Relaxed tolerance. Fixed timeout on Jenkins — shunz / detail
  284. Relaxed pyrite tolerances — shunz / detail
  285. relaxed tolerance on d/dxdy test — allmaras / detail
  286. Replace Joukowski q1 grid — galbramc / detail
  287. coverage improvement — cfrontin / detail
  288. hotfix — cfrontin / detail
  289. quick fix — cfrontin / detail
  290. Attempt to use parallel MKL (does not work yet). Other small cleanups. — galbramc / detail
  291. Added cartesian table lookup for PorusMedia SPE calculations — galbramc / detail
  292. Use atlas blas on rhel7 — galbramc / detail
  293. 2d+t hex solve patch. — cfrontin / detail
  294. belated nomenclature fix — cfrontin / detail
  295. Consistent delete — galbramc / detail
  296. VMSDBR2 3D+T additions. — cfrontin / detail
  297. added squarechannel vmsd br2 changes — cfrontin / detail
  298. General PETSc verson on macOZ for jenkins — galbramc / detail
  299. Suppress tetgen CMake warning. Relax tolerance for macOS — galbramc / detail
  300. Allow MKL as BLAS library. Update macOS PETSc. Fix tolerance. — galbramc / detail
  301. Add option to dump per rank matrix market file from PETSc — galbramc / detail
  302. 1st crack at SPE10 test case; compiles but errors out when run; — allmaras / detail
  303. unit tests for PorosityModel_CartTable — allmaras / detail
  304. unit tests for Porosivity and Permeability — allmaras / detail
  305. Fix for PETSc matrix market dump — galbramc / detail
  306. bug fixes in 2-phase porous flow classes/tests; added CartTable unit tests for PDETwoPhase2D — allmaras / detail
  307. updated SPE10 test case to include lookup poro/perm tables; BCs now complaining about CartTable — allmaras / detail
  308. reverted to original functionality on fluxAdvectiveUpwind: no-op rather than developer exception; — allmaras / detail
  309. added "#include <fstream>" in lookup table tests — allmaras / detail
  310. SPE10 testcase: added avro include files and check on SANS_AVRO — allmaras / detail
  311. cppcheck fixes — galbramc / detail
  312. Jenkins updates — galbramc / detail
  313. Added Kyle Anderson k-ordering to PETSc — galbramc / detail
  314. Another jenkins update — galbramc / detail
  315. Fix warnings — galbramc / detail
  316. vmsd sip -> vmsd br2 in sandbox — cfrontin / detail
  317. Update CMake build to Nlopt 2.6.1 — galbramc / detail
  318. SPE10 testcase: added needed instantiations for BC parameters, algebraic eq set, error estimates — allmaras / detail
  319. more vmsd sip -> vmsd br2 in sandbox — cfrontin / detail
  320. Fix k-ordering — galbramc / detail
  321. Fix for k-ordering with BAIJ PETSc matrices — galbramc / detail
  322. fixed typo in comments; no change in functionality — allmaras / detail
  323. SPE10 testcase: fixed typos/bugs in instantiations — allmaras / detail
  324. SPE10: changed avro check to BOOST_FAIL, so code always compiles even if USE_AVRO not defined — allmaras / detail
  325. Implemented refine 2D API interface — galbramc / detail
  326. SPE10: generalized output functional to sum over a vector of outflow wells — allmaras / detail
  327. SPE10: added multiple wells to output functional — allmaras / detail
  328. SPE10: trying to achieve successful compile when SANS_AVRO not defined — allmaras / detail
  329. SPE10: added checks on porosity & permeability table lookups — allmaras / detail
  330. Upgrade ccache version — galbramc / detail
  331. vmsd -> sip again — cfrontin / detail
  332. 2D refine updates to swork with CAD. Not done yet. — galbramc / detail
  333. Fix compile error — galbramc / detail
  334. Suppress some cppcheck warnings — galbramc / detail
  335. Tweak for jenkins Commit script — galbramc / detail
  336. less sharp exact soln, BR2 not SIP — cfrontin / detail
  337. and output fix — cfrontin / detail
  338. eliminated option to use single/scalar source to initialize OutputTwoPhase2D_Flowrate; — allmaras / detail
  339. added test for 1x1 constant lookup table — allmaras / detail
  340. typo fix in output functional source class name (SourceClass -> SourceOutflowClass) — allmaras / detail
  341. another intel suppression for valgrind — galbramc / detail
  342. cppcheck suppression — galbramc / detail
  343. Added a scaling factor to PermeabilityModel2D_CartTable to fix units in SPE10 case. Added rock compressibility to PorosityModel_CartTable, and updated unit tests. Added phi, Kxx, and Kyy as derived quantities to PDETwoPhase2D for visualization. Added table look-up files with homogeneous data for SPE10. — savithru / detail
  344. Fixed unused variable warning — savithru / detail
  345. forcing function adjustment... not improved :( — cfrontin / detail
  346. Update for latest refine — galbramc / detail
  347. SingularException destructor instantiation — galbramc / detail
  348. Rename BCEulermitAVDiffusion to BCEulermitAVSensor since the name makes more sense — blsc / detail
  349. First pass at including artificial viscosity model from Holst (2020) — blsc / detail
  350. GCC9 caught some unitialized data — blsc / detail
  351. A few bugs — blsc / detail
  352. Unit tests and associated bug fixes — blsc / detail
  353. Fix library ordering for HSM — galbramc / detail
  354. Updated gcc warning regex — galbramc / detail
  355. Increase timout times — galbramc / detail
  356. Slight correction to refine unit test — galbramc / detail
  357. Updates for refine incliding 2D triangle hack. Still need help from Mike. — galbramc / detail
  358. Dissable refine 2D test — galbramc / detail
  359. Refine now works in 2D — galbramc / detail
  360. Add restart interface for refine — galbramc / detail
  361. Increase timeour for refine2D tests — galbramc / detail
  362. Use MPI_sleep for avro execution — galbramc / detail
  363. Only write EGADS file from one processor and reduce iterations in refine2D_btest — galbramc / detail
  364. Add missing include — galbramc / detail
  365. Relax refine timie a bit more — galbramc / detail
  366. Add missing link library — galbramc / detail
  367. refine2D with EGADS still does not quite work. — galbramc / detail
  368. Fix for parallel 2D refine — galbramc / detail
  369. One more refine fix — galbramc / detail
  370. Only remove files on the rank 0 processor — galbramc / detail
  371. Warning fixes — galbramc / detail
  372. Fix up Box Tet WakeCut for adjoint — galbramc / detail
  373. Added Ismail-Roe entropy conservative flux (with optional entropy fix based on Harten) in 2D. Unit tested to ensure: primal and entropy consistency for the entropy conservative formulation, primal consistency and entropy dissipation for version with entropy fix. Extension to RANSSA NOT implemented. — blsc / detail
  374. Added header: src/pde/NS/Roe.h to src/pde/NS/IsmailRoe.h to it can access datatype: RoeEntropyFix — blsc / detail
  375. Typo fix in enum RoeEntropyFix: eIsmailRoeEntopyNeutral -> eIsmailRoeEntropyNeutral — blsc / detail
  376. Added SPE10 permeability datasets with reduced contrast ratios — savithru / detail
  377. Updated quarter five spot case to use avro — savithru / detail
  378. lorenz building, not converging. need unit tests. — blsc / detail
  379. in progress... — blsc / detail
  380. lorenz in progress, not converging, seems to need stabilization. — blsc / detail
  381. working on vmsd. — blsc / detail
  382. added DG, broken. now VMSD and DGBR2 are both broken and CG is unstable :) — blsc / detail
  383. more of the same. — blsc / detail
  384. made some fixes, fem of lorenz seems to be working (w/ 4M elements...) — blsc / detail
  385. trying to figure out what's wrong — blsc / detail
  386. unit test addition.. — blsc / detail
  387. hmm looking for valgrid shit now. — blsc / detail
  388. added exact solution for alpha=0 case. — blsc / detail
  389. configured for convergence test, convergent. — blsc / detail
  390. output tricks — blsc / detail
  391. working on homotopy pde — blsc / detail
  392. for marshall — blsc / detail
  393. Some progress for BCHomotopy — blsc / detail
  394. homotopy in progress (still) — blsc / detail
  395. on the way to a block 2x2 version of htc... — blsc / detail
  396. slow but steady. — blsc / detail
  397. on the curve between the easy solution and the hard one — blsc / detail
  398. bob loblaw law blog — blsc / detail
  399. homotopy might be working might be leaking might be a figment of my imagination. — blsc / detail
  400. fieldbase uninitialized data fix. — blsc / detail
  401. homotopy running but breaking for chaos :( — blsc / detail
  402. added dumps — blsc / detail
  403. fixed homotopy bug i think. — blsc / detail
  404. added adaptive stepping to homotopy. — blsc / detail
  405. ready for ben — blsc / detail
  406. state of the art — blsc / detail
  407. small changes. — blsc / detail
  408. Removed PDE template from BCLorenz since it was no longer needed. Generalized the new homotopy integrand so it can be applied to Real and VectorS PDE::ArrayQ types. Updates required adding move construction and move assignment operator to VectorBlock_2 to prevent warnings about using implicit constructors under g++9. Propogated the required changes to unit test and sandbox cases. — blsc / detail
  409. Statically condensed VMSD with homotopy: Updated the jacobian functions in the the HTC algebraic equation set, added logic for static condensation to Block 2x2 matrix interface with UMFPACK, and also had to expose the types of the vectors in VectorBlock_2. Also updated the Homotopy logic to be more robust, which mostly consists of making sure steps taken in the predictor phase are valid. — blsc / detail
  410. Added ability to pass q and qp into source term individually for VMSDBR2. This is needed for some of the resolution sensors I am experimenting with for shock capturing. This required an additional source function to be added to PDEs that takes q, qp, gradq, and gradqp. Currently, this new function forwards (q+qp) and (gradq+gradqp) to the original source function. Unit tests have been added to test consistency of this new source term. — blsc / detail
  411. Added new boundary condition: BCTypeFullStateRadialInflow_mitState. This is a FullState_mitState style boundary condition, except velocity magnitude is specified. The direction is then calculated as radially outward from an origin at (0,0). — blsc / detail
  412. Added PDESourceOnly2D which implements a pde q - a = 0. This is for use as the auxiliary equation for Homotopy continuation. Unit tests added to applying this PDE to adevction diffusion, Euler and Euler with artificial diffusion. Also found that the jacobianMasterState and jacobianFluxAdvectveTime functions were reversed for the sensor PDE. This has been fixed and unit tests updated. — blsc / detail
  413. Setting up a bump in a subsonic inviscid flow. Now verbose enables / disables all console output of the halving linesearch. Also added some extra function to PDEEuler2D to forward calls that have params. — blsc / detail
  414. Added sourceCoarse and sourceFine function calls to VMSDBR2, which are source terms weighted against the coarse and fine space test functions respectively. For the most part these forward calls to the source function in the PDE. These are required because VMSD does not have a unique solution for the PDE q - a = 0 if a is a constant. Since this is the case in the SourceOnly PDE, that PDE now solves (\bar{q} - a) = 0, and q' = 0. — blsc / detail
  415. Setting up RadialShock problem using VMSDBR2 and Homotopy. This required instantiating objects relating to the Block 2x2 linear algebra for PDEs of dimension 5. It also required adding the new source functions to the Sensor PDE. — blsc / detail
  416. Renamed eLaplaceViscosity to eLaplaceViscosityEnthalpy in enum EulerArtViscosity. This is a more descriptive name for this option: artificial diffusion is applied to the gradient of total enthalpy (not total internal energy as a pure Laplacian operator would suggest). Now the option eLaplaceViscosityEnergy can be added to the enum EulerArtViscosity to describe the artificial diffusion being applied to the conservation variables. — blsc / detail
  417. Upgraded to latest AFLR — galbramc / detail
  418. Added eLaplaceViscosityEnergy to enum EulerArtViscosity. This applies a Laplacian operator to the conservation variable gradient (i.e. energy gradient not enthalpy gradient). System tests have been added to ensure that the calculation is correct for Euler2D and RANSSA2D PDEs. — blsc / detail
  419. Fixed two bugs highlighted by Jenkins. 1) PDELorenz was using abs on a Real. 2) Several lines in SolutionFunction_Euler2D.h were too long. — blsc / detail
  420. Look for Real Time library for AFLR — galbramc / detail
  421. Fix for last commit — galbramc / detail
  422. A few AFLR fixes — galbramc / detail
  423. Previous commits overwrote some updates to the PETSc interface, so had to revert to commit 8fa5bcb008f4c19ec223d6ebfa628f6d4d9354cd for those files. Also updated files that failed vera checks. — blsc / detail
  424. Instantiations for Block2x2 systems for a PDE of 5 equations were missing from MKL. Also, the version of UMFPack on Ubuntu 12.04 does not support the new exception types, so have reverted src/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver.cpp back to commit 45d3cd53036a51bccf943d9c5097544bd220d8f8 — blsc / detail
  425. Relaxed tolerances on JacobianCell_VMSD_BR2_AD_btest for intel. Added #ifdef protection on the new UMFPACk error flags for older versions of UMFPack (pre 5.5) — blsc / detail
  426. Updated BuildBoost to Boost 1.72 — galbramc / detail
  427. Updated AFLR to 16.30.11. Lots of cppcheck fixes. — galbramc / detail
  428. Add missing include — galbramc / detail
  429. Fixes for AFLR4 farfield mesh generation — galbramc / detail
  430. A few nightly fixes — galbramc / detail
  431. Add continuousGlobalMap for LIP solvers — galbramc / detail
  432. Fix the last fix — galbramc / detail
  433. Use CMake python when building boost — galbramc / detail
  434. Fix for gold linker with MKL — galbramc / detail
  435. Some more nightly fixes — galbramc / detail
  436. One more nightly fix — galbramc / detail
  437. CMake fixes for CentOS 8 — galbramc / detail
  438. Relax timing some more — galbramc / detail
  439. Correction for finding boost python — galbramc / detail
  440. Some more time relaxation — galbramc / detail
  441. Look for vera++ on CentOS 8 as well — galbramc / detail
  442. speed up a system test by using a better initial solution — shunz / detail
  443. Boost numpy was added with 1.65 — galbramc / detail
  444. remove some system tests that are no longer essential — shunz / detail
  445. remove more non-essential system test — shunz / detail
  446. remove more non-essential system test — shunz / detail
  447. Check if NLOPT direcfory exists on jenkins node — galbramc / detail
  448. Fix array out of bounds for refine. Fix parallel make for jenkins. — galbramc / detail

#259 (Apr 16, 2020, 8:05:33 AM)

  1. Added variable interpreter for primary unknowns = {delta*, theta, G} — shunz / detail
  2. Refactored IBL profile type identifier — shunz / detail
  3. Added unit tests to VarInterpret — shunz / detail
  4. Fixed unit test — shunz / detail
  5. Added a new class for calculating thicknesses and coeffcients, along with unit tests. — shunz / detail
  6. Typo fixes — shunz / detail
  7. Refactored PDEIBLUniField to use genealized thicknesses/coeffcients calculation routines.  Verified uncoupled IBL run with airfoil only — shunz / detail
  8. Refactoring to get coupled IBLUniField to work without transition.  Caveat: pyrite check is fine with delta & A variables, but mismatches G (maybe numerical precision issue? to be eamined) — shunz / detail
  9. Cleaned up obsolete stuff — shunz / detail
  10. Cleanup — shunz / detail
  11. Renaming/cleanup — shunz / detail
  12. Preliminary implementation of correlation closure — shunz / detail
  13. Minor refactoring — shunz / detail
  14. First run of correlation-closure IBL on an uncoupled airfoil-only case, compared reasonably well with profile-closure results — shunz / detail
  15. minor edit — shunz / detail
  16. Added turbulent closure from MSES paper.  Ran coupled IBL on airfoil+wake configuration, comparing reasonably well with IBL based on profile closures — shunz / detail
  17. Distinguished H from Hk (kinematic). — shunz / detail
  18. Reduced code repetition — shunz / detail
  19. Added some XFOIL closures — shunz / detail
  20. Added more XFOIL closures — shunz / detail
  21. Typo fixes — shunz / detail
  22. Refactored Uslip calculation — shunz / detail
  23. Fixed a typo in xfoil laminar BL closure — shunz / detail
  24. Added pyrite check for XFOIL laminar BL closure — shunz / detail
  25. Recovered the correct double dissipation for wake.  Added pyrite files — shunz / detail
  26. Added output dumping functions for correlation-closure IBL — shunz / detail
  27. Refactored output function and added a utility function — shunz / detail
  28. Added XFOIL amplification growth rate closure, which is almost identical to IBL — shunz / detail
  29. Modified lag equation and CDiss closure a bit. — shunz / detail
  30. With modified lag equation, laminarBL+turbulentWake results matches XFOIL very closely — shunz / detail
  31. Added captured transition test case with pyrite file for correlation-based IBL — shunz / detail
  32. Fixed an innocuous bug — shunz / detail
  33. Re-enabled LF flux — shunz / detail
  34. Added machinery for loading up IBL solution from input file — shunz / detail
  35. Make LF flux a default for IBL — shunz / detail
  36. Refactored blended intermittency calculation for correlation-based closure — shunz / detail
  37. Do no apply blending for wake — shunz / detail
  38. Switched to generalized thickness/coeffcient calculation for duplicate-field IBL as well.  Verified uncoupled airfoil case with full upwind — shunz / detail
  39. Bug fix — shunz / detail
  40. Verified coupled case with laminarBL+turbulentWake — shunz / detail
  41. Minor refactoring — shunz / detail
  42. minor cleanup — shunz / detail
  43. Added instantiation and fixed transition test cases — shunz / detail
  44. Added a missing method — shunz / detail
  45. Added a pyrite check for NACA0012 case (with flow separation) — shunz / detail
  46. Added a different set of initial solution.  Allowed for laminar BL to turn turbulent during transient state — shunz / detail
  47. Added new IBL variable type — shunz / detail
  48. Added unit tests and fixed bugs — shunz / detail
  49. Generalized dummy equations in duplicate-field IBL pde class — shunz / detail
  50. Follow-up fixes for test cases affected by earlier commits — shunz / detail
  51. Refactored solution initialization — shunz / detail
  52. Enabled correlation-based two-field IBL formulation.  Added test case of coupled IBL with lamiBL+turbWake and corresponding pyrite file. — shunz / detail
  53. Refactored updateFraction in PDEIBL and also fixed the sign in solution update — shunz / detail
  54. Generalized cut-cell machinery to handle two different sets of IBL primary unknowns — shunz / detail
  55. Added pyrite check — shunz / detail
  56. Added comments — shunz / detail
  57. Minor refactoring.  Added missing initial solution file — shunz / detail
  58. Intermediate commit — shunz / detail
  59. Cleaned up test cases — shunz / detail
  60. Refactored updateFraction — shunz / detail
  61. Added a pyrite check — shunz / detail
  62. Relaxed tolerance — shunz / detail
  63. Refactoring updateFraction.  Added an expedient guard against too small Hk — shunz / detail
  64. Added underrelaxation — shunz / detail
  65. Added underrelaxation-related stuff — shunz / detail
  66. Cosmetic edtis — shunz / detail
  67. Verified pyrite check for fitted-transition IBL on NACA0012 Re=1e5 massively separated laminar BL — shunz / detail
  68. Added Cf replacement for turbulent BL with too small Retheta — shunz / detail
  69. Added a pyrite file — shunz / detail
  70. Added a pyrite file — shunz / detail
  71. BC refactoring and unit test fix — shunz / detail
  72. Refactored BC and added unit tests — shunz / detail
  73. Improved coverage by removing redundant safety guards — shunz / detail
  74. Just renaming — shunz / detail
  75. Refactoring and unit testing — shunz / detail
  76. Fixed a bug in Cf correlation.  Added unit test — shunz / detail
  77. Type fix — shunz / detail
  78. Unit tested correlations from XFOIL. — shunz / detail
  79. Refactored amplification growth correlation calculation for speedup --> changed the floating-point arithmetic a bit  Added unit tests. — shunz / detail
  80. added comments — shunz / detail
  81. Cleanup — shunz / detail
  82. Cleanup — shunz / detail
  83. Dump additional output files for examination — shunz / detail
  84. Unit test fixes — shunz / detail
  85. More unit test fixes — shunz / detail
  86. Unit test fix — shunz / detail
  87. Refactored blended intermittency calculation and added unit tests — shunz / detail
  88. Refactored updateFraction and added unit tests — shunz / detail
  89. minor fixes — shunz / detail
  90. matching old system pyrite test: coupled IBLUniField profile-closure lamiBL+turbWake — shunz / detail
  91. Changed initial solution guess — shunz / detail
  92. Bug fix.  Equality operator is sensitive to type: std::string vs its reference. — shunz / detail
  93. Minor refactoring — shunz / detail
  94. Added comments — shunz / detail
  95. Refactored unit tests — shunz / detail
  96. Refactored source terms and added unit tests for PDEIBL2D — shunz / detail
  97. Refactored ctau_{turb,init}.  Unit tested turbulent sub-cell source term for amplification eqn in cut-cell transition formulation — shunz / detail
  98. Fix for vera formatting check.  Also a minor refactoring — shunz / detail
  99. Minor refactoring — shunz / detail
  100. Refactored ctau_{turb,init} fitting calculation — shunz / detail
  101. Forgot to save  this in the last commit... — shunz / detail
  102. Unit-tested upwind advective flux in two-fIeld IBL pde class — shunz / detail
  103. Minor commenting — shunz / detail
  104. Minor refactoring — shunz / detail
  105. minor refactoring — shunz / detail
  106. Refactored dummy matching equations for fitted transition — shunz / detail
  107. Forgot to commit this in the last pass — shunz / detail
  108. Modified artificial amplification source term in fully turbulent elements.  Pluse other minor refactoring — shunz / detail
  109. Make sure scales are non-negative — shunz / detail
  110. Enabled G=ln(ctau^0.5) as a primary unknown in place of ctau.  It helps with nonlinear solution. — shunz / detail
  111. Fixed unit tests — shunz / detail
  112. Dumping matching variables for transition — shunz / detail
  113. Refactored underrelaxation to guard against zero G.  Added forced-transition subiteration output dump — shunz / detail
  114. Turned off limiting on G variable.  Made H validity check tighter — shunz / detail
  115. Playing with a different form of lag equation in fitted transition approach.  Not much luck though.  So, as of now, using G as the primary unknown is already helpful — shunz / detail
  116. Playing with point source for setting ctau_{Turb,init} — shunz / detail
  117. Refactored forced transition point source for ctau jump — shunz / detail
  118. playing with point source for ctau jump in free transition — shunz / detail
  119. Tried implementing ctau jump condition via flux modification — shunz / detail
  120. Got a captured transition result with sharp ctau jump at free transition front — shunz / detail
  121. Added explicit instantiation — shunz / detail
  122. Genearalized HubTrace boundary trace integrand by ridding of any PDE/BC dependence — shunz / detail
  123. Generalized IBL solution DOF setter — shunz / detail
  124. Implemented a different formulation for captured transition by splitting the amplification and lag equations — shunz / detail
  125. Added instantiations — shunz / detail
  126. Fixed amplification and lag source terms in new IBL PDE class — shunz / detail
  127. Verified NACA0012 Re1e5 results against XFOIL (separated fully laminar BL) — shunz / detail
  128. Add a lower limit to the modeled turbulent initial ctau — shunz / detail
  129. Minor refactoring — shunz / detail
  130. Fixed a bug in solution initialization — shunz / detail
  131. Refactored masterState calculation from cumulation to assignment — shunz / detail
  132. minor tidying — shunz / detail
  133. Refactored smooth intermittency blending to allow for natural and forced transition as the same time — shunz / detail
  134. Allowed for initializing p0 IBL solution from input file — shunz / detail
  135. Added H upper limit in validity check — shunz / detail
  136. SplitAmpLag working on NACA0012 Re 2e5 separation bubble — shunz / detail
  137. Cosmetic edit — shunz / detail
  138. Decoupled nt variables of BL from nt of the wake — shunz / detail
  139. Converged p=0 solution on ne64 and n128 grids for Eppler 387 case — shunz / detail
  140. minor cleanup — shunz / detail
  141. renaming — shunz / detail
  142. Refactored state validity check — shunz / detail
  143. minor refactoring — shunz / detail
  144. Added IO files for testing Eppler 387 airfoil — shunz / detail
  145. Typo fix — shunz / detail
  146. Tried PTC for IBLSplitAmpLag captured transition case — shunz / detail
  147. Further simplified amplification equation at hubtrace — shunz / detail
  148. Added grid and initial solution files — shunz / detail
  149. minor cleanup — shunz / detail
  150. added hessian to Joukowski solution — allmaras / detail
  151. bug fix in Joukowski test — allmaras / detail
  152. Minor edit — shunz / detail
  153. Refactored a case — shunz / detail
  154. Fixed calls to jacobianTranspose of daisy-chained algebraic equation set — shunz / detail
  155. Cleanup — shunz / detail
  156. minor refactoring — shunz / detail
  157. minor edit to running case — shunz / detail
  158. Refactored printed normed reisudals when line-search fails. — shunz / detail
  159. Refactored running case — shunz / detail
  160. Minor cleanup — shunz / detail
  161. Minor fix — shunz / detail
  162. Refactored uncoupled IBL case and added pyrite file — shunz / detail
  163. Fixed HDG continuous implementation.  Reverted to Var(delta, A, G) to not hacking scaling delta and A.  Cleaned up some system tests — shunz / detail
  164. Refactored two test cases — shunz / detail
  165. Added Hk lower limit check when checking state validity for IBLUniField with correlation closures — shunz / detail
  166. Added pyrite check file.  Refactored test cases and enabled PTC on one of them. — shunz / detail
  167. Fix pyrite check — shunz / detail
  168. Fixed undefined variables — shunz / detail
  169. Updated a pyrite file to be consistent with the latest settings in IBLUniField — shunz / detail
  170. Deleted a redundant case — shunz / detail
  171. added some commented out hack for fully turbulent BL simulation with IBLUniField — shunz / detail
  172. Updated pyrite file — shunz / detail
  173. Added exceptions as safe guards — shunz / detail
  174. cosmetic refactoring — shunz / detail
  175. cosmetic refactoring — shunz / detail
  176. Added a pyrite file and changed test file name — shunz / detail
  177. turned on set IBL dofs for p=0 for DsThG — shunz / detail
  178. Dumped singular jacobian when UMFPACK finds it — shunz / detail
  179. Refactored system test cases — shunz / detail
  180. Using a less conservative initial CFL for PTC in a test case — shunz / detail
  181. Refactored system test case — shunz / detail
  182. Added some auxiliary functions for system test cases — shunz / detail
  183. Added some debugging options — shunz / detail
  184. Minor refactoring — shunz / detail
  185. Simplified upwind flux in IBL to improve code reuse — shunz / detail
  186. Commented out hacks.  Added minor guards.  Dumped matrix when UMFPACK linear solve fails. — shunz / detail
  187. Laminar-turbulent blending works for Eppler 387 now.  Turned on G limiting in updateFraction — shunz / detail
  188. Cleaned up and refactored projection to Qauxi — shunz / detail
  189. Removed redundant TopoDim templates following Hugh's recent updates — shunz / detail
  190. playing with numerical flux and nt growth rate in laminar-turbulent blending formulation — shunz / detail
  191. Playing with various grid-dependent laminar-turbulent blending strategies — shunz / detail
  192. minor cleanup — shunz / detail
  193. Use value instead of reference since equivalence is checked instead of identity — shunz / detail
  194. Added output — shunz / detail
  195. Tweaked LF flux dissipation coefficient a bit.  Modified lag source term to prevent ctau to drop with ctau_Tinit after reaching its peak.  Hacking grid dependent blending.  Left system test case unchecked for the moment — shunz / detail
  196. Added Hs derivatives with unit tests.  Fixed typos in closure unit tests — shunz / detail
  197. Abstracted Re_theta calculation — shunz / detail
  198. Added Roe flux based on arithmetic average state — shunz / detail
  199. Added class for setting qaux field from file — shunz / detail
  200. Typo fix — shunz / detail
  201. Minor refactoring — shunz / detail
  202. Output blended IBL quantities — shunz / detail
  203. Added an uncoupled IBL case — shunz / detail
  204. Added qinif initialization to a shared file for setting up IBL case — shunz / detail
  205. Using qinf initialization from a shared file — shunz / detail
  206. Refactored Roe flux for IBL — shunz / detail
  207. Added entropy fix — shunz / detail
  208. Just hacking around.  The hacky stuff are turned off — shunz / detail
  209. Reformulated DG-IBL interface flux and finally fixed solution oscillation in transition cases.  Saved other miscellaneous updates — shunz / detail
  210. cosmetic changes (with hacks being commented out) — shunz / detail
  211. Normalize KE equation by q^2 — shunz / detail
  212. editted comments — shunz / detail
  213. Use pde fluxAdvective function to calculate outflow flux at Hubtrace boundary — shunz / detail
  214. cleaned up some hacks — shunz / detail
  215. minor cleanup — shunz / detail
  216. Accidentally messed up blended source term.  Restore it now. — shunz / detail
  217. Stashed some intermediate edits — shunz / detail
  218. Fixed the numerical flux of IBL momentum equations to eliminate solution jumps and/or oscillations.  Also cleaned up temporary hacks. — shunz / detail
  219. Make intermittency length scale a parameter in the transition model.  Cleaned up old hacks in in PDEIBLSplitAmpLag2D — shunz / detail
  220. More cleanup — shunz / detail
  221. minor edits — shunz / detail
  222. Disable search for boost-cmake; otherwise, runs into conflicts with FindBoost.  Need to resolve this if using boost-cmake in the future — shunz / detail
  223. Minor cleanup following last merge commit — shunz / detail
  224. Minor fixes to keep up with changes in the main branch — shunz / detail
  225. Add pyrite check on E387 airfoil transition separation bubble case — shunz / detail
  226. Update Solve2D_Coupled4x4_IBLSplitAmpLag_CorrelationClosure_CapturedTransition_PTC_btest.cpp — shunz / detail
  227. Cleaned up the numerical flux options in Qauxi projection.  All three numerical fluxes produce similar well-behaved results.  Add a sandbox case — shunz / detail
  228. working on advective field case... — cfrontin / detail
  229. asdfasdf — cfrontin / detail
  230. working on the advective field and it's broken LOL — cfrontin / detail
  231. fix mpi dg — cfrontin / detail
  232. trying to figure out idiosyncracy — cfrontin / detail
  233. cont'd — cfrontin / detail
  234. cont'd pt. ii — cfrontin / detail
  235. name fix — cfrontin / detail
  236. oopsie — cfrontin / detail
  237. working on random field — cfrontin / detail
  238. updated random fields, should be working but untested. — cfrontin / detail
  239. unit tests for adjoint — arthuang / detail
  240. fixes to compute AR etc. — hcarson / detail
  241. Fix for EPIC 2D without geometry — galbramc / detail
  242. jenkins fix, holdover code. — cfrontin / detail
  243. adding block pivoting to ilu — arthuang / detail
  244. a VMSDBR2 version of the DeltaWing Chain toy — hcarson / detail
  245. Enable static condensation with MKL — galbramc / detail
  246. Missed a static condensation step — galbramc / detail
  247. Another MKL static condensation fix — galbramc / detail
  248. Relaxed tolerance — galbramc / detail
  249. a VMSDBR2 Double BL, also lining up the 3 so that they are the same. HOWEVER, Seems to be something very wrong with plain VMSD, the adapt looks crap and the error is enormous.... — hcarson / detail
  250. Updates for latest refine — galbramc / detail
  251. urop fix? — cfrontin / detail
  252. jenkins fix, odds and ends. — cfrontin / detail
  253. added 2D+T VMSD AD case. — cfrontin / detail
  254. minor edit — shunz / detail
  255. refactored the new PDE IBL class and added unit tests — shunz / detail
  256. fixed LF flux — shunz / detail
  257. Relocated blended intermittency to PDE class.  Added unit tests. — shunz / detail
  258. Added unit tests to VarInterpret — shunz / detail
  259. Fixed intermittency usage in auxi equation — shunz / detail
  260. refactored intermittency calculation calling signature across different variants of IBL formulations — shunz / detail
  261. Fixed type — shunz / detail
  262. Refactored unit tests to keep up with updates in the thickness class — shunz / detail
  263. Cleaned up manifold interface integrand implementation.  Minor type corrections for unit tests involving Surreal types. — shunz / detail
  264. Fixed ping tests by adjusting the reference solution and step size — shunz / detail
  265. Refactored  PDEIBLSplitAmgLag2D default flux and ctau_min.  Added pyrite check files — shunz / detail
  266. updated pyrite files — shunz / detail
  267. Refactored IBL solution file reader.  Cleaned up system tests for various IBL formulations — shunz / detail
  268. Removed IO file clutter — shunz / detail
  269. Added variable data constructors.  Fixed types.  File cleanup — shunz / detail
  270. Fixed IBL solution reader usage — shunz / detail
  271. Recovered a system test on IBLUniField — shunz / detail
  272. Cleaned up system tests — shunz / detail
  273. Fixed IBL solution reader usage — shunz / detail
  274. Fixed duplicate symbols by inline.  Added a missing pyrite check file — shunz / detail
  275. Relaxed pyrite tolerance.  Fixed unit tests for IBL soluton file reader — shunz / detail
  276. Suppressed file output for Jenkins — shunz / detail
  277. Suppressed one more file output for Jenkins. — shunz / detail
  278. Fixed unused variable — shunz / detail
  279. Relaxed pyrite tolerances for gnu — shunz / detail
  280. Subtle typo in pyrite filename — shunz / detail
  281. Relaxed tolerances for intel compilers — shunz / detail
  282. Relaxed pyrite tolerance.  Added explicit instantiation to fix linker error — shunz / detail
  283. Relaxed tolerance. Fixed timeout on Jenkins — shunz / detail
  284. Relaxed pyrite tolerances — shunz / detail
  285. relaxed tolerance on d/dxdy test — allmaras / detail
  286. Replace Joukowski q1 grid — galbramc / detail
  287. coverage improvement — cfrontin / detail
  288. hotfix — cfrontin / detail
  289. quick fix — cfrontin / detail
  290. Attempt to use parallel MKL (does not work yet). Other small cleanups. — galbramc / detail
  291. Added cartesian table lookup for PorusMedia SPE calculations — galbramc / detail
  292. Use atlas blas on rhel7 — galbramc / detail
  293. 2d+t hex solve patch. — cfrontin / detail
  294. belated nomenclature fix — cfrontin / detail
  295. Consistent delete — galbramc / detail
  296. VMSDBR2 3D+T additions. — cfrontin / detail
  297. added squarechannel vmsd br2 changes — cfrontin / detail
  298. General PETSc verson on macOZ for jenkins — galbramc / detail
  299. Suppress tetgen CMake warning. Relax tolerance for macOS — galbramc / detail
  300. Allow MKL as BLAS library. Update macOS PETSc. Fix tolerance. — galbramc / detail
  301. Add option to dump per rank matrix market file from PETSc — galbramc / detail
  302. 1st crack at SPE10 test case; compiles but errors out when run; — allmaras / detail
  303. unit tests for PorosityModel_CartTable — allmaras / detail
  304. unit tests for Porosivity and Permeability — allmaras / detail
  305. Fix for PETSc matrix market dump — galbramc / detail
  306. bug fixes in 2-phase porous flow classes/tests; added CartTable unit tests for PDETwoPhase2D — allmaras / detail
  307. updated SPE10 test case to include lookup poro/perm tables; BCs now complaining about CartTable — allmaras / detail
  308. reverted to original functionality on fluxAdvectiveUpwind: no-op rather than developer exception; — allmaras / detail
  309. added "#include <fstream>" in lookup table tests — allmaras / detail
  310. SPE10 testcase: added avro include files and check on SANS_AVRO — allmaras / detail
  311. cppcheck fixes — galbramc / detail
  312. Jenkins updates — galbramc / detail
  313. Added Kyle Anderson k-ordering to PETSc — galbramc / detail
  314. Another jenkins update — galbramc / detail
  315. Fix warnings — galbramc / detail
  316. vmsd sip -> vmsd br2 in sandbox — cfrontin / detail
  317. Update CMake build to Nlopt 2.6.1 — galbramc / detail
  318. SPE10 testcase: added needed instantiations for BC parameters, algebraic eq set, error estimates — allmaras / detail
  319. more vmsd sip -> vmsd br2 in sandbox — cfrontin / detail
  320. Fix k-ordering — galbramc / detail
  321. Fix for k-ordering with BAIJ PETSc matrices — galbramc / detail
  322. fixed typo in comments; no change in functionality — allmaras / detail
  323. SPE10 testcase: fixed typos/bugs in instantiations — allmaras / detail
  324. SPE10: changed avro check to BOOST_FAIL, so code always compiles even if USE_AVRO not defined — allmaras / detail
  325. Implemented refine 2D API interface — galbramc / detail
  326. SPE10: generalized output functional to sum over a vector of outflow wells — allmaras / detail
  327. SPE10: added multiple wells to output functional — allmaras / detail
  328. SPE10: trying to achieve successful compile when SANS_AVRO not defined — allmaras / detail
  329. SPE10: added checks on porosity & permeability table lookups — allmaras / detail
  330. Upgrade ccache version — galbramc / detail
  331. vmsd -> sip again — cfrontin / detail
  332. 2D refine updates to swork with CAD. Not done yet. — galbramc / detail
  333. Fix compile error — galbramc / detail
  334. Suppress some cppcheck warnings — galbramc / detail
  335. Tweak for jenkins Commit script — galbramc / detail
  336. less sharp exact soln, BR2 not SIP — cfrontin / detail
  337. and output fix — cfrontin / detail
  338. eliminated option to use single/scalar source to initialize OutputTwoPhase2D_Flowrate; — allmaras / detail
  339. added test for 1x1 constant lookup table — allmaras / detail
  340. typo fix in output functional source class name (SourceClass -> SourceOutflowClass) — allmaras / detail
  341. another intel suppression for valgrind — galbramc / detail
  342. cppcheck suppression — galbramc / detail
  343. Added a scaling factor to PermeabilityModel2D_CartTable to fix units in SPE10 case. Added rock compressibility to PorosityModel_CartTable, and updated unit tests. Added phi, Kxx, and Kyy as derived quantities to PDETwoPhase2D for visualization. Added table look-up files with homogeneous data for SPE10. — savithru / detail
  344. Fixed unused variable warning — savithru / detail
  345. forcing function adjustment... not improved :( — cfrontin / detail
  346. Update for latest refine — galbramc / detail
  347. SingularException destructor instantiation — galbramc / detail
  348. Rename BCEulermitAVDiffusion to BCEulermitAVSensor since the name makes more sense — blsc / detail
  349. First pass at including artificial viscosity model from Holst (2020) — blsc / detail
  350. GCC9 caught some unitialized data — blsc / detail
  351. A few bugs — blsc / detail
  352. Unit tests and associated bug fixes — blsc / detail
  353. Fix library ordering for HSM — galbramc / detail
  354. Updated gcc warning regex — galbramc / detail
  355. Increase timout times — galbramc / detail
  356. Slight correction to refine unit test — galbramc / detail
  357. Updates for refine incliding 2D triangle hack. Still need help from Mike. — galbramc / detail
  358. Dissable refine 2D test — galbramc / detail
  359. Refine now works in 2D — galbramc / detail
  360. Add restart interface for refine — galbramc / detail
  361. Increase timeour for refine2D tests — galbramc / detail
  362. Use MPI_sleep for avro execution — galbramc / detail
  363. Only write EGADS file from one processor and reduce iterations in refine2D_btest — galbramc / detail
  364. Add missing include — galbramc / detail
  365. Relax refine timie a bit more — galbramc / detail
  366. Add missing link library — galbramc / detail
  367. refine2D with EGADS still does not quite work. — galbramc / detail
  368. Fix for parallel 2D refine — galbramc / detail
  369. One more refine fix — galbramc / detail
  370. Only remove files on the rank 0 processor — galbramc / detail
  371. Warning fixes — galbramc / detail
  372. Fix up Box Tet WakeCut for adjoint — galbramc / detail
  373. Added Ismail-Roe entropy conservative flux (with optional entropy fix based on Harten) in 2D. Unit tested to ensure: primal and entropy consistency for the entropy conservative formulation, primal consistency and entropy dissipation for version with entropy fix. Extension to RANSSA NOT implemented. — blsc / detail
  374. Added header: src/pde/NS/Roe.h to src/pde/NS/IsmailRoe.h to it can access datatype: RoeEntropyFix — blsc / detail
  375. Typo fix in enum RoeEntropyFix: eIsmailRoeEntopyNeutral -> eIsmailRoeEntropyNeutral — blsc / detail
  376. Added SPE10 permeability datasets with reduced contrast ratios — savithru / detail
  377. Updated quarter five spot case to use avro — savithru / detail
  378. lorenz building, not converging. need unit tests. — blsc / detail
  379. in progress... — blsc / detail
  380. lorenz in progress, not converging, seems to need stabilization. — blsc / detail
  381. working on vmsd. — blsc / detail
  382. added DG, broken. now VMSD and DGBR2 are both broken and CG is unstable :) — blsc / detail
  383. more of the same. — blsc / detail
  384. made some fixes, fem of lorenz seems to be working (w/ 4M elements...) — blsc / detail
  385. trying to figure out what's wrong — blsc / detail
  386. unit test addition.. — blsc / detail
  387. hmm looking for valgrid shit now. — blsc / detail
  388. added exact solution for alpha=0 case. — blsc / detail
  389. configured for convergence test, convergent. — blsc / detail
  390. output tricks — blsc / detail
  391. working on homotopy pde — blsc / detail
  392. for marshall — blsc / detail
  393. Some progress for BCHomotopy — blsc / detail
  394. homotopy in progress (still) — blsc / detail
  395. on the way to a block 2x2 version of htc... — blsc / detail
  396. slow but steady. — blsc / detail
  397. on the curve between the easy solution and the hard one — blsc / detail
  398. bob loblaw law blog — blsc / detail
  399. homotopy might be working might be leaking might be a figment of my imagination. — blsc / detail
  400. fieldbase uninitialized data fix. — blsc / detail
  401. homotopy running but breaking for chaos :( — blsc / detail
  402. added dumps — blsc / detail
  403. fixed homotopy bug i think. — blsc / detail
  404. added adaptive stepping to homotopy. — blsc / detail
  405. ready for ben — blsc / detail
  406. state of the art — blsc / detail
  407. small changes. — blsc / detail
  408. Removed PDE template from BCLorenz since it was no longer needed. Generalized the new homotopy integrand so it can be applied to Real and VectorS PDE::ArrayQ types. Updates required adding move construction and move assignment operator to VectorBlock_2 to prevent warnings about using implicit constructors under g++9. Propogated the required changes to unit test and sandbox cases. — blsc / detail
  409. Statically condensed VMSD with homotopy: Updated the jacobian functions in the the HTC algebraic equation set, added logic for static condensation to Block 2x2 matrix interface with UMFPACK, and also had to expose the types of the vectors in VectorBlock_2. Also updated the Homotopy logic to be more robust, which mostly consists of making sure steps taken in the predictor phase are valid. — blsc / detail
  410. Added ability to pass q and qp into source term individually for VMSDBR2. This is needed for some of the resolution sensors I am experimenting with for shock capturing. This required an additional source function to be added to PDEs that takes q, qp, gradq, and gradqp. Currently, this new function forwards (q+qp) and (gradq+gradqp) to the original source function. Unit tests have been added to test consistency of this new source term. — blsc / detail
  411. Added new boundary condition: BCTypeFullStateRadialInflow_mitState. This is a FullState_mitState style boundary condition, except velocity magnitude is specified. The direction is then calculated as radially outward from an origin at (0,0). — blsc / detail
  412. Added PDESourceOnly2D which implements a pde q - a = 0. This is for use as the auxiliary equation for Homotopy continuation. Unit tests added to applying this PDE to adevction diffusion, Euler and Euler with artificial diffusion. Also found that the jacobianMasterState and jacobianFluxAdvectveTime functions were reversed for the sensor PDE. This has been fixed and unit tests updated. — blsc / detail
  413. Setting up a bump in a subsonic inviscid flow. Now verbose enables / disables all console output of the halving linesearch. Also added some extra function to PDEEuler2D to forward calls that have params. — blsc / detail
  414. Added sourceCoarse and sourceFine function calls to VMSDBR2, which are source terms weighted against the coarse and fine space test functions respectively. For the most part these forward calls to the source function in the PDE. These are required because VMSD does not have a unique solution for the PDE q - a = 0 if a is a constant. Since this is the case in the SourceOnly PDE, that PDE now solves (\bar{q} - a) = 0, and q' = 0. — blsc / detail
  415. Setting up RadialShock problem using VMSDBR2 and Homotopy. This required instantiating objects relating to the Block 2x2 linear algebra for PDEs of dimension 5. It also required adding the new source functions to the Sensor PDE. — blsc / detail
  416. Renamed eLaplaceViscosity to eLaplaceViscosityEnthalpy in enum EulerArtViscosity. This is a more descriptive name for this option: artificial diffusion is applied to the gradient of total enthalpy (not total internal energy as a pure Laplacian operator would suggest). Now the option eLaplaceViscosityEnergy can be added to the enum EulerArtViscosity to describe the artificial diffusion being applied to the conservation variables. — blsc / detail
  417. Upgraded to latest AFLR — galbramc / detail
  418. Added eLaplaceViscosityEnergy to enum EulerArtViscosity. This applies a Laplacian operator to the conservation variable gradient (i.e. energy gradient not enthalpy gradient). System tests have been added to ensure that the calculation is correct for Euler2D and RANSSA2D PDEs. — blsc / detail
  419. Fixed two bugs highlighted by Jenkins. 1) PDELorenz was using abs on a Real. 2) Several lines in SolutionFunction_Euler2D.h were too long. — blsc / detail
  420. Look for Real Time library for AFLR — galbramc / detail
  421. Fix for last commit — galbramc / detail
  422. A few AFLR fixes — galbramc / detail
  423. Previous commits overwrote some updates to the PETSc interface, so had to revert to commit 8fa5bcb008f4c19ec223d6ebfa628f6d4d9354cd for those files. Also updated files that failed vera checks. — blsc / detail
  424. Instantiations for Block2x2 systems for a PDE of 5 equations were missing from MKL. Also, the version of UMFPack on Ubuntu 12.04 does not support the new exception types, so have reverted src/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver.cpp back to commit 45d3cd53036a51bccf943d9c5097544bd220d8f8 — blsc / detail
  425. Relaxed tolerances on JacobianCell_VMSD_BR2_AD_btest for intel. Added #ifdef protection on the new UMFPACk error flags for older versions of UMFPack (pre 5.5) — blsc / detail
  426. Updated BuildBoost to Boost 1.72 — galbramc / detail
  427. Updated AFLR to 16.30.11. Lots of cppcheck fixes. — galbramc / detail
  428. Add missing include — galbramc / detail
  429. Fixes for AFLR4 farfield mesh generation — galbramc / detail
  430. A few nightly fixes — galbramc / detail
  431. Add continuousGlobalMap for LIP solvers — galbramc / detail
  432. Fix the last fix — galbramc / detail
  433. Use CMake python when building boost — galbramc / detail
  434. Fix for gold linker with MKL — galbramc / detail
  435. Some more nightly fixes — galbramc / detail
  436. One more nightly fix — galbramc / detail
  437. CMake fixes for CentOS 8 — galbramc / detail
  438. Relax timing some more — galbramc / detail
  439. Correction for finding boost python — galbramc / detail
  440. Some more time relaxation — galbramc / detail
  441. Look for vera++ on CentOS 8 as well — galbramc / detail
  442. speed up a system test by using a better initial solution — shunz / detail
  443. Boost numpy was added with 1.65 — galbramc / detail
  444. remove some system tests that are no longer essential — shunz / detail
  445. remove more non-essential system test — shunz / detail
  446. remove more non-essential system test — shunz / detail
  447. Check if NLOPT direcfory exists on jenkins node — galbramc / detail
  448. Fix array out of bounds for refine. Fix parallel make for jenkins. — galbramc / detail

#258 (Apr 14, 2020, 8:16:52 AM)

  1. Added variable interpreter for primary unknowns = {delta*, theta, G} — shunz / detail
  2. Refactored IBL profile type identifier — shunz / detail
  3. Added unit tests to VarInterpret — shunz / detail
  4. Fixed unit test — shunz / detail
  5. Added a new class for calculating thicknesses and coeffcients, along with unit tests. — shunz / detail
  6. Typo fixes — shunz / detail
  7. Refactored PDEIBLUniField to use genealized thicknesses/coeffcients calculation routines.  Verified uncoupled IBL run with airfoil only — shunz / detail
  8. Refactoring to get coupled IBLUniField to work without transition.  Caveat: pyrite check is fine with delta & A variables, but mismatches G (maybe numerical precision issue? to be eamined) — shunz / detail
  9. Cleaned up obsolete stuff — shunz / detail
  10. Cleanup — shunz / detail
  11. Renaming/cleanup — shunz / detail
  12. Preliminary implementation of correlation closure — shunz / detail
  13. Minor refactoring — shunz / detail
  14. First run of correlation-closure IBL on an uncoupled airfoil-only case, compared reasonably well with profile-closure results — shunz / detail
  15. minor edit — shunz / detail
  16. Added turbulent closure from MSES paper.  Ran coupled IBL on airfoil+wake configuration, comparing reasonably well with IBL based on profile closures — shunz / detail
  17. Distinguished H from Hk (kinematic). — shunz / detail
  18. Reduced code repetition — shunz / detail
  19. Added some XFOIL closures — shunz / detail
  20. Added more XFOIL closures — shunz / detail
  21. Typo fixes — shunz / detail
  22. Refactored Uslip calculation — shunz / detail
  23. Fixed a typo in xfoil laminar BL closure — shunz / detail
  24. Added pyrite check for XFOIL laminar BL closure — shunz / detail
  25. Recovered the correct double dissipation for wake.  Added pyrite files — shunz / detail
  26. Added output dumping functions for correlation-closure IBL — shunz / detail
  27. Refactored output function and added a utility function — shunz / detail
  28. Added XFOIL amplification growth rate closure, which is almost identical to IBL — shunz / detail
  29. Modified lag equation and CDiss closure a bit. — shunz / detail
  30. With modified lag equation, laminarBL+turbulentWake results matches XFOIL very closely — shunz / detail
  31. Added captured transition test case with pyrite file for correlation-based IBL — shunz / detail
  32. Fixed an innocuous bug — shunz / detail
  33. Re-enabled LF flux — shunz / detail
  34. Added machinery for loading up IBL solution from input file — shunz / detail
  35. Make LF flux a default for IBL — shunz / detail
  36. Refactored blended intermittency calculation for correlation-based closure — shunz / detail
  37. Do no apply blending for wake — shunz / detail
  38. Switched to generalized thickness/coeffcient calculation for duplicate-field IBL as well.  Verified uncoupled airfoil case with full upwind — shunz / detail
  39. Bug fix — shunz / detail
  40. Verified coupled case with laminarBL+turbulentWake — shunz / detail
  41. Minor refactoring — shunz / detail
  42. minor cleanup — shunz / detail
  43. Added instantiation and fixed transition test cases — shunz / detail
  44. Added a missing method — shunz / detail
  45. Added a pyrite check for NACA0012 case (with flow separation) — shunz / detail
  46. Added a different set of initial solution.  Allowed for laminar BL to turn turbulent during transient state — shunz / detail
  47. Added new IBL variable type — shunz / detail
  48. Added unit tests and fixed bugs — shunz / detail
  49. Generalized dummy equations in duplicate-field IBL pde class — shunz / detail
  50. Follow-up fixes for test cases affected by earlier commits — shunz / detail
  51. Refactored solution initialization — shunz / detail
  52. Enabled correlation-based two-field IBL formulation.  Added test case of coupled IBL with lamiBL+turbWake and corresponding pyrite file. — shunz / detail
  53. Refactored updateFraction in PDEIBL and also fixed the sign in solution update — shunz / detail
  54. Generalized cut-cell machinery to handle two different sets of IBL primary unknowns — shunz / detail
  55. Added pyrite check — shunz / detail
  56. Added comments — shunz / detail
  57. Minor refactoring.  Added missing initial solution file — shunz / detail
  58. Intermediate commit — shunz / detail
  59. Cleaned up test cases — shunz / detail
  60. Refactored updateFraction — shunz / detail
  61. Added a pyrite check — shunz / detail
  62. Relaxed tolerance — shunz / detail
  63. Refactoring updateFraction.  Added an expedient guard against too small Hk — shunz / detail
  64. Added underrelaxation — shunz / detail
  65. Added underrelaxation-related stuff — shunz / detail
  66. Cosmetic edtis — shunz / detail
  67. Verified pyrite check for fitted-transition IBL on NACA0012 Re=1e5 massively separated laminar BL — shunz / detail
  68. Added Cf replacement for turbulent BL with too small Retheta — shunz / detail
  69. Added a pyrite file — shunz / detail
  70. Added a pyrite file — shunz / detail
  71. BC refactoring and unit test fix — shunz / detail
  72. Refactored BC and added unit tests — shunz / detail
  73. Improved coverage by removing redundant safety guards — shunz / detail
  74. Just renaming — shunz / detail
  75. Refactoring and unit testing — shunz / detail
  76. Fixed a bug in Cf correlation.  Added unit test — shunz / detail
  77. Type fix — shunz / detail
  78. Unit tested correlations from XFOIL. — shunz / detail
  79. Refactored amplification growth correlation calculation for speedup --> changed the floating-point arithmetic a bit  Added unit tests. — shunz / detail
  80. added comments — shunz / detail
  81. Cleanup — shunz / detail
  82. Cleanup — shunz / detail
  83. Dump additional output files for examination — shunz / detail
  84. Unit test fixes — shunz / detail
  85. More unit test fixes — shunz / detail
  86. Unit test fix — shunz / detail
  87. Refactored blended intermittency calculation and added unit tests — shunz / detail
  88. Refactored updateFraction and added unit tests — shunz / detail
  89. minor fixes — shunz / detail
  90. matching old system pyrite test: coupled IBLUniField profile-closure lamiBL+turbWake — shunz / detail
  91. Changed initial solution guess — shunz / detail
  92. Bug fix.  Equality operator is sensitive to type: std::string vs its reference. — shunz / detail
  93. Minor refactoring — shunz / detail
  94. Added comments — shunz / detail
  95. Refactored unit tests — shunz / detail
  96. Refactored source terms and added unit tests for PDEIBL2D — shunz / detail
  97. Refactored ctau_{turb,init}.  Unit tested turbulent sub-cell source term for amplification eqn in cut-cell transition formulation — shunz / detail
  98. Fix for vera formatting check.  Also a minor refactoring — shunz / detail
  99. Minor refactoring — shunz / detail
  100. Refactored ctau_{turb,init} fitting calculation — shunz / detail
  101. Forgot to save  this in the last commit... — shunz / detail
  102. Unit-tested upwind advective flux in two-fIeld IBL pde class — shunz / detail
  103. Minor commenting — shunz / detail
  104. Minor refactoring — shunz / detail
  105. minor refactoring — shunz / detail
  106. Refactored dummy matching equations for fitted transition — shunz / detail
  107. Forgot to commit this in the last pass — shunz / detail
  108. Modified artificial amplification source term in fully turbulent elements.  Pluse other minor refactoring — shunz / detail
  109. Make sure scales are non-negative — shunz / detail
  110. Enabled G=ln(ctau^0.5) as a primary unknown in place of ctau.  It helps with nonlinear solution. — shunz / detail
  111. Fixed unit tests — shunz / detail
  112. Dumping matching variables for transition — shunz / detail
  113. Refactored underrelaxation to guard against zero G.  Added forced-transition subiteration output dump — shunz / detail
  114. Turned off limiting on G variable.  Made H validity check tighter — shunz / detail
  115. Playing with a different form of lag equation in fitted transition approach.  Not much luck though.  So, as of now, using G as the primary unknown is already helpful — shunz / detail
  116. Playing with point source for setting ctau_{Turb,init} — shunz / detail
  117. Refactored forced transition point source for ctau jump — shunz / detail
  118. playing with point source for ctau jump in free transition — shunz / detail
  119. Tried implementing ctau jump condition via flux modification — shunz / detail
  120. Got a captured transition result with sharp ctau jump at free transition front — shunz / detail
  121. Added explicit instantiation — shunz / detail
  122. Genearalized HubTrace boundary trace integrand by ridding of any PDE/BC dependence — shunz / detail
  123. Generalized IBL solution DOF setter — shunz / detail
  124. Implemented a different formulation for captured transition by splitting the amplification and lag equations — shunz / detail
  125. Added instantiations — shunz / detail
  126. Fixed amplification and lag source terms in new IBL PDE class — shunz / detail
  127. Verified NACA0012 Re1e5 results against XFOIL (separated fully laminar BL) — shunz / detail
  128. Add a lower limit to the modeled turbulent initial ctau — shunz / detail
  129. Minor refactoring — shunz / detail
  130. Fixed a bug in solution initialization — shunz / detail
  131. Refactored masterState calculation from cumulation to assignment — shunz / detail
  132. minor tidying — shunz / detail
  133. Refactored smooth intermittency blending to allow for natural and forced transition as the same time — shunz / detail
  134. Allowed for initializing p0 IBL solution from input file — shunz / detail
  135. Added H upper limit in validity check — shunz / detail
  136. SplitAmpLag working on NACA0012 Re 2e5 separation bubble — shunz / detail
  137. Cosmetic edit — shunz / detail
  138. Decoupled nt variables of BL from nt of the wake — shunz / detail
  139. Converged p=0 solution on ne64 and n128 grids for Eppler 387 case — shunz / detail
  140. minor cleanup — shunz / detail
  141. renaming — shunz / detail
  142. Refactored state validity check — shunz / detail
  143. minor refactoring — shunz / detail
  144. Added IO files for testing Eppler 387 airfoil — shunz / detail
  145. Typo fix — shunz / detail
  146. Tried PTC for IBLSplitAmpLag captured transition case — shunz / detail
  147. Further simplified amplification equation at hubtrace — shunz / detail
  148. Added grid and initial solution files — shunz / detail
  149. minor cleanup — shunz / detail
  150. added hessian to Joukowski solution — allmaras / detail
  151. bug fix in Joukowski test — allmaras / detail
  152. Minor edit — shunz / detail
  153. Refactored a case — shunz / detail
  154. Fixed calls to jacobianTranspose of daisy-chained algebraic equation set — shunz / detail
  155. Cleanup — shunz / detail
  156. minor refactoring — shunz / detail
  157. minor edit to running case — shunz / detail
  158. Refactored printed normed reisudals when line-search fails. — shunz / detail
  159. Refactored running case — shunz / detail
  160. Minor cleanup — shunz / detail
  161. Minor fix — shunz / detail
  162. Refactored uncoupled IBL case and added pyrite file — shunz / detail
  163. Fixed HDG continuous implementation.  Reverted to Var(delta, A, G) to not hacking scaling delta and A.  Cleaned up some system tests — shunz / detail
  164. Refactored two test cases — shunz / detail
  165. Added Hk lower limit check when checking state validity for IBLUniField with correlation closures — shunz / detail
  166. Added pyrite check file.  Refactored test cases and enabled PTC on one of them. — shunz / detail
  167. Fix pyrite check — shunz / detail
  168. Fixed undefined variables — shunz / detail
  169. Updated a pyrite file to be consistent with the latest settings in IBLUniField — shunz / detail
  170. Deleted a redundant case — shunz / detail
  171. added some commented out hack for fully turbulent BL simulation with IBLUniField — shunz / detail
  172. Updated pyrite file — shunz / detail
  173. Added exceptions as safe guards — shunz / detail
  174. cosmetic refactoring — shunz / detail
  175. cosmetic refactoring — shunz / detail
  176. Added a pyrite file and changed test file name — shunz / detail
  177. turned on set IBL dofs for p=0 for DsThG — shunz / detail
  178. Dumped singular jacobian when UMFPACK finds it — shunz / detail
  179. Refactored system test cases — shunz / detail
  180. Using a less conservative initial CFL for PTC in a test case — shunz / detail
  181. Refactored system test case — shunz / detail
  182. Added some auxiliary functions for system test cases — shunz / detail
  183. Added some debugging options — shunz / detail
  184. Minor refactoring — shunz / detail
  185. Simplified upwind flux in IBL to improve code reuse — shunz / detail
  186. Commented out hacks.  Added minor guards.  Dumped matrix when UMFPACK linear solve fails. — shunz / detail
  187. Laminar-turbulent blending works for Eppler 387 now.  Turned on G limiting in updateFraction — shunz / detail
  188. Cleaned up and refactored projection to Qauxi — shunz / detail
  189. Removed redundant TopoDim templates following Hugh's recent updates — shunz / detail
  190. playing with numerical flux and nt growth rate in laminar-turbulent blending formulation — shunz / detail
  191. Playing with various grid-dependent laminar-turbulent blending strategies — shunz / detail
  192. minor cleanup — shunz / detail
  193. Use value instead of reference since equivalence is checked instead of identity — shunz / detail
  194. Added output — shunz / detail
  195. Tweaked LF flux dissipation coefficient a bit.  Modified lag source term to prevent ctau to drop with ctau_Tinit after reaching its peak.  Hacking grid dependent blending.  Left system test case unchecked for the moment — shunz / detail
  196. Added Hs derivatives with unit tests.  Fixed typos in closure unit tests — shunz / detail
  197. Abstracted Re_theta calculation — shunz / detail
  198. Added Roe flux based on arithmetic average state — shunz / detail
  199. Added class for setting qaux field from file — shunz / detail
  200. Typo fix — shunz / detail
  201. Minor refactoring — shunz / detail
  202. Output blended IBL quantities — shunz / detail
  203. Added an uncoupled IBL case — shunz / detail
  204. Added qinif initialization to a shared file for setting up IBL case — shunz / detail
  205. Using qinf initialization from a shared file — shunz / detail
  206. Refactored Roe flux for IBL — shunz / detail
  207. Added entropy fix — shunz / detail
  208. Just hacking around.  The hacky stuff are turned off — shunz / detail
  209. Reformulated DG-IBL interface flux and finally fixed solution oscillation in transition cases.  Saved other miscellaneous updates — shunz / detail
  210. cosmetic changes (with hacks being commented out) — shunz / detail
  211. Normalize KE equation by q^2 — shunz / detail
  212. editted comments — shunz / detail
  213. Use pde fluxAdvective function to calculate outflow flux at Hubtrace boundary — shunz / detail
  214. cleaned up some hacks — shunz / detail
  215. minor cleanup — shunz / detail
  216. Accidentally messed up blended source term.  Restore it now. — shunz / detail
  217. Stashed some intermediate edits — shunz / detail
  218. Fixed the numerical flux of IBL momentum equations to eliminate solution jumps and/or oscillations.  Also cleaned up temporary hacks. — shunz / detail
  219. Make intermittency length scale a parameter in the transition model.  Cleaned up old hacks in in PDEIBLSplitAmpLag2D — shunz / detail
  220. More cleanup — shunz / detail
  221. minor edits — shunz / detail
  222. Disable search for boost-cmake; otherwise, runs into conflicts with FindBoost.  Need to resolve this if using boost-cmake in the future — shunz / detail
  223. Minor cleanup following last merge commit — shunz / detail
  224. Minor fixes to keep up with changes in the main branch — shunz / detail
  225. Add pyrite check on E387 airfoil transition separation bubble case — shunz / detail
  226. Update Solve2D_Coupled4x4_IBLSplitAmpLag_CorrelationClosure_CapturedTransition_PTC_btest.cpp — shunz / detail
  227. Cleaned up the numerical flux options in Qauxi projection.  All three numerical fluxes produce similar well-behaved results.  Add a sandbox case — shunz / detail
  228. working on advective field case... — cfrontin / detail
  229. asdfasdf — cfrontin / detail
  230. working on the advective field and it's broken LOL — cfrontin / detail
  231. fix mpi dg — cfrontin / detail
  232. trying to figure out idiosyncracy — cfrontin / detail
  233. cont'd — cfrontin / detail
  234. cont'd pt. ii — cfrontin / detail
  235. name fix — cfrontin / detail
  236. oopsie — cfrontin / detail
  237. working on random field — cfrontin / detail
  238. updated random fields, should be working but untested. — cfrontin / detail
  239. unit tests for adjoint — arthuang / detail
  240. fixes to compute AR etc. — hcarson / detail
  241. Fix for EPIC 2D without geometry — galbramc / detail
  242. jenkins fix, holdover code. — cfrontin / detail
  243. adding block pivoting to ilu — arthuang / detail
  244. a VMSDBR2 version of the DeltaWing Chain toy — hcarson / detail
  245. Enable static condensation with MKL — galbramc / detail
  246. Missed a static condensation step — galbramc / detail
  247. Another MKL static condensation fix — galbramc / detail
  248. Relaxed tolerance — galbramc / detail
  249. a VMSDBR2 Double BL, also lining up the 3 so that they are the same. HOWEVER, Seems to be something very wrong with plain VMSD, the adapt looks crap and the error is enormous.... — hcarson / detail
  250. Updates for latest refine — galbramc / detail
  251. urop fix? — cfrontin / detail
  252. jenkins fix, odds and ends. — cfrontin / detail
  253. added 2D+T VMSD AD case. — cfrontin / detail
  254. minor edit — shunz / detail
  255. refactored the new PDE IBL class and added unit tests — shunz / detail
  256. fixed LF flux — shunz / detail
  257. Relocated blended intermittency to PDE class.  Added unit tests. — shunz / detail
  258. Added unit tests to VarInterpret — shunz / detail
  259. Fixed intermittency usage in auxi equation — shunz / detail
  260. refactored intermittency calculation calling signature across different variants of IBL formulations — shunz / detail
  261. Fixed type — shunz / detail
  262. Refactored unit tests to keep up with updates in the thickness class — shunz / detail
  263. Cleaned up manifold interface integrand implementation.  Minor type corrections for unit tests involving Surreal types. — shunz / detail
  264. Fixed ping tests by adjusting the reference solution and step size — shunz / detail
  265. Refactored  PDEIBLSplitAmgLag2D default flux and ctau_min.  Added pyrite check files — shunz / detail
  266. updated pyrite files — shunz / detail
  267. Refactored IBL solution file reader.  Cleaned up system tests for various IBL formulations — shunz / detail
  268. Removed IO file clutter — shunz / detail
  269. Added variable data constructors.  Fixed types.  File cleanup — shunz / detail
  270. Fixed IBL solution reader usage — shunz / detail
  271. Recovered a system test on IBLUniField — shunz / detail
  272. Cleaned up system tests — shunz / detail
  273. Fixed IBL solution reader usage — shunz / detail
  274. Fixed duplicate symbols by inline.  Added a missing pyrite check file — shunz / detail
  275. Relaxed pyrite tolerance.  Fixed unit tests for IBL soluton file reader — shunz / detail
  276. Suppressed file output for Jenkins — shunz / detail
  277. Suppressed one more file output for Jenkins. — shunz / detail
  278. Fixed unused variable — shunz / detail
  279. Relaxed pyrite tolerances for gnu — shunz / detail
  280. Subtle typo in pyrite filename — shunz / detail
  281. Relaxed tolerances for intel compilers — shunz / detail
  282. Relaxed pyrite tolerance.  Added explicit instantiation to fix linker error — shunz / detail
  283. Relaxed tolerance. Fixed timeout on Jenkins — shunz / detail
  284. Relaxed pyrite tolerances — shunz / detail
  285. relaxed tolerance on d/dxdy test — allmaras / detail
  286. Replace Joukowski q1 grid — galbramc / detail
  287. coverage improvement — cfrontin / detail
  288. hotfix — cfrontin / detail
  289. quick fix — cfrontin / detail
  290. Attempt to use parallel MKL (does not work yet). Other small cleanups. — galbramc / detail
  291. Added cartesian table lookup for PorusMedia SPE calculations — galbramc / detail
  292. Use atlas blas on rhel7 — galbramc / detail
  293. 2d+t hex solve patch. — cfrontin / detail
  294. belated nomenclature fix — cfrontin / detail
  295. Consistent delete — galbramc / detail
  296. VMSDBR2 3D+T additions. — cfrontin / detail
  297. added squarechannel vmsd br2 changes — cfrontin / detail
  298. General PETSc verson on macOZ for jenkins — galbramc / detail
  299. Suppress tetgen CMake warning. Relax tolerance for macOS — galbramc / detail
  300. Allow MKL as BLAS library. Update macOS PETSc. Fix tolerance. — galbramc / detail
  301. Add option to dump per rank matrix market file from PETSc — galbramc / detail
  302. 1st crack at SPE10 test case; compiles but errors out when run; — allmaras / detail
  303. unit tests for PorosityModel_CartTable — allmaras / detail
  304. unit tests for Porosivity and Permeability — allmaras / detail
  305. Fix for PETSc matrix market dump — galbramc / detail
  306. bug fixes in 2-phase porous flow classes/tests; added CartTable unit tests for PDETwoPhase2D — allmaras / detail
  307. updated SPE10 test case to include lookup poro/perm tables; BCs now complaining about CartTable — allmaras / detail
  308. reverted to original functionality on fluxAdvectiveUpwind: no-op rather than developer exception; — allmaras / detail
  309. added "#include <fstream>" in lookup table tests — allmaras / detail
  310. SPE10 testcase: added avro include files and check on SANS_AVRO — allmaras / detail
  311. cppcheck fixes — galbramc / detail
  312. Jenkins updates — galbramc / detail
  313. Added Kyle Anderson k-ordering to PETSc — galbramc / detail
  314. Another jenkins update — galbramc / detail
  315. Fix warnings — galbramc / detail
  316. vmsd sip -> vmsd br2 in sandbox — cfrontin / detail
  317. Update CMake build to Nlopt 2.6.1 — galbramc / detail
  318. SPE10 testcase: added needed instantiations for BC parameters, algebraic eq set, error estimates — allmaras / detail
  319. more vmsd sip -> vmsd br2 in sandbox — cfrontin / detail
  320. Fix k-ordering — galbramc / detail
  321. Fix for k-ordering with BAIJ PETSc matrices — galbramc / detail
  322. fixed typo in comments; no change in functionality — allmaras / detail
  323. SPE10 testcase: fixed typos/bugs in instantiations — allmaras / detail
  324. SPE10: changed avro check to BOOST_FAIL, so code always compiles even if USE_AVRO not defined — allmaras / detail
  325. Implemented refine 2D API interface — galbramc / detail
  326. SPE10: generalized output functional to sum over a vector of outflow wells — allmaras / detail
  327. SPE10: added multiple wells to output functional — allmaras / detail
  328. SPE10: trying to achieve successful compile when SANS_AVRO not defined — allmaras / detail
  329. SPE10: added checks on porosity & permeability table lookups — allmaras / detail
  330. Upgrade ccache version — galbramc / detail
  331. vmsd -> sip again — cfrontin / detail
  332. 2D refine updates to swork with CAD. Not done yet. — galbramc / detail
  333. Fix compile error — galbramc / detail
  334. Suppress some cppcheck warnings — galbramc / detail
  335. Tweak for jenkins Commit script — galbramc / detail
  336. less sharp exact soln, BR2 not SIP — cfrontin / detail
  337. and output fix — cfrontin / detail
  338. eliminated option to use single/scalar source to initialize OutputTwoPhase2D_Flowrate; — allmaras / detail
  339. added test for 1x1 constant lookup table — allmaras / detail
  340. typo fix in output functional source class name (SourceClass -> SourceOutflowClass) — allmaras / detail
  341. another intel suppression for valgrind — galbramc / detail
  342. cppcheck suppression — galbramc / detail
  343. Added a scaling factor to PermeabilityModel2D_CartTable to fix units in SPE10 case. Added rock compressibility to PorosityModel_CartTable, and updated unit tests. Added phi, Kxx, and Kyy as derived quantities to PDETwoPhase2D for visualization. Added table look-up files with homogeneous data for SPE10. — savithru / detail
  344. Fixed unused variable warning — savithru / detail
  345. forcing function adjustment... not improved :( — cfrontin / detail
  346. Update for latest refine — galbramc / detail
  347. SingularException destructor instantiation — galbramc / detail
  348. Rename BCEulermitAVDiffusion to BCEulermitAVSensor since the name makes more sense — blsc / detail
  349. First pass at including artificial viscosity model from Holst (2020) — blsc / detail
  350. GCC9 caught some unitialized data — blsc / detail
  351. A few bugs — blsc / detail
  352. Unit tests and associated bug fixes — blsc / detail
  353. Fix library ordering for HSM — galbramc / detail
  354. Updated gcc warning regex — galbramc / detail
  355. Increase timout times — galbramc / detail
  356. Slight correction to refine unit test — galbramc / detail
  357. Updates for refine incliding 2D triangle hack. Still need help from Mike. — galbramc / detail
  358. Dissable refine 2D test — galbramc / detail
  359. Refine now works in 2D — galbramc / detail
  360. Add restart interface for refine — galbramc / detail
  361. Increase timeour for refine2D tests — galbramc / detail
  362. Use MPI_sleep for avro execution — galbramc / detail
  363. Only write EGADS file from one processor and reduce iterations in refine2D_btest — galbramc / detail
  364. Add missing include — galbramc / detail
  365. Relax refine timie a bit more — galbramc / detail
  366. Add missing link library — galbramc / detail
  367. refine2D with EGADS still does not quite work. — galbramc / detail
  368. Fix for parallel 2D refine — galbramc / detail
  369. One more refine fix — galbramc / detail
  370. Only remove files on the rank 0 processor — galbramc / detail
  371. Warning fixes — galbramc / detail
  372. Fix up Box Tet WakeCut for adjoint — galbramc / detail
  373. Added Ismail-Roe entropy conservative flux (with optional entropy fix based on Harten) in 2D. Unit tested to ensure: primal and entropy consistency for the entropy conservative formulation, primal consistency and entropy dissipation for version with entropy fix. Extension to RANSSA NOT implemented. — blsc / detail
  374. Added header: src/pde/NS/Roe.h to src/pde/NS/IsmailRoe.h to it can access datatype: RoeEntropyFix — blsc / detail
  375. Typo fix in enum RoeEntropyFix: eIsmailRoeEntopyNeutral -> eIsmailRoeEntropyNeutral — blsc / detail
  376. Added SPE10 permeability datasets with reduced contrast ratios — savithru / detail
  377. Updated quarter five spot case to use avro — savithru / detail
  378. lorenz building, not converging. need unit tests. — blsc / detail
  379. in progress... — blsc / detail
  380. lorenz in progress, not converging, seems to need stabilization. — blsc / detail
  381. working on vmsd. — blsc / detail
  382. added DG, broken. now VMSD and DGBR2 are both broken and CG is unstable :) — blsc / detail
  383. more of the same. — blsc / detail
  384. made some fixes, fem of lorenz seems to be working (w/ 4M elements...) — blsc / detail
  385. trying to figure out what's wrong — blsc / detail
  386. unit test addition.. — blsc / detail
  387. hmm looking for valgrid shit now. — blsc / detail
  388. added exact solution for alpha=0 case. — blsc / detail
  389. configured for convergence test, convergent. — blsc / detail
  390. output tricks — blsc / detail
  391. working on homotopy pde — blsc / detail
  392. for marshall — blsc / detail
  393. Some progress for BCHomotopy — blsc / detail
  394. homotopy in progress (still) — blsc / detail
  395. on the way to a block 2x2 version of htc... — blsc / detail
  396. slow but steady. — blsc / detail
  397. on the curve between the easy solution and the hard one — blsc / detail
  398. bob loblaw law blog — blsc / detail
  399. homotopy might be working might be leaking might be a figment of my imagination. — blsc / detail
  400. fieldbase uninitialized data fix. — blsc / detail
  401. homotopy running but breaking for chaos :( — blsc / detail
  402. added dumps — blsc / detail
  403. fixed homotopy bug i think. — blsc / detail
  404. added adaptive stepping to homotopy. — blsc / detail
  405. ready for ben — blsc / detail
  406. state of the art — blsc / detail
  407. small changes. — blsc / detail
  408. Removed PDE template from BCLorenz since it was no longer needed. Generalized the new homotopy integrand so it can be applied to Real and VectorS PDE::ArrayQ types. Updates required adding move construction and move assignment operator to VectorBlock_2 to prevent warnings about using implicit constructors under g++9. Propogated the required changes to unit test and sandbox cases. — blsc / detail
  409. Statically condensed VMSD with homotopy: Updated the jacobian functions in the the HTC algebraic equation set, added logic for static condensation to Block 2x2 matrix interface with UMFPACK, and also had to expose the types of the vectors in VectorBlock_2. Also updated the Homotopy logic to be more robust, which mostly consists of making sure steps taken in the predictor phase are valid. — blsc / detail
  410. Added ability to pass q and qp into source term individually for VMSDBR2. This is needed for some of the resolution sensors I am experimenting with for shock capturing. This required an additional source function to be added to PDEs that takes q, qp, gradq, and gradqp. Currently, this new function forwards (q+qp) and (gradq+gradqp) to the original source function. Unit tests have been added to test consistency of this new source term. — blsc / detail
  411. Added new boundary condition: BCTypeFullStateRadialInflow_mitState. This is a FullState_mitState style boundary condition, except velocity magnitude is specified. The direction is then calculated as radially outward from an origin at (0,0). — blsc / detail
  412. Added PDESourceOnly2D which implements a pde q - a = 0. This is for use as the auxiliary equation for Homotopy continuation. Unit tests added to applying this PDE to adevction diffusion, Euler and Euler with artificial diffusion. Also found that the jacobianMasterState and jacobianFluxAdvectveTime functions were reversed for the sensor PDE. This has been fixed and unit tests updated. — blsc / detail
  413. Setting up a bump in a subsonic inviscid flow. Now verbose enables / disables all console output of the halving linesearch. Also added some extra function to PDEEuler2D to forward calls that have params. — blsc / detail
  414. Added sourceCoarse and sourceFine function calls to VMSDBR2, which are source terms weighted against the coarse and fine space test functions respectively. For the most part these forward calls to the source function in the PDE. These are required because VMSD does not have a unique solution for the PDE q - a = 0 if a is a constant. Since this is the case in the SourceOnly PDE, that PDE now solves (\bar{q} - a) = 0, and q' = 0. — blsc / detail
  415. Setting up RadialShock problem using VMSDBR2 and Homotopy. This required instantiating objects relating to the Block 2x2 linear algebra for PDEs of dimension 5. It also required adding the new source functions to the Sensor PDE. — blsc / detail
  416. Renamed eLaplaceViscosity to eLaplaceViscosityEnthalpy in enum EulerArtViscosity. This is a more descriptive name for this option: artificial diffusion is applied to the gradient of total enthalpy (not total internal energy as a pure Laplacian operator would suggest). Now the option eLaplaceViscosityEnergy can be added to the enum EulerArtViscosity to describe the artificial diffusion being applied to the conservation variables. — blsc / detail
  417. Upgraded to latest AFLR — galbramc / detail
  418. Added eLaplaceViscosityEnergy to enum EulerArtViscosity. This applies a Laplacian operator to the conservation variable gradient (i.e. energy gradient not enthalpy gradient). System tests have been added to ensure that the calculation is correct for Euler2D and RANSSA2D PDEs. — blsc / detail
  419. Fixed two bugs highlighted by Jenkins. 1) PDELorenz was using abs on a Real. 2) Several lines in SolutionFunction_Euler2D.h were too long. — blsc / detail
  420. Look for Real Time library for AFLR — galbramc / detail
  421. Fix for last commit — galbramc / detail
  422. A few AFLR fixes — galbramc / detail
  423. Previous commits overwrote some updates to the PETSc interface, so had to revert to commit 8fa5bcb008f4c19ec223d6ebfa628f6d4d9354cd for those files. Also updated files that failed vera checks. — blsc / detail
  424. Instantiations for Block2x2 systems for a PDE of 5 equations were missing from MKL. Also, the version of UMFPack on Ubuntu 12.04 does not support the new exception types, so have reverted src/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver.cpp back to commit 45d3cd53036a51bccf943d9c5097544bd220d8f8 — blsc / detail
  425. Relaxed tolerances on JacobianCell_VMSD_BR2_AD_btest for intel. Added #ifdef protection on the new UMFPACk error flags for older versions of UMFPack (pre 5.5) — blsc / detail
  426. Updated BuildBoost to Boost 1.72 — galbramc / detail
  427. Updated AFLR to 16.30.11. Lots of cppcheck fixes. — galbramc / detail
  428. Add missing include — galbramc / detail
  429. Fixes for AFLR4 farfield mesh generation — galbramc / detail
  430. A few nightly fixes — galbramc / detail
  431. Add continuousGlobalMap for LIP solvers — galbramc / detail
  432. Fix the last fix — galbramc / detail
  433. Use CMake python when building boost — galbramc / detail
  434. Fix for gold linker with MKL — galbramc / detail
  435. Some more nightly fixes — galbramc / detail
  436. One more nightly fix — galbramc / detail

#257 (Dec 7, 2019, 1:52:07 AM)

  1. unit tests for adjoint — arthuang / detail
  2. Fix for EPIC 2D without geometry — galbramc / detail
  3. adding block pivoting to ilu — arthuang / detail
  4. a VMSDBR2 version of the DeltaWing Chain toy — hcarson / detail
  5. Enable static condensation with MKL — galbramc / detail
  6. Missed a static condensation step — galbramc / detail
  7. Another MKL static condensation fix — galbramc / detail
  8. Relaxed tolerance — galbramc / detail
  9. Updates for latest refine — galbramc / detail

#256 (Nov 16, 2019, 1:52:07 AM)

  1. Updates to DGBR2 RANS Joukowski — arthuang / detail
  2. mod to wbwt solve — arthuang / detail
  3. mods to toy — arthuang / detail
  4. longer time scale — arthuang / detail
  5. mods — arthuang / detail
  6. change filenames — arthuang / detail
  7. unit test — arthuang / detail
  8. Delta wing updates — galbramc / detail
  9. sandbox tweak — arthuang / detail
  10. change loops — arthuang / detail
  11. tweaks — arthuang / detail
  12. mod flat plate — arthuang / detail
  13. changed nThread back to 2 — arthuang / detail
  14. a little bit faster — arthuang / detail
  15. should be a little faster? — arthuang / detail
  16. adding u' on boundaries, new SIP parameter — arthuang / detail
  17. weakening nitsche parameter — arthuang / detail
  18. minor changes — arthuang / detail
  19. put some estuff back — arthuang / detail
  20. commit sandbox case — arthuang / detail
  21. couple more tweaks — arthuang / detail
  22. updating linear VMSD — arthuang / detail
  23. adding vmsd0 sandbox — arthuang / detail
  24. playing with adjoint SIP order — arthuang / detail
  25. trying to get vmsd0 up — arthuang / detail
  26. BR2 is not working yet — arthuang / detail
  27. vmsd w BR2 is working.. primal and adjoint look ok? error estimates questionable — arthuang / detail
  28. fixed unintializd data — arthuang / detail
  29. error estimates working! — arthuang / detail
  30. stuff is working.. pushing to hypersonic — arthuang / detail
  31. pushing to laptopt — arthuang / detail
  32. add sandbox case — arthuang / detail
  33. putting pseudotime on q' field — arthuang / detail
  34. hacks to do PTC on q' field — arthuang / detail
  35. should be working? — arthuang / detail
  36. updates to use pseudotime on q' field — arthuang / detail
  37. vmsdbr2 RANS solve — arthuang / detail
  38. check nonlinear residuals separately — arthuang / detail
  39. fixed vera — arthuang / detail
  40. boundary lifting operators working... but why is it so slow? — arthuang / detail
  41. speedups for VMSD — arthuang / detail
  42. adding pseudotime function hooks to VMSD0 — arthuang / detail
  43. oh shoot VMSD0 is working? — arthuang / detail
  44. whoops need some stuff back — arthuang / detail
  45. reverting a bunch of things, bug fix for the ptc — arthuang / detail
  46. no idea why this works.. must be something to do with eta? — arthuang / detail
  47. q' is on the boundaries and that seems to work better. slow though! — arthuang / detail
  48. playing with eta — arthuang / detail
  49. found nasty bug — arthuang / detail
  50. VMSDflatplate — arthuang / detail
  51. parallel bug — arthuang / detail
  52. RANS test cases — arthuang / detail
  53. joukowski cases — arthuang / detail
  54. darmo wants more alfa — arthuang / detail
  55. ok last tweak — arthuang / detail
  56. hemisphere cylinder... lets see how this goes — arthuang / detail
  57. commented out developer exception for reflectBC — arthuang / detail
  58. tuning down stabilization to reasonable levels — arthuang / detail
  59. ok i think things are working... — arthuang / detail
  60. edits to epic script — arthuang / detail
  61. sandbox tweaks — arthuang / detail
  62. pushing to hypersonic again.. some bug fixes for teh non-br2 — arthuang / detail
  63. different way to use memory? — arthuang / detail
  64. hemisphere cylinder fixed grid test case — arthuang / detail
  65. vmsd hemisphere-cylinder — arthuang / detail
  66. tweaks to hemispherecylinder case — arthuang / detail
  67. revert pseudotime not to use qpfld (for memory savings) — arthuang / detail
  68. added extra dual consistency term to boundary — arthuang / detail
  69. finished up extra BC term — arthuang / detail
  70. tweak pseudotime to pass integrand into VMSD Jacobian (saves memory) — arthuang / detail
  71. whoops forgot one — arthuang / detail
  72. hemisphere cylinder is working! — arthuang / detail
  73. modifications to hemisphere-cylinder — arthuang / detail
  74. playing w gmres — arthuang / detail
  75. tweaks to sandbox — arthuang / detail
  76. added restart to 3d hemishpere cylinder — arthuang / detail
  77. ojeda adapts — arthuang / detail
  78. dg adapt ojeda change projector — arthuang / detail
  79. dg hemisphere-cylinder — arthuang / detail
  80. corner flat plate adapts — arthuang / detail
  81. run mods for flat plate — arthuang / detail
  82. forgot cmakelist — arthuang / detail
  83. switch flat plate side — arthuang / detail
  84. hypersonic sandbox — arthuang / detail
  85. add corner flat plates — arthuang / detail
  86. fixes to work with hugh's push, also a little fixup for pseudotime — arthuang / detail
  87. get rid of unneeded jacobians — arthuang / detail
  88. most things compile..? — arthuang / detail
  89. maybe this will get through Jenkins??? — arthuang / detail
  90. vera bracket thing — arthuang / detail
  91. change btest name — arthuang / detail
  92. another btest name change — arthuang / detail
  93. using new boundary lifting field to save memory — arthuang / detail
  94. forgot some files — arthuang / detail
  95. fixed up unit tests? — arthuang / detail
  96. Fixes for FieldLift_DG_BoundaryTrace — galbramc / detail
  97. propagating to 3D — arthuang / detail
  98. added fieldlocal for lifted boundarytrace — arthuang / detail
  99. Fix for FieldLiftBoundary_Local — galbramc / detail
  100. seems like things are working? — arthuang / detail
  101. tweak for volumes — arthuang / detail
  102. found uninitialized data? — arthuang / detail
  103. last btest? — arthuang / detail
  104. add new stabilized Galerkin HC solve — arthuang / detail
  105. added dofweighted norm to stabilized galerkin — arthuang / detail
  106. i think thats it for the unit tests? — arthuang / detail
  107. supg ojeda — arthuang / detail
  108. turn off file dump — arthuang / detail
  109. updating non-static condensed versions of VMSD — arthuang / detail
  110. forgot a file — arthuang / detail
  111. Minimum 4x4 mesh for ErrorEstimateOrder_2D_CG_Nodal_Triangle_AD_btest — galbramc / detail
  112. Fix uninitialized test data — galbramc / detail
  113. Added a Field/Basis equivelncy test for VMDBR2 — galbramc / detail
  114. GLS should be a bit faster — arthuang / detail
  115. some tweaks to gls — arthuang / detail
  116. tweaks to the sandbox case too — arthuang / detail
  117. Nightly fixes — galbramc / detail
  118. added velocity squared output — arthuang / detail
  119. forgot curly brace — arthuang / detail
  120. ok now it should be right — arthuang / detail
  121. ojeda bump update to V2 output — arthuang / detail
  122. missed a /rho — arthuang / detail
  123. Remove EPIC projection for Q1 geometry — galbramc / detail
  124. Added LGMRES PETSc option — galbramc / detail
  125. Logic fix for EPIC when using Q1 grids — galbramc / detail
  126. one bug found? — arthuang / detail
  127. fixed bubble mode issue for boundary outputs.. turned off LO contribution to boundary error for now. still stuff to figure out — arthuang / detail
  128. don't project adjoint — arthuang / detail
  129. added missing LO volume term in boundary error estimates — arthuang / detail
  130. updates to solverinterface to subtract off p LO — arthuang / detail
  131. get rid of whitespace — arthuang / detail
  132. fixing up unit test — arthuang / detail
  133. Fix for nightly — galbramc / detail
  134. Added a more unit tests. Still a bug in the linearization — galbramc / detail
  135. Another attempt at nightly fix — galbramc / detail
  136. found bug in uncondensed Jacobian — arthuang / detail
  137. Cleaned up some unnecessary includes — galbramc / detail
  138. change btest name — arthuang / detail
  139. add static condense equivalency unit test — arthuang / detail
  140. got rid of unused typedefs — arthuang / detail
  141. fixed uninitialized data — arthuang / detail
  142. Solution transfer error check — galbramc / detail

#254 (Oct 26, 2019, 1:52:09 AM)

  1. added expanding spherical wave trueoutput via numerical integration in wolfram — cfrontin / detail
  2. mega'd up the Adapt2D RAE case — cfrontin / detail<