Changes

#269 (Oct 10, 2020, 1:52:09 AM)

First pass at structuring TCNE pde, a little messy — blsc / detail
TCNE stuff — ksabo / detail
relocate QauxvInterpret forward declaration in prep for 3D stuff — shunz / detail
Added basic stuff for 3D IBL — shunz / detail
Minor cleanup — shunz / detail
Initial pass on PDEIBL3D — shunz / detail
Filled in 3D IBL closure with fully 3D components set to zero — shunz / detail
Added BCNone for IBL3D — shunz / detail
added a working version of sandbox case for IBL3D — shunz / detail
Added a sheet grid of triangles in 3D for IBL3D — shunz / detail
Added instantiation — shunz / detail
Intermediate commit — shunz / detail
Working on integrands for first 3D IBL case — shunz / detail
More fixes to integrand classes for IBL3D — shunz / detail
Fixed instantiations for IBL3D — shunz / detail
Add explicit instantiations and fix typos in closure class — shunz / detail
Initial version of local Cartesian basis construction for 3D IBL — shunz / detail
Minor cleanup — shunz / detail
Fix constuction of q1 and q2 vectors in case of stagnation flows — shunz / detail
Add velocity gradient calculation in cell integrand of 3D IBL — shunz / detail
Refactor and add a 2D stagnation flow test case — shunz / detail
Add a 3D quad grid — shunz / detail
Update cmake list for unit grid test — shunz / detail
Fix typo in 3D quad sheet grid — shunz / detail
fix bug in qauxv gradient calculation in 3D IBL cell integrand — shunz / detail
Fix the scale and dimension of dissipation integral in 3D integral — shunz / detail
fix a typo in thickness identity — shunz / detail
Add more options to 3D IBL stagnation flow case, including quad grid, solution initialization, — shunz / detail
one more bug fix in cell integrand for 3D IBL — shunz / detail
Bugfix in calculation of trace unit normal vector for area cells in 3D — shunz / detail
Add Nishida's crossflow closure. Add pyrite check of stagnation flow case for 3D IBL. Minor addition for debugging in PDEIBL3D — shunz / detail
fix dependents of refactoring of GetSolnDofCell_IBL — shunz / detail
Add a 3D flat plate source panel method but haven't tested yet — shunz / detail
intermediate commit: minor clenaup and add guards. — shunz / detail
intermediate commit: working on 3D coupled IBL for torpedo cass — shunz / detail
add 3x3 equation system — shunz / detail
typo fix. add partial instantiations for system 3x3 vector and matrix types — shunz / detail
add linesearch data type for 3x3 equation system — shunz / detail
add missing include — shunz / detail
intermediate commit: fix many compiling errors in the way of running torpedo case for IBL3D. switching computer to continue the work... — shunz / detail
refactor projection to Qauxi — shunz / detail
add interior trace integrand for projection onto Qauxi — shunz / detail
minor fix — shunz / detail
add instantiations for IBL3D torpedo case — shunz / detail
add instantiations for coupled IBL3D — shunz / detail
remove unnecessary assert — shunz / detail
fix for coupled IBL case to compile and run — shunz / detail
fix uninitialized dummy DOFs — shunz / detail
fix setDOFFrom in Qauxv 3D (missing q_y previously) — shunz / detail
Coupled 3D IBL case converged on some simple variants of the torpedo case: linear and mildly nonlinear radial velocity distribution with attached laminar BLs — shunz / detail
Tried triangle grid as well: fine on radially linear velocity distribution but couldn't converge on a more nonlinear case — shunz / detail
cleaned up unused stuff — shunz / detail
refactor SetIBLoutputCellGroup to accommodate both 3D and 2D IBL — shunz / detail
remove outdated include — shunz / detail
more refactoring of SetIBLoutputCellGroup for 3D IBL. working progress. switching computer — shunz / detail
intermediate commit. switching computer. — shunz / detail
enable tecplot output for 3D IBL — shunz / detail
added PyDict options for Verbose and writeMarketMatrix for UMFPACK — allmaras / detail
add full-state BC for IBL3D with corresponding boundary trace integrand. verified on an uncoupled Blasius case — shunz / detail
add a coupled IBL3D Blasius case — shunz / detail
implement PTC for coupled IBL 3x3 system — shunz / detail
add commented-out stuff for turning off laminar amplification and lag equations in IBL3D — shunz / detail
fix typo in commented-out stuff — shunz / detail
enable rotated mesh for IBL3D torpedo case — shunz / detail
set up a torpedo with grid aligned with xy axes. turned off laminar amplification and lag equations [need to be brought back after testing purely laminar BLs] — shunz / detail
minor change to test case — shunz / detail
minor refactoring on Blasius inflow BC params — shunz / detail
rename test cases — shunz / detail
speed up panel-related jacobian calculation using cached influence matrix in place of surrealized qauxifld — shunz / detail
add jacobian timing for refactoring purpose — shunz / detail
add similar (to DBL3) Falkner-Skan inflow bc for IBL3D with non-constant inflow state. set up a tornado case with rotated xy grid to compare with DBL3 — shunz / detail
minor refactoring of test cases — shunz / detail
remove trivial zero z velocity component to speed up panel method — shunz / detail
minor refactoring — shunz / detail
typo fix — shunz / detail
precompute inviscid velocity for panel, which resulted in O(10) speedup in related residual calculation. fix DOF indexing in residual/jacobian precomputation — shunz / detail
define macro to comment off some lines for timing/refactoring — shunz / detail
minor comments — shunz / detail
add ping test for coupled IBL in 3x3 block system — shunz / detail
attempt to mirror tets in XField3D_Box_Tet_X1_WakeCut — allmaras / detail
reverted to original prism-split coding; remainder of code is hard-coded for the — allmaras / detail
fix typo in Cf2 closure, although it didn't change the torpedo case results much — shunz / detail
Fix dot for VectorBlock — galbramc / detail
added PyDict control of wake & Kutta Nitsche parameters — allmaras / detail
Added test of sourceCoarse and sourceFine for RANSSA with artificial viscosity. — blsc / detail
Added missing sourceCoarse and sourceFine functions from pressure gradient sensor and added unit test — blsc / detail
added PyDict solve check option to UMFPACK; currently commented out actual check — allmaras / detail
Fixes for checking the UMFPACK solve — galbramc / detail
Missed adding PDEEulermitAVDiffusion2D.h to the commit. This file has specialized versions of sourceCoarse and sourceFine for a param that is a H-tensor and distance function. — blsc / detail
add a wall term to dissipation relation of Nishida's closure, although it didn't affect things much — shunz / detail
add a test case of fx67-k-170 airfoil — shunz / detail
minor edit to output filenames at convergence failures — shunz / detail
resolve merge conflict — shunz / detail
changed default flux of IBL to LF flux — shunz / detail
add a test case for drag polar — shunz / detail
ran drag polar cases — shunz / detail
refactored reference speed in transition model — shunz / detail
typo fix — shunz / detail
rename working directory — shunz / detail
refator characteristic speed for PTC — shunz / detail
refator characteristic speed for PTC — shunz / detail
Add unit tests demonstrating that the step matrix calculation is stable to scaling — hcarson / detail
update pyrite files — shunz / detail
refactor 3D IBL closure API to allow for alternative closure models — shunz / detail
save 3D closure relations in a separate header — shunz / detail
add neural net closure for 3D IBL — shunz / detail
run drag polar on finer grids — shunz / detail
switch to run on acdl desktop — shunz / detail
fix memory leak warning caused by accessing index -1 — shunz / detail
minor update — shunz / detail
mucking with PETSc for IBL3 — shunz / detail
instantiate MKL_PARDISO solver for matrix block 3x3 — shunz / detail
tried MKL_PARDISO solver for IBL3 — shunz / detail
Adding test that Explicitly calculating the step from the metric directly is not unstable. Cases in 2D and 3D, showing stability to an AR of 2^10 in 3D, and 2^64 in 2D. — hcarson / detail
minor typo fix — shunz / detail
fix formatting — shunz / detail
add mitLG BC for IBL3 — shunz / detail
minor refactoring — shunz / detail
switch to the same input parameters as DBL3 — shunz / detail
add LF flux to IBL3 — shunz / detail
Changes to ErrorModel to allow for the new exact nodal metric calculation — hcarson / detail
Changes to ErrorModel to allow for the new exact nodal metric calculation — hcarson / detail
pre merge add.... wth? — hcarson / detail
add Dirichlet mitLG inflow BC to a Blasius flow test case — shunz / detail
Jenkins fix — hcarson / detail
reverting to the develop branch of ErrorModel — hcarson / detail
fixes to case — hcarson / detail
fixes to case — hcarson / detail
intermediate commit: added 4-equation neural net closure model. working on 4-equation IBL3D pde class — shunz / detail
remove extraneous tamplate keyword — shunz / detail
Various changes for arthur: Commented the adjoint_wo_p things from SolverInterface_VMSD_BR2, reducing the memory reqs. Made the Deltawing adapts more uniform and fit with the plan. Added the Solve case for the VMSD delta wing. — hcarson / detail
added soruce terms for the lateral curvature equation of IBL3 — shunz / detail
removed re-definition — shunz / detail
refactored and added PDE and BC for four-equation 3D IBL class. added a starting point for torpedo case — shunz / detail
separated classes of 3D IBL and IBLFourEqn — shunz / detail
generalized templates in IBL3-related integrands — shunz / detail
added instantiations for four-equation 3D IBL — shunz / detail
fixed instantiation typo — shunz / detail
turned on verbose linesearch printout — shunz / detail
added a visous-only Blasius case for 4-equation 3D IBL. added a missing include — shunz / detail
refactored reference coordinate gradient for speedup. add/edit comments for clarity — shunz / detail
typo fix: gradqe*E_qesq. minor edits — shunz / detail
turned off printout in unit testing — shunz / detail
cosmetic changes — shunz / detail
refactored neural net closure models: H22, Hd1, Hc2 — shunz / detail
added output for four-equation 3D IBL — shunz / detail
unit tests and associated modifications — ksabo / detail
fixed auxi equation (wall transpiration): previous mass flux missed crossflow component — shunz / detail
previous fix to wall transpiration (auxi equation) didn't fix. it is now fixed. added unit test — shunz / detail
minor tweak — shunz / detail
minor cleanup — shunz / detail
add velocity gradient output to IBL — shunz / detail
add instantiation — shunz / detail
added IBL3 closure relations in the form of analytic formulae — shunz / detail
tested something with git (still learning this thing) — ksabo / detail
salt deposit #1 (updated files I accidentally erased...) — ksabo / detail
refactored neural net closure implementation — shunz / detail
recoded jacobianMasterState method, still need to test it — ksabo / detail
added a set of IBL3 closure models based on analytic formulae — shunz / detail
restored four-equation neural net closure to its original working state — shunz / detail
switch to using 4-equation IBL3 closure based on analytic formulae. results are similar or slightly better than neural net closure — shunz / detail
fixed a typo (which fortunately wasn't used yet). added exception throws — shunz / detail
fixed include filename — shunz / detail
removed redundant exceptions — shunz / detail
Q1DConservative for TCNE is functionally completed (only needs aesthetic changes at this point) — ksabo / detail
refactored four-eqn IBL3 curve-fit closure — shunz / detail
conformed to vera check: should not use "using namespace" in header files — shunz / detail
fixed unit tests for after API refactoring — shunz / detail
fixed unit tests for the previous API refactoring — shunz / detail
fixed ping tests: finite difference step size — shunz / detail
added ping test for four-eqn IBL3 — shunz / detail
added Blasius flow test case for four-eqn IBL3D. some cleanup — shunz / detail
added include — shunz / detail
added includes — shunz / detail
checked four-eqn IBL3D on Blasius case and stagnation radial flow — shunz / detail
added a stagnation flow toy case. mucked with IBL3 for torpedo case — shunz / detail
fixed toy case to keep up with API refactoring — shunz / detail
added missing include related to MPI — shunz / detail
suppresed file dump in system test — shunz / detail
added assertions — shunz / detail
add some derivates to the IBL3 output — shunz / detail
relaxed pyrite tolerance — shunz / detail
relaxed pyrite tolerance for intel compiler. speed up ping test to avoid time-out — shunz / detail
renamed output — shunz / detail
added and refactored IBL3 output — shunz / detail
make verbose_ if-tests consistent throughout — allmaras / detail
fixed screen dump for checkSolve_ when residuals above tolerance — allmaras / detail
added option to dump solution at each Newton iteration — allmaras / detail
added pressure gradient for space-time — allmaras / detail
added instantiations, etc, needed for log(p) variables with look-up porosity/permeability tables — allmaras / detail
added grid-Laplacian artificial viscosity for pressure; currently hard-coded diffusion coefficient — allmaras / detail
trying to fix gnu9 compiler warning — shunz / detail
added "#include <utilities>" for std::move; added unit test for VectorBlock_3 — allmaras / detail
fixed vera line-length squawk — allmaras / detail
fixed vera line-length squawk — allmaras / detail
fixed vera line-length squawk — allmaras / detail
add a new curve fit model based on low-dissipative DBL3 data — shunz / detail
allow for uncoupled/viscou-only IBL3 solution by tweaking the panel method — shunz / detail
fixed VectorBlock_3 unit test; made ::m() and ::n() static, so 2, 3, and 4 are all consistent — allmaras / detail
forgot to save changes in the last commit... — shunz / detail
relaxed Jenkins timeout threshold for some large ping tests — shunz / detail
minor tweak — shunz / detail
speed up ping test by turning off some redundant sub-block checks — shunz / detail
fix cppcheck error — shunz / detail
speed up ping test by turning off tests on some sub-blocks of the jacobian — shunz / detail
added directory creation for output files — allmaras / detail
Don't use python2 with jenkins — galbramc / detail
removed old version of adjoint-compatible potential solver for Hershey wing — allmaras / detail
temporarily disabled tests involving artificial viscosity fluxes if USE_PRESSURE_AV defined — allmaras / detail
make VectorBlock test-suite names unique (so make unit_build works) — allmaras / detail
added unit tests for circulation integrations — allmaras / detail
added circulation integrations for lift & roll as functional outputs — allmaras / detail
Add Q3 and Q4 elements to Gmsh IO — galbramc / detail
clean-up of circulation-base functional code/test; added drag but #ifdef'ed out, as it's not complete — allmaras / detail
intermediate commit: working on hooking up PETSc for block algebraic equation system — shunz / detail
Fix finding macOS Accelerate BLAS — galbramc / detail
cppcheck fixes for nightly — allmaras / detail
moving back to develop — hcarson / detail
add empty definition to fix undefined reference in weekly test — shunz / detail
add empty definition to fix undefined reference in weekly test — shunz / detail
add empty definition to fix undefined reference in weekly test — shunz / detail
vera fix — hcarson / detail
added a new set of closure relations based on low-dissipation DBL3 data — shunz / detail
updated RthCf1 correlation coefficient — shunz / detail
fixed call to undefined function — shunz / detail
removing unneeded test — hcarson / detail
minor updates to TCNE stuff (getting back into it) — ksabo / detail
added mitLG BC for four equation IBL3D — shunz / detail
fixing unused var — hcarson / detail
Update for latest version of refine — galbramc / detail
missing space — hcarson / detail
Added vpr11@mit.edu to DeveloperEmailAddresses — vpr11 / detail
End of week dump. — ksabo / detail
added pressure jump into source for AV sensor in two-phase porous media — allmaras / detail
minor changes to SPE10 test case: added #ifdef's for log(pn), table lookup; changed — allmaras / detail
added #define label for pressure jump in AV sensor source; updated unit test — allmaras / detail
added new closure option (but commented off for now). updated system test case for four-eqn IBL3D on stagnation flow BL — shunz / detail
zero guard for smoothabs0 — allmaras / detail
updated unit tests to incorporate pressure jumps in sensor source for two-phase AV — allmaras / detail
Use 2 MPI processors on macOS with Jenkins. Make TetGen optional again. — galbramc / detail
Fix for finding boost — galbramc / detail
Some chemsitry model unit tests - need before source term testing. — ksabo / detail
Fix for 2 MPI procs on macOS — galbramc / detail
Various CMake fixes — galbramc / detail
Fix BuildBoost — galbramc / detail
vibrational relaxation time unit tests — ksabo / detail
LIP solver can consume CAPS mesh — galbramc / detail
Update minimum ESP version to 1.18 — galbramc / detail
Relax EGADS version requirement — galbramc / detail
Fix link error — galbramc / detail
Missed a file — galbramc / detail
More link error fixes — galbramc / detail
More link fixes — galbramc / detail
Exlicit Exception instantiations. Bias for Python 3 with CMake — galbramc / detail
added continuousGlobalMap() for block 2x2 AES — shunz / detail
PETSc now works for coupled IBL3 block AES 3x3 — shunz / detail
minor refactoring — shunz / detail
cleaned up and merged sandbox cases — shunz / detail
use reference velocity scale consistently — shunz / detail
turned on quasi-2D closure relations for 3-eq 3D IBL — shunz / detail
Missed one instantiation. More optional TetGen fixes — galbramc / detail
Various small fixes — galbramc / detail
added exceptions for petsc MPI implementations for block AES 3x3 — shunz / detail
turned off 3D IBL transition and lag equations for system test (for now) — shunz / detail
turned off some TBD MPI stuff in petsc block AES 3x3 to avoid compiling errors — shunz / detail
fixed unused variable warnings — shunz / detail
fix compiling error in sandbox case — shunz / detail
Added quasi-2D turbulent closure to four-eqn IBL3 formulation — shunz / detail
fixed deprecated macro — shunz / detail
First set of updates from cleaning up develop branch. Contains code and tests related to adding a spatially varying a-field (i.e. from previous adapt soln) in Homotopy — blsc / detail
Removed sourceCoarse and sourceFine in lieu of sourceTraceJump — galbramc / detail
Move Surreal into SANS namespace — galbramc / detail
Forgot a file — galbramc / detail
Missed MPI SurrealS — galbramc / detail
Add missing include — galbramc / detail
Remove SurrealS(Real,Real) constructor — galbramc / detail
More fixes for modified Surreal — galbramc / detail
Fix warnings — galbramc / detail
Setup to run VMSDBR2 on fixed Joukowski meshes — galbramc / detail
Fix uninitialized variable warnings — galbramc / detail
Fix vera warning — galbramc / detail
src/LinearAlgebra/ — blsc / detail
First pass at prototyping a globally constrained algebraic equation set — blsc / detail
Updates to globally constrained equations to include condensation of matrix in PETSc — blsc / detail
Updates for first round of parallelizing the homotopy — blsc / detail
Parallel homotopy appears to be working — blsc / detail
EGADS interface refactoring. Added meanline blade. — galbramc / detail
Fixes for EGTess — galbramc / detail
More fixes to the EGADS cleanup — galbramc / detail
More EGADS fixes — galbramc / detail
Fix compile error — galbramc / detail
Fix warning — galbramc / detail
Fix more warnings — galbramc / detail
A few tweeks on the homotopy and 3D set up — blsc / detail
Updated interface for globally constrained equations so the jacobian for the pde and the constraints are in seperate functions — blsc / detail
The small problem for static condensation is calculated on one processor then broadcast, that way there are on finite precision inconsistencies — blsc / detail
Added template parameter to determine if (PETSc) should do a shur complement from block 2x2. Note, if we're not using PETSc, then the block matrix is solved as is. This is because the shur complement is only a work around for parallel communication issues. — blsc / detail
... because if you hard code tecplot for 4 levels of grid refinement on output you get a 300Gb tecplot file in 3D ... — blsc / detail
Refactor CubicCamber. Add Normal vector field. — galbramc / detail
Forgot files — galbramc / detail
Add missing includes — galbramc / detail
Number of global constraints is now a runtime option. The global coupling uses a CRS matrix structure, as opposed to MatrixD, since the CRS structure is already there. — blsc / detail
Fixed bug with small system decomposition. The matrix was incorrectly sized for runtime constraints — blsc / detail
Fix field normal vector check for parallel — galbramc / detail
Resolved issues that came up due to merging — blsc / detail
First pass at prototyping a globally constrained algebraic equation set — blsc / detail
Updates to globally constrained equations to include condensation of matrix in PETSc — blsc / detail
Updates for first round of parallelizing the homotopy — blsc / detail
Parallel homotopy appears to be working — blsc / detail
A few tweeks on the homotopy and 3D set up — blsc / detail
Updated interface for globally constrained equations so the jacobian for the pde and the constraints are in seperate functions — blsc / detail
The small problem for static condensation is calculated on one processor then broadcast, that way there are on finite precision inconsistencies — blsc / detail
Added template parameter to determine if (PETSc) should do a shur complement from block 2x2. Note, if we're not using PETSc, then the block matrix is solved as is. This is because the shur complement is only a work around for parallel communication issues. — blsc / detail
... because if you hard code tecplot for 4 levels of grid refinement on output you get a 300Gb tecplot file in 3D ... — blsc / detail
Number of global constraints is now a runtime option. The global coupling uses a CRS matrix structure, as opposed to MatrixD, since the CRS structure is already there. — blsc / detail
Fixed bug with small system decomposition. The matrix was incorrectly sized for runtime constraints — blsc / detail
Clean up after merging from develop — blsc / detail
More merging issues — blsc / detail
Added RotorSource for Euler equations — galbramc / detail
Various small fixes — galbramc / detail
Fix compile error — galbramc / detail
A few more fixes — galbramc / detail
Fix unit test error — galbramc / detail
Bulk of unit tests done. — ksabo / detail
Update refine libraries — galbramc / detail
src/ — blsc / detail
Missing unit tests and ability to daisy chain globally constrained algebraic equation sets — blsc / detail
Missed an update for the serial version of PETSc — blsc / detail
Further speed improvements — galbramc / detail
Fix VMSDBR2 adjoint bug. Update refine build. — galbramc / detail
Some fixes for the Rotor source — galbramc / detail
Trying DG Normal vector field — galbramc / detail
Correction to Rotor source — galbramc / detail
One more fix to Rotor source — galbramc / detail
One more fix — galbramc / detail
updated file names — ksabo / detail
updated file names (round 2) — ksabo / detail
Fixed warnings and other minor things — ksabo / detail
150 char line error fix — ksabo / detail
used brackets for matrix call, fixed now — ksabo / detail
Some cleanup of PETSc Shur solve — galbramc / detail
Fixes for MKL with Block 2x2 — galbramc / detail
Bug fixes for homotopy and some 3D bugs — blsc / detail
Fixed a few bug (undefined param and timeout) — blsc / detail
fixed stack-buffer-overflow error in temperature data structures — ksabo / detail
Missing instantiations, BC that only existed for local testing purposes removed. — blsc / detail
fixed read access error from electron indexing bug — ksabo / detail
fixed compiler warnings — ksabo / detail
dropped tol to 1e-11 from 1e-12, removed extra {} that may have been causing an issue — ksabo / detail
renamed test suite (explicitly added TCNE to name) - was causing conflict error — ksabo / detail
SANS_Nightly fix, efma line compiler warning deleted — ksabo / detail
updated reverse reaction rate temperature calculations — ksabo / detail
Add trace quadrature checking to isValidCell_VMSD. — hcarson / detail
Refactored global constraintes — galbramc / detail
Forgot files — galbramc / detail
Compile fixes — galbramc / detail
Fix unit test — galbramc / detail
Added a new ParamFieldBuilder specialization for (log-permeability, porosity, gen-H) param fields. Added a unit test. — savithru / detail
added pde/IncompressibleNS — allmaras / detail
added 1D incompressible NS for fully developed channel flow with sansLG Robin BCs — allmaras / detail
added 2nd weighting parameter to weightBC; 1st parameter is for Dirichlet / adjoint state, — allmaras / detail
added 2nd weighting parameter to weightBC; missed one file — allmaras / detail
added Robin_sansLG BC catagory — allmaras / detail
IO file check flag -> true — allmaras / detail
1D incompressible NS solver for fully developed channel flow — allmaras / detail
bug fixes — allmaras / detail
Major refactor of the two-phase PDE classes to support a (log-permeability, porosity) param-field. The artificial viscosity classes use a (log-permeability, porosity, log-H) param-field. — savithru / detail
Updated ErrorEstimate_DGBR2 instantiations — savithru / detail
Updated tests. All unit and system tests compile now. — savithru / detail
added test for -Identity() initializer — allmaras / detail
Fix so -DLA::Identity() works properly — galbramc / detail
added BCs for 1D RANS-SA for channel flow — allmaras / detail
unit tests for 1D RANS-SA for channel flow — allmaras / detail
unit tests: missed one — allmaras / detail
unit test output pattern test files — allmaras / detail
1D RANS-SA test case for fully developed channel flow -- preliminary — allmaras / detail
updated test case — allmaras / detail
More refactoring to get sandbox cases to compile. — savithru / detail
Fixed a unit test. — savithru / detail
Missed a sandbox case. — savithru / detail
Reverting include path for boost output_test_stream — savithru / detail
made algebraic eqn-set files more consistent between Galerkin and Galerkin_Stabilized — allmaras / detail
instantiated VectorS<2> output — allmaras / detail
Updated discretizations and PDE interfaces to use both paramL and paramR when evaluating fluxAdvectiveUpwind or fluxAdvectiveUpwindSpaceTime. This is important for the two-phase flow PDE, where the temporal flux depends on the porosity param-field value (which can be heterogeneous). — savithru / detail
Update 2D ugrid reader for UNFORATTED (.r8.ugrid) files. — galbramc / detail
Fix warning — galbramc / detail
Fix warning — galbramc / detail
added Robin BC dot product tests; currently commented out, since they fail to compile — allmaras / detail
added Tensor-Vector dot-products: e.g. dot( VectorX, TensorMatrixQ ) — allmaras / detail
clean up: MatrixS<D,D,MatrixQ> -> TensorMatrixQ — allmaras / detail
needed additional #include's — allmaras / detail
added ND ctor for BCs: BC( PDE, BCArgs ) — allmaras / detail
added dist parameters to certain functions; added jacobianMasterState; code clean-up — allmaras / detail
added skin friction / drag output for 1D incompressible NS channel flow — allmaras / detail
added #if's to try different combinations of '(gradphi . K . nHat) betaBC^t rsdBC'; — allmaras / detail
Updated FV-TPFA discretization to work for heterogeneous properties + some cleanup. — savithru / detail
Added missing includes — savithru / detail
removed dot-products supporting (K . nHat) operator in Robin_sansLG BCs, and reverted — allmaras / detail
added IncompressibleNSLib to unit test builders — allmaras / detail
latest sandbox tests for 1D fully developed channel flow — allmaras / detail
Updated global contraints. Solve rotor speed at specified power. — galbramc / detail
Compile fixes — galbramc / detail
Add missing files — galbramc / detail
added optional parameter to output_gnuplot for number of points per element (default remains 11) — allmaras / detail
code cleanup for 1D NS/RANS — allmaras / detail
solution function for 1D RANS: analytic law-of-the-wall for SA — allmaras / detail
missed a pattern file — allmaras / detail
missed a unit test file — allmaras / detail
updated 1D RANS fully developed channel flow case to (a) work, (b) output useful data, — allmaras / detail
Fix all output functionals to properly work in parallel — galbramc / detail
name change for test suite to avoid link conflict for 'make unit' — allmaras / detail
Fix compile error — galbramc / detail
Compile fix — galbramc / detail
Missing include — galbramc / detail
More missing includes — galbramc / detail
More missing includes — galbramc / detail
reverted to depricated include directory for <boost/test/unit_test.hpp> — allmaras / detail
More missing include fixes — galbramc / detail
Upgrade to AFLR 10.8.7 — galbramc / detail
Update AFLR libraries — galbramc / detail
src/ — blsc / detail
Updated BC::isValidState interface so mitState BCs can check if the boundary state generated is also valid — blsc / detail
Removed file that didn't work out and shouldn't have been commited — blsc / detail
Fix AFLR library order — galbramc / detail
Formatting fixes — blsc / detail
Missing instantiation and arguments flipped causing a unit test to fail — blsc / detail
Fixes for AFLR4 and EGADS updates — galbramc / detail
Fix for wake sheets — galbramc / detail
Various small fixes — galbramc / detail
Allow specified interior traces — galbramc / detail
Compile fixes. Allow UnionJack to work in parallel — galbramc / detail
Fix compile error — galbramc / detail
removed 1D incompressible NS channel flow test case -- won't compile due to double — allmaras / detail
Fixes for parallel specified interior traces. Added ParkMMS and EntropyProduction output. — galbramc / detail
Forgot files — galbramc / detail
Fixes for parallel interior traces — galbramc / detail
Fix uninitialized data — galbramc / detail
Fix intel warning — galbramc / detail
Added new SPE10 cases for time-marching FV and DGBR2+AV. — savithru / detail
Fix parallel DG DOF indexing for multiple cell groups — galbramc / detail
fixes for jenkins squawks — allmaras / detail
Fix EG zombies — galbramc / detail
missing #include <vector> — allmaras / detail
fixed warning for un-used typedef — allmaras / detail
added isValidState with (x,time,nx,q) params for Dirichlet — allmaras / detail
Hardening ReadSolution_PX to throw uniformly across MPI if rank 0 fails to load the file. Can now use try catch around restart blocks! — hcarson / detail
fixed uninitialized variables in test — allmaras / detail
removed redundant instantiation — allmaras / detail
removed unneeded print statements and a typo — hcarson / detail
Nightly fixes — galbramc / detail
Various small fixes — galbramc / detail
Fix to erroneous logic — hcarson / detail
Make safe_at work for any container type, and reduce code duplication — hcarson / detail
Nightly fixes — galbramc / detail
More nightly fixes — galbramc / detail
fixed nightly warning on unused variable — allmaras / detail
Relax execution time — galbramc / detail
Changed isValid to check: qbar + qp at cell quads, and qbar, qbar + qpL and qbar + qpR for interior traces. These are the only values used in flux evaluation — hcarson / detail
Fix accross spelling. Fix AFLR3 to distribute in parallel. Update interior trace parallel construction. — galbramc / detail
Reduce maximum grid size for PDESourceOnly_Projection_btest — galbramc / detail
Add latest PETSc version — galbramc / detail
Nightly fix — galbramc / detail
Various CMake fixes — galbramc / detail
Fix for building Tetgen — galbramc / detail
Don't ues intel compiler to compile TetGen — galbramc / detail
Nightly fix — galbramc / detail
Relax tolerance for nightly test — galbramc / detail
Update refine, TetGen, and AFLR. Added ParameterDictList for a list of dictionaries. Rename MeanlineBlade to CamberBlade. — galbramc / detail
Correct AFLR version — galbramc / detail
Forgot tetgen patch — galbramc / detail
Various fixes — galbramc / detail
Fix library order — galbramc / detail
Relax ping tolerance — galbramc / detail
Comment out file dump — galbramc / detail
Nightly fixes — galbramc / detail
Add python UI for body force calculations. — galbramc / detail
Fix compile errors — galbramc / detail
Fix warning — galbramc / detail
Various compile fixes — galbramc / detail
Some small fixes — galbramc / detail
Fix interior trace partitioning — galbramc / detail
Some small fixes — galbramc / detail
Added the option to specify a reference permeability for the well model. Updated SPE10 test cases to use the permeabilities at the well locations. — savithru / detail
Weekly fix — galbramc / detail

#268 (Oct 5, 2020, 8:00:27 AM)

First pass at structuring TCNE pde, a little messy — blsc / detail
TCNE stuff — ksabo / detail
relocate QauxvInterpret forward declaration in prep for 3D stuff — shunz / detail
Added basic stuff for 3D IBL — shunz / detail
Minor cleanup — shunz / detail
Initial pass on PDEIBL3D — shunz / detail
Filled in 3D IBL closure with fully 3D components set to zero — shunz / detail
Added BCNone for IBL3D — shunz / detail
added a working version of sandbox case for IBL3D — shunz / detail
Added a sheet grid of triangles in 3D for IBL3D — shunz / detail
Added instantiation — shunz / detail
Intermediate commit — shunz / detail
Working on integrands for first 3D IBL case — shunz / detail
More fixes to integrand classes for IBL3D — shunz / detail
Fixed instantiations for IBL3D — shunz / detail
Add explicit instantiations and fix typos in closure class — shunz / detail
Initial version of local Cartesian basis construction for 3D IBL — shunz / detail
Minor cleanup — shunz / detail
Fix constuction of q1 and q2 vectors in case of stagnation flows — shunz / detail
Add velocity gradient calculation in cell integrand of 3D IBL — shunz / detail
Refactor and add a 2D stagnation flow test case — shunz / detail
Add a 3D quad grid — shunz / detail
Update cmake list for unit grid test — shunz / detail
Fix typo in 3D quad sheet grid — shunz / detail
fix bug in qauxv gradient calculation in 3D IBL cell integrand — shunz / detail
Fix the scale and dimension of dissipation integral in 3D integral — shunz / detail
fix a typo in thickness identity — shunz / detail
Add more options to 3D IBL stagnation flow case, including quad grid, solution initialization, — shunz / detail
one more bug fix in cell integrand for 3D IBL — shunz / detail
Bugfix in calculation of trace unit normal vector for area cells in 3D — shunz / detail
Add Nishida's crossflow closure. Add pyrite check of stagnation flow case for 3D IBL. Minor addition for debugging in PDEIBL3D — shunz / detail
fix dependents of refactoring of GetSolnDofCell_IBL — shunz / detail
Add a 3D flat plate source panel method but haven't tested yet — shunz / detail
intermediate commit: minor clenaup and add guards. — shunz / detail
intermediate commit: working on 3D coupled IBL for torpedo cass — shunz / detail
add 3x3 equation system — shunz / detail
typo fix. add partial instantiations for system 3x3 vector and matrix types — shunz / detail
add linesearch data type for 3x3 equation system — shunz / detail
add missing include — shunz / detail
intermediate commit: fix many compiling errors in the way of running torpedo case for IBL3D. switching computer to continue the work... — shunz / detail
refactor projection to Qauxi — shunz / detail
add interior trace integrand for projection onto Qauxi — shunz / detail
minor fix — shunz / detail
add instantiations for IBL3D torpedo case — shunz / detail
add instantiations for coupled IBL3D — shunz / detail
remove unnecessary assert — shunz / detail
fix for coupled IBL case to compile and run — shunz / detail
fix uninitialized dummy DOFs — shunz / detail
fix setDOFFrom in Qauxv 3D (missing q_y previously) — shunz / detail
Coupled 3D IBL case converged on some simple variants of the torpedo case: linear and mildly nonlinear radial velocity distribution with attached laminar BLs — shunz / detail
Tried triangle grid as well: fine on radially linear velocity distribution but couldn't converge on a more nonlinear case — shunz / detail
cleaned up unused stuff — shunz / detail
refactor SetIBLoutputCellGroup to accommodate both 3D and 2D IBL — shunz / detail
remove outdated include — shunz / detail
more refactoring of SetIBLoutputCellGroup for 3D IBL. working progress. switching computer — shunz / detail
intermediate commit. switching computer. — shunz / detail
enable tecplot output for 3D IBL — shunz / detail
added PyDict options for Verbose and writeMarketMatrix for UMFPACK — allmaras / detail
add full-state BC for IBL3D with corresponding boundary trace integrand. verified on an uncoupled Blasius case — shunz / detail
add a coupled IBL3D Blasius case — shunz / detail
implement PTC for coupled IBL 3x3 system — shunz / detail
add commented-out stuff for turning off laminar amplification and lag equations in IBL3D — shunz / detail
fix typo in commented-out stuff — shunz / detail
enable rotated mesh for IBL3D torpedo case — shunz / detail
set up a torpedo with grid aligned with xy axes. turned off laminar amplification and lag equations [need to be brought back after testing purely laminar BLs] — shunz / detail
minor change to test case — shunz / detail
minor refactoring on Blasius inflow BC params — shunz / detail
rename test cases — shunz / detail
speed up panel-related jacobian calculation using cached influence matrix in place of surrealized qauxifld — shunz / detail
add jacobian timing for refactoring purpose — shunz / detail
add similar (to DBL3) Falkner-Skan inflow bc for IBL3D with non-constant inflow state. set up a tornado case with rotated xy grid to compare with DBL3 — shunz / detail
minor refactoring of test cases — shunz / detail
remove trivial zero z velocity component to speed up panel method — shunz / detail
minor refactoring — shunz / detail
typo fix — shunz / detail
precompute inviscid velocity for panel, which resulted in O(10) speedup in related residual calculation. fix DOF indexing in residual/jacobian precomputation — shunz / detail
define macro to comment off some lines for timing/refactoring — shunz / detail
minor comments — shunz / detail
add ping test for coupled IBL in 3x3 block system — shunz / detail
attempt to mirror tets in XField3D_Box_Tet_X1_WakeCut — allmaras / detail
reverted to original prism-split coding; remainder of code is hard-coded for the — allmaras / detail
fix typo in Cf2 closure, although it didn't change the torpedo case results much — shunz / detail
Fix dot for VectorBlock — galbramc / detail
added PyDict control of wake & Kutta Nitsche parameters — allmaras / detail
Added test of sourceCoarse and sourceFine for RANSSA with artificial viscosity. — blsc / detail
Added missing sourceCoarse and sourceFine functions from pressure gradient sensor and added unit test — blsc / detail
added PyDict solve check option to UMFPACK; currently commented out actual check — allmaras / detail
Fixes for checking the UMFPACK solve — galbramc / detail
Missed adding PDEEulermitAVDiffusion2D.h to the commit. This file has specialized versions of sourceCoarse and sourceFine for a param that is a H-tensor and distance function. — blsc / detail
add a wall term to dissipation relation of Nishida's closure, although it didn't affect things much — shunz / detail
add a test case of fx67-k-170 airfoil — shunz / detail
minor edit to output filenames at convergence failures — shunz / detail
resolve merge conflict — shunz / detail
changed default flux of IBL to LF flux — shunz / detail
add a test case for drag polar — shunz / detail
ran drag polar cases — shunz / detail
refactored reference speed in transition model — shunz / detail
typo fix — shunz / detail
rename working directory — shunz / detail
refator characteristic speed for PTC — shunz / detail
refator characteristic speed for PTC — shunz / detail
Add unit tests demonstrating that the step matrix calculation is stable to scaling — hcarson / detail
update pyrite files — shunz / detail
refactor 3D IBL closure API to allow for alternative closure models — shunz / detail
save 3D closure relations in a separate header — shunz / detail
add neural net closure for 3D IBL — shunz / detail
run drag polar on finer grids — shunz / detail
switch to run on acdl desktop — shunz / detail
fix memory leak warning caused by accessing index -1 — shunz / detail
minor update — shunz / detail
mucking with PETSc for IBL3 — shunz / detail
instantiate MKL_PARDISO solver for matrix block 3x3 — shunz / detail
tried MKL_PARDISO solver for IBL3 — shunz / detail
Adding test that Explicitly calculating the step from the metric directly is not unstable. Cases in 2D and 3D, showing stability to an AR of 2^10 in 3D, and 2^64 in 2D. — hcarson / detail
minor typo fix — shunz / detail
fix formatting — shunz / detail
add mitLG BC for IBL3 — shunz / detail
minor refactoring — shunz / detail
switch to the same input parameters as DBL3 — shunz / detail
add LF flux to IBL3 — shunz / detail
Changes to ErrorModel to allow for the new exact nodal metric calculation — hcarson / detail
Changes to ErrorModel to allow for the new exact nodal metric calculation — hcarson / detail
pre merge add.... wth? — hcarson / detail
add Dirichlet mitLG inflow BC to a Blasius flow test case — shunz / detail
Jenkins fix — hcarson / detail
reverting to the develop branch of ErrorModel — hcarson / detail
fixes to case — hcarson / detail
fixes to case — hcarson / detail
intermediate commit: added 4-equation neural net closure model. working on 4-equation IBL3D pde class — shunz / detail
remove extraneous tamplate keyword — shunz / detail
Various changes for arthur: Commented the adjoint_wo_p things from SolverInterface_VMSD_BR2, reducing the memory reqs. Made the Deltawing adapts more uniform and fit with the plan. Added the Solve case for the VMSD delta wing. — hcarson / detail
added soruce terms for the lateral curvature equation of IBL3 — shunz / detail
removed re-definition — shunz / detail
refactored and added PDE and BC for four-equation 3D IBL class. added a starting point for torpedo case — shunz / detail
separated classes of 3D IBL and IBLFourEqn — shunz / detail
generalized templates in IBL3-related integrands — shunz / detail
added instantiations for four-equation 3D IBL — shunz / detail
fixed instantiation typo — shunz / detail
turned on verbose linesearch printout — shunz / detail
added a visous-only Blasius case for 4-equation 3D IBL. added a missing include — shunz / detail
refactored reference coordinate gradient for speedup. add/edit comments for clarity — shunz / detail
typo fix: gradqe*E_qesq. minor edits — shunz / detail
turned off printout in unit testing — shunz / detail
cosmetic changes — shunz / detail
refactored neural net closure models: H22, Hd1, Hc2 — shunz / detail
added output for four-equation 3D IBL — shunz / detail
unit tests and associated modifications — ksabo / detail
fixed auxi equation (wall transpiration): previous mass flux missed crossflow component — shunz / detail
previous fix to wall transpiration (auxi equation) didn't fix. it is now fixed. added unit test — shunz / detail
minor tweak — shunz / detail
minor cleanup — shunz / detail
add velocity gradient output to IBL — shunz / detail
add instantiation — shunz / detail
added IBL3 closure relations in the form of analytic formulae — shunz / detail
tested something with git (still learning this thing) — ksabo / detail
salt deposit #1 (updated files I accidentally erased...) — ksabo / detail
refactored neural net closure implementation — shunz / detail
recoded jacobianMasterState method, still need to test it — ksabo / detail
added a set of IBL3 closure models based on analytic formulae — shunz / detail
restored four-equation neural net closure to its original working state — shunz / detail
switch to using 4-equation IBL3 closure based on analytic formulae. results are similar or slightly better than neural net closure — shunz / detail
fixed a typo (which fortunately wasn't used yet). added exception throws — shunz / detail
fixed include filename — shunz / detail
removed redundant exceptions — shunz / detail
Q1DConservative for TCNE is functionally completed (only needs aesthetic changes at this point) — ksabo / detail
refactored four-eqn IBL3 curve-fit closure — shunz / detail
conformed to vera check: should not use "using namespace" in header files — shunz / detail
fixed unit tests for after API refactoring — shunz / detail
fixed unit tests for the previous API refactoring — shunz / detail
fixed ping tests: finite difference step size — shunz / detail
added ping test for four-eqn IBL3 — shunz / detail
added Blasius flow test case for four-eqn IBL3D. some cleanup — shunz / detail
added include — shunz / detail
added includes — shunz / detail
checked four-eqn IBL3D on Blasius case and stagnation radial flow — shunz / detail
added a stagnation flow toy case. mucked with IBL3 for torpedo case — shunz / detail
fixed toy case to keep up with API refactoring — shunz / detail
added missing include related to MPI — shunz / detail
suppresed file dump in system test — shunz / detail
added assertions — shunz / detail
add some derivates to the IBL3 output — shunz / detail
relaxed pyrite tolerance — shunz / detail
relaxed pyrite tolerance for intel compiler. speed up ping test to avoid time-out — shunz / detail
renamed output — shunz / detail
added and refactored IBL3 output — shunz / detail
make verbose_ if-tests consistent throughout — allmaras / detail
fixed screen dump for checkSolve_ when residuals above tolerance — allmaras / detail
added option to dump solution at each Newton iteration — allmaras / detail
added pressure gradient for space-time — allmaras / detail
added instantiations, etc, needed for log(p) variables with look-up porosity/permeability tables — allmaras / detail
added grid-Laplacian artificial viscosity for pressure; currently hard-coded diffusion coefficient — allmaras / detail
trying to fix gnu9 compiler warning — shunz / detail
added "#include <utilities>" for std::move; added unit test for VectorBlock_3 — allmaras / detail
fixed vera line-length squawk — allmaras / detail
fixed vera line-length squawk — allmaras / detail
fixed vera line-length squawk — allmaras / detail
add a new curve fit model based on low-dissipative DBL3 data — shunz / detail
allow for uncoupled/viscou-only IBL3 solution by tweaking the panel method — shunz / detail
fixed VectorBlock_3 unit test; made ::m() and ::n() static, so 2, 3, and 4 are all consistent — allmaras / detail
forgot to save changes in the last commit... — shunz / detail
relaxed Jenkins timeout threshold for some large ping tests — shunz / detail
minor tweak — shunz / detail
speed up ping test by turning off some redundant sub-block checks — shunz / detail
fix cppcheck error — shunz / detail
speed up ping test by turning off tests on some sub-blocks of the jacobian — shunz / detail
added directory creation for output files — allmaras / detail
Don't use python2 with jenkins — galbramc / detail
removed old version of adjoint-compatible potential solver for Hershey wing — allmaras / detail
temporarily disabled tests involving artificial viscosity fluxes if USE_PRESSURE_AV defined — allmaras / detail
make VectorBlock test-suite names unique (so make unit_build works) — allmaras / detail
added unit tests for circulation integrations — allmaras / detail
added circulation integrations for lift & roll as functional outputs — allmaras / detail
Add Q3 and Q4 elements to Gmsh IO — galbramc / detail
clean-up of circulation-base functional code/test; added drag but #ifdef'ed out, as it's not complete — allmaras / detail
intermediate commit: working on hooking up PETSc for block algebraic equation system — shunz / detail
Fix finding macOS Accelerate BLAS — galbramc / detail
cppcheck fixes for nightly — allmaras / detail
moving back to develop — hcarson / detail
add empty definition to fix undefined reference in weekly test — shunz / detail
add empty definition to fix undefined reference in weekly test — shunz / detail
add empty definition to fix undefined reference in weekly test — shunz / detail
vera fix — hcarson / detail
added a new set of closure relations based on low-dissipation DBL3 data — shunz / detail
updated RthCf1 correlation coefficient — shunz / detail
fixed call to undefined function — shunz / detail
removing unneeded test — hcarson / detail
minor updates to TCNE stuff (getting back into it) — ksabo / detail
added mitLG BC for four equation IBL3D — shunz / detail
fixing unused var — hcarson / detail
Update for latest version of refine — galbramc / detail
missing space — hcarson / detail
Added vpr11@mit.edu to DeveloperEmailAddresses — vpr11 / detail
End of week dump. — ksabo / detail
added pressure jump into source for AV sensor in two-phase porous media — allmaras / detail
minor changes to SPE10 test case: added #ifdef's for log(pn), table lookup; changed — allmaras / detail
added #define label for pressure jump in AV sensor source; updated unit test — allmaras / detail
added new closure option (but commented off for now). updated system test case for four-eqn IBL3D on stagnation flow BL — shunz / detail
zero guard for smoothabs0 — allmaras / detail
updated unit tests to incorporate pressure jumps in sensor source for two-phase AV — allmaras / detail
Use 2 MPI processors on macOS with Jenkins. Make TetGen optional again. — galbramc / detail
Fix for finding boost — galbramc / detail
Some chemsitry model unit tests - need before source term testing. — ksabo / detail
Fix for 2 MPI procs on macOS — galbramc / detail
Various CMake fixes — galbramc / detail
Fix BuildBoost — galbramc / detail
vibrational relaxation time unit tests — ksabo / detail
LIP solver can consume CAPS mesh — galbramc / detail
Update minimum ESP version to 1.18 — galbramc / detail
Relax EGADS version requirement — galbramc / detail
Fix link error — galbramc / detail
Missed a file — galbramc / detail
More link error fixes — galbramc / detail
More link fixes — galbramc / detail
Exlicit Exception instantiations. Bias for Python 3 with CMake — galbramc / detail
added continuousGlobalMap() for block 2x2 AES — shunz / detail
PETSc now works for coupled IBL3 block AES 3x3 — shunz / detail
minor refactoring — shunz / detail
cleaned up and merged sandbox cases — shunz / detail
use reference velocity scale consistently — shunz / detail
turned on quasi-2D closure relations for 3-eq 3D IBL — shunz / detail
Missed one instantiation. More optional TetGen fixes — galbramc / detail
Various small fixes — galbramc / detail
added exceptions for petsc MPI implementations for block AES 3x3 — shunz / detail
turned off 3D IBL transition and lag equations for system test (for now) — shunz / detail
turned off some TBD MPI stuff in petsc block AES 3x3 to avoid compiling errors — shunz / detail
fixed unused variable warnings — shunz / detail
fix compiling error in sandbox case — shunz / detail
Added quasi-2D turbulent closure to four-eqn IBL3 formulation — shunz / detail
fixed deprecated macro — shunz / detail
First set of updates from cleaning up develop branch. Contains code and tests related to adding a spatially varying a-field (i.e. from previous adapt soln) in Homotopy — blsc / detail
Removed sourceCoarse and sourceFine in lieu of sourceTraceJump — galbramc / detail
Move Surreal into SANS namespace — galbramc / detail
Forgot a file — galbramc / detail
Missed MPI SurrealS — galbramc / detail
Add missing include — galbramc / detail
Remove SurrealS(Real,Real) constructor — galbramc / detail
More fixes for modified Surreal — galbramc / detail
Fix warnings — galbramc / detail
Setup to run VMSDBR2 on fixed Joukowski meshes — galbramc / detail
Fix uninitialized variable warnings — galbramc / detail
Fix vera warning — galbramc / detail
src/LinearAlgebra/ — blsc / detail
First pass at prototyping a globally constrained algebraic equation set — blsc / detail
Updates to globally constrained equations to include condensation of matrix in PETSc — blsc / detail
Updates for first round of parallelizing the homotopy — blsc / detail
Parallel homotopy appears to be working — blsc / detail
EGADS interface refactoring. Added meanline blade. — galbramc / detail
Fixes for EGTess — galbramc / detail
More fixes to the EGADS cleanup — galbramc / detail
More EGADS fixes — galbramc / detail
Fix compile error — galbramc / detail
Fix warning — galbramc / detail
Fix more warnings — galbramc / detail
A few tweeks on the homotopy and 3D set up — blsc / detail
Updated interface for globally constrained equations so the jacobian for the pde and the constraints are in seperate functions — blsc / detail
The small problem for static condensation is calculated on one processor then broadcast, that way there are on finite precision inconsistencies — blsc / detail
Added template parameter to determine if (PETSc) should do a shur complement from block 2x2. Note, if we're not using PETSc, then the block matrix is solved as is. This is because the shur complement is only a work around for parallel communication issues. — blsc / detail
... because if you hard code tecplot for 4 levels of grid refinement on output you get a 300Gb tecplot file in 3D ... — blsc / detail
Refactor CubicCamber. Add Normal vector field. — galbramc / detail
Forgot files — galbramc / detail
Add missing includes — galbramc / detail
Number of global constraints is now a runtime option. The global coupling uses a CRS matrix structure, as opposed to MatrixD, since the CRS structure is already there. — blsc / detail
Fixed bug with small system decomposition. The matrix was incorrectly sized for runtime constraints — blsc / detail
Fix field normal vector check for parallel — galbramc / detail
Resolved issues that came up due to merging — blsc / detail
First pass at prototyping a globally constrained algebraic equation set — blsc / detail
Updates to globally constrained equations to include condensation of matrix in PETSc — blsc / detail
Updates for first round of parallelizing the homotopy — blsc / detail
Parallel homotopy appears to be working — blsc / detail
A few tweeks on the homotopy and 3D set up — blsc / detail
Updated interface for globally constrained equations so the jacobian for the pde and the constraints are in seperate functions — blsc / detail
The small problem for static condensation is calculated on one processor then broadcast, that way there are on finite precision inconsistencies — blsc / detail
Added template parameter to determine if (PETSc) should do a shur complement from block 2x2. Note, if we're not using PETSc, then the block matrix is solved as is. This is because the shur complement is only a work around for parallel communication issues. — blsc / detail
... because if you hard code tecplot for 4 levels of grid refinement on output you get a 300Gb tecplot file in 3D ... — blsc / detail
Number of global constraints is now a runtime option. The global coupling uses a CRS matrix structure, as opposed to MatrixD, since the CRS structure is already there. — blsc / detail
Fixed bug with small system decomposition. The matrix was incorrectly sized for runtime constraints — blsc / detail
Clean up after merging from develop — blsc / detail
More merging issues — blsc / detail
Added RotorSource for Euler equations — galbramc / detail
Various small fixes — galbramc / detail
Fix compile error — galbramc / detail
A few more fixes — galbramc / detail
Fix unit test error — galbramc / detail
Bulk of unit tests done. — ksabo / detail
Update refine libraries — galbramc / detail
src/ — blsc / detail
Missing unit tests and ability to daisy chain globally constrained algebraic equation sets — blsc / detail
Missed an update for the serial version of PETSc — blsc / detail
Further speed improvements — galbramc / detail
Fix VMSDBR2 adjoint bug. Update refine build. — galbramc / detail
Some fixes for the Rotor source — galbramc / detail
Trying DG Normal vector field — galbramc / detail
Correction to Rotor source — galbramc / detail
One more fix to Rotor source — galbramc / detail
One more fix — galbramc / detail
updated file names — ksabo / detail
updated file names (round 2) — ksabo / detail
Fixed warnings and other minor things — ksabo / detail
150 char line error fix — ksabo / detail
used brackets for matrix call, fixed now — ksabo / detail
Some cleanup of PETSc Shur solve — galbramc / detail
Fixes for MKL with Block 2x2 — galbramc / detail
Bug fixes for homotopy and some 3D bugs — blsc / detail
Fixed a few bug (undefined param and timeout) — blsc / detail
fixed stack-buffer-overflow error in temperature data structures — ksabo / detail
Missing instantiations, BC that only existed for local testing purposes removed. — blsc / detail
fixed read access error from electron indexing bug — ksabo / detail
fixed compiler warnings — ksabo / detail
dropped tol to 1e-11 from 1e-12, removed extra {} that may have been causing an issue — ksabo / detail
renamed test suite (explicitly added TCNE to name) - was causing conflict error — ksabo / detail
SANS_Nightly fix, efma line compiler warning deleted — ksabo / detail
updated reverse reaction rate temperature calculations — ksabo / detail
Add trace quadrature checking to isValidCell_VMSD. — hcarson / detail
Refactored global constraintes — galbramc / detail
Forgot files — galbramc / detail
Compile fixes — galbramc / detail
Fix unit test — galbramc / detail
Added a new ParamFieldBuilder specialization for (log-permeability, porosity, gen-H) param fields. Added a unit test. — savithru / detail
added pde/IncompressibleNS — allmaras / detail
added 1D incompressible NS for fully developed channel flow with sansLG Robin BCs — allmaras / detail
added 2nd weighting parameter to weightBC; 1st parameter is for Dirichlet / adjoint state, — allmaras / detail
added 2nd weighting parameter to weightBC; missed one file — allmaras / detail
added Robin_sansLG BC catagory — allmaras / detail
IO file check flag -> true — allmaras / detail
1D incompressible NS solver for fully developed channel flow — allmaras / detail
bug fixes — allmaras / detail
Major refactor of the two-phase PDE classes to support a (log-permeability, porosity) param-field. The artificial viscosity classes use a (log-permeability, porosity, log-H) param-field. — savithru / detail
Updated ErrorEstimate_DGBR2 instantiations — savithru / detail
Updated tests. All unit and system tests compile now. — savithru / detail
added test for -Identity() initializer — allmaras / detail
Fix so -DLA::Identity() works properly — galbramc / detail
added BCs for 1D RANS-SA for channel flow — allmaras / detail
unit tests for 1D RANS-SA for channel flow — allmaras / detail
unit tests: missed one — allmaras / detail
unit test output pattern test files — allmaras / detail
1D RANS-SA test case for fully developed channel flow -- preliminary — allmaras / detail
updated test case — allmaras / detail
More refactoring to get sandbox cases to compile. — savithru / detail
Fixed a unit test. — savithru / detail
Missed a sandbox case. — savithru / detail
Reverting include path for boost output_test_stream — savithru / detail
made algebraic eqn-set files more consistent between Galerkin and Galerkin_Stabilized — allmaras / detail
instantiated VectorS<2> output — allmaras / detail
Updated discretizations and PDE interfaces to use both paramL and paramR when evaluating fluxAdvectiveUpwind or fluxAdvectiveUpwindSpaceTime. This is important for the two-phase flow PDE, where the temporal flux depends on the porosity param-field value (which can be heterogeneous). — savithru / detail
Update 2D ugrid reader for UNFORATTED (.r8.ugrid) files. — galbramc / detail
Fix warning — galbramc / detail
Fix warning — galbramc / detail
added Robin BC dot product tests; currently commented out, since they fail to compile — allmaras / detail
added Tensor-Vector dot-products: e.g. dot( VectorX, TensorMatrixQ ) — allmaras / detail
clean up: MatrixS<D,D,MatrixQ> -> TensorMatrixQ — allmaras / detail
needed additional #include's — allmaras / detail
added ND ctor for BCs: BC( PDE, BCArgs ) — allmaras / detail
added dist parameters to certain functions; added jacobianMasterState; code clean-up — allmaras / detail
added skin friction / drag output for 1D incompressible NS channel flow — allmaras / detail
added #if's to try different combinations of '(gradphi . K . nHat) betaBC^t rsdBC'; — allmaras / detail
Updated FV-TPFA discretization to work for heterogeneous properties + some cleanup. — savithru / detail
Added missing includes — savithru / detail
removed dot-products supporting (K . nHat) operator in Robin_sansLG BCs, and reverted — allmaras / detail
added IncompressibleNSLib to unit test builders — allmaras / detail
latest sandbox tests for 1D fully developed channel flow — allmaras / detail
Updated global contraints. Solve rotor speed at specified power. — galbramc / detail
Compile fixes — galbramc / detail
Add missing files — galbramc / detail
added optional parameter to output_gnuplot for number of points per element (default remains 11) — allmaras / detail
code cleanup for 1D NS/RANS — allmaras / detail
solution function for 1D RANS: analytic law-of-the-wall for SA — allmaras / detail
missed a pattern file — allmaras / detail
missed a unit test file — allmaras / detail
updated 1D RANS fully developed channel flow case to (a) work, (b) output useful data, — allmaras / detail
Fix all output functionals to properly work in parallel — galbramc / detail
name change for test suite to avoid link conflict for 'make unit' — allmaras / detail
Fix compile error — galbramc / detail
Compile fix — galbramc / detail
Missing include — galbramc / detail
More missing includes — galbramc / detail
More missing includes — galbramc / detail
reverted to depricated include directory for <boost/test/unit_test.hpp> — allmaras / detail
More missing include fixes — galbramc / detail
Upgrade to AFLR 10.8.7 — galbramc / detail
Update AFLR libraries — galbramc / detail
src/ — blsc / detail
Updated BC::isValidState interface so mitState BCs can check if the boundary state generated is also valid — blsc / detail
Removed file that didn't work out and shouldn't have been commited — blsc / detail
Fix AFLR library order — galbramc / detail
Formatting fixes — blsc / detail
Missing instantiation and arguments flipped causing a unit test to fail — blsc / detail
Fixes for AFLR4 and EGADS updates — galbramc / detail
Fix for wake sheets — galbramc / detail
Various small fixes — galbramc / detail
Allow specified interior traces — galbramc / detail
Compile fixes. Allow UnionJack to work in parallel — galbramc / detail
Fix compile error — galbramc / detail
removed 1D incompressible NS channel flow test case -- won't compile due to double — allmaras / detail
Fixes for parallel specified interior traces. Added ParkMMS and EntropyProduction output. — galbramc / detail
Forgot files — galbramc / detail
Fixes for parallel interior traces — galbramc / detail
Fix uninitialized data — galbramc / detail
Fix intel warning — galbramc / detail
Added new SPE10 cases for time-marching FV and DGBR2+AV. — savithru / detail
Fix parallel DG DOF indexing for multiple cell groups — galbramc / detail
fixes for jenkins squawks — allmaras / detail
Fix EG zombies — galbramc / detail
missing #include <vector> — allmaras / detail
fixed warning for un-used typedef — allmaras / detail
added isValidState with (x,time,nx,q) params for Dirichlet — allmaras / detail
Hardening ReadSolution_PX to throw uniformly across MPI if rank 0 fails to load the file. Can now use try catch around restart blocks! — hcarson / detail
fixed uninitialized variables in test — allmaras / detail
removed redundant instantiation — allmaras / detail
removed unneeded print statements and a typo — hcarson / detail
Nightly fixes — galbramc / detail
Various small fixes — galbramc / detail
Fix to erroneous logic — hcarson / detail
Make safe_at work for any container type, and reduce code duplication — hcarson / detail
Nightly fixes — galbramc / detail
More nightly fixes — galbramc / detail
fixed nightly warning on unused variable — allmaras / detail
Relax execution time — galbramc / detail
Changed isValid to check: qbar + qp at cell quads, and qbar, qbar + qpL and qbar + qpR for interior traces. These are the only values used in flux evaluation — hcarson / detail
Fix accross spelling. Fix AFLR3 to distribute in parallel. Update interior trace parallel construction. — galbramc / detail
Reduce maximum grid size for PDESourceOnly_Projection_btest — galbramc / detail
Add latest PETSc version — galbramc / detail
Nightly fix — galbramc / detail
Various CMake fixes — galbramc / detail
Fix for building Tetgen — galbramc / detail
Don't ues intel compiler to compile TetGen — galbramc / detail
Nightly fix — galbramc / detail
Relax tolerance for nightly test — galbramc / detail
Update refine, TetGen, and AFLR. Added ParameterDictList for a list of dictionaries. Rename MeanlineBlade to CamberBlade. — galbramc / detail
Correct AFLR version — galbramc / detail
Forgot tetgen patch — galbramc / detail
Various fixes — galbramc / detail
Fix library order — galbramc / detail
Relax ping tolerance — galbramc / detail
Comment out file dump — galbramc / detail
Nightly fixes — galbramc / detail
Add python UI for body force calculations. — galbramc / detail
Fix compile errors — galbramc / detail
Fix warning — galbramc / detail
Various compile fixes — galbramc / detail
Some small fixes — galbramc / detail
Fix interior trace partitioning — galbramc / detail

#267 (Oct 3, 2020, 9:17:42 AM)

First pass at structuring TCNE pde, a little messy — blsc / detail
TCNE stuff — ksabo / detail
relocate QauxvInterpret forward declaration in prep for 3D stuff — shunz / detail
Added basic stuff for 3D IBL — shunz / detail
Minor cleanup — shunz / detail
Initial pass on PDEIBL3D — shunz / detail
Filled in 3D IBL closure with fully 3D components set to zero — shunz / detail
Added BCNone for IBL3D — shunz / detail
added a working version of sandbox case for IBL3D — shunz / detail
Added a sheet grid of triangles in 3D for IBL3D — shunz / detail
Added instantiation — shunz / detail
Intermediate commit — shunz / detail
Working on integrands for first 3D IBL case — shunz / detail
More fixes to integrand classes for IBL3D — shunz / detail
Fixed instantiations for IBL3D — shunz / detail
Add explicit instantiations and fix typos in closure class — shunz / detail
Initial version of local Cartesian basis construction for 3D IBL — shunz / detail
Minor cleanup — shunz / detail
Fix constuction of q1 and q2 vectors in case of stagnation flows — shunz / detail
Add velocity gradient calculation in cell integrand of 3D IBL — shunz / detail
Refactor and add a 2D stagnation flow test case — shunz / detail
Add a 3D quad grid — shunz / detail
Update cmake list for unit grid test — shunz / detail
Fix typo in 3D quad sheet grid — shunz / detail
fix bug in qauxv gradient calculation in 3D IBL cell integrand — shunz / detail
Fix the scale and dimension of dissipation integral in 3D integral — shunz / detail
fix a typo in thickness identity — shunz / detail
Add more options to 3D IBL stagnation flow case, including quad grid, solution initialization, — shunz / detail
one more bug fix in cell integrand for 3D IBL — shunz / detail
Bugfix in calculation of trace unit normal vector for area cells in 3D — shunz / detail
Add Nishida's crossflow closure. Add pyrite check of stagnation flow case for 3D IBL. Minor addition for debugging in PDEIBL3D — shunz / detail
fix dependents of refactoring of GetSolnDofCell_IBL — shunz / detail
Add a 3D flat plate source panel method but haven't tested yet — shunz / detail
intermediate commit: minor clenaup and add guards. — shunz / detail
intermediate commit: working on 3D coupled IBL for torpedo cass — shunz / detail
add 3x3 equation system — shunz / detail
typo fix. add partial instantiations for system 3x3 vector and matrix types — shunz / detail
add linesearch data type for 3x3 equation system — shunz / detail
add missing include — shunz / detail
intermediate commit: fix many compiling errors in the way of running torpedo case for IBL3D. switching computer to continue the work... — shunz / detail
refactor projection to Qauxi — shunz / detail
add interior trace integrand for projection onto Qauxi — shunz / detail
minor fix — shunz / detail
add instantiations for IBL3D torpedo case — shunz / detail
add instantiations for coupled IBL3D — shunz / detail
remove unnecessary assert — shunz / detail
fix for coupled IBL case to compile and run — shunz / detail
fix uninitialized dummy DOFs — shunz / detail
fix setDOFFrom in Qauxv 3D (missing q_y previously) — shunz / detail
Coupled 3D IBL case converged on some simple variants of the torpedo case: linear and mildly nonlinear radial velocity distribution with attached laminar BLs — shunz / detail
Tried triangle grid as well: fine on radially linear velocity distribution but couldn't converge on a more nonlinear case — shunz / detail
cleaned up unused stuff — shunz / detail
refactor SetIBLoutputCellGroup to accommodate both 3D and 2D IBL — shunz / detail
remove outdated include — shunz / detail
more refactoring of SetIBLoutputCellGroup for 3D IBL. working progress. switching computer — shunz / detail
intermediate commit. switching computer. — shunz / detail
enable tecplot output for 3D IBL — shunz / detail
added PyDict options for Verbose and writeMarketMatrix for UMFPACK — allmaras / detail
add full-state BC for IBL3D with corresponding boundary trace integrand. verified on an uncoupled Blasius case — shunz / detail
add a coupled IBL3D Blasius case — shunz / detail
implement PTC for coupled IBL 3x3 system — shunz / detail
add commented-out stuff for turning off laminar amplification and lag equations in IBL3D — shunz / detail
fix typo in commented-out stuff — shunz / detail
enable rotated mesh for IBL3D torpedo case — shunz / detail
set up a torpedo with grid aligned with xy axes. turned off laminar amplification and lag equations [need to be brought back after testing purely laminar BLs] — shunz / detail
minor change to test case — shunz / detail
minor refactoring on Blasius inflow BC params — shunz / detail
rename test cases — shunz / detail
speed up panel-related jacobian calculation using cached influence matrix in place of surrealized qauxifld — shunz / detail
add jacobian timing for refactoring purpose — shunz / detail
add similar (to DBL3) Falkner-Skan inflow bc for IBL3D with non-constant inflow state. set up a tornado case with rotated xy grid to compare with DBL3 — shunz / detail
minor refactoring of test cases — shunz / detail
remove trivial zero z velocity component to speed up panel method — shunz / detail
minor refactoring — shunz / detail
typo fix — shunz / detail
precompute inviscid velocity for panel, which resulted in O(10) speedup in related residual calculation. fix DOF indexing in residual/jacobian precomputation — shunz / detail
define macro to comment off some lines for timing/refactoring — shunz / detail
minor comments — shunz / detail
add ping test for coupled IBL in 3x3 block system — shunz / detail
attempt to mirror tets in XField3D_Box_Tet_X1_WakeCut — allmaras / detail
reverted to original prism-split coding; remainder of code is hard-coded for the — allmaras / detail
fix typo in Cf2 closure, although it didn't change the torpedo case results much — shunz / detail
Fix dot for VectorBlock — galbramc / detail
added PyDict control of wake & Kutta Nitsche parameters — allmaras / detail
Added test of sourceCoarse and sourceFine for RANSSA with artificial viscosity. — blsc / detail
Added missing sourceCoarse and sourceFine functions from pressure gradient sensor and added unit test — blsc / detail
added PyDict solve check option to UMFPACK; currently commented out actual check — allmaras / detail
Fixes for checking the UMFPACK solve — galbramc / detail
Missed adding PDEEulermitAVDiffusion2D.h to the commit. This file has specialized versions of sourceCoarse and sourceFine for a param that is a H-tensor and distance function. — blsc / detail
add a wall term to dissipation relation of Nishida's closure, although it didn't affect things much — shunz / detail
add a test case of fx67-k-170 airfoil — shunz / detail
minor edit to output filenames at convergence failures — shunz / detail
resolve merge conflict — shunz / detail
changed default flux of IBL to LF flux — shunz / detail
add a test case for drag polar — shunz / detail
ran drag polar cases — shunz / detail
refactored reference speed in transition model — shunz / detail
typo fix — shunz / detail
rename working directory — shunz / detail
refator characteristic speed for PTC — shunz / detail
refator characteristic speed for PTC — shunz / detail
Add unit tests demonstrating that the step matrix calculation is stable to scaling — hcarson / detail
update pyrite files — shunz / detail
refactor 3D IBL closure API to allow for alternative closure models — shunz / detail
save 3D closure relations in a separate header — shunz / detail
add neural net closure for 3D IBL — shunz / detail
run drag polar on finer grids — shunz / detail
switch to run on acdl desktop — shunz / detail
fix memory leak warning caused by accessing index -1 — shunz / detail
minor update — shunz / detail
mucking with PETSc for IBL3 — shunz / detail
instantiate MKL_PARDISO solver for matrix block 3x3 — shunz / detail
tried MKL_PARDISO solver for IBL3 — shunz / detail
Adding test that Explicitly calculating the step from the metric directly is not unstable. Cases in 2D and 3D, showing stability to an AR of 2^10 in 3D, and 2^64 in 2D. — hcarson / detail
minor typo fix — shunz / detail
fix formatting — shunz / detail
add mitLG BC for IBL3 — shunz / detail
minor refactoring — shunz / detail
switch to the same input parameters as DBL3 — shunz / detail
add LF flux to IBL3 — shunz / detail
Changes to ErrorModel to allow for the new exact nodal metric calculation — hcarson / detail
Changes to ErrorModel to allow for the new exact nodal metric calculation — hcarson / detail
pre merge add.... wth? — hcarson / detail
add Dirichlet mitLG inflow BC to a Blasius flow test case — shunz / detail
Jenkins fix — hcarson / detail
reverting to the develop branch of ErrorModel — hcarson / detail
fixes to case — hcarson / detail
fixes to case — hcarson / detail
intermediate commit: added 4-equation neural net closure model. working on 4-equation IBL3D pde class — shunz / detail
remove extraneous tamplate keyword — shunz / detail
Various changes for arthur: Commented the adjoint_wo_p things from SolverInterface_VMSD_BR2, reducing the memory reqs. Made the Deltawing adapts more uniform and fit with the plan. Added the Solve case for the VMSD delta wing. — hcarson / detail
added soruce terms for the lateral curvature equation of IBL3 — shunz / detail
removed re-definition — shunz / detail
refactored and added PDE and BC for four-equation 3D IBL class. added a starting point for torpedo case — shunz / detail
separated classes of 3D IBL and IBLFourEqn — shunz / detail
generalized templates in IBL3-related integrands — shunz / detail
added instantiations for four-equation 3D IBL — shunz / detail
fixed instantiation typo — shunz / detail
turned on verbose linesearch printout — shunz / detail
added a visous-only Blasius case for 4-equation 3D IBL. added a missing include — shunz / detail
refactored reference coordinate gradient for speedup. add/edit comments for clarity — shunz / detail
typo fix: gradqe*E_qesq. minor edits — shunz / detail
turned off printout in unit testing — shunz / detail
cosmetic changes — shunz / detail
refactored neural net closure models: H22, Hd1, Hc2 — shunz / detail
added output for four-equation 3D IBL — shunz / detail
unit tests and associated modifications — ksabo / detail
fixed auxi equation (wall transpiration): previous mass flux missed crossflow component — shunz / detail
previous fix to wall transpiration (auxi equation) didn't fix. it is now fixed. added unit test — shunz / detail
minor tweak — shunz / detail
minor cleanup — shunz / detail
add velocity gradient output to IBL — shunz / detail
add instantiation — shunz / detail
added IBL3 closure relations in the form of analytic formulae — shunz / detail
tested something with git (still learning this thing) — ksabo / detail
salt deposit #1 (updated files I accidentally erased...) — ksabo / detail
refactored neural net closure implementation — shunz / detail
recoded jacobianMasterState method, still need to test it — ksabo / detail
added a set of IBL3 closure models based on analytic formulae — shunz / detail
restored four-equation neural net closure to its original working state — shunz / detail
switch to using 4-equation IBL3 closure based on analytic formulae. results are similar or slightly better than neural net closure — shunz / detail
fixed a typo (which fortunately wasn't used yet). added exception throws — shunz / detail
fixed include filename — shunz / detail
removed redundant exceptions — shunz / detail
Q1DConservative for TCNE is functionally completed (only needs aesthetic changes at this point) — ksabo / detail
refactored four-eqn IBL3 curve-fit closure — shunz / detail
conformed to vera check: should not use "using namespace" in header files — shunz / detail
fixed unit tests for after API refactoring — shunz / detail
fixed unit tests for the previous API refactoring — shunz / detail
fixed ping tests: finite difference step size — shunz / detail
added ping test for four-eqn IBL3 — shunz / detail
added Blasius flow test case for four-eqn IBL3D. some cleanup — shunz / detail
added include — shunz / detail
added includes — shunz / detail
checked four-eqn IBL3D on Blasius case and stagnation radial flow — shunz / detail
added a stagnation flow toy case. mucked with IBL3 for torpedo case — shunz / detail
fixed toy case to keep up with API refactoring — shunz / detail
added missing include related to MPI — shunz / detail
suppresed file dump in system test — shunz / detail
added assertions — shunz / detail
add some derivates to the IBL3 output — shunz / detail
relaxed pyrite tolerance — shunz / detail
relaxed pyrite tolerance for intel compiler. speed up ping test to avoid time-out — shunz / detail
renamed output — shunz / detail
added and refactored IBL3 output — shunz / detail
make verbose_ if-tests consistent throughout — allmaras / detail
fixed screen dump for checkSolve_ when residuals above tolerance — allmaras / detail
added option to dump solution at each Newton iteration — allmaras / detail
added pressure gradient for space-time — allmaras / detail
added instantiations, etc, needed for log(p) variables with look-up porosity/permeability tables — allmaras / detail
added grid-Laplacian artificial viscosity for pressure; currently hard-coded diffusion coefficient — allmaras / detail
trying to fix gnu9 compiler warning — shunz / detail
added "#include <utilities>" for std::move; added unit test for VectorBlock_3 — allmaras / detail
fixed vera line-length squawk — allmaras / detail
fixed vera line-length squawk — allmaras / detail
fixed vera line-length squawk — allmaras / detail
add a new curve fit model based on low-dissipative DBL3 data — shunz / detail
allow for uncoupled/viscou-only IBL3 solution by tweaking the panel method — shunz / detail
fixed VectorBlock_3 unit test; made ::m() and ::n() static, so 2, 3, and 4 are all consistent — allmaras / detail
forgot to save changes in the last commit... — shunz / detail
relaxed Jenkins timeout threshold for some large ping tests — shunz / detail
minor tweak — shunz / detail
speed up ping test by turning off some redundant sub-block checks — shunz / detail
fix cppcheck error — shunz / detail
speed up ping test by turning off tests on some sub-blocks of the jacobian — shunz / detail
added directory creation for output files — allmaras / detail
Don't use python2 with jenkins — galbramc / detail
removed old version of adjoint-compatible potential solver for Hershey wing — allmaras / detail
temporarily disabled tests involving artificial viscosity fluxes if USE_PRESSURE_AV defined — allmaras / detail
make VectorBlock test-suite names unique (so make unit_build works) — allmaras / detail
added unit tests for circulation integrations — allmaras / detail
added circulation integrations for lift & roll as functional outputs — allmaras / detail
Add Q3 and Q4 elements to Gmsh IO — galbramc / detail
clean-up of circulation-base functional code/test; added drag but #ifdef'ed out, as it's not complete — allmaras / detail
intermediate commit: working on hooking up PETSc for block algebraic equation system — shunz / detail
Fix finding macOS Accelerate BLAS — galbramc / detail
cppcheck fixes for nightly — allmaras / detail
moving back to develop — hcarson / detail
add empty definition to fix undefined reference in weekly test — shunz / detail
add empty definition to fix undefined reference in weekly test — shunz / detail
add empty definition to fix undefined reference in weekly test — shunz / detail
vera fix — hcarson / detail
added a new set of closure relations based on low-dissipation DBL3 data — shunz / detail
updated RthCf1 correlation coefficient — shunz / detail
fixed call to undefined function — shunz / detail
removing unneeded test — hcarson / detail
minor updates to TCNE stuff (getting back into it) — ksabo / detail
added mitLG BC for four equation IBL3D — shunz / detail
fixing unused var — hcarson / detail
Update for latest version of refine — galbramc / detail
missing space — hcarson / detail
Added vpr11@mit.edu to DeveloperEmailAddresses — vpr11 / detail
End of week dump. — ksabo / detail
added pressure jump into source for AV sensor in two-phase porous media — allmaras / detail
minor changes to SPE10 test case: added #ifdef's for log(pn), table lookup; changed — allmaras / detail
added #define label for pressure jump in AV sensor source; updated unit test — allmaras / detail
added new closure option (but commented off for now). updated system test case for four-eqn IBL3D on stagnation flow BL — shunz / detail
zero guard for smoothabs0 — allmaras / detail
updated unit tests to incorporate pressure jumps in sensor source for two-phase AV — allmaras / detail
Use 2 MPI processors on macOS with Jenkins. Make TetGen optional again. — galbramc / detail
Fix for finding boost — galbramc / detail
Some chemsitry model unit tests - need before source term testing. — ksabo / detail
Fix for 2 MPI procs on macOS — galbramc / detail
Various CMake fixes — galbramc / detail
Fix BuildBoost — galbramc / detail
vibrational relaxation time unit tests — ksabo / detail
LIP solver can consume CAPS mesh — galbramc / detail
Update minimum ESP version to 1.18 — galbramc / detail
Relax EGADS version requirement — galbramc / detail
Fix link error — galbramc / detail
Missed a file — galbramc / detail
More link error fixes — galbramc / detail
More link fixes — galbramc / detail
Exlicit Exception instantiations. Bias for Python 3 with CMake — galbramc / detail
added continuousGlobalMap() for block 2x2 AES — shunz / detail
PETSc now works for coupled IBL3 block AES 3x3 — shunz / detail
minor refactoring — shunz / detail
cleaned up and merged sandbox cases — shunz / detail
use reference velocity scale consistently — shunz / detail
turned on quasi-2D closure relations for 3-eq 3D IBL — shunz / detail
Missed one instantiation. More optional TetGen fixes — galbramc / detail
Various small fixes — galbramc / detail
added exceptions for petsc MPI implementations for block AES 3x3 — shunz / detail
turned off 3D IBL transition and lag equations for system test (for now) — shunz / detail
turned off some TBD MPI stuff in petsc block AES 3x3 to avoid compiling errors — shunz / detail
fixed unused variable warnings — shunz / detail
fix compiling error in sandbox case — shunz / detail
Added quasi-2D turbulent closure to four-eqn IBL3 formulation — shunz / detail
fixed deprecated macro — shunz / detail
First set of updates from cleaning up develop branch. Contains code and tests related to adding a spatially varying a-field (i.e. from previous adapt soln) in Homotopy — blsc / detail
Removed sourceCoarse and sourceFine in lieu of sourceTraceJump — galbramc / detail
Move Surreal into SANS namespace — galbramc / detail
Forgot a file — galbramc / detail
Missed MPI SurrealS — galbramc / detail
Add missing include — galbramc / detail
Remove SurrealS(Real,Real) constructor — galbramc / detail
More fixes for modified Surreal — galbramc / detail
Fix warnings — galbramc / detail
Setup to run VMSDBR2 on fixed Joukowski meshes — galbramc / detail
Fix uninitialized variable warnings — galbramc / detail
Fix vera warning — galbramc / detail
src/LinearAlgebra/ — blsc / detail
First pass at prototyping a globally constrained algebraic equation set — blsc / detail
Updates to globally constrained equations to include condensation of matrix in PETSc — blsc / detail
Updates for first round of parallelizing the homotopy — blsc / detail
Parallel homotopy appears to be working — blsc / detail
EGADS interface refactoring. Added meanline blade. — galbramc / detail
Fixes for EGTess — galbramc / detail
More fixes to the EGADS cleanup — galbramc / detail
More EGADS fixes — galbramc / detail
Fix compile error — galbramc / detail
Fix warning — galbramc / detail
Fix more warnings — galbramc / detail
A few tweeks on the homotopy and 3D set up — blsc / detail
Updated interface for globally constrained equations so the jacobian for the pde and the constraints are in seperate functions — blsc / detail
The small problem for static condensation is calculated on one processor then broadcast, that way there are on finite precision inconsistencies — blsc / detail
Added template parameter to determine if (PETSc) should do a shur complement from block 2x2. Note, if we're not using PETSc, then the block matrix is solved as is. This is because the shur complement is only a work around for parallel communication issues. — blsc / detail
... because if you hard code tecplot for 4 levels of grid refinement on output you get a 300Gb tecplot file in 3D ... — blsc / detail
Refactor CubicCamber. Add Normal vector field. — galbramc / detail
Forgot files — galbramc / detail
Add missing includes — galbramc / detail
Number of global constraints is now a runtime option. The global coupling uses a CRS matrix structure, as opposed to MatrixD, since the CRS structure is already there. — blsc / detail
Fixed bug with small system decomposition. The matrix was incorrectly sized for runtime constraints — blsc / detail
Fix field normal vector check for parallel — galbramc / detail
Resolved issues that came up due to merging — blsc / detail
First pass at prototyping a globally constrained algebraic equation set — blsc / detail
Updates to globally constrained equations to include condensation of matrix in PETSc — blsc / detail
Updates for first round of parallelizing the homotopy — blsc / detail
Parallel homotopy appears to be working — blsc / detail
A few tweeks on the homotopy and 3D set up — blsc / detail
Updated interface for globally constrained equations so the jacobian for the pde and the constraints are in seperate functions — blsc / detail
The small problem for static condensation is calculated on one processor then broadcast, that way there are on finite precision inconsistencies — blsc / detail
Added template parameter to determine if (PETSc) should do a shur complement from block 2x2. Note, if we're not using PETSc, then the block matrix is solved as is. This is because the shur complement is only a work around for parallel communication issues. — blsc / detail
... because if you hard code tecplot for 4 levels of grid refinement on output you get a 300Gb tecplot file in 3D ... — blsc / detail
Number of global constraints is now a runtime option. The global coupling uses a CRS matrix structure, as opposed to MatrixD, since the CRS structure is already there. — blsc / detail
Fixed bug with small system decomposition. The matrix was incorrectly sized for runtime constraints — blsc / detail
Clean up after merging from develop — blsc / detail
More merging issues — blsc / detail
Added RotorSource for Euler equations — galbramc / detail
Various small fixes — galbramc / detail
Fix compile error — galbramc / detail
A few more fixes — galbramc / detail
Fix unit test error — galbramc / detail
Bulk of unit tests done. — ksabo / detail
Update refine libraries — galbramc / detail
src/ — blsc / detail
Missing unit tests and ability to daisy chain globally constrained algebraic equation sets — blsc / detail
Missed an update for the serial version of PETSc — blsc / detail
Further speed improvements — galbramc / detail
Fix VMSDBR2 adjoint bug. Update refine build. — galbramc / detail
Some fixes for the Rotor source — galbramc / detail
Trying DG Normal vector field — galbramc / detail
Correction to Rotor source — galbramc / detail
One more fix to Rotor source — galbramc / detail
One more fix — galbramc / detail
updated file names — ksabo / detail
updated file names (round 2) — ksabo / detail
Fixed warnings and other minor things — ksabo / detail
150 char line error fix — ksabo / detail
used brackets for matrix call, fixed now — ksabo / detail
Some cleanup of PETSc Shur solve — galbramc / detail
Fixes for MKL with Block 2x2 — galbramc / detail
Bug fixes for homotopy and some 3D bugs — blsc / detail
Fixed a few bug (undefined param and timeout) — blsc / detail
fixed stack-buffer-overflow error in temperature data structures — ksabo / detail
Missing instantiations, BC that only existed for local testing purposes removed. — blsc / detail
fixed read access error from electron indexing bug — ksabo / detail
fixed compiler warnings — ksabo / detail
dropped tol to 1e-11 from 1e-12, removed extra {} that may have been causing an issue — ksabo / detail
renamed test suite (explicitly added TCNE to name) - was causing conflict error — ksabo / detail
SANS_Nightly fix, efma line compiler warning deleted — ksabo / detail
updated reverse reaction rate temperature calculations — ksabo / detail
Add trace quadrature checking to isValidCell_VMSD. — hcarson / detail
Refactored global constraintes — galbramc / detail
Forgot files — galbramc / detail
Compile fixes — galbramc / detail
Fix unit test — galbramc / detail
Added a new ParamFieldBuilder specialization for (log-permeability, porosity, gen-H) param fields. Added a unit test. — savithru / detail
added pde/IncompressibleNS — allmaras / detail
added 1D incompressible NS for fully developed channel flow with sansLG Robin BCs — allmaras / detail
added 2nd weighting parameter to weightBC; 1st parameter is for Dirichlet / adjoint state, — allmaras / detail
added 2nd weighting parameter to weightBC; missed one file — allmaras / detail
added Robin_sansLG BC catagory — allmaras / detail
IO file check flag -> true — allmaras / detail
1D incompressible NS solver for fully developed channel flow — allmaras / detail
bug fixes — allmaras / detail
Major refactor of the two-phase PDE classes to support a (log-permeability, porosity) param-field. The artificial viscosity classes use a (log-permeability, porosity, log-H) param-field. — savithru / detail
Updated ErrorEstimate_DGBR2 instantiations — savithru / detail
Updated tests. All unit and system tests compile now. — savithru / detail
added test for -Identity() initializer — allmaras / detail
Fix so -DLA::Identity() works properly — galbramc / detail
added BCs for 1D RANS-SA for channel flow — allmaras / detail
unit tests for 1D RANS-SA for channel flow — allmaras / detail
unit tests: missed one — allmaras / detail
unit test output pattern test files — allmaras / detail
1D RANS-SA test case for fully developed channel flow -- preliminary — allmaras / detail
updated test case — allmaras / detail
More refactoring to get sandbox cases to compile. — savithru / detail
Fixed a unit test. — savithru / detail
Missed a sandbox case. — savithru / detail
Reverting include path for boost output_test_stream — savithru / detail
made algebraic eqn-set files more consistent between Galerkin and Galerkin_Stabilized — allmaras / detail
instantiated VectorS<2> output — allmaras / detail
Updated discretizations and PDE interfaces to use both paramL and paramR when evaluating fluxAdvectiveUpwind or fluxAdvectiveUpwindSpaceTime. This is important for the two-phase flow PDE, where the temporal flux depends on the porosity param-field value (which can be heterogeneous). — savithru / detail
Update 2D ugrid reader for UNFORATTED (.r8.ugrid) files. — galbramc / detail
Fix warning — galbramc / detail
Fix warning — galbramc / detail
added Robin BC dot product tests; currently commented out, since they fail to compile — allmaras / detail
added Tensor-Vector dot-products: e.g. dot( VectorX, TensorMatrixQ ) — allmaras / detail
clean up: MatrixS<D,D,MatrixQ> -> TensorMatrixQ — allmaras / detail
needed additional #include's — allmaras / detail
added ND ctor for BCs: BC( PDE, BCArgs ) — allmaras / detail
added dist parameters to certain functions; added jacobianMasterState; code clean-up — allmaras / detail
added skin friction / drag output for 1D incompressible NS channel flow — allmaras / detail
added #if's to try different combinations of '(gradphi . K . nHat) betaBC^t rsdBC'; — allmaras / detail
Updated FV-TPFA discretization to work for heterogeneous properties + some cleanup. — savithru / detail
Added missing includes — savithru / detail
removed dot-products supporting (K . nHat) operator in Robin_sansLG BCs, and reverted — allmaras / detail
added IncompressibleNSLib to unit test builders — allmaras / detail
latest sandbox tests for 1D fully developed channel flow — allmaras / detail
Updated global contraints. Solve rotor speed at specified power. — galbramc / detail
Compile fixes — galbramc / detail
Add missing files — galbramc / detail
added optional parameter to output_gnuplot for number of points per element (default remains 11) — allmaras / detail
code cleanup for 1D NS/RANS — allmaras / detail
solution function for 1D RANS: analytic law-of-the-wall for SA — allmaras / detail
missed a pattern file — allmaras / detail
missed a unit test file — allmaras / detail
updated 1D RANS fully developed channel flow case to (a) work, (b) output useful data, — allmaras / detail
Fix all output functionals to properly work in parallel — galbramc / detail
name change for test suite to avoid link conflict for 'make unit' — allmaras / detail
Fix compile error — galbramc / detail
Compile fix — galbramc / detail
Missing include — galbramc / detail
More missing includes — galbramc / detail
More missing includes — galbramc / detail
reverted to depricated include directory for <boost/test/unit_test.hpp> — allmaras / detail
More missing include fixes — galbramc / detail
Upgrade to AFLR 10.8.7 — galbramc / detail
Update AFLR libraries — galbramc / detail
src/ — blsc / detail
Updated BC::isValidState interface so mitState BCs can check if the boundary state generated is also valid — blsc / detail
Removed file that didn't work out and shouldn't have been commited — blsc / detail
Fix AFLR library order — galbramc / detail
Formatting fixes — blsc / detail
Missing instantiation and arguments flipped causing a unit test to fail — blsc / detail
Fixes for AFLR4 and EGADS updates — galbramc / detail
Fix for wake sheets — galbramc / detail
Various small fixes — galbramc / detail
Allow specified interior traces — galbramc / detail
Compile fixes. Allow UnionJack to work in parallel — galbramc / detail
Fix compile error — galbramc / detail
removed 1D incompressible NS channel flow test case -- won't compile due to double — allmaras / detail
Fixes for parallel specified interior traces. Added ParkMMS and EntropyProduction output. — galbramc / detail
Forgot files — galbramc / detail
Fixes for parallel interior traces — galbramc / detail
Fix uninitialized data — galbramc / detail
Fix intel warning — galbramc / detail
Added new SPE10 cases for time-marching FV and DGBR2+AV. — savithru / detail
Fix parallel DG DOF indexing for multiple cell groups — galbramc / detail
fixes for jenkins squawks — allmaras / detail
Fix EG zombies — galbramc / detail
missing #include <vector> — allmaras / detail
fixed warning for un-used typedef — allmaras / detail
added isValidState with (x,time,nx,q) params for Dirichlet — allmaras / detail
Hardening ReadSolution_PX to throw uniformly across MPI if rank 0 fails to load the file. Can now use try catch around restart blocks! — hcarson / detail
fixed uninitialized variables in test — allmaras / detail
removed redundant instantiation — allmaras / detail
removed unneeded print statements and a typo — hcarson / detail
Nightly fixes — galbramc / detail
Various small fixes — galbramc / detail
Fix to erroneous logic — hcarson / detail
Make safe_at work for any container type, and reduce code duplication — hcarson / detail
Nightly fixes — galbramc / detail
More nightly fixes — galbramc / detail
fixed nightly warning on unused variable — allmaras / detail
Relax execution time — galbramc / detail
Changed isValid to check: qbar + qp at cell quads, and qbar, qbar + qpL and qbar + qpR for interior traces. These are the only values used in flux evaluation — hcarson / detail
Fix accross spelling. Fix AFLR3 to distribute in parallel. Update interior trace parallel construction. — galbramc / detail
Reduce maximum grid size for PDESourceOnly_Projection_btest — galbramc / detail
Add latest PETSc version — galbramc / detail
Nightly fix — galbramc / detail
Various CMake fixes — galbramc / detail
Fix for building Tetgen — galbramc / detail
Don't ues intel compiler to compile TetGen — galbramc / detail
Nightly fix — galbramc / detail
Relax tolerance for nightly test — galbramc / detail
Update refine, TetGen, and AFLR. Added ParameterDictList for a list of dictionaries. Rename MeanlineBlade to CamberBlade. — galbramc / detail
Correct AFLR version — galbramc / detail
Forgot tetgen patch — galbramc / detail
Various fixes — galbramc / detail
Fix library order — galbramc / detail
Relax ping tolerance — galbramc / detail
Comment out file dump — galbramc / detail
Nightly fixes — galbramc / detail

#266 (Sep 26, 2020, 1:52:07 AM)

First pass at structuring TCNE pde, a little messy — blsc / detail
TCNE stuff — ksabo / detail
relocate QauxvInterpret forward declaration in prep for 3D stuff — shunz / detail
Added basic stuff for 3D IBL — shunz / detail
Minor cleanup — shunz / detail
Initial pass on PDEIBL3D — shunz / detail
Filled in 3D IBL closure with fully 3D components set to zero — shunz / detail
Added BCNone for IBL3D — shunz / detail
added a working version of sandbox case for IBL3D — shunz / detail
Added a sheet grid of triangles in 3D for IBL3D — shunz / detail
Added instantiation — shunz / detail
Intermediate commit — shunz / detail
Working on integrands for first 3D IBL case — shunz / detail
More fixes to integrand classes for IBL3D — shunz / detail
Fixed instantiations for IBL3D — shunz / detail
Add explicit instantiations and fix typos in closure class — shunz / detail
Initial version of local Cartesian basis construction for 3D IBL — shunz / detail
Minor cleanup — shunz / detail
Fix constuction of q1 and q2 vectors in case of stagnation flows — shunz / detail
Add velocity gradient calculation in cell integrand of 3D IBL — shunz / detail
Refactor and add a 2D stagnation flow test case — shunz / detail
Add a 3D quad grid — shunz / detail
Update cmake list for unit grid test — shunz / detail
Fix typo in 3D quad sheet grid — shunz / detail
fix bug in qauxv gradient calculation in 3D IBL cell integrand — shunz / detail
Fix the scale and dimension of dissipation integral in 3D integral — shunz / detail
fix a typo in thickness identity — shunz / detail
Add more options to 3D IBL stagnation flow case, including quad grid, solution initialization, — shunz / detail
one more bug fix in cell integrand for 3D IBL — shunz / detail
Bugfix in calculation of trace unit normal vector for area cells in 3D — shunz / detail
Add Nishida's crossflow closure. Add pyrite check of stagnation flow case for 3D IBL. Minor addition for debugging in PDEIBL3D — shunz / detail
fix dependents of refactoring of GetSolnDofCell_IBL — shunz / detail
Add a 3D flat plate source panel method but haven't tested yet — shunz / detail
intermediate commit: minor clenaup and add guards. — shunz / detail
intermediate commit: working on 3D coupled IBL for torpedo cass — shunz / detail
add 3x3 equation system — shunz / detail
typo fix. add partial instantiations for system 3x3 vector and matrix types — shunz / detail
add linesearch data type for 3x3 equation system — shunz / detail
add missing include — shunz / detail
intermediate commit: fix many compiling errors in the way of running torpedo case for IBL3D. switching computer to continue the work... — shunz / detail
refactor projection to Qauxi — shunz / detail
add interior trace integrand for projection onto Qauxi — shunz / detail
minor fix — shunz / detail
add instantiations for IBL3D torpedo case — shunz / detail
add instantiations for coupled IBL3D — shunz / detail
remove unnecessary assert — shunz / detail
fix for coupled IBL case to compile and run — shunz / detail
fix uninitialized dummy DOFs — shunz / detail
fix setDOFFrom in Qauxv 3D (missing q_y previously) — shunz / detail
Coupled 3D IBL case converged on some simple variants of the torpedo case: linear and mildly nonlinear radial velocity distribution with attached laminar BLs — shunz / detail
Tried triangle grid as well: fine on radially linear velocity distribution but couldn't converge on a more nonlinear case — shunz / detail
cleaned up unused stuff — shunz / detail
refactor SetIBLoutputCellGroup to accommodate both 3D and 2D IBL — shunz / detail
remove outdated include — shunz / detail
more refactoring of SetIBLoutputCellGroup for 3D IBL. working progress. switching computer — shunz / detail
intermediate commit. switching computer. — shunz / detail
enable tecplot output for 3D IBL — shunz / detail
added PyDict options for Verbose and writeMarketMatrix for UMFPACK — allmaras / detail
add full-state BC for IBL3D with corresponding boundary trace integrand. verified on an uncoupled Blasius case — shunz / detail
add a coupled IBL3D Blasius case — shunz / detail
implement PTC for coupled IBL 3x3 system — shunz / detail
add commented-out stuff for turning off laminar amplification and lag equations in IBL3D — shunz / detail
fix typo in commented-out stuff — shunz / detail
enable rotated mesh for IBL3D torpedo case — shunz / detail
set up a torpedo with grid aligned with xy axes. turned off laminar amplification and lag equations [need to be brought back after testing purely laminar BLs] — shunz / detail
minor change to test case — shunz / detail
minor refactoring on Blasius inflow BC params — shunz / detail
rename test cases — shunz / detail
speed up panel-related jacobian calculation using cached influence matrix in place of surrealized qauxifld — shunz / detail
add jacobian timing for refactoring purpose — shunz / detail
add similar (to DBL3) Falkner-Skan inflow bc for IBL3D with non-constant inflow state. set up a tornado case with rotated xy grid to compare with DBL3 — shunz / detail
minor refactoring of test cases — shunz / detail
remove trivial zero z velocity component to speed up panel method — shunz / detail
minor refactoring — shunz / detail
typo fix — shunz / detail
precompute inviscid velocity for panel, which resulted in O(10) speedup in related residual calculation. fix DOF indexing in residual/jacobian precomputation — shunz / detail
define macro to comment off some lines for timing/refactoring — shunz / detail
minor comments — shunz / detail
add ping test for coupled IBL in 3x3 block system — shunz / detail
attempt to mirror tets in XField3D_Box_Tet_X1_WakeCut — allmaras / detail
reverted to original prism-split coding; remainder of code is hard-coded for the — allmaras / detail
fix typo in Cf2 closure, although it didn't change the torpedo case results much — shunz / detail
Fix dot for VectorBlock — galbramc / detail
added PyDict control of wake & Kutta Nitsche parameters — allmaras / detail
Added test of sourceCoarse and sourceFine for RANSSA with artificial viscosity. — blsc / detail
Added missing sourceCoarse and sourceFine functions from pressure gradient sensor and added unit test — blsc / detail
added PyDict solve check option to UMFPACK; currently commented out actual check — allmaras / detail
Fixes for checking the UMFPACK solve — galbramc / detail
Missed adding PDEEulermitAVDiffusion2D.h to the commit. This file has specialized versions of sourceCoarse and sourceFine for a param that is a H-tensor and distance function. — blsc / detail
add a wall term to dissipation relation of Nishida's closure, although it didn't affect things much — shunz / detail
add a test case of fx67-k-170 airfoil — shunz / detail
minor edit to output filenames at convergence failures — shunz / detail
resolve merge conflict — shunz / detail
changed default flux of IBL to LF flux — shunz / detail
add a test case for drag polar — shunz / detail
ran drag polar cases — shunz / detail
refactored reference speed in transition model — shunz / detail
typo fix — shunz / detail
rename working directory — shunz / detail
refator characteristic speed for PTC — shunz / detail
refator characteristic speed for PTC — shunz / detail
Add unit tests demonstrating that the step matrix calculation is stable to scaling — hcarson / detail
update pyrite files — shunz / detail
refactor 3D IBL closure API to allow for alternative closure models — shunz / detail
save 3D closure relations in a separate header — shunz / detail
add neural net closure for 3D IBL — shunz / detail
run drag polar on finer grids — shunz / detail
switch to run on acdl desktop — shunz / detail
fix memory leak warning caused by accessing index -1 — shunz / detail
minor update — shunz / detail
mucking with PETSc for IBL3 — shunz / detail
instantiate MKL_PARDISO solver for matrix block 3x3 — shunz / detail
tried MKL_PARDISO solver for IBL3 — shunz / detail
Adding test that Explicitly calculating the step from the metric directly is not unstable. Cases in 2D and 3D, showing stability to an AR of 2^10 in 3D, and 2^64 in 2D. — hcarson / detail
minor typo fix — shunz / detail
fix formatting — shunz / detail
add mitLG BC for IBL3 — shunz / detail
minor refactoring — shunz / detail
switch to the same input parameters as DBL3 — shunz / detail
add LF flux to IBL3 — shunz / detail
Changes to ErrorModel to allow for the new exact nodal metric calculation — hcarson / detail
Changes to ErrorModel to allow for the new exact nodal metric calculation — hcarson / detail
pre merge add.... wth? — hcarson / detail
add Dirichlet mitLG inflow BC to a Blasius flow test case — shunz / detail
Jenkins fix — hcarson / detail
reverting to the develop branch of ErrorModel — hcarson / detail
fixes to case — hcarson / detail
fixes to case — hcarson / detail
intermediate commit: added 4-equation neural net closure model. working on 4-equation IBL3D pde class — shunz / detail
remove extraneous tamplate keyword — shunz / detail
Various changes for arthur: Commented the adjoint_wo_p things from SolverInterface_VMSD_BR2, reducing the memory reqs. Made the Deltawing adapts more uniform and fit with the plan. Added the Solve case for the VMSD delta wing. — hcarson / detail
added soruce terms for the lateral curvature equation of IBL3 — shunz / detail
removed re-definition — shunz / detail
refactored and added PDE and BC for four-equation 3D IBL class. added a starting point for torpedo case — shunz / detail
separated classes of 3D IBL and IBLFourEqn — shunz / detail
generalized templates in IBL3-related integrands — shunz / detail
added instantiations for four-equation 3D IBL — shunz / detail
fixed instantiation typo — shunz / detail
turned on verbose linesearch printout — shunz / detail
added a visous-only Blasius case for 4-equation 3D IBL. added a missing include — shunz / detail
refactored reference coordinate gradient for speedup. add/edit comments for clarity — shunz / detail
typo fix: gradqe*E_qesq. minor edits — shunz / detail
turned off printout in unit testing — shunz / detail
cosmetic changes — shunz / detail
refactored neural net closure models: H22, Hd1, Hc2 — shunz / detail
added output for four-equation 3D IBL — shunz / detail
unit tests and associated modifications — ksabo / detail
fixed auxi equation (wall transpiration): previous mass flux missed crossflow component — shunz / detail
previous fix to wall transpiration (auxi equation) didn't fix. it is now fixed. added unit test — shunz / detail
minor tweak — shunz / detail
minor cleanup — shunz / detail
add velocity gradient output to IBL — shunz / detail
add instantiation — shunz / detail
added IBL3 closure relations in the form of analytic formulae — shunz / detail
tested something with git (still learning this thing) — ksabo / detail
salt deposit #1 (updated files I accidentally erased...) — ksabo / detail
refactored neural net closure implementation — shunz / detail
recoded jacobianMasterState method, still need to test it — ksabo / detail
added a set of IBL3 closure models based on analytic formulae — shunz / detail
restored four-equation neural net closure to its original working state — shunz / detail
switch to using 4-equation IBL3 closure based on analytic formulae. results are similar or slightly better than neural net closure — shunz / detail
fixed a typo (which fortunately wasn't used yet). added exception throws — shunz / detail
fixed include filename — shunz / detail
removed redundant exceptions — shunz / detail
Q1DConservative for TCNE is functionally completed (only needs aesthetic changes at this point) — ksabo / detail
refactored four-eqn IBL3 curve-fit closure — shunz / detail
conformed to vera check: should not use "using namespace" in header files — shunz / detail
fixed unit tests for after API refactoring — shunz / detail
fixed unit tests for the previous API refactoring — shunz / detail
fixed ping tests: finite difference step size — shunz / detail
added ping test for four-eqn IBL3 — shunz / detail
added Blasius flow test case for four-eqn IBL3D. some cleanup — shunz / detail
added include — shunz / detail
added includes — shunz / detail
checked four-eqn IBL3D on Blasius case and stagnation radial flow — shunz / detail
added a stagnation flow toy case. mucked with IBL3 for torpedo case — shunz / detail
fixed toy case to keep up with API refactoring — shunz / detail
added missing include related to MPI — shunz / detail
suppresed file dump in system test — shunz / detail
added assertions — shunz / detail
add some derivates to the IBL3 output — shunz / detail
relaxed pyrite tolerance — shunz / detail
relaxed pyrite tolerance for intel compiler. speed up ping test to avoid time-out — shunz / detail
renamed output — shunz / detail
added and refactored IBL3 output — shunz / detail
make verbose_ if-tests consistent throughout — allmaras / detail
fixed screen dump for checkSolve_ when residuals above tolerance — allmaras / detail
added option to dump solution at each Newton iteration — allmaras / detail
added pressure gradient for space-time — allmaras / detail
added instantiations, etc, needed for log(p) variables with look-up porosity/permeability tables — allmaras / detail
added grid-Laplacian artificial viscosity for pressure; currently hard-coded diffusion coefficient — allmaras / detail
trying to fix gnu9 compiler warning — shunz / detail
added "#include <utilities>" for std::move; added unit test for VectorBlock_3 — allmaras / detail
fixed vera line-length squawk — allmaras / detail
fixed vera line-length squawk — allmaras / detail
fixed vera line-length squawk — allmaras / detail
add a new curve fit model based on low-dissipative DBL3 data — shunz / detail
allow for uncoupled/viscou-only IBL3 solution by tweaking the panel method — shunz / detail
fixed VectorBlock_3 unit test; made ::m() and ::n() static, so 2, 3, and 4 are all consistent — allmaras / detail
forgot to save changes in the last commit... — shunz / detail
relaxed Jenkins timeout threshold for some large ping tests — shunz / detail
minor tweak — shunz / detail
speed up ping test by turning off some redundant sub-block checks — shunz / detail
fix cppcheck error — shunz / detail
speed up ping test by turning off tests on some sub-blocks of the jacobian — shunz / detail
added directory creation for output files — allmaras / detail
Don't use python2 with jenkins — galbramc / detail
removed old version of adjoint-compatible potential solver for Hershey wing — allmaras / detail
temporarily disabled tests involving artificial viscosity fluxes if USE_PRESSURE_AV defined — allmaras / detail
make VectorBlock test-suite names unique (so make unit_build works) — allmaras / detail
added unit tests for circulation integrations — allmaras / detail
added circulation integrations for lift & roll as functional outputs — allmaras / detail
Add Q3 and Q4 elements to Gmsh IO — galbramc / detail
clean-up of circulation-base functional code/test; added drag but #ifdef'ed out, as it's not complete — allmaras / detail
intermediate commit: working on hooking up PETSc for block algebraic equation system — shunz / detail
Fix finding macOS Accelerate BLAS — galbramc / detail
cppcheck fixes for nightly — allmaras / detail
moving back to develop — hcarson / detail
add empty definition to fix undefined reference in weekly test — shunz / detail
add empty definition to fix undefined reference in weekly test — shunz / detail
add empty definition to fix undefined reference in weekly test — shunz / detail
vera fix — hcarson / detail
added a new set of closure relations based on low-dissipation DBL3 data — shunz / detail
updated RthCf1 correlation coefficient — shunz / detail
fixed call to undefined function — shunz / detail
removing unneeded test — hcarson / detail
minor updates to TCNE stuff (getting back into it) — ksabo / detail
added mitLG BC for four equation IBL3D — shunz / detail
fixing unused var — hcarson / detail
Update for latest version of refine — galbramc / detail
missing space — hcarson / detail
Added vpr11@mit.edu to DeveloperEmailAddresses — vpr11 / detail
End of week dump. — ksabo / detail
added pressure jump into source for AV sensor in two-phase porous media — allmaras / detail
minor changes to SPE10 test case: added #ifdef's for log(pn), table lookup; changed — allmaras / detail
added #define label for pressure jump in AV sensor source; updated unit test — allmaras / detail
added new closure option (but commented off for now). updated system test case for four-eqn IBL3D on stagnation flow BL — shunz / detail
zero guard for smoothabs0 — allmaras / detail
updated unit tests to incorporate pressure jumps in sensor source for two-phase AV — allmaras / detail
Use 2 MPI processors on macOS with Jenkins. Make TetGen optional again. — galbramc / detail
Fix for finding boost — galbramc / detail
Some chemsitry model unit tests - need before source term testing. — ksabo / detail
Fix for 2 MPI procs on macOS — galbramc / detail
Various CMake fixes — galbramc / detail
Fix BuildBoost — galbramc / detail
vibrational relaxation time unit tests — ksabo / detail
LIP solver can consume CAPS mesh — galbramc / detail
Update minimum ESP version to 1.18 — galbramc / detail
Relax EGADS version requirement — galbramc / detail
Fix link error — galbramc / detail
Missed a file — galbramc / detail
More link error fixes — galbramc / detail
More link fixes — galbramc / detail
Exlicit Exception instantiations. Bias for Python 3 with CMake — galbramc / detail
added continuousGlobalMap() for block 2x2 AES — shunz / detail
PETSc now works for coupled IBL3 block AES 3x3 — shunz / detail
minor refactoring — shunz / detail
cleaned up and merged sandbox cases — shunz / detail
use reference velocity scale consistently — shunz / detail
turned on quasi-2D closure relations for 3-eq 3D IBL — shunz / detail
Missed one instantiation. More optional TetGen fixes — galbramc / detail
Various small fixes — galbramc / detail
added exceptions for petsc MPI implementations for block AES 3x3 — shunz / detail
turned off 3D IBL transition and lag equations for system test (for now) — shunz / detail
turned off some TBD MPI stuff in petsc block AES 3x3 to avoid compiling errors — shunz / detail
fixed unused variable warnings — shunz / detail
fix compiling error in sandbox case — shunz / detail
Added quasi-2D turbulent closure to four-eqn IBL3 formulation — shunz / detail
fixed deprecated macro — shunz / detail
First set of updates from cleaning up develop branch. Contains code and tests related to adding a spatially varying a-field (i.e. from previous adapt soln) in Homotopy — blsc / detail
Removed sourceCoarse and sourceFine in lieu of sourceTraceJump — galbramc / detail
Move Surreal into SANS namespace — galbramc / detail
Forgot a file — galbramc / detail
Missed MPI SurrealS — galbramc / detail
Add missing include — galbramc / detail
Remove SurrealS(Real,Real) constructor — galbramc / detail
More fixes for modified Surreal — galbramc / detail
Fix warnings — galbramc / detail
Setup to run VMSDBR2 on fixed Joukowski meshes — galbramc / detail
Fix uninitialized variable warnings — galbramc / detail
Fix vera warning — galbramc / detail
src/LinearAlgebra/ — blsc / detail
First pass at prototyping a globally constrained algebraic equation set — blsc / detail
Updates to globally constrained equations to include condensation of matrix in PETSc — blsc / detail
Updates for first round of parallelizing the homotopy — blsc / detail
Parallel homotopy appears to be working — blsc / detail
EGADS interface refactoring. Added meanline blade. — galbramc / detail
Fixes for EGTess — galbramc / detail
More fixes to the EGADS cleanup — galbramc / detail
More EGADS fixes — galbramc / detail
Fix compile error — galbramc / detail
Fix warning — galbramc / detail
Fix more warnings — galbramc / detail
A few tweeks on the homotopy and 3D set up — blsc / detail
Updated interface for globally constrained equations so the jacobian for the pde and the constraints are in seperate functions — blsc / detail
The small problem for static condensation is calculated on one processor then broadcast, that way there are on finite precision inconsistencies — blsc / detail
Added template parameter to determine if (PETSc) should do a shur complement from block 2x2. Note, if we're not using PETSc, then the block matrix is solved as is. This is because the shur complement is only a work around for parallel communication issues. — blsc / detail
... because if you hard code tecplot for 4 levels of grid refinement on output you get a 300Gb tecplot file in 3D ... — blsc / detail
Refactor CubicCamber. Add Normal vector field. — galbramc / detail
Forgot files — galbramc / detail
Add missing includes — galbramc / detail
Number of global constraints is now a runtime option. The global coupling uses a CRS matrix structure, as opposed to MatrixD, since the CRS structure is already there. — blsc / detail
Fixed bug with small system decomposition. The matrix was incorrectly sized for runtime constraints — blsc / detail
Fix field normal vector check for parallel — galbramc / detail
Resolved issues that came up due to merging — blsc / detail
First pass at prototyping a globally constrained algebraic equation set — blsc / detail
Updates to globally constrained equations to include condensation of matrix in PETSc — blsc / detail
Updates for first round of parallelizing the homotopy — blsc / detail
Parallel homotopy appears to be working — blsc / detail
A few tweeks on the homotopy and 3D set up — blsc / detail
Updated interface for globally constrained equations so the jacobian for the pde and the constraints are in seperate functions — blsc / detail
The small problem for static condensation is calculated on one processor then broadcast, that way there are on finite precision inconsistencies — blsc / detail
Added template parameter to determine if (PETSc) should do a shur complement from block 2x2. Note, if we're not using PETSc, then the block matrix is solved as is. This is because the shur complement is only a work around for parallel communication issues. — blsc / detail
... because if you hard code tecplot for 4 levels of grid refinement on output you get a 300Gb tecplot file in 3D ... — blsc / detail
Number of global constraints is now a runtime option. The global coupling uses a CRS matrix structure, as opposed to MatrixD, since the CRS structure is already there. — blsc / detail
Fixed bug with small system decomposition. The matrix was incorrectly sized for runtime constraints — blsc / detail
Clean up after merging from develop — blsc / detail
More merging issues — blsc / detail
Added RotorSource for Euler equations — galbramc / detail
Various small fixes — galbramc / detail
Fix compile error — galbramc / detail
A few more fixes — galbramc / detail
Fix unit test error — galbramc / detail
Bulk of unit tests done. — ksabo / detail
Update refine libraries — galbramc / detail
src/ — blsc / detail
Missing unit tests and ability to daisy chain globally constrained algebraic equation sets — blsc / detail
Missed an update for the serial version of PETSc — blsc / detail
Further speed improvements — galbramc / detail
Fix VMSDBR2 adjoint bug. Update refine build. — galbramc / detail
Some fixes for the Rotor source — galbramc / detail
Trying DG Normal vector field — galbramc / detail
Correction to Rotor source — galbramc / detail
One more fix to Rotor source — galbramc / detail
One more fix — galbramc / detail
updated file names — ksabo / detail
updated file names (round 2) — ksabo / detail
Fixed warnings and other minor things — ksabo / detail
150 char line error fix — ksabo / detail
used brackets for matrix call, fixed now — ksabo / detail
Some cleanup of PETSc Shur solve — galbramc / detail
Fixes for MKL with Block 2x2 — galbramc / detail
Bug fixes for homotopy and some 3D bugs — blsc / detail
Fixed a few bug (undefined param and timeout) — blsc / detail
fixed stack-buffer-overflow error in temperature data structures — ksabo / detail
Missing instantiations, BC that only existed for local testing purposes removed. — blsc / detail
fixed read access error from electron indexing bug — ksabo / detail
fixed compiler warnings — ksabo / detail
dropped tol to 1e-11 from 1e-12, removed extra {} that may have been causing an issue — ksabo / detail
renamed test suite (explicitly added TCNE to name) - was causing conflict error — ksabo / detail
SANS_Nightly fix, efma line compiler warning deleted — ksabo / detail
updated reverse reaction rate temperature calculations — ksabo / detail
Add trace quadrature checking to isValidCell_VMSD. — hcarson / detail
Refactored global constraintes — galbramc / detail
Forgot files — galbramc / detail
Compile fixes — galbramc / detail
Fix unit test — galbramc / detail
Added a new ParamFieldBuilder specialization for (log-permeability, porosity, gen-H) param fields. Added a unit test. — savithru / detail
added pde/IncompressibleNS — allmaras / detail
added 1D incompressible NS for fully developed channel flow with sansLG Robin BCs — allmaras / detail
added 2nd weighting parameter to weightBC; 1st parameter is for Dirichlet / adjoint state, — allmaras / detail
added 2nd weighting parameter to weightBC; missed one file — allmaras / detail
added Robin_sansLG BC catagory — allmaras / detail
IO file check flag -> true — allmaras / detail
1D incompressible NS solver for fully developed channel flow — allmaras / detail
bug fixes — allmaras / detail
Major refactor of the two-phase PDE classes to support a (log-permeability, porosity) param-field. The artificial viscosity classes use a (log-permeability, porosity, log-H) param-field. — savithru / detail
Updated ErrorEstimate_DGBR2 instantiations — savithru / detail
Updated tests. All unit and system tests compile now. — savithru / detail
added test for -Identity() initializer — allmaras / detail
Fix so -DLA::Identity() works properly — galbramc / detail
added BCs for 1D RANS-SA for channel flow — allmaras / detail
unit tests for 1D RANS-SA for channel flow — allmaras / detail
unit tests: missed one — allmaras / detail
unit test output pattern test files — allmaras / detail
1D RANS-SA test case for fully developed channel flow -- preliminary — allmaras / detail
updated test case — allmaras / detail
More refactoring to get sandbox cases to compile. — savithru / detail
Fixed a unit test. — savithru / detail
Missed a sandbox case. — savithru / detail
Reverting include path for boost output_test_stream — savithru / detail
made algebraic eqn-set files more consistent between Galerkin and Galerkin_Stabilized — allmaras / detail
instantiated VectorS<2> output — allmaras / detail
Updated discretizations and PDE interfaces to use both paramL and paramR when evaluating fluxAdvectiveUpwind or fluxAdvectiveUpwindSpaceTime. This is important for the two-phase flow PDE, where the temporal flux depends on the porosity param-field value (which can be heterogeneous). — savithru / detail
Update 2D ugrid reader for UNFORATTED (.r8.ugrid) files. — galbramc / detail
Fix warning — galbramc / detail
Fix warning — galbramc / detail
added Robin BC dot product tests; currently commented out, since they fail to compile — allmaras / detail
added Tensor-Vector dot-products: e.g. dot( VectorX, TensorMatrixQ ) — allmaras / detail
clean up: MatrixS<D,D,MatrixQ> -> TensorMatrixQ — allmaras / detail
needed additional #include's — allmaras / detail
added ND ctor for BCs: BC( PDE, BCArgs ) — allmaras / detail
added dist parameters to certain functions; added jacobianMasterState; code clean-up — allmaras / detail
added skin friction / drag output for 1D incompressible NS channel flow — allmaras / detail
added #if's to try different combinations of '(gradphi . K . nHat) betaBC^t rsdBC'; — allmaras / detail
Updated FV-TPFA discretization to work for heterogeneous properties + some cleanup. — savithru / detail
Added missing includes — savithru / detail
removed dot-products supporting (K . nHat) operator in Robin_sansLG BCs, and reverted — allmaras / detail
added IncompressibleNSLib to unit test builders — allmaras / detail
latest sandbox tests for 1D fully developed channel flow — allmaras / detail
Updated global contraints. Solve rotor speed at specified power. — galbramc / detail
Compile fixes — galbramc / detail
Add missing files — galbramc / detail
added optional parameter to output_gnuplot for number of points per element (default remains 11) — allmaras / detail
code cleanup for 1D NS/RANS — allmaras / detail
solution function for 1D RANS: analytic law-of-the-wall for SA — allmaras / detail
missed a pattern file — allmaras / detail
missed a unit test file — allmaras / detail
updated 1D RANS fully developed channel flow case to (a) work, (b) output useful data, — allmaras / detail
Fix all output functionals to properly work in parallel — galbramc / detail
name change for test suite to avoid link conflict for 'make unit' — allmaras / detail
Fix compile error — galbramc / detail
Compile fix — galbramc / detail
Missing include — galbramc / detail
More missing includes — galbramc / detail
More missing includes — galbramc / detail
reverted to depricated include directory for <boost/test/unit_test.hpp> — allmaras / detail
More missing include fixes — galbramc / detail
Upgrade to AFLR 10.8.7 — galbramc / detail
Update AFLR libraries — galbramc / detail
src/ — blsc / detail
Updated BC::isValidState interface so mitState BCs can check if the boundary state generated is also valid — blsc / detail
Removed file that didn't work out and shouldn't have been commited — blsc / detail
Fix AFLR library order — galbramc / detail
Formatting fixes — blsc / detail
Missing instantiation and arguments flipped causing a unit test to fail — blsc / detail
Fixes for AFLR4 and EGADS updates — galbramc / detail
Fix for wake sheets — galbramc / detail
Various small fixes — galbramc / detail
Allow specified interior traces — galbramc / detail
Compile fixes. Allow UnionJack to work in parallel — galbramc / detail
Fix compile error — galbramc / detail
removed 1D incompressible NS channel flow test case -- won't compile due to double — allmaras / detail
Fixes for parallel specified interior traces. Added ParkMMS and EntropyProduction output. — galbramc / detail
Forgot files — galbramc / detail
Fixes for parallel interior traces — galbramc / detail
Fix uninitialized data — galbramc / detail
Fix intel warning — galbramc / detail
Added new SPE10 cases for time-marching FV and DGBR2+AV. — savithru / detail
Fix parallel DG DOF indexing for multiple cell groups — galbramc / detail
fixes for jenkins squawks — allmaras / detail
Fix EG zombies — galbramc / detail
missing #include <vector> — allmaras / detail
fixed warning for un-used typedef — allmaras / detail
added isValidState with (x,time,nx,q) params for Dirichlet — allmaras / detail
Hardening ReadSolution_PX to throw uniformly across MPI if rank 0 fails to load the file. Can now use try catch around restart blocks! — hcarson / detail
fixed uninitialized variables in test — allmaras / detail
removed redundant instantiation — allmaras / detail
removed unneeded print statements and a typo — hcarson / detail
Nightly fixes — galbramc / detail
Various small fixes — galbramc / detail
Fix to erroneous logic — hcarson / detail
Make safe_at work for any container type, and reduce code duplication — hcarson / detail
Nightly fixes — galbramc / detail
More nightly fixes — galbramc / detail
fixed nightly warning on unused variable — allmaras / detail
Relax execution time — galbramc / detail
Changed isValid to check: qbar + qp at cell quads, and qbar, qbar + qpL and qbar + qpR for interior traces. These are the only values used in flux evaluation — hcarson / detail

#265 (Jun 20, 2020, 2:49:59 AM)

relocate QauxvInterpret forward declaration in prep for 3D stuff — shunz / detail
Added basic stuff for 3D IBL — shunz / detail
Minor cleanup — shunz / detail
Initial pass on PDEIBL3D — shunz / detail
Filled in 3D IBL closure with fully 3D components set to zero — shunz / detail
Added BCNone for IBL3D — shunz / detail
added a working version of sandbox case for IBL3D — shunz / detail
Added a sheet grid of triangles in 3D for IBL3D — shunz / detail
Added instantiation — shunz / detail
Intermediate commit — shunz / detail
Working on integrands for first 3D IBL case — shunz / detail
More fixes to integrand classes for IBL3D — shunz / detail
Fixed instantiations for IBL3D — shunz / detail
Add explicit instantiations and fix typos in closure class — shunz / detail
Initial version of local Cartesian basis construction for 3D IBL — shunz / detail
Minor cleanup — shunz / detail
Fix constuction of q1 and q2 vectors in case of stagnation flows — shunz / detail
Add velocity gradient calculation in cell integrand of 3D IBL — shunz / detail
Refactor and add a 2D stagnation flow test case — shunz / detail
Add a 3D quad grid — shunz / detail
Update cmake list for unit grid test — shunz / detail
Fix typo in 3D quad sheet grid — shunz / detail
fix bug in qauxv gradient calculation in 3D IBL cell integrand — shunz / detail
Fix the scale and dimension of dissipation integral in 3D integral — shunz / detail
fix a typo in thickness identity — shunz / detail
Add more options to 3D IBL stagnation flow case, including quad grid, solution initialization, — shunz / detail
one more bug fix in cell integrand for 3D IBL — shunz / detail
Bugfix in calculation of trace unit normal vector for area cells in 3D — shunz / detail
Add Nishida's crossflow closure. Add pyrite check of stagnation flow case for 3D IBL. Minor addition for debugging in PDEIBL3D — shunz / detail
fix dependents of refactoring of GetSolnDofCell_IBL — shunz / detail
Add a 3D flat plate source panel method but haven't tested yet — shunz / detail
intermediate commit: minor clenaup and add guards. — shunz / detail
intermediate commit: working on 3D coupled IBL for torpedo cass — shunz / detail
add 3x3 equation system — shunz / detail
typo fix. add partial instantiations for system 3x3 vector and matrix types — shunz / detail
add linesearch data type for 3x3 equation system — shunz / detail
add missing include — shunz / detail
intermediate commit: fix many compiling errors in the way of running torpedo case for IBL3D. switching computer to continue the work... — shunz / detail
refactor projection to Qauxi — shunz / detail
add interior trace integrand for projection onto Qauxi — shunz / detail
minor fix — shunz / detail
add instantiations for IBL3D torpedo case — shunz / detail
add instantiations for coupled IBL3D — shunz / detail
remove unnecessary assert — shunz / detail
fix for coupled IBL case to compile and run — shunz / detail
fix uninitialized dummy DOFs — shunz / detail
fix setDOFFrom in Qauxv 3D (missing q_y previously) — shunz / detail
Coupled 3D IBL case converged on some simple variants of the torpedo case: linear and mildly nonlinear radial velocity distribution with attached laminar BLs — shunz / detail
Tried triangle grid as well: fine on radially linear velocity distribution but couldn't converge on a more nonlinear case — shunz / detail
cleaned up unused stuff — shunz / detail
refactor SetIBLoutputCellGroup to accommodate both 3D and 2D IBL — shunz / detail
remove outdated include — shunz / detail
more refactoring of SetIBLoutputCellGroup for 3D IBL. working progress. switching computer — shunz / detail
intermediate commit. switching computer. — shunz / detail
enable tecplot output for 3D IBL — shunz / detail
added PyDict options for Verbose and writeMarketMatrix for UMFPACK — allmaras / detail
add full-state BC for IBL3D with corresponding boundary trace integrand. verified on an uncoupled Blasius case — shunz / detail
add a coupled IBL3D Blasius case — shunz / detail
implement PTC for coupled IBL 3x3 system — shunz / detail
add commented-out stuff for turning off laminar amplification and lag equations in IBL3D — shunz / detail
fix typo in commented-out stuff — shunz / detail
enable rotated mesh for IBL3D torpedo case — shunz / detail
set up a torpedo with grid aligned with xy axes. turned off laminar amplification and lag equations [need to be brought back after testing purely laminar BLs] — shunz / detail
minor change to test case — shunz / detail
minor refactoring on Blasius inflow BC params — shunz / detail
rename test cases — shunz / detail
speed up panel-related jacobian calculation using cached influence matrix in place of surrealized qauxifld — shunz / detail
add jacobian timing for refactoring purpose — shunz / detail
add similar (to DBL3) Falkner-Skan inflow bc for IBL3D with non-constant inflow state. set up a tornado case with rotated xy grid to compare with DBL3 — shunz / detail
minor refactoring of test cases — shunz / detail
remove trivial zero z velocity component to speed up panel method — shunz / detail
minor refactoring — shunz / detail
typo fix — shunz / detail
precompute inviscid velocity for panel, which resulted in O(10) speedup in related residual calculation. fix DOF indexing in residual/jacobian precomputation — shunz / detail
define macro to comment off some lines for timing/refactoring — shunz / detail
minor comments — shunz / detail
add ping test for coupled IBL in 3x3 block system — shunz / detail
attempt to mirror tets in XField3D_Box_Tet_X1_WakeCut — allmaras / detail
reverted to original prism-split coding; remainder of code is hard-coded for the — allmaras / detail
fix typo in Cf2 closure, although it didn't change the torpedo case results much — shunz / detail
Fix dot for VectorBlock — galbramc / detail
added PyDict control of wake & Kutta Nitsche parameters — allmaras / detail
added PyDict solve check option to UMFPACK; currently commented out actual check — allmaras / detail
Fixes for checking the UMFPACK solve — galbramc / detail
add a wall term to dissipation relation of Nishida's closure, although it didn't affect things much — shunz / detail
add a test case of fx67-k-170 airfoil — shunz / detail
minor edit to output filenames at convergence failures — shunz / detail
resolve merge conflict — shunz / detail
changed default flux of IBL to LF flux — shunz / detail
add a test case for drag polar — shunz / detail
ran drag polar cases — shunz / detail
refactored reference speed in transition model — shunz / detail
typo fix — shunz / detail
rename working directory — shunz / detail
refator characteristic speed for PTC — shunz / detail
refator characteristic speed for PTC — shunz / detail
Add unit tests demonstrating that the step matrix calculation is stable to scaling — hcarson / detail
update pyrite files — shunz / detail
refactor 3D IBL closure API to allow for alternative closure models — shunz / detail
save 3D closure relations in a separate header — shunz / detail
add neural net closure for 3D IBL — shunz / detail
run drag polar on finer grids — shunz / detail
switch to run on acdl desktop — shunz / detail
fix memory leak warning caused by accessing index -1 — shunz / detail
minor update — shunz / detail
mucking with PETSc for IBL3 — shunz / detail
instantiate MKL_PARDISO solver for matrix block 3x3 — shunz / detail
tried MKL_PARDISO solver for IBL3 — shunz / detail
Adding test that Explicitly calculating the step from the metric directly is not unstable. Cases in 2D and 3D, showing stability to an AR of 2^10 in 3D, and 2^64 in 2D. — hcarson / detail
minor typo fix — shunz / detail
fix formatting — shunz / detail
add mitLG BC for IBL3 — shunz / detail
minor refactoring — shunz / detail
switch to the same input parameters as DBL3 — shunz / detail
add LF flux to IBL3 — shunz / detail
Changes to ErrorModel to allow for the new exact nodal metric calculation — hcarson / detail
Changes to ErrorModel to allow for the new exact nodal metric calculation — hcarson / detail
pre merge add.... wth? — hcarson / detail
add Dirichlet mitLG inflow BC to a Blasius flow test case — shunz / detail
Jenkins fix — hcarson / detail
reverting to the develop branch of ErrorModel — hcarson / detail
fixes to case — hcarson / detail
fixes to case — hcarson / detail
intermediate commit: added 4-equation neural net closure model. working on 4-equation IBL3D pde class — shunz / detail
remove extraneous tamplate keyword — shunz / detail
Various changes for arthur: Commented the adjoint_wo_p things from SolverInterface_VMSD_BR2, reducing the memory reqs. Made the Deltawing adapts more uniform and fit with the plan. Added the Solve case for the VMSD delta wing. — hcarson / detail
added soruce terms for the lateral curvature equation of IBL3 — shunz / detail
removed re-definition — shunz / detail
refactored and added PDE and BC for four-equation 3D IBL class. added a starting point for torpedo case — shunz / detail
separated classes of 3D IBL and IBLFourEqn — shunz / detail
generalized templates in IBL3-related integrands — shunz / detail
added instantiations for four-equation 3D IBL — shunz / detail
fixed instantiation typo — shunz / detail
turned on verbose linesearch printout — shunz / detail
added a visous-only Blasius case for 4-equation 3D IBL. added a missing include — shunz / detail
refactored reference coordinate gradient for speedup. add/edit comments for clarity — shunz / detail
typo fix: gradqe*E_qesq. minor edits — shunz / detail
turned off printout in unit testing — shunz / detail
cosmetic changes — shunz / detail
refactored neural net closure models: H22, Hd1, Hc2 — shunz / detail
added output for four-equation 3D IBL — shunz / detail
fixed auxi equation (wall transpiration): previous mass flux missed crossflow component — shunz / detail
previous fix to wall transpiration (auxi equation) didn't fix. it is now fixed. added unit test — shunz / detail
minor tweak — shunz / detail
minor cleanup — shunz / detail
add velocity gradient output to IBL — shunz / detail
add instantiation — shunz / detail
added IBL3 closure relations in the form of analytic formulae — shunz / detail
refactored neural net closure implementation — shunz / detail
added a set of IBL3 closure models based on analytic formulae — shunz / detail
restored four-equation neural net closure to its original working state — shunz / detail
switch to using 4-equation IBL3 closure based on analytic formulae. results are similar or slightly better than neural net closure — shunz / detail
fixed a typo (which fortunately wasn't used yet). added exception throws — shunz / detail
fixed include filename — shunz / detail
removed redundant exceptions — shunz / detail
refactored four-eqn IBL3 curve-fit closure — shunz / detail
conformed to vera check: should not use "using namespace" in header files — shunz / detail
fixed unit tests for after API refactoring — shunz / detail
fixed unit tests for the previous API refactoring — shunz / detail
fixed ping tests: finite difference step size — shunz / detail
added ping test for four-eqn IBL3 — shunz / detail
added Blasius flow test case for four-eqn IBL3D. some cleanup — shunz / detail
added include — shunz / detail
added includes — shunz / detail
checked four-eqn IBL3D on Blasius case and stagnation radial flow — shunz / detail
added a stagnation flow toy case. mucked with IBL3 for torpedo case — shunz / detail
fixed toy case to keep up with API refactoring — shunz / detail
added missing include related to MPI — shunz / detail
suppresed file dump in system test — shunz / detail
added assertions — shunz / detail
add some derivates to the IBL3 output — shunz / detail
relaxed pyrite tolerance — shunz / detail
relaxed pyrite tolerance for intel compiler. speed up ping test to avoid time-out — shunz / detail
renamed output — shunz / detail
added and refactored IBL3 output — shunz / detail
make verbose_ if-tests consistent throughout — allmaras / detail
fixed screen dump for checkSolve_ when residuals above tolerance — allmaras / detail
added option to dump solution at each Newton iteration — allmaras / detail
added pressure gradient for space-time — allmaras / detail
added instantiations, etc, needed for log(p) variables with look-up porosity/permeability tables — allmaras / detail
added grid-Laplacian artificial viscosity for pressure; currently hard-coded diffusion coefficient — allmaras / detail
trying to fix gnu9 compiler warning — shunz / detail
added "#include <utilities>" for std::move; added unit test for VectorBlock_3 — allmaras / detail
fixed vera line-length squawk — allmaras / detail
fixed vera line-length squawk — allmaras / detail
fixed vera line-length squawk — allmaras / detail
add a new curve fit model based on low-dissipative DBL3 data — shunz / detail
allow for uncoupled/viscou-only IBL3 solution by tweaking the panel method — shunz / detail
fixed VectorBlock_3 unit test; made ::m() and ::n() static, so 2, 3, and 4 are all consistent — allmaras / detail
forgot to save changes in the last commit... — shunz / detail
relaxed Jenkins timeout threshold for some large ping tests — shunz / detail
minor tweak — shunz / detail
speed up ping test by turning off some redundant sub-block checks — shunz / detail
fix cppcheck error — shunz / detail
speed up ping test by turning off tests on some sub-blocks of the jacobian — shunz / detail
added directory creation for output files — allmaras / detail
Don't use python2 with jenkins — galbramc / detail
removed old version of adjoint-compatible potential solver for Hershey wing — allmaras / detail
temporarily disabled tests involving artificial viscosity fluxes if USE_PRESSURE_AV defined — allmaras / detail
make VectorBlock test-suite names unique (so make unit_build works) — allmaras / detail
added unit tests for circulation integrations — allmaras / detail
added circulation integrations for lift & roll as functional outputs — allmaras / detail
Add Q3 and Q4 elements to Gmsh IO — galbramc / detail
clean-up of circulation-base functional code/test; added drag but #ifdef'ed out, as it's not complete — allmaras / detail
Fix finding macOS Accelerate BLAS — galbramc / detail
cppcheck fixes for nightly — allmaras / detail
moving back to develop — hcarson / detail
add empty definition to fix undefined reference in weekly test — shunz / detail
add empty definition to fix undefined reference in weekly test — shunz / detail
vera fix — hcarson / detail
removing unneeded test — hcarson / detail
fixing unused var — hcarson / detail
Update for latest version of refine — galbramc / detail
missing space — hcarson / detail
Added vpr11@mit.edu to DeveloperEmailAddresses — vpr11 / detail

#264 (Jun 13, 2020, 1:52:07 AM)

relocate QauxvInterpret forward declaration in prep for 3D stuff — shunz / detail
Added basic stuff for 3D IBL — shunz / detail
Minor cleanup — shunz / detail
Initial pass on PDEIBL3D — shunz / detail
Filled in 3D IBL closure with fully 3D components set to zero — shunz / detail
Added BCNone for IBL3D — shunz / detail
added a working version of sandbox case for IBL3D — shunz / detail
Added a sheet grid of triangles in 3D for IBL3D — shunz / detail
Added instantiation — shunz / detail
Intermediate commit — shunz / detail
Working on integrands for first 3D IBL case — shunz / detail
More fixes to integrand classes for IBL3D — shunz / detail
Fixed instantiations for IBL3D — shunz / detail
Add explicit instantiations and fix typos in closure class — shunz / detail
Initial version of local Cartesian basis construction for 3D IBL — shunz / detail
Minor cleanup — shunz / detail
Fix constuction of q1 and q2 vectors in case of stagnation flows — shunz / detail
Add velocity gradient calculation in cell integrand of 3D IBL — shunz / detail
Refactor and add a 2D stagnation flow test case — shunz / detail
Add a 3D quad grid — shunz / detail
Update cmake list for unit grid test — shunz / detail
Fix typo in 3D quad sheet grid — shunz / detail
fix bug in qauxv gradient calculation in 3D IBL cell integrand — shunz / detail
Fix the scale and dimension of dissipation integral in 3D integral — shunz / detail
fix a typo in thickness identity — shunz / detail
Add more options to 3D IBL stagnation flow case, including quad grid, solution initialization, — shunz / detail
one more bug fix in cell integrand for 3D IBL — shunz / detail
Bugfix in calculation of trace unit normal vector for area cells in 3D — shunz / detail
Add Nishida's crossflow closure. Add pyrite check of stagnation flow case for 3D IBL. Minor addition for debugging in PDEIBL3D — shunz / detail
fix dependents of refactoring of GetSolnDofCell_IBL — shunz / detail
Add a 3D flat plate source panel method but haven't tested yet — shunz / detail
intermediate commit: minor clenaup and add guards. — shunz / detail
intermediate commit: working on 3D coupled IBL for torpedo cass — shunz / detail
add 3x3 equation system — shunz / detail
typo fix. add partial instantiations for system 3x3 vector and matrix types — shunz / detail
add linesearch data type for 3x3 equation system — shunz / detail
add missing include — shunz / detail
intermediate commit: fix many compiling errors in the way of running torpedo case for IBL3D. switching computer to continue the work... — shunz / detail
refactor projection to Qauxi — shunz / detail
add interior trace integrand for projection onto Qauxi — shunz / detail
minor fix — shunz / detail
add instantiations for IBL3D torpedo case — shunz / detail
add instantiations for coupled IBL3D — shunz / detail
remove unnecessary assert — shunz / detail
fix for coupled IBL case to compile and run — shunz / detail
fix uninitialized dummy DOFs — shunz / detail
fix setDOFFrom in Qauxv 3D (missing q_y previously) — shunz / detail
Coupled 3D IBL case converged on some simple variants of the torpedo case: linear and mildly nonlinear radial velocity distribution with attached laminar BLs — shunz / detail
Tried triangle grid as well: fine on radially linear velocity distribution but couldn't converge on a more nonlinear case — shunz / detail
cleaned up unused stuff — shunz / detail
refactor SetIBLoutputCellGroup to accommodate both 3D and 2D IBL — shunz / detail
remove outdated include — shunz / detail
more refactoring of SetIBLoutputCellGroup for 3D IBL. working progress. switching computer — shunz / detail
intermediate commit. switching computer. — shunz / detail
enable tecplot output for 3D IBL — shunz / detail
add full-state BC for IBL3D with corresponding boundary trace integrand. verified on an uncoupled Blasius case — shunz / detail
add a coupled IBL3D Blasius case — shunz / detail
implement PTC for coupled IBL 3x3 system — shunz / detail
add commented-out stuff for turning off laminar amplification and lag equations in IBL3D — shunz / detail
fix typo in commented-out stuff — shunz / detail
enable rotated mesh for IBL3D torpedo case — shunz / detail
set up a torpedo with grid aligned with xy axes. turned off laminar amplification and lag equations [need to be brought back after testing purely laminar BLs] — shunz / detail
minor change to test case — shunz / detail
minor refactoring on Blasius inflow BC params — shunz / detail
rename test cases — shunz / detail
speed up panel-related jacobian calculation using cached influence matrix in place of surrealized qauxifld — shunz / detail
add jacobian timing for refactoring purpose — shunz / detail
add similar (to DBL3) Falkner-Skan inflow bc for IBL3D with non-constant inflow state. set up a tornado case with rotated xy grid to compare with DBL3 — shunz / detail
minor refactoring of test cases — shunz / detail
remove trivial zero z velocity component to speed up panel method — shunz / detail
minor refactoring — shunz / detail
typo fix — shunz / detail
precompute inviscid velocity for panel, which resulted in O(10) speedup in related residual calculation. fix DOF indexing in residual/jacobian precomputation — shunz / detail
define macro to comment off some lines for timing/refactoring — shunz / detail
minor comments — shunz / detail
add ping test for coupled IBL in 3x3 block system — shunz / detail
fix typo in Cf2 closure, although it didn't change the torpedo case results much — shunz / detail
add a wall term to dissipation relation of Nishida's closure, although it didn't affect things much — shunz / detail
add a test case of fx67-k-170 airfoil — shunz / detail
minor edit to output filenames at convergence failures — shunz / detail
resolve merge conflict — shunz / detail
changed default flux of IBL to LF flux — shunz / detail
add a test case for drag polar — shunz / detail
ran drag polar cases — shunz / detail
refactored reference speed in transition model — shunz / detail
typo fix — shunz / detail
rename working directory — shunz / detail
refator characteristic speed for PTC — shunz / detail
refator characteristic speed for PTC — shunz / detail
update pyrite files — shunz / detail
refactor 3D IBL closure API to allow for alternative closure models — shunz / detail
save 3D closure relations in a separate header — shunz / detail
add neural net closure for 3D IBL — shunz / detail
run drag polar on finer grids — shunz / detail
switch to run on acdl desktop — shunz / detail
fix memory leak warning caused by accessing index -1 — shunz / detail
minor update — shunz / detail
mucking with PETSc for IBL3 — shunz / detail
instantiate MKL_PARDISO solver for matrix block 3x3 — shunz / detail
tried MKL_PARDISO solver for IBL3 — shunz / detail
minor typo fix — shunz / detail
fix formatting — shunz / detail
add mitLG BC for IBL3 — shunz / detail
minor refactoring — shunz / detail
switch to the same input parameters as DBL3 — shunz / detail
add LF flux to IBL3 — shunz / detail
add Dirichlet mitLG inflow BC to a Blasius flow test case — shunz / detail
intermediate commit: added 4-equation neural net closure model. working on 4-equation IBL3D pde class — shunz / detail
remove extraneous tamplate keyword — shunz / detail
added soruce terms for the lateral curvature equation of IBL3 — shunz / detail
removed re-definition — shunz / detail
refactored and added PDE and BC for four-equation 3D IBL class. added a starting point for torpedo case — shunz / detail
separated classes of 3D IBL and IBLFourEqn — shunz / detail
generalized templates in IBL3-related integrands — shunz / detail
added instantiations for four-equation 3D IBL — shunz / detail
fixed instantiation typo — shunz / detail
turned on verbose linesearch printout — shunz / detail
added a visous-only Blasius case for 4-equation 3D IBL. added a missing include — shunz / detail
refactored reference coordinate gradient for speedup. add/edit comments for clarity — shunz / detail
typo fix: gradqe*E_qesq. minor edits — shunz / detail
turned off printout in unit testing — shunz / detail
cosmetic changes — shunz / detail
refactored neural net closure models: H22, Hd1, Hc2 — shunz / detail
added output for four-equation 3D IBL — shunz / detail
fixed auxi equation (wall transpiration): previous mass flux missed crossflow component — shunz / detail
previous fix to wall transpiration (auxi equation) didn't fix. it is now fixed. added unit test — shunz / detail
minor tweak — shunz / detail
minor cleanup — shunz / detail
add velocity gradient output to IBL — shunz / detail
add instantiation — shunz / detail
added IBL3 closure relations in the form of analytic formulae — shunz / detail
refactored neural net closure implementation — shunz / detail
added a set of IBL3 closure models based on analytic formulae — shunz / detail
restored four-equation neural net closure to its original working state — shunz / detail
switch to using 4-equation IBL3 closure based on analytic formulae. results are similar or slightly better than neural net closure — shunz / detail
fixed a typo (which fortunately wasn't used yet). added exception throws — shunz / detail
fixed include filename — shunz / detail
removed redundant exceptions — shunz / detail
refactored four-eqn IBL3 curve-fit closure — shunz / detail
conformed to vera check: should not use "using namespace" in header files — shunz / detail
fixed unit tests for after API refactoring — shunz / detail
fixed unit tests for the previous API refactoring — shunz / detail
fixed ping tests: finite difference step size — shunz / detail
added ping test for four-eqn IBL3 — shunz / detail
added Blasius flow test case for four-eqn IBL3D. some cleanup — shunz / detail
added include — shunz / detail
added includes — shunz / detail
checked four-eqn IBL3D on Blasius case and stagnation radial flow — shunz / detail
added a stagnation flow toy case. mucked with IBL3 for torpedo case — shunz / detail
fixed toy case to keep up with API refactoring — shunz / detail
added missing include related to MPI — shunz / detail
suppresed file dump in system test — shunz / detail
added assertions — shunz / detail
add some derivates to the IBL3 output — shunz / detail
relaxed pyrite tolerance — shunz / detail
relaxed pyrite tolerance for intel compiler. speed up ping test to avoid time-out — shunz / detail
renamed output — shunz / detail
added and refactored IBL3 output — shunz / detail
trying to fix gnu9 compiler warning — shunz / detail
add a new curve fit model based on low-dissipative DBL3 data — shunz / detail
allow for uncoupled/viscou-only IBL3 solution by tweaking the panel method — shunz / detail
forgot to save changes in the last commit... — shunz / detail
relaxed Jenkins timeout threshold for some large ping tests — shunz / detail
minor tweak — shunz / detail
speed up ping test by turning off some redundant sub-block checks — shunz / detail
fix cppcheck error — shunz / detail
speed up ping test by turning off tests on some sub-blocks of the jacobian — shunz / detail
Don't use python2 with jenkins — galbramc / detail

#263 (May 30, 2020, 2:08:52 AM)

instantiation of vectors for 1D Euler — ursachi / detail
added williams sparse quadrature, and tests, and everything seems to be working! — cfrontin / detail
added some stuff — cfrontin / detail
quadrature update. — cfrontin / detail
1D+T AD adapt case added. — cfrontin / detail
need to fix boundaryoutput for vmsd case im workin on. — cfrontin / detail
updated quadrature and quad testing and also unit tests. — cfrontin / detail
corrected merge error — cfrontin / detail
jenkins fixes — cfrontin / detail
jenkins fixes — cfrontin / detail
Various small fixes for Windoze — galbramc / detail
Fix last commit — galbramc / detail
slight change to quad test, nightly fix. — cfrontin / detail
update, turn off quadrature sandbox for jenkins — cfrontin / detail
update, turn off quadrature sandbox for jenkins 2nd try — cfrontin / detail
Added WriteMesh_ugrid. Add 2D ugrid read/write — galbramc / detail
Fix compile error — galbramc / detail
Properly cleanup ugrid testing files — galbramc / detail
Fix warning — galbramc / detail
Nightly fixes — galbramc / detail
Upgrade AFLR version — galbramc / detail
added 2D moment, pressure drag, and viscous drag outputs — ursachi / detail
added ability to write qpfld restart file — ursachi / detail
created Q1 version of multi-element test case — ursachi / detail
fixes for refine test case — ursachi / detail
slight change to test case — ursachi / detail
2D VMSDBR2 + RANSSA + AV instantiations — ursachi / detail
missing instantiations and functions for RANSSA + AV — ursachi / detail
Q1 AV test case — ursachi / detail
initial mesh characteristics stuff — ursachi / detail
element counter/finder, for 2D — ursachi / detail
cleaned up file — ursachi / detail
Revert "initial mesh characteristics stuff" — ursachi / detail
added some derived surface quantities — ursachi / detail
fixed formatting issues — ursachi / detail
missed some trailing spaces — ursachi / detail
removed duplicate instantiation — ursachi / detail
fixed a warning — ursachi / detail
Nightly fix — galbramc / detail
Fix to work with Boost 1.73. Replace 'unsinted long' with 'uintptr_t' in triangle — galbramc / detail
fixed another warning — ursachi / detail
Fix formatting — galbramc / detail
Fix linearization bug in VMSDBR2 — galbramc / detail

#262 (May 23, 2020, 1:52:07 AM)

instantiation of vectors for 1D Euler — ursachi / detail
added williams sparse quadrature, and tests, and everything seems to be working! — cfrontin / detail
added some stuff — cfrontin / detail
quadrature update. — cfrontin / detail
1D+T AD adapt case added. — cfrontin / detail
need to fix boundaryoutput for vmsd case im workin on. — cfrontin / detail
updated quadrature and quad testing and also unit tests. — cfrontin / detail
corrected merge error — cfrontin / detail
jenkins fixes — cfrontin / detail
jenkins fixes — cfrontin / detail
Various small fixes for Windoze — galbramc / detail
Fix last commit — galbramc / detail
slight change to quad test, nightly fix. — cfrontin / detail
update, turn off quadrature sandbox for jenkins — cfrontin / detail
update, turn off quadrature sandbox for jenkins 2nd try — cfrontin / detail
Added WriteMesh_ugrid. Add 2D ugrid read/write — galbramc / detail
Fix compile error — galbramc / detail
Properly cleanup ugrid testing files — galbramc / detail
Fix warning — galbramc / detail
Nightly fixes — galbramc / detail
Upgrade AFLR version — galbramc / detail
added 2D moment, pressure drag, and viscous drag outputs — ursachi / detail
added ability to write qpfld restart file — ursachi / detail
created Q1 version of multi-element test case — ursachi / detail
fixes for refine test case — ursachi / detail
slight change to test case — ursachi / detail
2D VMSDBR2 + RANSSA + AV instantiations — ursachi / detail
missing instantiations and functions for RANSSA + AV — ursachi / detail
Q1 AV test case — ursachi / detail
initial mesh characteristics stuff — ursachi / detail
element counter/finder, for 2D — ursachi / detail
cleaned up file — ursachi / detail
Revert "initial mesh characteristics stuff" — ursachi / detail
added some derived surface quantities — ursachi / detail
fixed formatting issues — ursachi / detail
missed some trailing spaces — ursachi / detail
removed duplicate instantiation — ursachi / detail
fixed a warning — ursachi / detail
Nightly fix — galbramc / detail
Fix to work with Boost 1.73. Replace 'unsinted long' with 'uintptr_t' in triangle — galbramc / detail
fixed another warning — ursachi / detail
Fix formatting — galbramc / detail

#261 (Apr 17, 2020, 10:14:29 AM)

Added variable interpreter for primary unknowns = {delta*, theta, G} — shunz / detail
Refactored IBL profile type identifier — shunz / detail
Added unit tests to VarInterpret — shunz / detail
Fixed unit test — shunz / detail
Added a new class for calculating thicknesses and coeffcients, along with unit tests. — shunz / detail
Typo fixes — shunz / detail
Refactored PDEIBLUniField to use genealized thicknesses/coeffcients calculation routines. Verified uncoupled IBL run with airfoil only — shunz / detail
Refactoring to get coupled IBLUniField to work without transition. Caveat: pyrite check is fine with delta & A variables, but mismatches G (maybe numerical precision issue? to be eamined) — shunz / detail
Cleaned up obsolete stuff — shunz / detail
Cleanup — shunz / detail
Renaming/cleanup — shunz / detail
Preliminary implementation of correlation closure — shunz / detail
Minor refactoring — shunz / detail
First run of correlation-closure IBL on an uncoupled airfoil-only case, compared reasonably well with profile-closure results — shunz / detail
minor edit — shunz / detail
Added turbulent closure from MSES paper. Ran coupled IBL on airfoil+wake configuration, comparing reasonably well with IBL based on profile closures — shunz / detail
Distinguished H from Hk (kinematic). — shunz / detail
Reduced code repetition — shunz / detail
Added some XFOIL closures — shunz / detail
Added more XFOIL closures — shunz / detail
Typo fixes — shunz / detail
Refactored Uslip calculation — shunz / detail
Fixed a typo in xfoil laminar BL closure — shunz / detail
Added pyrite check for XFOIL laminar BL closure — shunz / detail
Recovered the correct double dissipation for wake. Added pyrite files — shunz / detail
Added output dumping functions for correlation-closure IBL — shunz / detail
Refactored output function and added a utility function — shunz / detail
Added XFOIL amplification growth rate closure, which is almost identical to IBL — shunz / detail
Modified lag equation and CDiss closure a bit. — shunz / detail
With modified lag equation, laminarBL+turbulentWake results matches XFOIL very closely — shunz / detail
Added captured transition test case with pyrite file for correlation-based IBL — shunz / detail
Fixed an innocuous bug — shunz / detail
Re-enabled LF flux — shunz / detail
Added machinery for loading up IBL solution from input file — shunz / detail
Make LF flux a default for IBL — shunz / detail
Refactored blended intermittency calculation for correlation-based closure — shunz / detail
Do no apply blending for wake — shunz / detail
Switched to generalized thickness/coeffcient calculation for duplicate-field IBL as well. Verified uncoupled airfoil case with full upwind — shunz / detail
Bug fix — shunz / detail
Verified coupled case with laminarBL+turbulentWake — shunz / detail
Minor refactoring — shunz / detail
minor cleanup — shunz / detail
Added instantiation and fixed transition test cases — shunz / detail
Added a missing method — shunz / detail
Added a pyrite check for NACA0012 case (with flow separation) — shunz / detail
Added a different set of initial solution. Allowed for laminar BL to turn turbulent during transient state — shunz / detail
Added new IBL variable type — shunz / detail
Added unit tests and fixed bugs — shunz / detail
Generalized dummy equations in duplicate-field IBL pde class — shunz / detail
Follow-up fixes for test cases affected by earlier commits — shunz / detail
Refactored solution initialization — shunz / detail
Enabled correlation-based two-field IBL formulation. Added test case of coupled IBL with lamiBL+turbWake and corresponding pyrite file. — shunz / detail
Refactored updateFraction in PDEIBL and also fixed the sign in solution update — shunz / detail
Generalized cut-cell machinery to handle two different sets of IBL primary unknowns — shunz / detail
Added pyrite check — shunz / detail
Added comments — shunz / detail
Minor refactoring. Added missing initial solution file — shunz / detail
Intermediate commit — shunz / detail
Cleaned up test cases — shunz / detail
Refactored updateFraction — shunz / detail
Added a pyrite check — shunz / detail
Relaxed tolerance — shunz / detail
Refactoring updateFraction. Added an expedient guard against too small Hk — shunz / detail
Added underrelaxation — shunz / detail
Added underrelaxation-related stuff — shunz / detail
Cosmetic edtis — shunz / detail
Verified pyrite check for fitted-transition IBL on NACA0012 Re=1e5 massively separated laminar BL — shunz / detail
Added Cf replacement for turbulent BL with too small Retheta — shunz / detail
Added a pyrite file — shunz / detail
Added a pyrite file — shunz / detail
BC refactoring and unit test fix — shunz / detail
Refactored BC and added unit tests — shunz / detail
Improved coverage by removing redundant safety guards — shunz / detail
Just renaming — shunz / detail
Refactoring and unit testing — shunz / detail
Fixed a bug in Cf correlation. Added unit test — shunz / detail
Type fix — shunz / detail
Unit tested correlations from XFOIL. — shunz / detail
Refactored amplification growth correlation calculation for speedup --> changed the floating-point arithmetic a bit Added unit tests. — shunz / detail
added comments — shunz / detail
Cleanup — shunz / detail
Cleanup — shunz / detail
Dump additional output files for examination — shunz / detail
Unit test fixes — shunz / detail
More unit test fixes — shunz / detail
Unit test fix — shunz / detail
Refactored blended intermittency calculation and added unit tests — shunz / detail
Refactored updateFraction and added unit tests — shunz / detail
minor fixes — shunz / detail
matching old system pyrite test: coupled IBLUniField profile-closure lamiBL+turbWake — shunz / detail
Changed initial solution guess — shunz / detail
Bug fix. Equality operator is sensitive to type: std::string vs its reference. — shunz / detail
Minor refactoring — shunz / detail
Added comments — shunz / detail
Refactored unit tests — shunz / detail
Refactored source terms and added unit tests for PDEIBL2D — shunz / detail
Refactored ctau_{turb,init}. Unit tested turbulent sub-cell source term for amplification eqn in cut-cell transition formulation — shunz / detail
Fix for vera formatting check. Also a minor refactoring — shunz / detail
Minor refactoring — shunz / detail
Refactored ctau_{turb,init} fitting calculation — shunz / detail
Forgot to save this in the last commit... — shunz / detail
Unit-tested upwind advective flux in two-fIeld IBL pde class — shunz / detail
Minor commenting — shunz / detail
Minor refactoring — shunz / detail
minor refactoring — shunz / detail
Refactored dummy matching equations for fitted transition — shunz / detail
Forgot to commit this in the last pass — shunz / detail
Modified artificial amplification source term in fully turbulent elements. Pluse other minor refactoring — shunz / detail
Make sure scales are non-negative — shunz / detail
Enabled G=ln(ctau^0.5) as a primary unknown in place of ctau. It helps with nonlinear solution. — shunz / detail
Fixed unit tests — shunz / detail
Dumping matching variables for transition — shunz / detail
Refactored underrelaxation to guard against zero G. Added forced-transition subiteration output dump — shunz / detail
Turned off limiting on G variable. Made H validity check tighter — shunz / detail
Playing with a different form of lag equation in fitted transition approach. Not much luck though. So, as of now, using G as the primary unknown is already helpful — shunz / detail
Playing with point source for setting ctau_{Turb,init} — shunz / detail
Refactored forced transition point source for ctau jump — shunz / detail
playing with point source for ctau jump in free transition — shunz / detail
Tried implementing ctau jump condition via flux modification — shunz / detail
Got a captured transition result with sharp ctau jump at free transition front — shunz / detail
Added explicit instantiation — shunz / detail
Genearalized HubTrace boundary trace integrand by ridding of any PDE/BC dependence — shunz / detail
Generalized IBL solution DOF setter — shunz / detail
Implemented a different formulation for captured transition by splitting the amplification and lag equations — shunz / detail
Added instantiations — shunz / detail
Fixed amplification and lag source terms in new IBL PDE class — shunz / detail
Verified NACA0012 Re1e5 results against XFOIL (separated fully laminar BL) — shunz / detail
Add a lower limit to the modeled turbulent initial ctau — shunz / detail
Minor refactoring — shunz / detail
Fixed a bug in solution initialization — shunz / detail
Refactored masterState calculation from cumulation to assignment — shunz / detail
minor tidying — shunz / detail
Refactored smooth intermittency blending to allow for natural and forced transition as the same time — shunz / detail
Allowed for initializing p0 IBL solution from input file — shunz / detail
Added H upper limit in validity check — shunz / detail
SplitAmpLag working on NACA0012 Re 2e5 separation bubble — shunz / detail
Cosmetic edit — shunz / detail
Decoupled nt variables of BL from nt of the wake — shunz / detail
Converged p=0 solution on ne64 and n128 grids for Eppler 387 case — shunz / detail
minor cleanup — shunz / detail
renaming — shunz / detail
Refactored state validity check — shunz / detail
minor refactoring — shunz / detail
Added IO files for testing Eppler 387 airfoil — shunz / detail
Typo fix — shunz / detail
Tried PTC for IBLSplitAmpLag captured transition case — shunz / detail
Further simplified amplification equation at hubtrace — shunz / detail
Added grid and initial solution files — shunz / detail
minor cleanup — shunz / detail
added hessian to Joukowski solution — allmaras / detail
bug fix in Joukowski test — allmaras / detail
Minor edit — shunz / detail
Refactored a case — shunz / detail
Fixed calls to jacobianTranspose of daisy-chained algebraic equation set — shunz / detail
Cleanup — shunz / detail
minor refactoring — shunz / detail
minor edit to running case — shunz / detail
Refactored printed normed reisudals when line-search fails. — shunz / detail
Refactored running case — shunz / detail
Minor cleanup — shunz / detail
Minor fix — shunz / detail
Refactored uncoupled IBL case and added pyrite file — shunz / detail
Fixed HDG continuous implementation. Reverted to Var(delta, A, G) to not hacking scaling delta and A. Cleaned up some system tests — shunz / detail
Refactored two test cases — shunz / detail
Added Hk lower limit check when checking state validity for IBLUniField with correlation closures — shunz / detail
Added pyrite check file. Refactored test cases and enabled PTC on one of them. — shunz / detail
Fix pyrite check — shunz / detail
Fixed undefined variables — shunz / detail
Updated a pyrite file to be consistent with the latest settings in IBLUniField — shunz / detail
Deleted a redundant case — shunz / detail
added some commented out hack for fully turbulent BL simulation with IBLUniField — shunz / detail
Updated pyrite file — shunz / detail
Added exceptions as safe guards — shunz / detail
cosmetic refactoring — shunz / detail
cosmetic refactoring — shunz / detail
Added a pyrite file and changed test file name — shunz / detail
turned on set IBL dofs for p=0 for DsThG — shunz / detail
Dumped singular jacobian when UMFPACK finds it — shunz / detail
Refactored system test cases — shunz / detail
Using a less conservative initial CFL for PTC in a test case — shunz / detail
Refactored system test case — shunz / detail
Added some auxiliary functions for system test cases — shunz / detail
Added some debugging options — shunz / detail
Minor refactoring — shunz / detail
Simplified upwind flux in IBL to improve code reuse — shunz / detail
Commented out hacks. Added minor guards. Dumped matrix when UMFPACK linear solve fails. — shunz / detail
Laminar-turbulent blending works for Eppler 387 now. Turned on G limiting in updateFraction — shunz / detail
Cleaned up and refactored projection to Qauxi — shunz / detail
Removed redundant TopoDim templates following Hugh's recent updates — shunz / detail
playing with numerical flux and nt growth rate in laminar-turbulent blending formulation — shunz / detail
Playing with various grid-dependent laminar-turbulent blending strategies — shunz / detail
minor cleanup — shunz / detail
Use value instead of reference since equivalence is checked instead of identity — shunz / detail
Added output — shunz / detail
Tweaked LF flux dissipation coefficient a bit. Modified lag source term to prevent ctau to drop with ctau_Tinit after reaching its peak. Hacking grid dependent blending. Left system test case unchecked for the moment — shunz / detail
Added Hs derivatives with unit tests. Fixed typos in closure unit tests — shunz / detail
Abstracted Re_theta calculation — shunz / detail
Added Roe flux based on arithmetic average state — shunz / detail
Added class for setting qaux field from file — shunz / detail
Typo fix — shunz / detail
Minor refactoring — shunz / detail
Output blended IBL quantities — shunz / detail
Added an uncoupled IBL case — shunz / detail
Added qinif initialization to a shared file for setting up IBL case — shunz / detail
Using qinf initialization from a shared file — shunz / detail
Refactored Roe flux for IBL — shunz / detail
Added entropy fix — shunz / detail
Just hacking around. The hacky stuff are turned off — shunz / detail
Reformulated DG-IBL interface flux and finally fixed solution oscillation in transition cases. Saved other miscellaneous updates — shunz / detail
cosmetic changes (with hacks being commented out) — shunz / detail
Normalize KE equation by q^2 — shunz / detail
editted comments — shunz / detail
Use pde fluxAdvective function to calculate outflow flux at Hubtrace boundary — shunz / detail
cleaned up some hacks — shunz / detail
minor cleanup — shunz / detail
Accidentally messed up blended source term. Restore it now. — shunz / detail
Stashed some intermediate edits — shunz / detail
Fixed the numerical flux of IBL momentum equations to eliminate solution jumps and/or oscillations. Also cleaned up temporary hacks. — shunz / detail
Make intermittency length scale a parameter in the transition model. Cleaned up old hacks in in PDEIBLSplitAmpLag2D — shunz / detail
More cleanup — shunz / detail
minor edits — shunz / detail
Disable search for boost-cmake; otherwise, runs into conflicts with FindBoost. Need to resolve this if using boost-cmake in the future — shunz / detail
Minor cleanup following last merge commit — shunz / detail
Minor fixes to keep up with changes in the main branch — shunz / detail
Add pyrite check on E387 airfoil transition separation bubble case — shunz / detail
Update Solve2D_Coupled4x4_IBLSplitAmpLag_CorrelationClosure_CapturedTransition_PTC_btest.cpp — shunz / detail
Cleaned up the numerical flux options in Qauxi projection. All three numerical fluxes produce similar well-behaved results. Add a sandbox case — shunz / detail
working on advective field case... — cfrontin / detail
asdfasdf — cfrontin / detail
working on the advective field and it's broken LOL — cfrontin / detail
fix mpi dg — cfrontin / detail
trying to figure out idiosyncracy — cfrontin / detail
cont'd — cfrontin / detail
cont'd pt. ii — cfrontin / detail
name fix — cfrontin / detail
oopsie — cfrontin / detail
working on random field — cfrontin / detail
updated random fields, should be working but untested. — cfrontin / detail
unit tests for adjoint — arthuang / detail
fixes to compute AR etc. — hcarson / detail
Fix for EPIC 2D without geometry — galbramc / detail
jenkins fix, holdover code. — cfrontin / detail
adding block pivoting to ilu — arthuang / detail
a VMSDBR2 version of the DeltaWing Chain toy — hcarson / detail
Enable static condensation with MKL — galbramc / detail
Missed a static condensation step — galbramc / detail
Another MKL static condensation fix — galbramc / detail
Relaxed tolerance — galbramc / detail
a VMSDBR2 Double BL, also lining up the 3 so that they are the same. HOWEVER, Seems to be something very wrong with plain VMSD, the adapt looks crap and the error is enormous.... — hcarson / detail
Updates for latest refine — galbramc / detail
urop fix? — cfrontin / detail
jenkins fix, odds and ends. — cfrontin / detail
added 2D+T VMSD AD case. — cfrontin / detail
minor edit — shunz / detail
refactored the new PDE IBL class and added unit tests — shunz / detail
fixed LF flux — shunz / detail
Relocated blended intermittency to PDE class. Added unit tests. — shunz / detail
Added unit tests to VarInterpret — shunz / detail
Fixed intermittency usage in auxi equation — shunz / detail
refactored intermittency calculation calling signature across different variants of IBL formulations — shunz / detail
Fixed type — shunz / detail
Refactored unit tests to keep up with updates in the thickness class — shunz / detail
Cleaned up manifold interface integrand implementation. Minor type corrections for unit tests involving Surreal types. — shunz / detail
Fixed ping tests by adjusting the reference solution and step size — shunz / detail
Refactored PDEIBLSplitAmgLag2D default flux and ctau_min. Added pyrite check files — shunz / detail
updated pyrite files — shunz / detail
Refactored IBL solution file reader. Cleaned up system tests for various IBL formulations — shunz / detail
Removed IO file clutter — shunz / detail
Added variable data constructors. Fixed types. File cleanup — shunz / detail
Fixed IBL solution reader usage — shunz / detail
Recovered a system test on IBLUniField — shunz / detail
Cleaned up system tests — shunz / detail
Fixed IBL solution reader usage — shunz / detail
Fixed duplicate symbols by inline. Added a missing pyrite check file — shunz / detail
Relaxed pyrite tolerance. Fixed unit tests for IBL soluton file reader — shunz / detail
Suppressed file output for Jenkins — shunz / detail
Suppressed one more file output for Jenkins. — shunz / detail
Fixed unused variable — shunz / detail
Relaxed pyrite tolerances for gnu — shunz / detail
Subtle typo in pyrite filename — shunz / detail
Relaxed tolerances for intel compilers — shunz / detail
Relaxed pyrite tolerance. Added explicit instantiation to fix linker error — shunz / detail
Relaxed tolerance. Fixed timeout on Jenkins — shunz / detail
Relaxed pyrite tolerances — shunz / detail
relaxed tolerance on d/dxdy test — allmaras / detail
Replace Joukowski q1 grid — galbramc / detail
coverage improvement — cfrontin / detail
hotfix — cfrontin / detail
quick fix — cfrontin / detail
Attempt to use parallel MKL (does not work yet). Other small cleanups. — galbramc / detail
Added cartesian table lookup for PorusMedia SPE calculations — galbramc / detail
Use atlas blas on rhel7 — galbramc / detail
2d+t hex solve patch. — cfrontin / detail
belated nomenclature fix — cfrontin / detail
Consistent delete — galbramc / detail
VMSDBR2 3D+T additions. — cfrontin / detail
added squarechannel vmsd br2 changes — cfrontin / detail
General PETSc verson on macOZ for jenkins — galbramc / detail
Suppress tetgen CMake warning. Relax tolerance for macOS — galbramc / detail
Allow MKL as BLAS library. Update macOS PETSc. Fix tolerance. — galbramc / detail
Add option to dump per rank matrix market file from PETSc — galbramc / detail
1st crack at SPE10 test case; compiles but errors out when run; — allmaras / detail
unit tests for PorosityModel_CartTable — allmaras / detail
unit tests for Porosivity and Permeability — allmaras / detail
Fix for PETSc matrix market dump — galbramc / detail
bug fixes in 2-phase porous flow classes/tests; added CartTable unit tests for PDETwoPhase2D — allmaras / detail
updated SPE10 test case to include lookup poro/perm tables; BCs now complaining about CartTable — allmaras / detail
reverted to original functionality on fluxAdvectiveUpwind: no-op rather than developer exception; — allmaras / detail
added "#include <fstream>" in lookup table tests — allmaras / detail
SPE10 testcase: added avro include files and check on SANS_AVRO — allmaras / detail
cppcheck fixes — galbramc / detail
Jenkins updates — galbramc / detail
Added Kyle Anderson k-ordering to PETSc — galbramc / detail
Another jenkins update — galbramc / detail
Fix warnings — galbramc / detail
vmsd sip -> vmsd br2 in sandbox — cfrontin / detail
Update CMake build to Nlopt 2.6.1 — galbramc / detail
SPE10 testcase: added needed instantiations for BC parameters, algebraic eq set, error estimates — allmaras / detail
more vmsd sip -> vmsd br2 in sandbox — cfrontin / detail
Fix k-ordering — galbramc / detail
Fix for k-ordering with BAIJ PETSc matrices — galbramc / detail
fixed typo in comments; no change in functionality — allmaras / detail
SPE10 testcase: fixed typos/bugs in instantiations — allmaras / detail
SPE10: changed avro check to BOOST_FAIL, so code always compiles even if USE_AVRO not defined — allmaras / detail
Implemented refine 2D API interface — galbramc / detail
SPE10: generalized output functional to sum over a vector of outflow wells — allmaras / detail
SPE10: added multiple wells to output functional — allmaras / detail
SPE10: trying to achieve successful compile when SANS_AVRO not defined — allmaras / detail
SPE10: added checks on porosity & permeability table lookups — allmaras / detail
Upgrade ccache version — galbramc / detail
vmsd -> sip again — cfrontin / detail
2D refine updates to swork with CAD. Not done yet. — galbramc / detail
Fix compile error — galbramc / detail
Suppress some cppcheck warnings — galbramc / detail
Tweak for jenkins Commit script — galbramc / detail
less sharp exact soln, BR2 not SIP — cfrontin / detail
and output fix — cfrontin / detail
eliminated option to use single/scalar source to initialize OutputTwoPhase2D_Flowrate; — allmaras / detail
added test for 1x1 constant lookup table — allmaras / detail
typo fix in output functional source class name (SourceClass -> SourceOutflowClass) — allmaras / detail
another intel suppression for valgrind — galbramc / detail
cppcheck suppression — galbramc / detail
Added a scaling factor to PermeabilityModel2D_CartTable to fix units in SPE10 case. Added rock compressibility to PorosityModel_CartTable, and updated unit tests. Added phi, Kxx, and Kyy as derived quantities to PDETwoPhase2D for visualization. Added table look-up files with homogeneous data for SPE10. — savithru / detail
Fixed unused variable warning — savithru / detail
forcing function adjustment... not improved :( — cfrontin / detail
Update for latest refine — galbramc / detail
SingularException destructor instantiation — galbramc / detail
Rename BCEulermitAVDiffusion to BCEulermitAVSensor since the name makes more sense — blsc / detail
First pass at including artificial viscosity model from Holst (2020) — blsc / detail
GCC9 caught some unitialized data — blsc / detail
A few bugs — blsc / detail
Unit tests and associated bug fixes — blsc / detail
Fix library ordering for HSM — galbramc / detail
Updated gcc warning regex — galbramc / detail
Increase timout times — galbramc / detail
Slight correction to refine unit test — galbramc / detail
Updates for refine incliding 2D triangle hack. Still need help from Mike. — galbramc / detail
Dissable refine 2D test — galbramc / detail
Refine now works in 2D — galbramc / detail
Add restart interface for refine — galbramc / detail
Increase timeour for refine2D tests — galbramc / detail
Use MPI_sleep for avro execution — galbramc / detail
Only write EGADS file from one processor and reduce iterations in refine2D_btest — galbramc / detail
Add missing include — galbramc / detail
Relax refine timie a bit more — galbramc / detail
Add missing link library — galbramc / detail
refine2D with EGADS still does not quite work. — galbramc / detail
Fix for parallel 2D refine — galbramc / detail
One more refine fix — galbramc / detail
Only remove files on the rank 0 processor — galbramc / detail
Warning fixes — galbramc / detail
Fix up Box Tet WakeCut for adjoint — galbramc / detail
Added Ismail-Roe entropy conservative flux (with optional entropy fix based on Harten) in 2D. Unit tested to ensure: primal and entropy consistency for the entropy conservative formulation, primal consistency and entropy dissipation for version with entropy fix. Extension to RANSSA NOT implemented. — blsc / detail
Added header: src/pde/NS/Roe.h to src/pde/NS/IsmailRoe.h to it can access datatype: RoeEntropyFix — blsc / detail
Typo fix in enum RoeEntropyFix: eIsmailRoeEntopyNeutral -> eIsmailRoeEntropyNeutral — blsc / detail
Added SPE10 permeability datasets with reduced contrast ratios — savithru / detail
Updated quarter five spot case to use avro — savithru / detail
lorenz building, not converging. need unit tests. — blsc / detail
in progress... — blsc / detail
lorenz in progress, not converging, seems to need stabilization. — blsc / detail
working on vmsd. — blsc / detail
added DG, broken. now VMSD and DGBR2 are both broken and CG is unstable :) — blsc / detail
more of the same. — blsc / detail
made some fixes, fem of lorenz seems to be working (w/ 4M elements...) — blsc / detail
trying to figure out what's wrong — blsc / detail
unit test addition.. — blsc / detail
hmm looking for valgrid shit now. — blsc / detail
added exact solution for alpha=0 case. — blsc / detail
configured for convergence test, convergent. — blsc / detail
output tricks — blsc / detail
working on homotopy pde — blsc / detail
for marshall — blsc / detail
Some progress for BCHomotopy — blsc / detail
homotopy in progress (still) — blsc / detail
on the way to a block 2x2 version of htc... — blsc / detail
slow but steady. — blsc / detail
on the curve between the easy solution and the hard one — blsc / detail
bob loblaw law blog — blsc / detail
homotopy might be working might be leaking might be a figment of my imagination. — blsc / detail
fieldbase uninitialized data fix. — blsc / detail
homotopy running but breaking for chaos :( — blsc / detail
added dumps — blsc / detail
fixed homotopy bug i think. — blsc / detail
added adaptive stepping to homotopy. — blsc / detail
ready for ben — blsc / detail
state of the art — blsc / detail
small changes. — blsc / detail
Removed PDE template from BCLorenz since it was no longer needed. Generalized the new homotopy integrand so it can be applied to Real and VectorS PDE::ArrayQ types. Updates required adding move construction and move assignment operator to VectorBlock_2 to prevent warnings about using implicit constructors under g++9. Propogated the required changes to unit test and sandbox cases. — blsc / detail
Statically condensed VMSD with homotopy: Updated the jacobian functions in the the HTC algebraic equation set, added logic for static condensation to Block 2x2 matrix interface with UMFPACK, and also had to expose the types of the vectors in VectorBlock_2. Also updated the Homotopy logic to be more robust, which mostly consists of making sure steps taken in the predictor phase are valid. — blsc / detail
Added ability to pass q and qp into source term individually for VMSDBR2. This is needed for some of the resolution sensors I am experimenting with for shock capturing. This required an additional source function to be added to PDEs that takes q, qp, gradq, and gradqp. Currently, this new function forwards (q+qp) and (gradq+gradqp) to the original source function. Unit tests have been added to test consistency of this new source term. — blsc / detail
Added new boundary condition: BCTypeFullStateRadialInflow_mitState. This is a FullState_mitState style boundary condition, except velocity magnitude is specified. The direction is then calculated as radially outward from an origin at (0,0). — blsc / detail
Added PDESourceOnly2D which implements a pde q - a = 0. This is for use as the auxiliary equation for Homotopy continuation. Unit tests added to applying this PDE to adevction diffusion, Euler and Euler with artificial diffusion. Also found that the jacobianMasterState and jacobianFluxAdvectveTime functions were reversed for the sensor PDE. This has been fixed and unit tests updated. — blsc / detail
Setting up a bump in a subsonic inviscid flow. Now verbose enables / disables all console output of the halving linesearch. Also added some extra function to PDEEuler2D to forward calls that have params. — blsc / detail
Added sourceCoarse and sourceFine function calls to VMSDBR2, which are source terms weighted against the coarse and fine space test functions respectively. For the most part these forward calls to the source function in the PDE. These are required because VMSD does not have a unique solution for the PDE q - a = 0 if a is a constant. Since this is the case in the SourceOnly PDE, that PDE now solves (\bar{q} - a) = 0, and q' = 0. — blsc / detail
Setting up RadialShock problem using VMSDBR2 and Homotopy. This required instantiating objects relating to the Block 2x2 linear algebra for PDEs of dimension 5. It also required adding the new source functions to the Sensor PDE. — blsc / detail
Renamed eLaplaceViscosity to eLaplaceViscosityEnthalpy in enum EulerArtViscosity. This is a more descriptive name for this option: artificial diffusion is applied to the gradient of total enthalpy (not total internal energy as a pure Laplacian operator would suggest). Now the option eLaplaceViscosityEnergy can be added to the enum EulerArtViscosity to describe the artificial diffusion being applied to the conservation variables. — blsc / detail
Upgraded to latest AFLR — galbramc / detail
Added eLaplaceViscosityEnergy to enum EulerArtViscosity. This applies a Laplacian operator to the conservation variable gradient (i.e. energy gradient not enthalpy gradient). System tests have been added to ensure that the calculation is correct for Euler2D and RANSSA2D PDEs. — blsc / detail
Fixed two bugs highlighted by Jenkins. 1) PDELorenz was using abs on a Real. 2) Several lines in SolutionFunction_Euler2D.h were too long. — blsc / detail
Look for Real Time library for AFLR — galbramc / detail
Fix for last commit — galbramc / detail
A few AFLR fixes — galbramc / detail
Previous commits overwrote some updates to the PETSc interface, so had to revert to commit 8fa5bcb008f4c19ec223d6ebfa628f6d4d9354cd for those files. Also updated files that failed vera checks. — blsc / detail
Instantiations for Block2x2 systems for a PDE of 5 equations were missing from MKL. Also, the version of UMFPack on Ubuntu 12.04 does not support the new exception types, so have reverted src/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver.cpp back to commit 45d3cd53036a51bccf943d9c5097544bd220d8f8 — blsc / detail
Relaxed tolerances on JacobianCell_VMSD_BR2_AD_btest for intel. Added #ifdef protection on the new UMFPACk error flags for older versions of UMFPack (pre 5.5) — blsc / detail
Updated BuildBoost to Boost 1.72 — galbramc / detail
Updated AFLR to 16.30.11. Lots of cppcheck fixes. — galbramc / detail
Add missing include — galbramc / detail
Fixes for AFLR4 farfield mesh generation — galbramc / detail
A few nightly fixes — galbramc / detail
Add continuousGlobalMap for LIP solvers — galbramc / detail
Fix the last fix — galbramc / detail
Use CMake python when building boost — galbramc / detail
Fix for gold linker with MKL — galbramc / detail
Some more nightly fixes — galbramc / detail
One more nightly fix — galbramc / detail
CMake fixes for CentOS 8 — galbramc / detail
Relax timing some more — galbramc / detail
Correction for finding boost python — galbramc / detail
Some more time relaxation — galbramc / detail
Look for vera++ on CentOS 8 as well — galbramc / detail
speed up a system test by using a better initial solution — shunz / detail
Boost numpy was added with 1.65 — galbramc / detail
remove some system tests that are no longer essential — shunz / detail
remove more non-essential system test — shunz / detail
remove more non-essential system test — shunz / detail
Check if NLOPT direcfory exists on jenkins node — galbramc / detail
Fix array out of bounds for refine. Fix parallel make for jenkins. — galbramc / detail

#260 (Apr 16, 2020, 8:54:53 PM)

Added variable interpreter for primary unknowns = {delta*, theta, G} — shunz / detail
Refactored IBL profile type identifier — shunz / detail
Added unit tests to VarInterpret — shunz / detail
Fixed unit test — shunz / detail
Added a new class for calculating thicknesses and coeffcients, along with unit tests. — shunz / detail
Typo fixes — shunz / detail
Refactored PDEIBLUniField to use genealized thicknesses/coeffcients calculation routines. Verified uncoupled IBL run with airfoil only — shunz / detail
Refactoring to get coupled IBLUniField to work without transition. Caveat: pyrite check is fine with delta & A variables, but mismatches G (maybe numerical precision issue? to be eamined) — shunz / detail
Cleaned up obsolete stuff — shunz / detail
Cleanup — shunz / detail
Renaming/cleanup — shunz / detail
Preliminary implementation of correlation closure — shunz / detail
Minor refactoring — shunz / detail
First run of correlation-closure IBL on an uncoupled airfoil-only case, compared reasonably well with profile-closure results — shunz / detail
minor edit — shunz / detail
Added turbulent closure from MSES paper. Ran coupled IBL on airfoil+wake configuration, comparing reasonably well with IBL based on profile closures — shunz / detail
Distinguished H from Hk (kinematic). — shunz / detail
Reduced code repetition — shunz / detail
Added some XFOIL closures — shunz / detail
Added more XFOIL closures — shunz / detail
Typo fixes — shunz / detail
Refactored Uslip calculation — shunz / detail
Fixed a typo in xfoil laminar BL closure — shunz / detail
Added pyrite check for XFOIL laminar BL closure — shunz / detail
Recovered the correct double dissipation for wake. Added pyrite files — shunz / detail
Added output dumping functions for correlation-closure IBL — shunz / detail
Refactored output function and added a utility function — shunz / detail
Added XFOIL amplification growth rate closure, which is almost identical to IBL — shunz / detail
Modified lag equation and CDiss closure a bit. — shunz / detail
With modified lag equation, laminarBL+turbulentWake results matches XFOIL very closely — shunz / detail
Added captured transition test case with pyrite file for correlation-based IBL — shunz / detail
Fixed an innocuous bug — shunz / detail
Re-enabled LF flux — shunz / detail
Added machinery for loading up IBL solution from input file — shunz / detail
Make LF flux a default for IBL — shunz / detail
Refactored blended intermittency calculation for correlation-based closure — shunz / detail
Do no apply blending for wake — shunz / detail
Switched to generalized thickness/coeffcient calculation for duplicate-field IBL as well. Verified uncoupled airfoil case with full upwind — shunz / detail
Bug fix — shunz / detail
Verified coupled case with laminarBL+turbulentWake — shunz / detail
Minor refactoring — shunz / detail
minor cleanup — shunz / detail
Added instantiation and fixed transition test cases — shunz / detail
Added a missing method — shunz / detail
Added a pyrite check for NACA0012 case (with flow separation) — shunz / detail
Added a different set of initial solution. Allowed for laminar BL to turn turbulent during transient state — shunz / detail
Added new IBL variable type — shunz / detail
Added unit tests and fixed bugs — shunz / detail
Generalized dummy equations in duplicate-field IBL pde class — shunz / detail
Follow-up fixes for test cases affected by earlier commits — shunz / detail
Refactored solution initialization — shunz / detail
Enabled correlation-based two-field IBL formulation. Added test case of coupled IBL with lamiBL+turbWake and corresponding pyrite file. — shunz / detail
Refactored updateFraction in PDEIBL and also fixed the sign in solution update — shunz / detail
Generalized cut-cell machinery to handle two different sets of IBL primary unknowns — shunz / detail
Added pyrite check — shunz / detail
Added comments — shunz / detail
Minor refactoring. Added missing initial solution file — shunz / detail
Intermediate commit — shunz / detail
Cleaned up test cases — shunz / detail
Refactored updateFraction — shunz / detail
Added a pyrite check — shunz / detail
Relaxed tolerance — shunz / detail
Refactoring updateFraction. Added an expedient guard against too small Hk — shunz / detail
Added underrelaxation — shunz / detail
Added underrelaxation-related stuff — shunz / detail
Cosmetic edtis — shunz / detail
Verified pyrite check for fitted-transition IBL on NACA0012 Re=1e5 massively separated laminar BL — shunz / detail
Added Cf replacement for turbulent BL with too small Retheta — shunz / detail
Added a pyrite file — shunz / detail
Added a pyrite file — shunz / detail
BC refactoring and unit test fix — shunz / detail
Refactored BC and added unit tests — shunz / detail
Improved coverage by removing redundant safety guards — shunz / detail
Just renaming — shunz / detail
Refactoring and unit testing — shunz / detail
Fixed a bug in Cf correlation. Added unit test — shunz / detail
Type fix — shunz / detail
Unit tested correlations from XFOIL. — shunz / detail
Refactored amplification growth correlation calculation for speedup --> changed the floating-point arithmetic a bit Added unit tests. — shunz / detail
added comments — shunz / detail
Cleanup — shunz / detail
Cleanup — shunz / detail
Dump additional output files for examination — shunz / detail
Unit test fixes — shunz / detail
More unit test fixes — shunz / detail
Unit test fix — shunz / detail
Refactored blended intermittency calculation and added unit tests — shunz / detail
Refactored updateFraction and added unit tests — shunz / detail
minor fixes — shunz / detail
matching old system pyrite test: coupled IBLUniField profile-closure lamiBL+turbWake — shunz / detail
Changed initial solution guess — shunz / detail
Bug fix. Equality operator is sensitive to type: std::string vs its reference. — shunz / detail
Minor refactoring — shunz / detail
Added comments — shunz / detail
Refactored unit tests — shunz / detail
Refactored source terms and added unit tests for PDEIBL2D — shunz / detail
Refactored ctau_{turb,init}. Unit tested turbulent sub-cell source term for amplification eqn in cut-cell transition formulation — shunz / detail
Fix for vera formatting check. Also a minor refactoring — shunz / detail
Minor refactoring — shunz / detail
Refactored ctau_{turb,init} fitting calculation — shunz / detail
Forgot to save this in the last commit... — shunz / detail
Unit-tested upwind advective flux in two-fIeld IBL pde class — shunz / detail
Minor commenting — shunz / detail
Minor refactoring — shunz / detail
minor refactoring — shunz / detail
Refactored dummy matching equations for fitted transition — shunz / detail
Forgot to commit this in the last pass — shunz / detail
Modified artificial amplification source term in fully turbulent elements. Pluse other minor refactoring — shunz / detail
Make sure scales are non-negative — shunz / detail
Enabled G=ln(ctau^0.5) as a primary unknown in place of ctau. It helps with nonlinear solution. — shunz / detail
Fixed unit tests — shunz / detail
Dumping matching variables for transition — shunz / detail
Refactored underrelaxation to guard against zero G. Added forced-transition subiteration output dump — shunz / detail
Turned off limiting on G variable. Made H validity check tighter — shunz / detail
Playing with a different form of lag equation in fitted transition approach. Not much luck though. So, as of now, using G as the primary unknown is already helpful — shunz / detail
Playing with point source for setting ctau_{Turb,init} — shunz / detail
Refactored forced transition point source for ctau jump — shunz / detail
playing with point source for ctau jump in free transition — shunz / detail
Tried implementing ctau jump condition via flux modification — shunz / detail
Got a captured transition result with sharp ctau jump at free transition front — shunz / detail
Added explicit instantiation — shunz / detail
Genearalized HubTrace boundary trace integrand by ridding of any PDE/BC dependence — shunz / detail
Generalized IBL solution DOF setter — shunz / detail
Implemented a different formulation for captured transition by splitting the amplification and lag equations — shunz / detail
Added instantiations — shunz / detail
Fixed amplification and lag source terms in new IBL PDE class — shunz / detail
Verified NACA0012 Re1e5 results against XFOIL (separated fully laminar BL) — shunz / detail
Add a lower limit to the modeled turbulent initial ctau — shunz / detail
Minor refactoring — shunz / detail
Fixed a bug in solution initialization — shunz / detail
Refactored masterState calculation from cumulation to assignment — shunz / detail
minor tidying — shunz / detail
Refactored smooth intermittency blending to allow for natural and forced transition as the same time — shunz / detail
Allowed for initializing p0 IBL solution from input file — shunz / detail
Added H upper limit in validity check — shunz / detail
SplitAmpLag working on NACA0012 Re 2e5 separation bubble — shunz / detail
Cosmetic edit — shunz / detail
Decoupled nt variables of BL from nt of the wake — shunz / detail
Converged p=0 solution on ne64 and n128 grids for Eppler 387 case — shunz / detail
minor cleanup — shunz / detail
renaming — shunz / detail
Refactored state validity check — shunz / detail
minor refactoring — shunz / detail
Added IO files for testing Eppler 387 airfoil — shunz / detail
Typo fix — shunz / detail
Tried PTC for IBLSplitAmpLag captured transition case — shunz / detail
Further simplified amplification equation at hubtrace — shunz / detail
Added grid and initial solution files — shunz / detail
minor cleanup — shunz / detail
added hessian to Joukowski solution — allmaras / detail
bug fix in Joukowski test — allmaras / detail
Minor edit — shunz / detail
Refactored a case — shunz / detail
Fixed calls to jacobianTranspose of daisy-chained algebraic equation set — shunz / detail
Cleanup — shunz / detail
minor refactoring — shunz / detail
minor edit to running case — shunz / detail
Refactored printed normed reisudals when line-search fails. — shunz / detail
Refactored running case — shunz / detail
Minor cleanup — shunz / detail
Minor fix — shunz / detail
Refactored uncoupled IBL case and added pyrite file — shunz / detail
Fixed HDG continuous implementation. Reverted to Var(delta, A, G) to not hacking scaling delta and A. Cleaned up some system tests — shunz / detail
Refactored two test cases — shunz / detail
Added Hk lower limit check when checking state validity for IBLUniField with correlation closures — shunz / detail
Added pyrite check file. Refactored test cases and enabled PTC on one of them. — shunz / detail
Fix pyrite check — shunz / detail
Fixed undefined variables — shunz / detail
Updated a pyrite file to be consistent with the latest settings in IBLUniField — shunz / detail
Deleted a redundant case — shunz / detail
added some commented out hack for fully turbulent BL simulation with IBLUniField — shunz / detail
Updated pyrite file — shunz / detail
Added exceptions as safe guards — shunz / detail
cosmetic refactoring — shunz / detail
cosmetic refactoring — shunz / detail
Added a pyrite file and changed test file name — shunz / detail
turned on set IBL dofs for p=0 for DsThG — shunz / detail
Dumped singular jacobian when UMFPACK finds it — shunz / detail
Refactored system test cases — shunz / detail
Using a less conservative initial CFL for PTC in a test case — shunz / detail
Refactored system test case — shunz / detail
Added some auxiliary functions for system test cases — shunz / detail
Added some debugging options — shunz / detail
Minor refactoring — shunz / detail
Simplified upwind flux in IBL to improve code reuse — shunz / detail
Commented out hacks. Added minor guards. Dumped matrix when UMFPACK linear solve fails. — shunz / detail
Laminar-turbulent blending works for Eppler 387 now. Turned on G limiting in updateFraction — shunz / detail
Cleaned up and refactored projection to Qauxi — shunz / detail
Removed redundant TopoDim templates following Hugh's recent updates — shunz / detail
playing with numerical flux and nt growth rate in laminar-turbulent blending formulation — shunz / detail
Playing with various grid-dependent laminar-turbulent blending strategies — shunz / detail
minor cleanup — shunz / detail
Use value instead of reference since equivalence is checked instead of identity — shunz / detail
Added output — shunz / detail
Tweaked LF flux dissipation coefficient a bit. Modified lag source term to prevent ctau to drop with ctau_Tinit after reaching its peak. Hacking grid dependent blending. Left system test case unchecked for the moment — shunz / detail
Added Hs derivatives with unit tests. Fixed typos in closure unit tests — shunz / detail
Abstracted Re_theta calculation — shunz / detail
Added Roe flux based on arithmetic average state — shunz / detail
Added class for setting qaux field from file — shunz / detail
Typo fix — shunz / detail
Minor refactoring — shunz / detail
Output blended IBL quantities — shunz / detail
Added an uncoupled IBL case — shunz / detail
Added qinif initialization to a shared file for setting up IBL case — shunz / detail
Using qinf initialization from a shared file — shunz / detail
Refactored Roe flux for IBL — shunz / detail
Added entropy fix — shunz / detail
Just hacking around. The hacky stuff are turned off — shunz / detail
Reformulated DG-IBL interface flux and finally fixed solution oscillation in transition cases. Saved other miscellaneous updates — shunz / detail
cosmetic changes (with hacks being commented out) — shunz / detail
Normalize KE equation by q^2 — shunz / detail
editted comments — shunz / detail
Use pde fluxAdvective function to calculate outflow flux at Hubtrace boundary — shunz / detail
cleaned up some hacks — shunz / detail
minor cleanup — shunz / detail
Accidentally messed up blended source term. Restore it now. — shunz / detail
Stashed some intermediate edits — shunz / detail
Fixed the numerical flux of IBL momentum equations to eliminate solution jumps and/or oscillations. Also cleaned up temporary hacks. — shunz / detail
Make intermittency length scale a parameter in the transition model. Cleaned up old hacks in in PDEIBLSplitAmpLag2D — shunz / detail
More cleanup — shunz / detail
minor edits — shunz / detail
Disable search for boost-cmake; otherwise, runs into conflicts with FindBoost. Need to resolve this if using boost-cmake in the future — shunz / detail
Minor cleanup following last merge commit — shunz / detail
Minor fixes to keep up with changes in the main branch — shunz / detail
Add pyrite check on E387 airfoil transition separation bubble case — shunz / detail
Update Solve2D_Coupled4x4_IBLSplitAmpLag_CorrelationClosure_CapturedTransition_PTC_btest.cpp — shunz / detail
Cleaned up the numerical flux options in Qauxi projection. All three numerical fluxes produce similar well-behaved results. Add a sandbox case — shunz / detail
working on advective field case... — cfrontin / detail
asdfasdf — cfrontin / detail
working on the advective field and it's broken LOL — cfrontin / detail
fix mpi dg — cfrontin / detail
trying to figure out idiosyncracy — cfrontin / detail
cont'd — cfrontin / detail
cont'd pt. ii — cfrontin / detail
name fix — cfrontin / detail
oopsie — cfrontin / detail
working on random field — cfrontin / detail
updated random fields, should be working but untested. — cfrontin / detail
unit tests for adjoint — arthuang / detail
fixes to compute AR etc. — hcarson / detail
Fix for EPIC 2D without geometry — galbramc / detail
jenkins fix, holdover code. — cfrontin / detail
adding block pivoting to ilu — arthuang / detail
a VMSDBR2 version of the DeltaWing Chain toy — hcarson / detail
Enable static condensation with MKL — galbramc / detail
Missed a static condensation step — galbramc / detail
Another MKL static condensation fix — galbramc / detail
Relaxed tolerance — galbramc / detail
a VMSDBR2 Double BL, also lining up the 3 so that they are the same. HOWEVER, Seems to be something very wrong with plain VMSD, the adapt looks crap and the error is enormous.... — hcarson / detail
Updates for latest refine — galbramc / detail
urop fix? — cfrontin / detail
jenkins fix, odds and ends. — cfrontin / detail
added 2D+T VMSD AD case. — cfrontin / detail
minor edit — shunz / detail
refactored the new PDE IBL class and added unit tests — shunz / detail
fixed LF flux — shunz / detail
Relocated blended intermittency to PDE class. Added unit tests. — shunz / detail
Added unit tests to VarInterpret — shunz / detail
Fixed intermittency usage in auxi equation — shunz / detail
refactored intermittency calculation calling signature across different variants of IBL formulations — shunz / detail
Fixed type — shunz / detail
Refactored unit tests to keep up with updates in the thickness class — shunz / detail
Cleaned up manifold interface integrand implementation. Minor type corrections for unit tests involving Surreal types. — shunz / detail
Fixed ping tests by adjusting the reference solution and step size — shunz / detail
Refactored PDEIBLSplitAmgLag2D default flux and ctau_min. Added pyrite check files — shunz / detail
updated pyrite files — shunz / detail
Refactored IBL solution file reader. Cleaned up system tests for various IBL formulations — shunz / detail
Removed IO file clutter — shunz / detail
Added variable data constructors. Fixed types. File cleanup — shunz / detail
Fixed IBL solution reader usage — shunz / detail
Recovered a system test on IBLUniField — shunz / detail
Cleaned up system tests — shunz / detail
Fixed IBL solution reader usage — shunz / detail
Fixed duplicate symbols by inline. Added a missing pyrite check file — shunz / detail
Relaxed pyrite tolerance. Fixed unit tests for IBL soluton file reader — shunz / detail
Suppressed file output for Jenkins — shunz / detail
Suppressed one more file output for Jenkins. — shunz / detail
Fixed unused variable — shunz / detail
Relaxed pyrite tolerances for gnu — shunz / detail
Subtle typo in pyrite filename — shunz / detail
Relaxed tolerances for intel compilers — shunz / detail
Relaxed pyrite tolerance. Added explicit instantiation to fix linker error — shunz / detail
Relaxed tolerance. Fixed timeout on Jenkins — shunz / detail
Relaxed pyrite tolerances — shunz / detail
relaxed tolerance on d/dxdy test — allmaras / detail
Replace Joukowski q1 grid — galbramc / detail
coverage improvement — cfrontin / detail
hotfix — cfrontin / detail
quick fix — cfrontin / detail
Attempt to use parallel MKL (does not work yet). Other small cleanups. — galbramc / detail
Added cartesian table lookup for PorusMedia SPE calculations — galbramc / detail
Use atlas blas on rhel7 — galbramc / detail
2d+t hex solve patch. — cfrontin / detail
belated nomenclature fix — cfrontin / detail
Consistent delete — galbramc / detail
VMSDBR2 3D+T additions. — cfrontin / detail
added squarechannel vmsd br2 changes — cfrontin / detail
General PETSc verson on macOZ for jenkins — galbramc / detail
Suppress tetgen CMake warning. Relax tolerance for macOS — galbramc / detail
Allow MKL as BLAS library. Update macOS PETSc. Fix tolerance. — galbramc / detail
Add option to dump per rank matrix market file from PETSc — galbramc / detail
1st crack at SPE10 test case; compiles but errors out when run; — allmaras / detail
unit tests for PorosityModel_CartTable — allmaras / detail
unit tests for Porosivity and Permeability — allmaras / detail
Fix for PETSc matrix market dump — galbramc / detail
bug fixes in 2-phase porous flow classes/tests; added CartTable unit tests for PDETwoPhase2D — allmaras / detail
updated SPE10 test case to include lookup poro/perm tables; BCs now complaining about CartTable — allmaras / detail
reverted to original functionality on fluxAdvectiveUpwind: no-op rather than developer exception; — allmaras / detail
added "#include <fstream>" in lookup table tests — allmaras / detail
SPE10 testcase: added avro include files and check on SANS_AVRO — allmaras / detail
cppcheck fixes — galbramc / detail
Jenkins updates — galbramc / detail
Added Kyle Anderson k-ordering to PETSc — galbramc / detail
Another jenkins update — galbramc / detail
Fix warnings — galbramc / detail
vmsd sip -> vmsd br2 in sandbox — cfrontin / detail
Update CMake build to Nlopt 2.6.1 — galbramc / detail
SPE10 testcase: added needed instantiations for BC parameters, algebraic eq set, error estimates — allmaras / detail
more vmsd sip -> vmsd br2 in sandbox — cfrontin / detail
Fix k-ordering — galbramc / detail
Fix for k-ordering with BAIJ PETSc matrices — galbramc / detail
fixed typo in comments; no change in functionality — allmaras / detail
SPE10 testcase: fixed typos/bugs in instantiations — allmaras / detail
SPE10: changed avro check to BOOST_FAIL, so code always compiles even if USE_AVRO not defined — allmaras / detail
Implemented refine 2D API interface — galbramc / detail
SPE10: generalized output functional to sum over a vector of outflow wells — allmaras / detail
SPE10: added multiple wells to output functional — allmaras / detail
SPE10: trying to achieve successful compile when SANS_AVRO not defined — allmaras / detail
SPE10: added checks on porosity & permeability table lookups — allmaras / detail
Upgrade ccache version — galbramc / detail
vmsd -> sip again — cfrontin / detail
2D refine updates to swork with CAD. Not done yet. — galbramc / detail
Fix compile error — galbramc / detail
Suppress some cppcheck warnings — galbramc / detail
Tweak for jenkins Commit script — galbramc / detail
less sharp exact soln, BR2 not SIP — cfrontin / detail
and output fix — cfrontin / detail
eliminated option to use single/scalar source to initialize OutputTwoPhase2D_Flowrate; — allmaras / detail
added test for 1x1 constant lookup table — allmaras / detail
typo fix in output functional source class name (SourceClass -> SourceOutflowClass) — allmaras / detail
another intel suppression for valgrind — galbramc / detail
cppcheck suppression — galbramc / detail
Added a scaling factor to PermeabilityModel2D_CartTable to fix units in SPE10 case. Added rock compressibility to PorosityModel_CartTable, and updated unit tests. Added phi, Kxx, and Kyy as derived quantities to PDETwoPhase2D for visualization. Added table look-up files with homogeneous data for SPE10. — savithru / detail
Fixed unused variable warning — savithru / detail
forcing function adjustment... not improved :( — cfrontin / detail
Update for latest refine — galbramc / detail
SingularException destructor instantiation — galbramc / detail
Rename BCEulermitAVDiffusion to BCEulermitAVSensor since the name makes more sense — blsc / detail
First pass at including artificial viscosity model from Holst (2020) — blsc / detail
GCC9 caught some unitialized data — blsc / detail
A few bugs — blsc / detail
Unit tests and associated bug fixes — blsc / detail
Fix library ordering for HSM — galbramc / detail
Updated gcc warning regex — galbramc / detail
Increase timout times — galbramc / detail
Slight correction to refine unit test — galbramc / detail
Updates for refine incliding 2D triangle hack. Still need help from Mike. — galbramc / detail
Dissable refine 2D test — galbramc / detail
Refine now works in 2D — galbramc / detail
Add restart interface for refine — galbramc / detail
Increase timeour for refine2D tests — galbramc / detail
Use MPI_sleep for avro execution — galbramc / detail
Only write EGADS file from one processor and reduce iterations in refine2D_btest — galbramc / detail
Add missing include — galbramc / detail
Relax refine timie a bit more — galbramc / detail
Add missing link library — galbramc / detail
refine2D with EGADS still does not quite work. — galbramc / detail
Fix for parallel 2D refine — galbramc / detail
One more refine fix — galbramc / detail
Only remove files on the rank 0 processor — galbramc / detail
Warning fixes — galbramc / detail
Fix up Box Tet WakeCut for adjoint — galbramc / detail
Added Ismail-Roe entropy conservative flux (with optional entropy fix based on Harten) in 2D. Unit tested to ensure: primal and entropy consistency for the entropy conservative formulation, primal consistency and entropy dissipation for version with entropy fix. Extension to RANSSA NOT implemented. — blsc / detail
Added header: src/pde/NS/Roe.h to src/pde/NS/IsmailRoe.h to it can access datatype: RoeEntropyFix — blsc / detail
Typo fix in enum RoeEntropyFix: eIsmailRoeEntopyNeutral -> eIsmailRoeEntropyNeutral — blsc / detail
Added SPE10 permeability datasets with reduced contrast ratios — savithru / detail
Updated quarter five spot case to use avro — savithru / detail
lorenz building, not converging. need unit tests. — blsc / detail
in progress... — blsc / detail
lorenz in progress, not converging, seems to need stabilization. — blsc / detail
working on vmsd. — blsc / detail
added DG, broken. now VMSD and DGBR2 are both broken and CG is unstable :) — blsc / detail
more of the same. — blsc / detail
made some fixes, fem of lorenz seems to be working (w/ 4M elements...) — blsc / detail
trying to figure out what's wrong — blsc / detail
unit test addition.. — blsc / detail
hmm looking for valgrid shit now. — blsc / detail
added exact solution for alpha=0 case. — blsc / detail
configured for convergence test, convergent. — blsc / detail
output tricks — blsc / detail
working on homotopy pde — blsc / detail
for marshall — blsc / detail
Some progress for BCHomotopy — blsc / detail
homotopy in progress (still) — blsc / detail
on the way to a block 2x2 version of htc... — blsc / detail
slow but steady. — blsc / detail
on the curve between the easy solution and the hard one — blsc / detail
bob loblaw law blog — blsc / detail
homotopy might be working might be leaking might be a figment of my imagination. — blsc / detail
fieldbase uninitialized data fix. — blsc / detail
homotopy running but breaking for chaos :( — blsc / detail
added dumps — blsc / detail
fixed homotopy bug i think. — blsc / detail
added adaptive stepping to homotopy. — blsc / detail
ready for ben — blsc / detail
state of the art — blsc / detail
small changes. — blsc / detail
Removed PDE template from BCLorenz since it was no longer needed. Generalized the new homotopy integrand so it can be applied to Real and VectorS PDE::ArrayQ types. Updates required adding move construction and move assignment operator to VectorBlock_2 to prevent warnings about using implicit constructors under g++9. Propogated the required changes to unit test and sandbox cases. — blsc / detail
Statically condensed VMSD with homotopy: Updated the jacobian functions in the the HTC algebraic equation set, added logic for static condensation to Block 2x2 matrix interface with UMFPACK, and also had to expose the types of the vectors in VectorBlock_2. Also updated the Homotopy logic to be more robust, which mostly consists of making sure steps taken in the predictor phase are valid. — blsc / detail
Added ability to pass q and qp into source term individually for VMSDBR2. This is needed for some of the resolution sensors I am experimenting with for shock capturing. This required an additional source function to be added to PDEs that takes q, qp, gradq, and gradqp. Currently, this new function forwards (q+qp) and (gradq+gradqp) to the original source function. Unit tests have been added to test consistency of this new source term. — blsc / detail
Added new boundary condition: BCTypeFullStateRadialInflow_mitState. This is a FullState_mitState style boundary condition, except velocity magnitude is specified. The direction is then calculated as radially outward from an origin at (0,0). — blsc / detail
Added PDESourceOnly2D which implements a pde q - a = 0. This is for use as the auxiliary equation for Homotopy continuation. Unit tests added to applying this PDE to adevction diffusion, Euler and Euler with artificial diffusion. Also found that the jacobianMasterState and jacobianFluxAdvectveTime functions were reversed for the sensor PDE. This has been fixed and unit tests updated. — blsc / detail
Setting up a bump in a subsonic inviscid flow. Now verbose enables / disables all console output of the halving linesearch. Also added some extra function to PDEEuler2D to forward calls that have params. — blsc / detail
Added sourceCoarse and sourceFine function calls to VMSDBR2, which are source terms weighted against the coarse and fine space test functions respectively. For the most part these forward calls to the source function in the PDE. These are required because VMSD does not have a unique solution for the PDE q - a = 0 if a is a constant. Since this is the case in the SourceOnly PDE, that PDE now solves (\bar{q} - a) = 0, and q' = 0. — blsc / detail
Setting up RadialShock problem using VMSDBR2 and Homotopy. This required instantiating objects relating to the Block 2x2 linear algebra for PDEs of dimension 5. It also required adding the new source functions to the Sensor PDE. — blsc / detail
Renamed eLaplaceViscosity to eLaplaceViscosityEnthalpy in enum EulerArtViscosity. This is a more descriptive name for this option: artificial diffusion is applied to the gradient of total enthalpy (not total internal energy as a pure Laplacian operator would suggest). Now the option eLaplaceViscosityEnergy can be added to the enum EulerArtViscosity to describe the artificial diffusion being applied to the conservation variables. — blsc / detail
Upgraded to latest AFLR — galbramc / detail
Added eLaplaceViscosityEnergy to enum EulerArtViscosity. This applies a Laplacian operator to the conservation variable gradient (i.e. energy gradient not enthalpy gradient). System tests have been added to ensure that the calculation is correct for Euler2D and RANSSA2D PDEs. — blsc / detail
Fixed two bugs highlighted by Jenkins. 1) PDELorenz was using abs on a Real. 2) Several lines in SolutionFunction_Euler2D.h were too long. — blsc / detail
Look for Real Time library for AFLR — galbramc / detail
Fix for last commit — galbramc / detail
A few AFLR fixes — galbramc / detail
Previous commits overwrote some updates to the PETSc interface, so had to revert to commit 8fa5bcb008f4c19ec223d6ebfa628f6d4d9354cd for those files. Also updated files that failed vera checks. — blsc / detail
Instantiations for Block2x2 systems for a PDE of 5 equations were missing from MKL. Also, the version of UMFPack on Ubuntu 12.04 does not support the new exception types, so have reverted src/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver.cpp back to commit 45d3cd53036a51bccf943d9c5097544bd220d8f8 — blsc / detail
Relaxed tolerances on JacobianCell_VMSD_BR2_AD_btest for intel. Added #ifdef protection on the new UMFPACk error flags for older versions of UMFPack (pre 5.5) — blsc / detail
Updated BuildBoost to Boost 1.72 — galbramc / detail
Updated AFLR to 16.30.11. Lots of cppcheck fixes. — galbramc / detail
Add missing include — galbramc / detail
Fixes for AFLR4 farfield mesh generation — galbramc / detail
A few nightly fixes — galbramc / detail
Add continuousGlobalMap for LIP solvers — galbramc / detail
Fix the last fix — galbramc / detail
Use CMake python when building boost — galbramc / detail
Fix for gold linker with MKL — galbramc / detail
Some more nightly fixes — galbramc / detail
One more nightly fix — galbramc / detail
CMake fixes for CentOS 8 — galbramc / detail
Relax timing some more — galbramc / detail
Correction for finding boost python — galbramc / detail
Some more time relaxation — galbramc / detail
Look for vera++ on CentOS 8 as well — galbramc / detail
speed up a system test by using a better initial solution — shunz / detail
Boost numpy was added with 1.65 — galbramc / detail
remove some system tests that are no longer essential — shunz / detail
remove more non-essential system test — shunz / detail
remove more non-essential system test — shunz / detail
Check if NLOPT direcfory exists on jenkins node — galbramc / detail
Fix array out of bounds for refine. Fix parallel make for jenkins. — galbramc / detail

#259 (Apr 16, 2020, 8:05:33 AM)

Added variable interpreter for primary unknowns = {delta*, theta, G} — shunz / detail
Refactored IBL profile type identifier — shunz / detail
Added unit tests to VarInterpret — shunz / detail
Fixed unit test — shunz / detail
Added a new class for calculating thicknesses and coeffcients, along with unit tests. — shunz / detail
Typo fixes — shunz / detail
Refactored PDEIBLUniField to use genealized thicknesses/coeffcients calculation routines. Verified uncoupled IBL run with airfoil only — shunz / detail
Refactoring to get coupled IBLUniField to work without transition. Caveat: pyrite check is fine with delta & A variables, but mismatches G (maybe numerical precision issue? to be eamined) — shunz / detail
Cleaned up obsolete stuff — shunz / detail
Cleanup — shunz / detail
Renaming/cleanup — shunz / detail
Preliminary implementation of correlation closure — shunz / detail
Minor refactoring — shunz / detail
First run of correlation-closure IBL on an uncoupled airfoil-only case, compared reasonably well with profile-closure results — shunz / detail
minor edit — shunz / detail
Added turbulent closure from MSES paper. Ran coupled IBL on airfoil+wake configuration, comparing reasonably well with IBL based on profile closures — shunz / detail
Distinguished H from Hk (kinematic). — shunz / detail
Reduced code repetition — shunz / detail
Added some XFOIL closures — shunz / detail
Added more XFOIL closures — shunz / detail
Typo fixes — shunz / detail
Refactored Uslip calculation — shunz / detail
Fixed a typo in xfoil laminar BL closure — shunz / detail
Added pyrite check for XFOIL laminar BL closure — shunz / detail
Recovered the correct double dissipation for wake. Added pyrite files — shunz / detail
Added output dumping functions for correlation-closure IBL — shunz / detail
Refactored output function and added a utility function — shunz / detail
Added XFOIL amplification growth rate closure, which is almost identical to IBL — shunz / detail
Modified lag equation and CDiss closure a bit. — shunz / detail
With modified lag equation, laminarBL+turbulentWake results matches XFOIL very closely — shunz / detail
Added captured transition test case with pyrite file for correlation-based IBL — shunz / detail
Fixed an innocuous bug — shunz / detail
Re-enabled LF flux — shunz / detail
Added machinery for loading up IBL solution from input file — shunz / detail
Make LF flux a default for IBL — shunz / detail
Refactored blended intermittency calculation for correlation-based closure — shunz / detail
Do no apply blending for wake — shunz / detail
Switched to generalized thickness/coeffcient calculation for duplicate-field IBL as well. Verified uncoupled airfoil case with full upwind — shunz / detail
Bug fix — shunz / detail
Verified coupled case with laminarBL+turbulentWake — shunz / detail
Minor refactoring — shunz / detail
minor cleanup — shunz / detail
Added instantiation and fixed transition test cases — shunz / detail
Added a missing method — shunz / detail
Added a pyrite check for NACA0012 case (with flow separation) — shunz / detail
Added a different set of initial solution. Allowed for laminar BL to turn turbulent during transient state — shunz / detail
Added new IBL variable type — shunz / detail
Added unit tests and fixed bugs — shunz / detail
Generalized dummy equations in duplicate-field IBL pde class — shunz / detail
Follow-up fixes for test cases affected by earlier commits — shunz / detail
Refactored solution initialization — shunz / detail
Enabled correlation-based two-field IBL formulation. Added test case of coupled IBL with lamiBL+turbWake and corresponding pyrite file. — shunz / detail
Refactored updateFraction in PDEIBL and also fixed the sign in solution update — shunz / detail
Generalized cut-cell machinery to handle two different sets of IBL primary unknowns — shunz / detail
Added pyrite check — shunz / detail
Added comments — shunz / detail
Minor refactoring. Added missing initial solution file — shunz / detail
Intermediate commit — shunz / detail
Cleaned up test cases — shunz / detail
Refactored updateFraction — shunz / detail
Added a pyrite check — shunz / detail
Relaxed tolerance — shunz / detail
Refactoring updateFraction. Added an expedient guard against too small Hk — shunz / detail
Added underrelaxation — shunz / detail
Added underrelaxation-related stuff — shunz / detail
Cosmetic edtis — shunz / detail
Verified pyrite check for fitted-transition IBL on NACA0012 Re=1e5 massively separated laminar BL — shunz / detail
Added Cf replacement for turbulent BL with too small Retheta — shunz / detail
Added a pyrite file — shunz / detail
Added a pyrite file — shunz / detail
BC refactoring and unit test fix — shunz / detail
Refactored BC and added unit tests — shunz / detail
Improved coverage by removing redundant safety guards — shunz / detail
Just renaming — shunz / detail
Refactoring and unit testing — shunz / detail
Fixed a bug in Cf correlation. Added unit test — shunz / detail
Type fix — shunz / detail
Unit tested correlations from XFOIL. — shunz / detail
Refactored amplification growth correlation calculation for speedup --> changed the floating-point arithmetic a bit Added unit tests. — shunz / detail
added comments — shunz / detail
Cleanup — shunz / detail
Cleanup — shunz / detail
Dump additional output files for examination — shunz / detail
Unit test fixes — shunz / detail
More unit test fixes — shunz / detail
Unit test fix — shunz / detail
Refactored blended intermittency calculation and added unit tests — shunz / detail
Refactored updateFraction and added unit tests — shunz / detail
minor fixes — shunz / detail
matching old system pyrite test: coupled IBLUniField profile-closure lamiBL+turbWake — shunz / detail
Changed initial solution guess — shunz / detail
Bug fix. Equality operator is sensitive to type: std::string vs its reference. — shunz / detail
Minor refactoring — shunz / detail
Added comments — shunz / detail
Refactored unit tests — shunz / detail
Refactored source terms and added unit tests for PDEIBL2D — shunz / detail
Refactored ctau_{turb,init}. Unit tested turbulent sub-cell source term for amplification eqn in cut-cell transition formulation — shunz / detail
Fix for vera formatting check. Also a minor refactoring — shunz / detail
Minor refactoring — shunz / detail
Refactored ctau_{turb,init} fitting calculation — shunz / detail
Forgot to save this in the last commit... — shunz / detail
Unit-tested upwind advective flux in two-fIeld IBL pde class — shunz / detail
Minor commenting — shunz / detail
Minor refactoring — shunz / detail
minor refactoring — shunz / detail
Refactored dummy matching equations for fitted transition — shunz / detail
Forgot to commit this in the last pass — shunz / detail
Modified artificial amplification source term in fully turbulent elements. Pluse other minor refactoring — shunz / detail
Make sure scales are non-negative — shunz / detail
Enabled G=ln(ctau^0.5) as a primary unknown in place of ctau. It helps with nonlinear solution. — shunz / detail
Fixed unit tests — shunz / detail
Dumping matching variables for transition — shunz / detail
Refactored underrelaxation to guard against zero G. Added forced-transition subiteration output dump — shunz / detail
Turned off limiting on G variable. Made H validity check tighter — shunz / detail
Playing with a different form of lag equation in fitted transition approach. Not much luck though. So, as of now, using G as the primary unknown is already helpful — shunz / detail
Playing with point source for setting ctau_{Turb,init} — shunz / detail
Refactored forced transition point source for ctau jump — shunz / detail
playing with point source for ctau jump in free transition — shunz / detail
Tried implementing ctau jump condition via flux modification — shunz / detail
Got a captured transition result with sharp ctau jump at free transition front — shunz / detail
Added explicit instantiation — shunz / detail
Genearalized HubTrace boundary trace integrand by ridding of any PDE/BC dependence — shunz / detail
Generalized IBL solution DOF setter — shunz / detail
Implemented a different formulation for captured transition by splitting the amplification and lag equations — shunz / detail
Added instantiations — shunz / detail
Fixed amplification and lag source terms in new IBL PDE class — shunz / detail
Verified NACA0012 Re1e5 results against XFOIL (separated fully laminar BL) — shunz / detail
Add a lower limit to the modeled turbulent initial ctau — shunz / detail
Minor refactoring — shunz / detail
Fixed a bug in solution initialization — shunz / detail
Refactored masterState calculation from cumulation to assignment — shunz / detail
minor tidying — shunz / detail
Refactored smooth intermittency blending to allow for natural and forced transition as the same time — shunz / detail
Allowed for initializing p0 IBL solution from input file — shunz / detail
Added H upper limit in validity check — shunz / detail
SplitAmpLag working on NACA0012 Re 2e5 separation bubble — shunz / detail
Cosmetic edit — shunz / detail
Decoupled nt variables of BL from nt of the wake — shunz / detail
Converged p=0 solution on ne64 and n128 grids for Eppler 387 case — shunz / detail
minor cleanup — shunz / detail
renaming — shunz / detail
Refactored state validity check — shunz / detail
minor refactoring — shunz / detail
Added IO files for testing Eppler 387 airfoil — shunz / detail
Typo fix — shunz / detail
Tried PTC for IBLSplitAmpLag captured transition case — shunz / detail
Further simplified amplification equation at hubtrace — shunz / detail
Added grid and initial solution files — shunz / detail
minor cleanup — shunz / detail
added hessian to Joukowski solution — allmaras / detail
bug fix in Joukowski test — allmaras / detail
Minor edit — shunz / detail
Refactored a case — shunz / detail
Fixed calls to jacobianTranspose of daisy-chained algebraic equation set — shunz / detail
Cleanup — shunz / detail
minor refactoring — shunz / detail
minor edit to running case — shunz / detail
Refactored printed normed reisudals when line-search fails. — shunz / detail
Refactored running case — shunz / detail
Minor cleanup — shunz / detail
Minor fix — shunz / detail
Refactored uncoupled IBL case and added pyrite file — shunz / detail
Fixed HDG continuous implementation. Reverted to Var(delta, A, G) to not hacking scaling delta and A. Cleaned up some system tests — shunz / detail
Refactored two test cases — shunz / detail
Added Hk lower limit check when checking state validity for IBLUniField with correlation closures — shunz / detail
Added pyrite check file. Refactored test cases and enabled PTC on one of them. — shunz / detail
Fix pyrite check — shunz / detail
Fixed undefined variables — shunz / detail
Updated a pyrite file to be consistent with the latest settings in IBLUniField — shunz / detail
Deleted a redundant case — shunz / detail
added some commented out hack for fully turbulent BL simulation with IBLUniField — shunz / detail
Updated pyrite file — shunz / detail
Added exceptions as safe guards — shunz / detail
cosmetic refactoring — shunz / detail
cosmetic refactoring — shunz / detail
Added a pyrite file and changed test file name — shunz / detail
turned on set IBL dofs for p=0 for DsThG — shunz / detail
Dumped singular jacobian when UMFPACK finds it — shunz / detail
Refactored system test cases — shunz / detail
Using a less conservative initial CFL for PTC in a test case — shunz / detail
Refactored system test case — shunz / detail
Added some auxiliary functions for system test cases — shunz / detail
Added some debugging options — shunz / detail
Minor refactoring — shunz / detail
Simplified upwind flux in IBL to improve code reuse — shunz / detail
Commented out hacks. Added minor guards. Dumped matrix when UMFPACK linear solve fails. — shunz / detail
Laminar-turbulent blending works for Eppler 387 now. Turned on G limiting in updateFraction — shunz / detail
Cleaned up and refactored projection to Qauxi — shunz / detail
Removed redundant TopoDim templates following Hugh's recent updates — shunz / detail
playing with numerical flux and nt growth rate in laminar-turbulent blending formulation — shunz / detail
Playing with various grid-dependent laminar-turbulent blending strategies — shunz / detail
minor cleanup — shunz / detail
Use value instead of reference since equivalence is checked instead of identity — shunz / detail
Added output — shunz / detail
Tweaked LF flux dissipation coefficient a bit. Modified lag source term to prevent ctau to drop with ctau_Tinit after reaching its peak. Hacking grid dependent blending. Left system test case unchecked for the moment — shunz / detail
Added Hs derivatives with unit tests. Fixed typos in closure unit tests — shunz / detail
Abstracted Re_theta calculation — shunz / detail
Added Roe flux based on arithmetic average state — shunz / detail
Added class for setting qaux field from file — shunz / detail
Typo fix — shunz / detail
Minor refactoring — shunz / detail
Output blended IBL quantities — shunz / detail
Added an uncoupled IBL case — shunz / detail
Added qinif initialization to a shared file for setting up IBL case — shunz / detail
Using qinf initialization from a shared file — shunz / detail
Refactored Roe flux for IBL — shunz / detail
Added entropy fix — shunz / detail
Just hacking around. The hacky stuff are turned off — shunz / detail
Reformulated DG-IBL interface flux and finally fixed solution oscillation in transition cases. Saved other miscellaneous updates — shunz / detail
cosmetic changes (with hacks being commented out) — shunz / detail
Normalize KE equation by q^2 — shunz / detail
editted comments — shunz / detail
Use pde fluxAdvective function to calculate outflow flux at Hubtrace boundary — shunz / detail
cleaned up some hacks — shunz / detail
minor cleanup — shunz / detail
Accidentally messed up blended source term. Restore it now. — shunz / detail
Stashed some intermediate edits — shunz / detail
Fixed the numerical flux of IBL momentum equations to eliminate solution jumps and/or oscillations. Also cleaned up temporary hacks. — shunz / detail
Make intermittency length scale a parameter in the transition model. Cleaned up old hacks in in PDEIBLSplitAmpLag2D — shunz / detail
More cleanup — shunz / detail
minor edits — shunz / detail
Disable search for boost-cmake; otherwise, runs into conflicts with FindBoost. Need to resolve this if using boost-cmake in the future — shunz / detail
Minor cleanup following last merge commit — shunz / detail
Minor fixes to keep up with changes in the main branch — shunz / detail
Add pyrite check on E387 airfoil transition separation bubble case — shunz / detail
Update Solve2D_Coupled4x4_IBLSplitAmpLag_CorrelationClosure_CapturedTransition_PTC_btest.cpp — shunz / detail
Cleaned up the numerical flux options in Qauxi projection. All three numerical fluxes produce similar well-behaved results. Add a sandbox case — shunz / detail
working on advective field case... — cfrontin / detail
asdfasdf — cfrontin / detail
working on the advective field and it's broken LOL — cfrontin / detail
fix mpi dg — cfrontin / detail
trying to figure out idiosyncracy — cfrontin / detail
cont'd — cfrontin / detail
cont'd pt. ii — cfrontin / detail
name fix — cfrontin / detail
oopsie — cfrontin / detail
working on random field — cfrontin / detail
updated random fields, should be working but untested. — cfrontin / detail
unit tests for adjoint — arthuang / detail
fixes to compute AR etc. — hcarson / detail
Fix for EPIC 2D without geometry — galbramc / detail
jenkins fix, holdover code. — cfrontin / detail
adding block pivoting to ilu — arthuang / detail
a VMSDBR2 version of the DeltaWing Chain toy — hcarson / detail
Enable static condensation with MKL — galbramc / detail
Missed a static condensation step — galbramc / detail
Another MKL static condensation fix — galbramc / detail
Relaxed tolerance — galbramc / detail
a VMSDBR2 Double BL, also lining up the 3 so that they are the same. HOWEVER, Seems to be something very wrong with plain VMSD, the adapt looks crap and the error is enormous.... — hcarson / detail
Updates for latest refine — galbramc / detail
urop fix? — cfrontin / detail
jenkins fix, odds and ends. — cfrontin / detail
added 2D+T VMSD AD case. — cfrontin / detail
minor edit — shunz / detail
refactored the new PDE IBL class and added unit tests — shunz / detail
fixed LF flux — shunz / detail
Relocated blended intermittency to PDE class. Added unit tests. — shunz / detail
Added unit tests to VarInterpret — shunz / detail
Fixed intermittency usage in auxi equation — shunz / detail
refactored intermittency calculation calling signature across different variants of IBL formulations — shunz / detail
Fixed type — shunz / detail
Refactored unit tests to keep up with updates in the thickness class — shunz / detail
Cleaned up manifold interface integrand implementation. Minor type corrections for unit tests involving Surreal types. — shunz / detail
Fixed ping tests by adjusting the reference solution and step size — shunz / detail
Refactored PDEIBLSplitAmgLag2D default flux and ctau_min. Added pyrite check files — shunz / detail
updated pyrite files — shunz / detail
Refactored IBL solution file reader. Cleaned up system tests for various IBL formulations — shunz / detail
Removed IO file clutter — shunz / detail
Added variable data constructors. Fixed types. File cleanup — shunz / detail
Fixed IBL solution reader usage — shunz / detail
Recovered a system test on IBLUniField — shunz / detail
Cleaned up system tests — shunz / detail
Fixed IBL solution reader usage — shunz / detail
Fixed duplicate symbols by inline. Added a missing pyrite check file — shunz / detail
Relaxed pyrite tolerance. Fixed unit tests for IBL soluton file reader — shunz / detail
Suppressed file output for Jenkins — shunz / detail
Suppressed one more file output for Jenkins. — shunz / detail
Fixed unused variable — shunz / detail
Relaxed pyrite tolerances for gnu — shunz / detail
Subtle typo in pyrite filename — shunz / detail
Relaxed tolerances for intel compilers — shunz / detail
Relaxed pyrite tolerance. Added explicit instantiation to fix linker error — shunz / detail
Relaxed tolerance. Fixed timeout on Jenkins — shunz / detail
Relaxed pyrite tolerances — shunz / detail
relaxed tolerance on d/dxdy test — allmaras / detail
Replace Joukowski q1 grid — galbramc / detail
coverage improvement — cfrontin / detail
hotfix — cfrontin / detail
quick fix — cfrontin / detail
Attempt to use parallel MKL (does not work yet). Other small cleanups. — galbramc / detail
Added cartesian table lookup for PorusMedia SPE calculations — galbramc / detail
Use atlas blas on rhel7 — galbramc / detail
2d+t hex solve patch. — cfrontin / detail
belated nomenclature fix — cfrontin / detail
Consistent delete — galbramc / detail
VMSDBR2 3D+T additions. — cfrontin / detail
added squarechannel vmsd br2 changes — cfrontin / detail
General PETSc verson on macOZ for jenkins — galbramc / detail
Suppress tetgen CMake warning. Relax tolerance for macOS — galbramc / detail
Allow MKL as BLAS library. Update macOS PETSc. Fix tolerance. — galbramc / detail
Add option to dump per rank matrix market file from PETSc — galbramc / detail
1st crack at SPE10 test case; compiles but errors out when run; — allmaras / detail
unit tests for PorosityModel_CartTable — allmaras / detail
unit tests for Porosivity and Permeability — allmaras / detail
Fix for PETSc matrix market dump — galbramc / detail
bug fixes in 2-phase porous flow classes/tests; added CartTable unit tests for PDETwoPhase2D — allmaras / detail
updated SPE10 test case to include lookup poro/perm tables; BCs now complaining about CartTable — allmaras / detail
reverted to original functionality on fluxAdvectiveUpwind: no-op rather than developer exception; — allmaras / detail
added "#include <fstream>" in lookup table tests — allmaras / detail
SPE10 testcase: added avro include files and check on SANS_AVRO — allmaras / detail
cppcheck fixes — galbramc / detail
Jenkins updates — galbramc / detail
Added Kyle Anderson k-ordering to PETSc — galbramc / detail
Another jenkins update — galbramc / detail
Fix warnings — galbramc / detail
vmsd sip -> vmsd br2 in sandbox — cfrontin / detail
Update CMake build to Nlopt 2.6.1 — galbramc / detail
SPE10 testcase: added needed instantiations for BC parameters, algebraic eq set, error estimates — allmaras / detail
more vmsd sip -> vmsd br2 in sandbox — cfrontin / detail
Fix k-ordering — galbramc / detail
Fix for k-ordering with BAIJ PETSc matrices — galbramc / detail
fixed typo in comments; no change in functionality — allmaras / detail
SPE10 testcase: fixed typos/bugs in instantiations — allmaras / detail
SPE10: changed avro check to BOOST_FAIL, so code always compiles even if USE_AVRO not defined — allmaras / detail
Implemented refine 2D API interface — galbramc / detail
SPE10: generalized output functional to sum over a vector of outflow wells — allmaras / detail
SPE10: added multiple wells to output functional — allmaras / detail
SPE10: trying to achieve successful compile when SANS_AVRO not defined — allmaras / detail
SPE10: added checks on porosity & permeability table lookups — allmaras / detail
Upgrade ccache version — galbramc / detail
vmsd -> sip again — cfrontin / detail
2D refine updates to swork with CAD. Not done yet. — galbramc / detail
Fix compile error — galbramc / detail
Suppress some cppcheck warnings — galbramc / detail
Tweak for jenkins Commit script — galbramc / detail
less sharp exact soln, BR2 not SIP — cfrontin / detail
and output fix — cfrontin / detail
eliminated option to use single/scalar source to initialize OutputTwoPhase2D_Flowrate; — allmaras / detail
added test for 1x1 constant lookup table — allmaras / detail
typo fix in output functional source class name (SourceClass -> SourceOutflowClass) — allmaras / detail
another intel suppression for valgrind — galbramc / detail
cppcheck suppression — galbramc / detail
Added a scaling factor to PermeabilityModel2D_CartTable to fix units in SPE10 case. Added rock compressibility to PorosityModel_CartTable, and updated unit tests. Added phi, Kxx, and Kyy as derived quantities to PDETwoPhase2D for visualization. Added table look-up files with homogeneous data for SPE10. — savithru / detail
Fixed unused variable warning — savithru / detail
forcing function adjustment... not improved :( — cfrontin / detail
Update for latest refine — galbramc / detail
SingularException destructor instantiation — galbramc / detail
Rename BCEulermitAVDiffusion to BCEulermitAVSensor since the name makes more sense — blsc / detail
First pass at including artificial viscosity model from Holst (2020) — blsc / detail
GCC9 caught some unitialized data — blsc / detail
A few bugs — blsc / detail
Unit tests and associated bug fixes — blsc / detail
Fix library ordering for HSM — galbramc / detail
Updated gcc warning regex — galbramc / detail
Increase timout times — galbramc / detail
Slight correction to refine unit test — galbramc / detail
Updates for refine incliding 2D triangle hack. Still need help from Mike. — galbramc / detail
Dissable refine 2D test — galbramc / detail
Refine now works in 2D — galbramc / detail
Add restart interface for refine — galbramc / detail
Increase timeour for refine2D tests — galbramc / detail
Use MPI_sleep for avro execution — galbramc / detail
Only write EGADS file from one processor and reduce iterations in refine2D_btest — galbramc / detail
Add missing include — galbramc / detail
Relax refine timie a bit more — galbramc / detail
Add missing link library — galbramc / detail
refine2D with EGADS still does not quite work. — galbramc / detail
Fix for parallel 2D refine — galbramc / detail
One more refine fix — galbramc / detail
Only remove files on the rank 0 processor — galbramc / detail
Warning fixes — galbramc / detail
Fix up Box Tet WakeCut for adjoint — galbramc / detail
Added Ismail-Roe entropy conservative flux (with optional entropy fix based on Harten) in 2D. Unit tested to ensure: primal and entropy consistency for the entropy conservative formulation, primal consistency and entropy dissipation for version with entropy fix. Extension to RANSSA NOT implemented. — blsc / detail
Added header: src/pde/NS/Roe.h to src/pde/NS/IsmailRoe.h to it can access datatype: RoeEntropyFix — blsc / detail
Typo fix in enum RoeEntropyFix: eIsmailRoeEntopyNeutral -> eIsmailRoeEntropyNeutral — blsc / detail
Added SPE10 permeability datasets with reduced contrast ratios — savithru / detail
Updated quarter five spot case to use avro — savithru / detail
lorenz building, not converging. need unit tests. — blsc / detail
in progress... — blsc / detail
lorenz in progress, not converging, seems to need stabilization. — blsc / detail
working on vmsd. — blsc / detail
added DG, broken. now VMSD and DGBR2 are both broken and CG is unstable :) — blsc / detail
more of the same. — blsc / detail
made some fixes, fem of lorenz seems to be working (w/ 4M elements...) — blsc / detail
trying to figure out what's wrong — blsc / detail
unit test addition.. — blsc / detail
hmm looking for valgrid shit now. — blsc / detail
added exact solution for alpha=0 case. — blsc / detail
configured for convergence test, convergent. — blsc / detail
output tricks — blsc / detail
working on homotopy pde — blsc / detail
for marshall — blsc / detail
Some progress for BCHomotopy — blsc / detail
homotopy in progress (still) — blsc / detail
on the way to a block 2x2 version of htc... — blsc / detail
slow but steady. — blsc / detail
on the curve between the easy solution and the hard one — blsc / detail
bob loblaw law blog — blsc / detail
homotopy might be working might be leaking might be a figment of my imagination. — blsc / detail
fieldbase uninitialized data fix. — blsc / detail
homotopy running but breaking for chaos :( — blsc / detail
added dumps — blsc / detail
fixed homotopy bug i think. — blsc / detail
added adaptive stepping to homotopy. — blsc / detail
ready for ben — blsc / detail
state of the art — blsc / detail
small changes. — blsc / detail
Removed PDE template from BCLorenz since it was no longer needed. Generalized the new homotopy integrand so it can be applied to Real and VectorS PDE::ArrayQ types. Updates required adding move construction and move assignment operator to VectorBlock_2 to prevent warnings about using implicit constructors under g++9. Propogated the required changes to unit test and sandbox cases. — blsc / detail
Statically condensed VMSD with homotopy: Updated the jacobian functions in the the HTC algebraic equation set, added logic for static condensation to Block 2x2 matrix interface with UMFPACK, and also had to expose the types of the vectors in VectorBlock_2. Also updated the Homotopy logic to be more robust, which mostly consists of making sure steps taken in the predictor phase are valid. — blsc / detail
Added ability to pass q and qp into source term individually for VMSDBR2. This is needed for some of the resolution sensors I am experimenting with for shock capturing. This required an additional source function to be added to PDEs that takes q, qp, gradq, and gradqp. Currently, this new function forwards (q+qp) and (gradq+gradqp) to the original source function. Unit tests have been added to test consistency of this new source term. — blsc / detail
Added new boundary condition: BCTypeFullStateRadialInflow_mitState. This is a FullState_mitState style boundary condition, except velocity magnitude is specified. The direction is then calculated as radially outward from an origin at (0,0). — blsc / detail
Added PDESourceOnly2D which implements a pde q - a = 0. This is for use as the auxiliary equation for Homotopy continuation. Unit tests added to applying this PDE to adevction diffusion, Euler and Euler with artificial diffusion. Also found that the jacobianMasterState and jacobianFluxAdvectveTime functions were reversed for the sensor PDE. This has been fixed and unit tests updated. — blsc / detail
Setting up a bump in a subsonic inviscid flow. Now verbose enables / disables all console output of the halving linesearch. Also added some extra function to PDEEuler2D to forward calls that have params. — blsc / detail
Added sourceCoarse and sourceFine function calls to VMSDBR2, which are source terms weighted against the coarse and fine space test functions respectively. For the most part these forward calls to the source function in the PDE. These are required because VMSD does not have a unique solution for the PDE q - a = 0 if a is a constant. Since this is the case in the SourceOnly PDE, that PDE now solves (\bar{q} - a) = 0, and q' = 0. — blsc / detail
Setting up RadialShock problem using VMSDBR2 and Homotopy. This required instantiating objects relating to the Block 2x2 linear algebra for PDEs of dimension 5. It also required adding the new source functions to the Sensor PDE. — blsc / detail
Renamed eLaplaceViscosity to eLaplaceViscosityEnthalpy in enum EulerArtViscosity. This is a more descriptive name for this option: artificial diffusion is applied to the gradient of total enthalpy (not total internal energy as a pure Laplacian operator would suggest). Now the option eLaplaceViscosityEnergy can be added to the enum EulerArtViscosity to describe the artificial diffusion being applied to the conservation variables. — blsc / detail
Upgraded to latest AFLR — galbramc / detail
Added eLaplaceViscosityEnergy to enum EulerArtViscosity. This applies a Laplacian operator to the conservation variable gradient (i.e. energy gradient not enthalpy gradient). System tests have been added to ensure that the calculation is correct for Euler2D and RANSSA2D PDEs. — blsc / detail
Fixed two bugs highlighted by Jenkins. 1) PDELorenz was using abs on a Real. 2) Several lines in SolutionFunction_Euler2D.h were too long. — blsc / detail
Look for Real Time library for AFLR — galbramc / detail
Fix for last commit — galbramc / detail
A few AFLR fixes — galbramc / detail
Previous commits overwrote some updates to the PETSc interface, so had to revert to commit 8fa5bcb008f4c19ec223d6ebfa628f6d4d9354cd for those files. Also updated files that failed vera checks. — blsc / detail
Instantiations for Block2x2 systems for a PDE of 5 equations were missing from MKL. Also, the version of UMFPack on Ubuntu 12.04 does not support the new exception types, so have reverted src/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver.cpp back to commit 45d3cd53036a51bccf943d9c5097544bd220d8f8 — blsc / detail
Relaxed tolerances on JacobianCell_VMSD_BR2_AD_btest for intel. Added #ifdef protection on the new UMFPACk error flags for older versions of UMFPack (pre 5.5) — blsc / detail
Updated BuildBoost to Boost 1.72 — galbramc / detail
Updated AFLR to 16.30.11. Lots of cppcheck fixes. — galbramc / detail
Add missing include — galbramc / detail
Fixes for AFLR4 farfield mesh generation — galbramc / detail
A few nightly fixes — galbramc / detail
Add continuousGlobalMap for LIP solvers — galbramc / detail
Fix the last fix — galbramc / detail
Use CMake python when building boost — galbramc / detail
Fix for gold linker with MKL — galbramc / detail
Some more nightly fixes — galbramc / detail
One more nightly fix — galbramc / detail
CMake fixes for CentOS 8 — galbramc / detail
Relax timing some more — galbramc / detail
Correction for finding boost python — galbramc / detail
Some more time relaxation — galbramc / detail
Look for vera++ on CentOS 8 as well — galbramc / detail
speed up a system test by using a better initial solution — shunz / detail
Boost numpy was added with 1.65 — galbramc / detail
remove some system tests that are no longer essential — shunz / detail
remove more non-essential system test — shunz / detail
remove more non-essential system test — shunz / detail
Check if NLOPT direcfory exists on jenkins node — galbramc / detail
Fix array out of bounds for refine. Fix parallel make for jenkins. — galbramc / detail

#258 (Apr 14, 2020, 8:16:52 AM)

Added variable interpreter for primary unknowns = {delta*, theta, G} — shunz / detail
Refactored IBL profile type identifier — shunz / detail
Added unit tests to VarInterpret — shunz / detail
Fixed unit test — shunz / detail
Added a new class for calculating thicknesses and coeffcients, along with unit tests. — shunz / detail
Typo fixes — shunz / detail
Refactored PDEIBLUniField to use genealized thicknesses/coeffcients calculation routines. Verified uncoupled IBL run with airfoil only — shunz / detail
Refactoring to get coupled IBLUniField to work without transition. Caveat: pyrite check is fine with delta & A variables, but mismatches G (maybe numerical precision issue? to be eamined) — shunz / detail
Cleaned up obsolete stuff — shunz / detail
Cleanup — shunz / detail
Renaming/cleanup — shunz / detail
Preliminary implementation of correlation closure — shunz / detail
Minor refactoring — shunz / detail
First run of correlation-closure IBL on an uncoupled airfoil-only case, compared reasonably well with profile-closure results — shunz / detail
minor edit — shunz / detail
Added turbulent closure from MSES paper. Ran coupled IBL on airfoil+wake configuration, comparing reasonably well with IBL based on profile closures — shunz / detail
Distinguished H from Hk (kinematic). — shunz / detail
Reduced code repetition — shunz / detail
Added some XFOIL closures — shunz / detail
Added more XFOIL closures — shunz / detail
Typo fixes — shunz / detail
Refactored Uslip calculation — shunz / detail
Fixed a typo in xfoil laminar BL closure — shunz / detail
Added pyrite check for XFOIL laminar BL closure — shunz / detail
Recovered the correct double dissipation for wake. Added pyrite files — shunz / detail
Added output dumping functions for correlation-closure IBL — shunz / detail
Refactored output function and added a utility function — shunz / detail
Added XFOIL amplification growth rate closure, which is almost identical to IBL — shunz / detail
Modified lag equation and CDiss closure a bit. — shunz / detail
With modified lag equation, laminarBL+turbulentWake results matches XFOIL very closely — shunz / detail
Added captured transition test case with pyrite file for correlation-based IBL — shunz / detail
Fixed an innocuous bug — shunz / detail
Re-enabled LF flux — shunz / detail
Added machinery for loading up IBL solution from input file — shunz / detail
Make LF flux a default for IBL — shunz / detail
Refactored blended intermittency calculation for correlation-based closure — shunz / detail
Do no apply blending for wake — shunz / detail
Switched to generalized thickness/coeffcient calculation for duplicate-field IBL as well. Verified uncoupled airfoil case with full upwind — shunz / detail
Bug fix — shunz / detail
Verified coupled case with laminarBL+turbulentWake — shunz / detail
Minor refactoring — shunz / detail
minor cleanup — shunz / detail
Added instantiation and fixed transition test cases — shunz / detail
Added a missing method — shunz / detail
Added a pyrite check for NACA0012 case (with flow separation) — shunz / detail
Added a different set of initial solution. Allowed for laminar BL to turn turbulent during transient state — shunz / detail
Added new IBL variable type — shunz / detail
Added unit tests and fixed bugs — shunz / detail
Generalized dummy equations in duplicate-field IBL pde class — shunz / detail
Follow-up fixes for test cases affected by earlier commits — shunz / detail
Refactored solution initialization — shunz / detail
Enabled correlation-based two-field IBL formulation. Added test case of coupled IBL with lamiBL+turbWake and corresponding pyrite file. — shunz / detail
Refactored updateFraction in PDEIBL and also fixed the sign in solution update — shunz / detail
Generalized cut-cell machinery to handle two different sets of IBL primary unknowns — shunz / detail
Added pyrite check — shunz / detail
Added comments — shunz / detail
Minor refactoring. Added missing initial solution file — shunz / detail
Intermediate commit — shunz / detail
Cleaned up test cases — shunz / detail
Refactored updateFraction — shunz / detail
Added a pyrite check — shunz / detail
Relaxed tolerance — shunz / detail
Refactoring updateFraction. Added an expedient guard against too small Hk — shunz / detail
Added underrelaxation — shunz / detail
Added underrelaxation-related stuff — shunz / detail
Cosmetic edtis — shunz / detail
Verified pyrite check for fitted-transition IBL on NACA0012 Re=1e5 massively separated laminar BL — shunz / detail
Added Cf replacement for turbulent BL with too small Retheta — shunz / detail
Added a pyrite file — shunz / detail
Added a pyrite file — shunz / detail
BC refactoring and unit test fix — shunz / detail
Refactored BC and added unit tests — shunz / detail
Improved coverage by removing redundant safety guards — shunz / detail
Just renaming — shunz / detail
Refactoring and unit testing — shunz / detail
Fixed a bug in Cf correlation. Added unit test — shunz / detail
Type fix — shunz / detail
Unit tested correlations from XFOIL. — shunz / detail
Refactored amplification growth correlation calculation for speedup --> changed the floating-point arithmetic a bit Added unit tests. — shunz / detail
added comments — shunz / detail
Cleanup — shunz / detail
Cleanup — shunz / detail
Dump additional output files for examination — shunz / detail
Unit test fixes — shunz / detail
More unit test fixes — shunz / detail
Unit test fix — shunz / detail
Refactored blended intermittency calculation and added unit tests — shunz / detail
Refactored updateFraction and added unit tests — shunz / detail
minor fixes — shunz / detail
matching old system pyrite test: coupled IBLUniField profile-closure lamiBL+turbWake — shunz / detail
Changed initial solution guess — shunz / detail
Bug fix. Equality operator is sensitive to type: std::string vs its reference. — shunz / detail
Minor refactoring — shunz / detail
Added comments — shunz / detail
Refactored unit tests — shunz / detail
Refactored source terms and added unit tests for PDEIBL2D — shunz / detail
Refactored ctau_{turb,init}. Unit tested turbulent sub-cell source term for amplification eqn in cut-cell transition formulation — shunz / detail
Fix for vera formatting check. Also a minor refactoring — shunz / detail
Minor refactoring — shunz / detail
Refactored ctau_{turb,init} fitting calculation — shunz / detail
Forgot to save this in the last commit... — shunz / detail
Unit-tested upwind advective flux in two-fIeld IBL pde class — shunz / detail
Minor commenting — shunz / detail
Minor refactoring — shunz / detail
minor refactoring — shunz / detail
Refactored dummy matching equations for fitted transition — shunz / detail
Forgot to commit this in the last pass — shunz / detail
Modified artificial amplification source term in fully turbulent elements. Pluse other minor refactoring — shunz / detail
Make sure scales are non-negative — shunz / detail
Enabled G=ln(ctau^0.5) as a primary unknown in place of ctau. It helps with nonlinear solution. — shunz / detail
Fixed unit tests — shunz / detail
Dumping matching variables for transition — shunz / detail
Refactored underrelaxation to guard against zero G. Added forced-transition subiteration output dump — shunz / detail
Turned off limiting on G variable. Made H validity check tighter — shunz / detail
Playing with a different form of lag equation in fitted transition approach. Not much luck though. So, as of now, using G as the primary unknown is already helpful — shunz / detail
Playing with point source for setting ctau_{Turb,init} — shunz / detail
Refactored forced transition point source for ctau jump — shunz / detail
playing with point source for ctau jump in free transition — shunz / detail
Tried implementing ctau jump condition via flux modification — shunz / detail
Got a captured transition result with sharp ctau jump at free transition front — shunz / detail
Added explicit instantiation — shunz / detail
Genearalized HubTrace boundary trace integrand by ridding of any PDE/BC dependence — shunz / detail
Generalized IBL solution DOF setter — shunz / detail
Implemented a different formulation for captured transition by splitting the amplification and lag equations — shunz / detail
Added instantiations — shunz / detail
Fixed amplification and lag source terms in new IBL PDE class — shunz / detail
Verified NACA0012 Re1e5 results against XFOIL (separated fully laminar BL) — shunz / detail
Add a lower limit to the modeled turbulent initial ctau — shunz / detail
Minor refactoring — shunz / detail
Fixed a bug in solution initialization — shunz / detail
Refactored masterState calculation from cumulation to assignment — shunz / detail
minor tidying — shunz / detail
Refactored smooth intermittency blending to allow for natural and forced transition as the same time — shunz / detail
Allowed for initializing p0 IBL solution from input file — shunz / detail
Added H upper limit in validity check — shunz / detail
SplitAmpLag working on NACA0012 Re 2e5 separation bubble — shunz / detail
Cosmetic edit — shunz / detail
Decoupled nt variables of BL from nt of the wake — shunz / detail
Converged p=0 solution on ne64 and n128 grids for Eppler 387 case — shunz / detail
minor cleanup — shunz / detail
renaming — shunz / detail
Refactored state validity check — shunz / detail
minor refactoring — shunz / detail
Added IO files for testing Eppler 387 airfoil — shunz / detail
Typo fix — shunz / detail
Tried PTC for IBLSplitAmpLag captured transition case — shunz / detail
Further simplified amplification equation at hubtrace — shunz / detail
Added grid and initial solution files — shunz / detail
minor cleanup — shunz / detail
added hessian to Joukowski solution — allmaras / detail
bug fix in Joukowski test — allmaras / detail
Minor edit — shunz / detail
Refactored a case — shunz / detail
Fixed calls to jacobianTranspose of daisy-chained algebraic equation set — shunz / detail
Cleanup — shunz / detail
minor refactoring — shunz / detail
minor edit to running case — shunz / detail
Refactored printed normed reisudals when line-search fails. — shunz / detail
Refactored running case — shunz / detail
Minor cleanup — shunz / detail
Minor fix — shunz / detail
Refactored uncoupled IBL case and added pyrite file — shunz / detail
Fixed HDG continuous implementation. Reverted to Var(delta, A, G) to not hacking scaling delta and A. Cleaned up some system tests — shunz / detail
Refactored two test cases — shunz / detail
Added Hk lower limit check when checking state validity for IBLUniField with correlation closures — shunz / detail
Added pyrite check file. Refactored test cases and enabled PTC on one of them. — shunz / detail
Fix pyrite check — shunz / detail
Fixed undefined variables — shunz / detail
Updated a pyrite file to be consistent with the latest settings in IBLUniField — shunz / detail
Deleted a redundant case — shunz / detail
added some commented out hack for fully turbulent BL simulation with IBLUniField — shunz / detail
Updated pyrite file — shunz / detail
Added exceptions as safe guards — shunz / detail
cosmetic refactoring — shunz / detail
cosmetic refactoring — shunz / detail
Added a pyrite file and changed test file name — shunz / detail
turned on set IBL dofs for p=0 for DsThG — shunz / detail
Dumped singular jacobian when UMFPACK finds it — shunz / detail
Refactored system test cases — shunz / detail
Using a less conservative initial CFL for PTC in a test case — shunz / detail
Refactored system test case — shunz / detail
Added some auxiliary functions for system test cases — shunz / detail
Added some debugging options — shunz / detail
Minor refactoring — shunz / detail
Simplified upwind flux in IBL to improve code reuse — shunz / detail
Commented out hacks. Added minor guards. Dumped matrix when UMFPACK linear solve fails. — shunz / detail
Laminar-turbulent blending works for Eppler 387 now. Turned on G limiting in updateFraction — shunz / detail
Cleaned up and refactored projection to Qauxi — shunz / detail
Removed redundant TopoDim templates following Hugh's recent updates — shunz / detail
playing with numerical flux and nt growth rate in laminar-turbulent blending formulation — shunz / detail
Playing with various grid-dependent laminar-turbulent blending strategies — shunz / detail
minor cleanup — shunz / detail
Use value instead of reference since equivalence is checked instead of identity — shunz / detail
Added output — shunz / detail
Tweaked LF flux dissipation coefficient a bit. Modified lag source term to prevent ctau to drop with ctau_Tinit after reaching its peak. Hacking grid dependent blending. Left system test case unchecked for the moment — shunz / detail
Added Hs derivatives with unit tests. Fixed typos in closure unit tests — shunz / detail
Abstracted Re_theta calculation — shunz / detail
Added Roe flux based on arithmetic average state — shunz / detail
Added class for setting qaux field from file — shunz / detail
Typo fix — shunz / detail
Minor refactoring — shunz / detail
Output blended IBL quantities — shunz / detail
Added an uncoupled IBL case — shunz / detail
Added qinif initialization to a shared file for setting up IBL case — shunz / detail
Using qinf initialization from a shared file — shunz / detail
Refactored Roe flux for IBL — shunz / detail
Added entropy fix — shunz / detail
Just hacking around. The hacky stuff are turned off — shunz / detail
Reformulated DG-IBL interface flux and finally fixed solution oscillation in transition cases. Saved other miscellaneous updates — shunz / detail
cosmetic changes (with hacks being commented out) — shunz / detail
Normalize KE equation by q^2 — shunz / detail
editted comments — shunz / detail
Use pde fluxAdvective function to calculate outflow flux at Hubtrace boundary — shunz / detail
cleaned up some hacks — shunz / detail
minor cleanup — shunz / detail
Accidentally messed up blended source term. Restore it now. — shunz / detail
Stashed some intermediate edits — shunz / detail
Fixed the numerical flux of IBL momentum equations to eliminate solution jumps and/or oscillations. Also cleaned up temporary hacks. — shunz / detail
Make intermittency length scale a parameter in the transition model. Cleaned up old hacks in in PDEIBLSplitAmpLag2D — shunz / detail
More cleanup — shunz / detail
minor edits — shunz / detail
Disable search for boost-cmake; otherwise, runs into conflicts with FindBoost. Need to resolve this if using boost-cmake in the future — shunz / detail
Minor cleanup following last merge commit — shunz / detail
Minor fixes to keep up with changes in the main branch — shunz / detail
Add pyrite check on E387 airfoil transition separation bubble case — shunz / detail
Update Solve2D_Coupled4x4_IBLSplitAmpLag_CorrelationClosure_CapturedTransition_PTC_btest.cpp — shunz / detail
Cleaned up the numerical flux options in Qauxi projection. All three numerical fluxes produce similar well-behaved results. Add a sandbox case — shunz / detail
working on advective field case... — cfrontin / detail
asdfasdf — cfrontin / detail
working on the advective field and it's broken LOL — cfrontin / detail
fix mpi dg — cfrontin / detail
trying to figure out idiosyncracy — cfrontin / detail
cont'd — cfrontin / detail
cont'd pt. ii — cfrontin / detail
name fix — cfrontin / detail
oopsie — cfrontin / detail
working on random field — cfrontin / detail
updated random fields, should be working but untested. — cfrontin / detail
unit tests for adjoint — arthuang / detail
fixes to compute AR etc. — hcarson / detail
Fix for EPIC 2D without geometry — galbramc / detail
jenkins fix, holdover code. — cfrontin / detail
adding block pivoting to ilu — arthuang / detail
a VMSDBR2 version of the DeltaWing Chain toy — hcarson / detail
Enable static condensation with MKL — galbramc / detail
Missed a static condensation step — galbramc / detail
Another MKL static condensation fix — galbramc / detail
Relaxed tolerance — galbramc / detail
a VMSDBR2 Double BL, also lining up the 3 so that they are the same. HOWEVER, Seems to be something very wrong with plain VMSD, the adapt looks crap and the error is enormous.... — hcarson / detail
Updates for latest refine — galbramc / detail
urop fix? — cfrontin / detail
jenkins fix, odds and ends. — cfrontin / detail
added 2D+T VMSD AD case. — cfrontin / detail
minor edit — shunz / detail
refactored the new PDE IBL class and added unit tests — shunz / detail
fixed LF flux — shunz / detail
Relocated blended intermittency to PDE class. Added unit tests. — shunz / detail
Added unit tests to VarInterpret — shunz / detail
Fixed intermittency usage in auxi equation — shunz / detail
refactored intermittency calculation calling signature across different variants of IBL formulations — shunz / detail
Fixed type — shunz / detail
Refactored unit tests to keep up with updates in the thickness class — shunz / detail
Cleaned up manifold interface integrand implementation. Minor type corrections for unit tests involving Surreal types. — shunz / detail
Fixed ping tests by adjusting the reference solution and step size — shunz / detail
Refactored PDEIBLSplitAmgLag2D default flux and ctau_min. Added pyrite check files — shunz / detail
updated pyrite files — shunz / detail
Refactored IBL solution file reader. Cleaned up system tests for various IBL formulations — shunz / detail
Removed IO file clutter — shunz / detail
Added variable data constructors. Fixed types. File cleanup — shunz / detail
Fixed IBL solution reader usage — shunz / detail
Recovered a system test on IBLUniField — shunz / detail
Cleaned up system tests — shunz / detail
Fixed IBL solution reader usage — shunz / detail
Fixed duplicate symbols by inline. Added a missing pyrite check file — shunz / detail
Relaxed pyrite tolerance. Fixed unit tests for IBL soluton file reader — shunz / detail
Suppressed file output for Jenkins — shunz / detail
Suppressed one more file output for Jenkins. — shunz / detail
Fixed unused variable — shunz / detail
Relaxed pyrite tolerances for gnu — shunz / detail
Subtle typo in pyrite filename — shunz / detail
Relaxed tolerances for intel compilers — shunz / detail
Relaxed pyrite tolerance. Added explicit instantiation to fix linker error — shunz / detail
Relaxed tolerance. Fixed timeout on Jenkins — shunz / detail
Relaxed pyrite tolerances — shunz / detail
relaxed tolerance on d/dxdy test — allmaras / detail
Replace Joukowski q1 grid — galbramc / detail
coverage improvement — cfrontin / detail
hotfix — cfrontin / detail
quick fix — cfrontin / detail
Attempt to use parallel MKL (does not work yet). Other small cleanups. — galbramc / detail
Added cartesian table lookup for PorusMedia SPE calculations — galbramc / detail
Use atlas blas on rhel7 — galbramc / detail
2d+t hex solve patch. — cfrontin / detail
belated nomenclature fix — cfrontin / detail
Consistent delete — galbramc / detail
VMSDBR2 3D+T additions. — cfrontin / detail
added squarechannel vmsd br2 changes — cfrontin / detail
General PETSc verson on macOZ for jenkins — galbramc / detail
Suppress tetgen CMake warning. Relax tolerance for macOS — galbramc / detail
Allow MKL as BLAS library. Update macOS PETSc. Fix tolerance. — galbramc / detail
Add option to dump per rank matrix market file from PETSc — galbramc / detail
1st crack at SPE10 test case; compiles but errors out when run; — allmaras / detail
unit tests for PorosityModel_CartTable — allmaras / detail
unit tests for Porosivity and Permeability — allmaras / detail
Fix for PETSc matrix market dump — galbramc / detail
bug fixes in 2-phase porous flow classes/tests; added CartTable unit tests for PDETwoPhase2D — allmaras / detail
updated SPE10 test case to include lookup poro/perm tables; BCs now complaining about CartTable — allmaras / detail
reverted to original functionality on fluxAdvectiveUpwind: no-op rather than developer exception; — allmaras / detail
added "#include <fstream>" in lookup table tests — allmaras / detail
SPE10 testcase: added avro include files and check on SANS_AVRO — allmaras / detail
cppcheck fixes — galbramc / detail
Jenkins updates — galbramc / detail
Added Kyle Anderson k-ordering to PETSc — galbramc / detail
Another jenkins update — galbramc / detail
Fix warnings — galbramc / detail
vmsd sip -> vmsd br2 in sandbox — cfrontin / detail
Update CMake build to Nlopt 2.6.1 — galbramc / detail
SPE10 testcase: added needed instantiations for BC parameters, algebraic eq set, error estimates — allmaras / detail
more vmsd sip -> vmsd br2 in sandbox — cfrontin / detail
Fix k-ordering — galbramc / detail
Fix for k-ordering with BAIJ PETSc matrices — galbramc / detail
fixed typo in comments; no change in functionality — allmaras / detail
SPE10 testcase: fixed typos/bugs in instantiations — allmaras / detail
SPE10: changed avro check to BOOST_FAIL, so code always compiles even if USE_AVRO not defined — allmaras / detail
Implemented refine 2D API interface — galbramc / detail
SPE10: generalized output functional to sum over a vector of outflow wells — allmaras / detail
SPE10: added multiple wells to output functional — allmaras / detail
SPE10: trying to achieve successful compile when SANS_AVRO not defined — allmaras / detail
SPE10: added checks on porosity & permeability table lookups — allmaras / detail
Upgrade ccache version — galbramc / detail
vmsd -> sip again — cfrontin / detail
2D refine updates to swork with CAD. Not done yet. — galbramc / detail
Fix compile error — galbramc / detail
Suppress some cppcheck warnings — galbramc / detail
Tweak for jenkins Commit script — galbramc / detail
less sharp exact soln, BR2 not SIP — cfrontin / detail
and output fix — cfrontin / detail
eliminated option to use single/scalar source to initialize OutputTwoPhase2D_Flowrate; — allmaras / detail
added test for 1x1 constant lookup table — allmaras / detail
typo fix in output functional source class name (SourceClass -> SourceOutflowClass) — allmaras / detail
another intel suppression for valgrind — galbramc / detail
cppcheck suppression — galbramc / detail
Added a scaling factor to PermeabilityModel2D_CartTable to fix units in SPE10 case. Added rock compressibility to PorosityModel_CartTable, and updated unit tests. Added phi, Kxx, and Kyy as derived quantities to PDETwoPhase2D for visualization. Added table look-up files with homogeneous data for SPE10. — savithru / detail
Fixed unused variable warning — savithru / detail
forcing function adjustment... not improved :( — cfrontin / detail
Update for latest refine — galbramc / detail
SingularException destructor instantiation — galbramc / detail
Rename BCEulermitAVDiffusion to BCEulermitAVSensor since the name makes more sense — blsc / detail
First pass at including artificial viscosity model from Holst (2020) — blsc / detail
GCC9 caught some unitialized data — blsc / detail
A few bugs — blsc / detail
Unit tests and associated bug fixes — blsc / detail
Fix library ordering for HSM — galbramc / detail
Updated gcc warning regex — galbramc / detail
Increase timout times — galbramc / detail
Slight correction to refine unit test — galbramc / detail
Updates for refine incliding 2D triangle hack. Still need help from Mike. — galbramc / detail
Dissable refine 2D test — galbramc / detail
Refine now works in 2D — galbramc / detail
Add restart interface for refine — galbramc / detail
Increase timeour for refine2D tests — galbramc / detail
Use MPI_sleep for avro execution — galbramc / detail
Only write EGADS file from one processor and reduce iterations in refine2D_btest — galbramc / detail
Add missing include — galbramc / detail
Relax refine timie a bit more — galbramc / detail
Add missing link library — galbramc / detail
refine2D with EGADS still does not quite work. — galbramc / detail
Fix for parallel 2D refine — galbramc / detail
One more refine fix — galbramc / detail
Only remove files on the rank 0 processor — galbramc / detail
Warning fixes — galbramc / detail
Fix up Box Tet WakeCut for adjoint — galbramc / detail
Added Ismail-Roe entropy conservative flux (with optional entropy fix based on Harten) in 2D. Unit tested to ensure: primal and entropy consistency for the entropy conservative formulation, primal consistency and entropy dissipation for version with entropy fix. Extension to RANSSA NOT implemented. — blsc / detail
Added header: src/pde/NS/Roe.h to src/pde/NS/IsmailRoe.h to it can access datatype: RoeEntropyFix — blsc / detail
Typo fix in enum RoeEntropyFix: eIsmailRoeEntopyNeutral -> eIsmailRoeEntropyNeutral — blsc / detail
Added SPE10 permeability datasets with reduced contrast ratios — savithru / detail
Updated quarter five spot case to use avro — savithru / detail
lorenz building, not converging. need unit tests. — blsc / detail
in progress... — blsc / detail
lorenz in progress, not converging, seems to need stabilization. — blsc / detail
working on vmsd. — blsc / detail
added DG, broken. now VMSD and DGBR2 are both broken and CG is unstable :) — blsc / detail
more of the same. — blsc / detail
made some fixes, fem of lorenz seems to be working (w/ 4M elements...) — blsc / detail
trying to figure out what's wrong — blsc / detail
unit test addition.. — blsc / detail
hmm looking for valgrid shit now. — blsc / detail
added exact solution for alpha=0 case. — blsc / detail
configured for convergence test, convergent. — blsc / detail
output tricks — blsc / detail
working on homotopy pde — blsc / detail
for marshall — blsc / detail
Some progress for BCHomotopy — blsc / detail
homotopy in progress (still) — blsc / detail
on the way to a block 2x2 version of htc... — blsc / detail
slow but steady. — blsc / detail
on the curve between the easy solution and the hard one — blsc / detail
bob loblaw law blog — blsc / detail
homotopy might be working might be leaking might be a figment of my imagination. — blsc / detail
fieldbase uninitialized data fix. — blsc / detail
homotopy running but breaking for chaos :( — blsc / detail
added dumps — blsc / detail
fixed homotopy bug i think. — blsc / detail
added adaptive stepping to homotopy. — blsc / detail
ready for ben — blsc / detail
state of the art — blsc / detail
small changes. — blsc / detail
Removed PDE template from BCLorenz since it was no longer needed. Generalized the new homotopy integrand so it can be applied to Real and VectorS PDE::ArrayQ types. Updates required adding move construction and move assignment operator to VectorBlock_2 to prevent warnings about using implicit constructors under g++9. Propogated the required changes to unit test and sandbox cases. — blsc / detail
Statically condensed VMSD with homotopy: Updated the jacobian functions in the the HTC algebraic equation set, added logic for static condensation to Block 2x2 matrix interface with UMFPACK, and also had to expose the types of the vectors in VectorBlock_2. Also updated the Homotopy logic to be more robust, which mostly consists of making sure steps taken in the predictor phase are valid. — blsc / detail
Added ability to pass q and qp into source term individually for VMSDBR2. This is needed for some of the resolution sensors I am experimenting with for shock capturing. This required an additional source function to be added to PDEs that takes q, qp, gradq, and gradqp. Currently, this new function forwards (q+qp) and (gradq+gradqp) to the original source function. Unit tests have been added to test consistency of this new source term. — blsc / detail
Added new boundary condition: BCTypeFullStateRadialInflow_mitState. This is a FullState_mitState style boundary condition, except velocity magnitude is specified. The direction is then calculated as radially outward from an origin at (0,0). — blsc / detail
Added PDESourceOnly2D which implements a pde q - a = 0. This is for use as the auxiliary equation for Homotopy continuation. Unit tests added to applying this PDE to adevction diffusion, Euler and Euler with artificial diffusion. Also found that the jacobianMasterState and jacobianFluxAdvectveTime functions were reversed for the sensor PDE. This has been fixed and unit tests updated. — blsc / detail
Setting up a bump in a subsonic inviscid flow. Now verbose enables / disables all console output of the halving linesearch. Also added some extra function to PDEEuler2D to forward calls that have params. — blsc / detail
Added sourceCoarse and sourceFine function calls to VMSDBR2, which are source terms weighted against the coarse and fine space test functions respectively. For the most part these forward calls to the source function in the PDE. These are required because VMSD does not have a unique solution for the PDE q - a = 0 if a is a constant. Since this is the case in the SourceOnly PDE, that PDE now solves (\bar{q} - a) = 0, and q' = 0. — blsc / detail
Setting up RadialShock problem using VMSDBR2 and Homotopy. This required instantiating objects relating to the Block 2x2 linear algebra for PDEs of dimension 5. It also required adding the new source functions to the Sensor PDE. — blsc / detail
Renamed eLaplaceViscosity to eLaplaceViscosityEnthalpy in enum EulerArtViscosity. This is a more descriptive name for this option: artificial diffusion is applied to the gradient of total enthalpy (not total internal energy as a pure Laplacian operator would suggest). Now the option eLaplaceViscosityEnergy can be added to the enum EulerArtViscosity to describe the artificial diffusion being applied to the conservation variables. — blsc / detail
Upgraded to latest AFLR — galbramc / detail
Added eLaplaceViscosityEnergy to enum EulerArtViscosity. This applies a Laplacian operator to the conservation variable gradient (i.e. energy gradient not enthalpy gradient). System tests have been added to ensure that the calculation is correct for Euler2D and RANSSA2D PDEs. — blsc / detail
Fixed two bugs highlighted by Jenkins. 1) PDELorenz was using abs on a Real. 2) Several lines in SolutionFunction_Euler2D.h were too long. — blsc / detail
Look for Real Time library for AFLR — galbramc / detail
Fix for last commit — galbramc / detail
A few AFLR fixes — galbramc / detail
Previous commits overwrote some updates to the PETSc interface, so had to revert to commit 8fa5bcb008f4c19ec223d6ebfa628f6d4d9354cd for those files. Also updated files that failed vera checks. — blsc / detail
Instantiations for Block2x2 systems for a PDE of 5 equations were missing from MKL. Also, the version of UMFPack on Ubuntu 12.04 does not support the new exception types, so have reverted src/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver.cpp back to commit 45d3cd53036a51bccf943d9c5097544bd220d8f8 — blsc / detail
Relaxed tolerances on JacobianCell_VMSD_BR2_AD_btest for intel. Added #ifdef protection on the new UMFPACk error flags for older versions of UMFPack (pre 5.5) — blsc / detail
Updated BuildBoost to Boost 1.72 — galbramc / detail
Updated AFLR to 16.30.11. Lots of cppcheck fixes. — galbramc / detail
Add missing include — galbramc / detail
Fixes for AFLR4 farfield mesh generation — galbramc / detail
A few nightly fixes — galbramc / detail
Add continuousGlobalMap for LIP solvers — galbramc / detail
Fix the last fix — galbramc / detail
Use CMake python when building boost — galbramc / detail
Fix for gold linker with MKL — galbramc / detail
Some more nightly fixes — galbramc / detail
One more nightly fix — galbramc / detail