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#270270falsefalse27076009ABORTED1602362602425https://acdl.mit.edu/csi/job/SANS_Weekly/270/reynoldssrc/pde/TCNE/Q1DTCNEConservative.htest/unit/pde/TCNE/Q1DConservative_btest.cppsrc/pde/TCNE/CMakeLists.txtsrc/pde/TCNE/BCTCNEEuler1D.cppsrc/pde/TCNE/BCTCNEEuler1D.hsrc/pde/TCNE/PDETCNEEuler1D.hsrc/pde/TCNE/TCNEGasModel.cppsrc/pde/TCNE/TraitsTCNEEuler.hsrc/pde/TCNE/TCNEGasModel.hCMakeLists.txttest/unit/pde/TCNE/CMakeLists.txtsrc/pde/TCNE/Q1DTCNEConservative.cppsrc/pde/CMakeLists.txtsrc/pde/TCNE/TCNEVariable1D.hsrc/pde/TCNE/BCTCNEEuler1D_mitState.htest/unit/pde/TCNE/TCNEVariable1D_btest.cppsrc/pde/TCNE/TCNEVariable1D.cpptest/unit/pde/TCNE/PDETCNEEuler1D_btest.cpptest/unit/pde/CMakeLists.txttest/unit/pde/TCNE/BCTCNEEuler1D_btest.cpp5e91692fba072dd5682fc554c838731d63d027821569427070000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduFirst pass at structuring TCNE pde, a little messy 2019-09-25 11:57:50 -04005e91692fba072dd5682fc554c838731d63d02782First pass at structuring TCNE pde, a little messyaddtest/unit/pde/TCNE/BCTCNEEuler1D_btest.cppaddsrc/pde/TCNE/TCNEGasModel.cppaddsrc/pde/TCNE/BCTCNEEuler1D_mitState.haddsrc/pde/TCNE/CMakeLists.txtaddsrc/pde/TCNE/Q1DTCNEConservative.cppeditsrc/pde/CMakeLists.txtaddsrc/pde/TCNE/PDETCNEEuler1D.haddsrc/pde/TCNE/TCNEVariable1D.haddsrc/pde/TCNE/TCNEVariable1D.cppeditCMakeLists.txtaddtest/unit/pde/TCNE/CMakeLists.txtaddsrc/pde/TCNE/Q1DTCNEConservative.haddsrc/pde/TCNE/TCNEGasModel.haddsrc/pde/TCNE/BCTCNEEuler1D.cppaddsrc/pde/TCNE/BCTCNEEuler1D.haddtest/unit/pde/TCNE/PDETCNEEuler1D_btest.cppedittest/unit/pde/CMakeLists.txtaddtest/unit/pde/TCNE/TCNEVariable1D_btest.cppaddtest/unit/pde/TCNE/Q1DConservative_btest.cppaddsrc/pde/TCNE/TraitsTCNEEuler.hsrc/pde/TCNE/Q1DTCNEConservative.hsrc/pde/TCNE/CMakeLists.txtsrc/pde/TCNE/TCNEGasModel_Perfect.cppsrc/pde/TCNE/PDETCNEEuler1D.hsrc/pde/TCNE/TCNEGasModel.cppsrc/pde/TCNE/TraitsTCNEEuler.hsrc/pde/TCNE/TCNEGasModel.hsrc/pde/TCNE/TCNEGasModel_StatMech.cppsrc/pde/TCNE/TCNEGasModel_CurveFit.cppsrc/pde/TCNE/TCNEGasModel_Perfect.hsrc/pde/TCNE/TCNEChemistryModels.cppsrc/pde/TCNE/TCNEChemistryModels.hsrc/pde/TCNE/TCNEGasModel_CurveFit.hsrc/pde/TCNE/TCNEGasModel_StatMech.h7715ffaa8cf945a7b507436f9c798136044e7d501575994712000https://acdl.mit.edu/csi/user/ksaboksaboksabo@mit.eduTCNE stuff 2019-12-10 11:18:32 -05007715ffaa8cf945a7b507436f9c798136044e7d50TCNE stuffdeletesrc/pde/TCNE/TCNEGasModel.heditsrc/pde/TCNE/PDETCNEEuler1D.haddsrc/pde/TCNE/TCNEChemistryModels.haddsrc/pde/TCNE/TCNEChemistryModels.cppeditsrc/pde/TCNE/TraitsTCNEEuler.haddsrc/pde/TCNE/TCNEGasModel_Perfect.heditsrc/pde/TCNE/CMakeLists.txtaddsrc/pde/TCNE/TCNEGasModel_Perfect.cppaddsrc/pde/TCNE/TCNEGasModel_CurveFit.hdeletesrc/pde/TCNE/TCNEGasModel.cppaddsrc/pde/TCNE/TCNEGasModel_StatMech.haddsrc/pde/TCNE/TCNEGasModel_StatMech.cppaddsrc/pde/TCNE/TCNEGasModel_CurveFit.cppeditsrc/pde/TCNE/Q1DTCNEConservative.hsrc/pde/IBL/IBL_Traits.hsrc/pde/IBL/QauxvInterpret2D.h574ec123d2ade9534559c0b8fe9061ccc7edde291580089668000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edurelocate QauxvInterpret forward declaration in prep for 3D stuff 2020-01-26 19:47:48 -0600574ec123d2ade9534559c0b8fe9061ccc7edde29relocate QauxvInterpret forward declaration in prep for 3D stuffeditsrc/pde/IBL/QauxvInterpret2D.heditsrc/pde/IBL/IBL_Traits.htest/unit/pde/IBL/PDEIBL3D_btest.cppsrc/pde/IBL/PDEIBL3D.hsrc/pde/IBL/ThicknessesCoefficients3D.hsrc/pde/IBL/PDEIBL2D.hsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosure.cppsrc/pde/IBL/IBLVarDataType3D.hsrc/pde/IBL/CMakeLists.txtsrc/pde/IBL/VarInterpret3D.hsrc/pde/IBL/IBL_Traits.hsrc/pde/IBL/QauxvInterpret3D.h1b74a67bd9ad437a3ee014dfce30e8afadf818ea1580092551000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded basic stuff for 3D IBL 2020-01-26 20:35:51 -06001b74a67bd9ad437a3ee014dfce30e8afadf818eaAdded basic stuff for 3D IBLaddsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosure.cppeditsrc/pde/IBL/CMakeLists.txtaddsrc/pde/IBL/QauxvInterpret3D.haddsrc/pde/IBL/ThicknessesCoefficients3D.haddsrc/pde/IBL/IBLVarDataType3D.heditsrc/pde/IBL/PDEIBL2D.haddsrc/pde/IBL/PDEIBL3D.haddsrc/pde/IBL/VarInterpret3D.haddtest/unit/pde/IBL/PDEIBL3D_btest.cppeditsrc/pde/IBL/IBL_Traits.hsrc/pde/IBL/PDEIBLSplitAmpLag2D.hab2c8d69a756a8f9e8f797bc9d0854440f1f83481580330875000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduMinor cleanup 2020-01-29 14:47:55 -0600ab2c8d69a756a8f9e8f797bc9d0854440f1f8348Minor cleanupeditsrc/pde/IBL/PDEIBLSplitAmpLag2D.hsrc/pde/IBL/PDEIBL3D.hsrc/pde/IBL/QauxvInterpret3D.heed57d981bd53ff3c557a8308efc8574375bf19c1580330906000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduInitial pass on PDEIBL3D 2020-01-29 14:48:26 -0600eed57d981bd53ff3c557a8308efc8574375bf19cInitial pass on PDEIBL3Deditsrc/pde/IBL/QauxvInterpret3D.heditsrc/pde/IBL/PDEIBL3D.hsrc/pde/IBL/PDEIBL3D.hsrc/pde/IBL/ThicknessesCoefficients3D.hsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosure.cppsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosure_impl.h2b6666237a976a8afe43c1d2548d891a6141ae6c1580334888000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFilled in 3D IBL closure with fully 3D components set to zero 2020-01-29 15:54:48 -06002b6666237a976a8afe43c1d2548d891a6141ae6cFilled in 3D IBL closure with fully 3D components set to zeroeditsrc/pde/IBL/ThicknessesCoefficients3D.heditsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosure.cppeditsrc/pde/IBL/PDEIBL3D.haddsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosure_impl.hsrc/pde/IBL/PDEIBL3D.cppsrc/pde/IBL/CMakeLists.txtsrc/pde/IBL/BCIBL3D.hsrc/pde/IBL/BCIBL3D.cpp2ceeca3cb25b1be5ad88ff5ec18833773b35fd281580351033000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded BCNone for IBL3D 2020-01-29 20:23:53 -06002ceeca3cb25b1be5ad88ff5ec18833773b35fd28Added BCNone for IBL3Daddsrc/pde/IBL/BCIBL3D.haddsrc/pde/IBL/PDEIBL3D.cppaddsrc/pde/IBL/BCIBL3D.cppeditsrc/pde/IBL/CMakeLists.txttest/sandbox/AnalyticSolve3D_DGAdvective_IBL_StagnationFlow_Quasi2D_toy.cpp4bb08c123a8979dbadc62645878358cfdd4215a31580865660000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadded a working version of sandbox case for IBL3D 2020-02-04 20:21:00 -05004bb08c123a8979dbadc62645878358cfdd4215a3added a working version of sandbox case for IBL3Daddtest/sandbox/AnalyticSolve3D_DGAdvective_IBL_StagnationFlow_Quasi2D_toy.cpptest/unit/UnitGrids/CMakeLists.txttest/unit/UnitGrids/XField3D_Sheet_Triangle_X1.htest/unit/UnitGrids/XField3D_Sheet_Triangle_X1.cpptest/unit/UnitGrids/XField3D_Sheet_Triangle_X1_btest.cppb2e0edb8569f839c0cfd4c0f6e6fc67d00fbdb361580925991000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded a sheet grid of triangles in 3D for IBL3D 2020-02-05 13:06:31 -0500b2e0edb8569f839c0cfd4c0f6e6fc67d00fbdb36Added a sheet grid of triangles in 3D for IBL3Daddtest/unit/UnitGrids/XField3D_Sheet_Triangle_X1.haddtest/unit/UnitGrids/XField3D_Sheet_Triangle_X1_btest.cppedittest/unit/UnitGrids/CMakeLists.txtaddtest/unit/UnitGrids/XField3D_Sheet_Triangle_X1.cppsrc/Field/FieldArea_DG_Cell_Instantiate_3D.cppe92683ed584471e3442fd88f1960807a3b4816391580955893000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded instantiation 2020-02-05 21:24:53 -0500e92683ed584471e3442fd88f1960807a3b481639Added instantiationeditsrc/Field/FieldArea_DG_Cell_Instantiate_3D.cpptest/sandbox/AnalyticSolve3D_DGAdvective_IBL_StagnationFlow_Quasi2D_toy.cpp4a823ec5b68a182244ea4514d18154ea07080f261580955913000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduIntermediate commit 2020-02-05 21:25:13 -05004a823ec5b68a182244ea4514d18154ea07080f26Intermediate commitedittest/sandbox/AnalyticSolve3D_DGAdvective_IBL_StagnationFlow_Quasi2D_toy.cppsrc/Discretization/Galerkin/IntegrandBoundaryTrace_None_Galerkin_manifold_IBL3D.hsrc/pde/IBL/PDEIBL3D.hsrc/Discretization/Galerkin/IntegrandCell_Galerkin_manifold_IBL3D.hsrc/Discretization/Galerkin/IntegrandInteriorTrace_Galerkin_manifold_IBL3D.hsrc/pde/NDConvert/PDENDConvertSpace2D.htest/sandbox/AnalyticSolve3D_DGAdvective_IBL_StagnationFlow_Quasi2D_toy.cppsrc/Field/Element/TraceUnitNormal.hsrc/pde/NDConvert/PDENDConvertSpace3D.ha7ca093aaf37918c743cfc09d5fb0c609f0235eb1581097754000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduWorking on integrands for first 3D IBL case 2020-02-07 12:49:14 -0500a7ca093aaf37918c743cfc09d5fb0c609f0235ebWorking on integrands for first 3D IBL caseaddsrc/Discretization/Galerkin/IntegrandInteriorTrace_Galerkin_manifold_IBL3D.heditsrc/pde/NDConvert/PDENDConvertSpace3D.haddsrc/Discretization/Galerkin/IntegrandBoundaryTrace_None_Galerkin_manifold_IBL3D.haddsrc/Discretization/Galerkin/IntegrandCell_Galerkin_manifold_IBL3D.heditsrc/pde/NDConvert/PDENDConvertSpace2D.hedittest/sandbox/AnalyticSolve3D_DGAdvective_IBL_StagnationFlow_Quasi2D_toy.cppeditsrc/pde/IBL/PDEIBL3D.heditsrc/Field/Element/TraceUnitNormal.hsrc/Discretization/Galerkin/IntegrandInteriorTrace_Galerkin_manifold_IBL3D.htest/sandbox/AnalyticSolve3D_DGAdvective_IBL_StagnationFlow_Quasi2D_toy.cppsrc/Discretization/Galerkin/IntegrandBoundaryTrace_None_Galerkin_manifold_IBL3D.hsrc/Discretization/Galerkin/IntegrandCell_Galerkin_manifold_IBL3D.h73764c3f8259f8040c02b060e424b2d7452b80b41581393025000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduMore fixes to integrand classes for IBL3D 2020-02-10 22:50:25 -050073764c3f8259f8040c02b060e424b2d7452b80b4More fixes to integrand classes for IBL3Deditsrc/Discretization/Galerkin/IntegrandInteriorTrace_Galerkin_manifold_IBL3D.heditsrc/Discretization/Galerkin/IntegrandBoundaryTrace_None_Galerkin_manifold_IBL3D.heditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_manifold_IBL3D.hedittest/sandbox/AnalyticSolve3D_DGAdvective_IBL_StagnationFlow_Quasi2D_toy.cppsrc/pde/IBL/PDEIBL3D.hsrc/Field/FieldArea_DG_BoundaryTrace_Instantiate_3D.cppsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppsrc/pde/IBL/PDEIBL3D.cppsrc/pde/IBL/CMakeLists.txtsrc/Field/FieldArea_Instantiate_3D.cppsrc/Field/output_Tecplot/output_Tecplot_Area_3D.cppsrc/Field/FieldLinesearch/FieldLinesearch_Area_Instantiate.cppsrc/Field/output_Tecplot/output_Tecplot_FieldArea.cpp9da44427ff2ee7316d773acd4a75087f26632e701581393074000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed instantiations for IBL3D 2020-02-10 22:51:14 -05009da44427ff2ee7316d773acd4a75087f26632e70Fixed instantiations for IBL3Deditsrc/pde/IBL/CMakeLists.txteditsrc/Field/FieldArea_Instantiate_3D.cppeditsrc/pde/IBL/PDEIBL3D.heditsrc/Field/FieldLinesearch/FieldLinesearch_Area_Instantiate.cppeditsrc/Field/output_Tecplot/output_Tecplot_Area_3D.cppeditsrc/Field/FieldArea_DG_BoundaryTrace_Instantiate_3D.cppeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppeditsrc/pde/IBL/PDEIBL3D.cppeditsrc/Field/output_Tecplot/output_Tecplot_FieldArea.cppsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosure.cppsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosure_impl.hd3b20fd36159edb50cafa0301ba8a446b83e5ebf1581429465000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdd explicit instantiations and fix typos in closure class 2020-02-11 08:57:45 -0500d3b20fd36159edb50cafa0301ba8a446b83e5ebfAdd explicit instantiations and fix typos in closure classeditsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosure_impl.heditsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosure.cppsrc/Discretization/Galerkin/IntegrandInteriorTrace_Galerkin_manifold_IBL3D.hsrc/Discretization/Galerkin/IntegrandBoundaryTrace_None_Galerkin_manifold_IBL3D.hsrc/Field/Element/ElementXFieldArea.hsrc/Field/Element/ElementXFieldArea_Instantiate_3D.cppsrc/Field/Element/ElementXFieldArea_impl.hsrc/Discretization/Galerkin/IntegrandCell_Galerkin_manifold_IBL3D.h9a76318784b442c0fb88e4bfc05c2a24815b58581581444368000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduInitial version of local Cartesian basis construction for 3D IBL 2020-02-11 13:06:08 -05009a76318784b442c0fb88e4bfc05c2a24815b5858Initial version of local Cartesian basis construction for 3D IBLeditsrc/Field/Element/ElementXFieldArea_Instantiate_3D.cppeditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_manifold_IBL3D.heditsrc/Discretization/Galerkin/IntegrandInteriorTrace_Galerkin_manifold_IBL3D.heditsrc/Field/Element/ElementXFieldArea.heditsrc/Discretization/Galerkin/IntegrandBoundaryTrace_None_Galerkin_manifold_IBL3D.heditsrc/Field/Element/ElementXFieldArea_impl.hsrc/Field/Element/ElementXFieldArea_Instantiate_3D.cppsrc/Field/Element/ElementXFieldArea.h778f8a9b554b6e736ed6a111f66179e6fa8496351581444577000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduMinor cleanup 2020-02-11 13:09:37 -0500778f8a9b554b6e736ed6a111f66179e6fa849635Minor cleanupeditsrc/Field/Element/ElementXFieldArea.heditsrc/Field/Element/ElementXFieldArea_Instantiate_3D.cpptest/sandbox/AnalyticSolve3D_DGAdvective_IBL_StagnationFlow_Quasi2D_toy.cppsrc/Field/Element/ElementXFieldArea.hsrc/pde/NDConvert/PDENDConvertSpace3D.hsrc/pde/IBL/QauxvInterpret3D.h4992f7cbbd8ca94e238acd1e30edeabcb428ef511581451265000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFix constuction of q1 and q2 vectors in case of stagnation flows 2020-02-11 15:01:05 -05004992f7cbbd8ca94e238acd1e30edeabcb428ef51Fix constuction of q1 and q2 vectors in case of stagnation flowseditsrc/pde/NDConvert/PDENDConvertSpace3D.heditsrc/pde/IBL/QauxvInterpret3D.hedittest/sandbox/AnalyticSolve3D_DGAdvective_IBL_StagnationFlow_Quasi2D_toy.cppeditsrc/Field/Element/ElementXFieldArea.htest/sandbox/AnalyticSolve3D_DGAdvective_IBL_StagnationFlow_Quasi2D_toy.cppsrc/pde/NDConvert/PDENDConvertSpace3D.hsrc/Discretization/Galerkin/IntegrandCell_Galerkin_manifold_IBL3D.h61d0fa14caffc3c0dcbc45b2b3842982aa93bff31581478028000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdd velocity gradient calculation in cell integrand of 3D IBL 2020-02-11 22:27:08 -050061d0fa14caffc3c0dcbc45b2b3842982aa93bff3Add velocity gradient calculation in cell integrand of 3D IBLeditsrc/pde/NDConvert/PDENDConvertSpace3D.hedittest/sandbox/AnalyticSolve3D_DGAdvective_IBL_StagnationFlow_Quasi2D_toy.cppeditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_manifold_IBL3D.htest/system/AnalyticSolve/AnalyticSolve2D_DGAdvective_IBLSplitAmpLag_StagnationFlow_LamiBL_btest.cppsrc/pde/IBL/GetSolnDofCell_IBL2D.htest/system/AnalyticSolve/AnalyticSolve2D_DGAdvective_IBL_StagnationFlow_LamiBL_btest.cpp10cf65a50ddfed84ae257aaa6737e1b61310f1931581544167000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactor and add a 2D stagnation flow test case 2020-02-12 16:49:27 -050010cf65a50ddfed84ae257aaa6737e1b61310f193Refactor and add a 2D stagnation flow test caseaddtest/system/AnalyticSolve/AnalyticSolve2D_DGAdvective_IBLSplitAmpLag_StagnationFlow_LamiBL_btest.cppedittest/system/AnalyticSolve/AnalyticSolve2D_DGAdvective_IBL_StagnationFlow_LamiBL_btest.cppeditsrc/pde/IBL/GetSolnDofCell_IBL2D.htest/unit/UnitGrids/XField3D_Sheet_Quad_X1.cpptest/unit/UnitGrids/XField3D_Sheet_Quad_X1_btest.cpptest/unit/UnitGrids/XField3D_Sheet_Quad_X1.h1cfdb52bd9d446ccec911b7c11d87427f41e8c7d1581554407000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdd a 3D quad grid 2020-02-12 19:40:07 -05001cfdb52bd9d446ccec911b7c11d87427f41e8c7dAdd a 3D quad gridaddtest/unit/UnitGrids/XField3D_Sheet_Quad_X1.cppaddtest/unit/UnitGrids/XField3D_Sheet_Quad_X1.haddtest/unit/UnitGrids/XField3D_Sheet_Quad_X1_btest.cpptest/unit/UnitGrids/CMakeLists.txt370aab050bc8c2f5cde2df6ce4c5e43d387c70a81581555748000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduUpdate cmake list for unit grid test 2020-02-12 20:02:28 -0500370aab050bc8c2f5cde2df6ce4c5e43d387c70a8Update cmake list for unit grid testedittest/unit/UnitGrids/CMakeLists.txttest/unit/UnitGrids/XField3D_Sheet_Quad_X1.cpp581d02eb021fe95c54dafd99bee871bd12cad7421581555977000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFix typo in 3D quad sheet grid 2020-02-12 20:06:17 -0500581d02eb021fe95c54dafd99bee871bd12cad742Fix typo in 3D quad sheet gridedittest/unit/UnitGrids/XField3D_Sheet_Quad_X1.cppsrc/Discretization/Galerkin/IntegrandCell_Galerkin_manifold_IBL3D.h613e340d7b5816605a7113772ab186954c01dc9f1581616367000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edufix bug in qauxv gradient calculation in 3D IBL cell integrand 2020-02-13 12:52:47 -0500613e340d7b5816605a7113772ab186954c01dc9ffix bug in qauxv gradient calculation in 3D IBL cell integrandeditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_manifold_IBL3D.hsrc/pde/IBL/PDEIBL3D.h92a90f5b964411fe26f07e331ef169e6c86ebdde1581616918000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFix the scale and dimension of dissipation integral in 3D integral 2020-02-13 13:01:58 -050092a90f5b964411fe26f07e331ef169e6c86ebddeFix the scale and dimension of dissipation integral in 3D integraleditsrc/pde/IBL/PDEIBL3D.hsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosure_impl.h00ce465791b210aae9e1b5f18c85ee89f70c4b0e1581618723000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edufix a typo in thickness identity 2020-02-13 13:32:03 -050000ce465791b210aae9e1b5f18c85ee89f70c4b0efix a typo in thickness identityeditsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosure_impl.htest/sandbox/AnalyticSolve3D_DGAdvective_IBL_StagnationFlow_Quasi2D_toy.cpp46f0ecb970ca172c82aaeb484e5a1e6867376f941581619425000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdd more options to 3D IBL stagnation flow case, including quad grid, solution initialization, 2020-02-13 13:43:45 -050046f0ecb970ca172c82aaeb484e5a1e6867376f94Add more options to 3D IBL stagnation flow case, including quad grid, solution initialization,edittest/sandbox/AnalyticSolve3D_DGAdvective_IBL_StagnationFlow_Quasi2D_toy.cppsrc/Discretization/Galerkin/IntegrandCell_Galerkin_manifold_IBL3D.h459fde477f1df6b755ee5f74faa9769bccab80421581722311000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduone more bug fix in cell integrand for 3D IBL 2020-02-14 18:18:31 -0500459fde477f1df6b755ee5f74faa9769bccab8042one more bug fix in cell integrand for 3D IBLeditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_manifold_IBL3D.hsrc/Field/Element/TraceUnitNormal.h2b3be2bd9fd37678d28520895f6ff0e29ddeeee61581813221000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduBugfix in calculation of trace unit normal vector for area cells in 3D 2020-02-15 19:33:41 -05002b3be2bd9fd37678d28520895f6ff0e29ddeeee6Bugfix in calculation of trace unit normal vector for area cells in 3Deditsrc/Field/Element/TraceUnitNormal.hsrc/pde/IBL/PDEIBL3D.htest/system/IO/AnalyticSolve/IBL3D_StagnationFlow_LamiBL_Triangle_nelem1d2_p3_Test.txttest/system/IO/AnalyticSolve/IBL3D_StagnationFlow_LamiBL_Triangle_nelem1d1_p3_Test.txttest/system/IO/AnalyticSolve/IBL3D_StagnationFlow_LamiBL_Triangle_nelem1d1_p2_Test.txttest/system/IO/AnalyticSolve/IBL3D_StagnationFlow_LamiBL_Triangle_nelem1d2_p2_Test.txttest/system/AnalyticSolve/AnalyticSolve_IBL3D_StagnationFlow_LamiBL_Triangle_btest.cpptest/system/IO/AnalyticSolve/IBL3D_StagnationFlow_LamiBL_Triangle_nelem1d2_p1_Test.txttest/system/IO/AnalyticSolve/IBL3D_StagnationFlow_LamiBL_Triangle_nelem1d2_p4_Test.txttest/system/IO/AnalyticSolve/IBL3D_StagnationFlow_LamiBL_Triangle_nelem1d1_p1_Test.txttest/sandbox/AnalyticSolve3D_DGAdvective_IBL_StagnationFlow_Quasi2D_toy.cpptest/system/IO/AnalyticSolve/IBL3D_StagnationFlow_LamiBL_Triangle_nelem1d2_p0_Test.txttest/system/IO/AnalyticSolve/IBL3D_StagnationFlow_LamiBL_Triangle_nelem1d1_p0_Test.txtsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosure_impl.htest/system/IO/AnalyticSolve/IBL3D_StagnationFlow_LamiBL_Triangle_nelem1d1_p4_Test.txtd1e50eae63f73676caf6afe415f77caf62e050f31581815674000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdd Nishida's crossflow closure. Add pyrite check of stagnation flow case for 3D IBL. Minor addition for debugging in PDEIBL3D 2020-02-15 20:14:34 -0500d1e50eae63f73676caf6afe415f77caf62e050f3Add Nishida's crossflow closure. Add pyrite check of stagnation flow case for 3D IBL. Minor addition for debugging in PDEIBL3Daddtest/system/AnalyticSolve/AnalyticSolve_IBL3D_StagnationFlow_LamiBL_Triangle_btest.cppaddtest/system/IO/AnalyticSolve/IBL3D_StagnationFlow_LamiBL_Triangle_nelem1d2_p1_Test.txtaddtest/system/IO/AnalyticSolve/IBL3D_StagnationFlow_LamiBL_Triangle_nelem1d1_p2_Test.txtaddtest/system/IO/AnalyticSolve/IBL3D_StagnationFlow_LamiBL_Triangle_nelem1d2_p0_Test.txtaddtest/system/IO/AnalyticSolve/IBL3D_StagnationFlow_LamiBL_Triangle_nelem1d2_p2_Test.txtaddtest/system/IO/AnalyticSolve/IBL3D_StagnationFlow_LamiBL_Triangle_nelem1d1_p0_Test.txtaddtest/system/IO/AnalyticSolve/IBL3D_StagnationFlow_LamiBL_Triangle_nelem1d1_p4_Test.txtaddtest/system/IO/AnalyticSolve/IBL3D_StagnationFlow_LamiBL_Triangle_nelem1d1_p1_Test.txteditsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosure_impl.heditsrc/pde/IBL/PDEIBL3D.haddtest/system/IO/AnalyticSolve/IBL3D_StagnationFlow_LamiBL_Triangle_nelem1d1_p3_Test.txtedittest/sandbox/AnalyticSolve3D_DGAdvective_IBL_StagnationFlow_Quasi2D_toy.cppaddtest/system/IO/AnalyticSolve/IBL3D_StagnationFlow_LamiBL_Triangle_nelem1d2_p3_Test.txtaddtest/system/IO/AnalyticSolve/IBL3D_StagnationFlow_LamiBL_Triangle_nelem1d2_p4_Test.txttest/sandbox/AnalyticSolve3D_DGAdvective_IBL_StagnationFlow_Quasi2D_toy.cpptest/system/AnalyticSolve/AnalyticSolve2D_DGAdvective_IBL_StagnationFlow_LamiBL_btest.cpptest/system/AnalyticSolve/AnalyticSolve2D_DGAdvective_IBL_StagnationFlow_SingleElem_LamiBL_btest.cpptest/system/AnalyticSolve/AnalyticSolve_IBL3D_StagnationFlow_LamiBL_Triangle_btest.cpptest/unit/pde/IBL/GetSolnDofCell_IBL_btest.cpp7900f1348b866268fb7b5b895cea1888c5a132bd1581870235000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edufix dependents of refactoring of GetSolnDofCell_IBL 2020-02-16 10:23:55 -06007900f1348b866268fb7b5b895cea1888c5a132bdfix dependents of refactoring of GetSolnDofCell_IBLedittest/unit/pde/IBL/GetSolnDofCell_IBL_btest.cppedittest/system/AnalyticSolve/AnalyticSolve2D_DGAdvective_IBL_StagnationFlow_SingleElem_LamiBL_btest.cppedittest/system/AnalyticSolve/AnalyticSolve_IBL3D_StagnationFlow_LamiBL_Triangle_btest.cppedittest/system/AnalyticSolve/AnalyticSolve2D_DGAdvective_IBL_StagnationFlow_LamiBL_btest.cppedittest/sandbox/AnalyticSolve3D_DGAdvective_IBL_StagnationFlow_Quasi2D_toy.cppsrc/PanelMethod/PiecewiseConstSourcePanel_FlatPlate3D.hb72381babf9d4d098aa1354c52fe357c61d059271582212407000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdd a 3D flat plate source panel method but haven't tested yet 2020-02-20 10:26:47 -0500b72381babf9d4d098aa1354c52fe357c61d05927Add a 3D flat plate source panel method but haven't tested yetaddsrc/PanelMethod/PiecewiseConstSourcePanel_FlatPlate3D.hsrc/Discretization/Galerkin/IntegrandBoundaryTrace_None_Galerkin_manifold_IBL3D.hsrc/PanelMethod/ProjectionToQauxi_IBL.hsrc/PanelMethod/FunctionEvalQauxv_IBL.hsrc/pde/IBL/AlgebraicEquationSet_ProjectToQauxv_PanelMethod.hd7524414e6efec5835913450dd86571bd3ff83c21582213975000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduintermediate commit: minor clenaup and add guards. 2020-02-20 10:52:55 -0500d7524414e6efec5835913450dd86571bd3ff83c2intermediate commit: minor clenaup and add guards.editsrc/Discretization/Galerkin/IntegrandBoundaryTrace_None_Galerkin_manifold_IBL3D.heditsrc/pde/IBL/AlgebraicEquationSet_ProjectToQauxv_PanelMethod.heditsrc/PanelMethod/ProjectionToQauxi_IBL.heditsrc/PanelMethod/FunctionEvalQauxv_IBL.hsrc/PanelMethod/FunctionEvalQauxv_IBL_PiecewiseConstSourcePanel_FlatPlate3D.hsrc/Discretization/Galerkin/IntegrandCell_ProjectFunction.hsrc/PanelMethod/PiecewiseConstSourcePanel_FlatPlate3D_EquationSet.cppsrc/PanelMethod/IntegrandBoundaryTrace_ProjectToQauxi3D.htest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_toy.cppsrc/PanelMethod/ProjectToQauxi_IBL3D.hsrc/pde/IBL/AlgebraicEquationSet_ProjectToQauxv_PiecewiseConstSourcePanel_FlatPlate3D.hsrc/PanelMethod/AlgebraicEquationSet_ProjectToQauxi_FlatPlate3D.hsrc/PanelMethod/PiecewiseConstSourcePanel_FlatPlate3D_EquationSet.hsrc/PanelMethod/CMakeLists.txt5ff6405cf1bef2926a76555f54670d89492f03ee1582214011000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduintermediate commit: working on 3D coupled IBL for torpedo cass 2020-02-20 10:53:31 -05005ff6405cf1bef2926a76555f54670d89492f03eeintermediate commit: working on 3D coupled IBL for torpedo cassaddsrc/PanelMethod/ProjectToQauxi_IBL3D.haddtest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_toy.cppaddsrc/PanelMethod/FunctionEvalQauxv_IBL_PiecewiseConstSourcePanel_FlatPlate3D.haddsrc/pde/IBL/AlgebraicEquationSet_ProjectToQauxv_PiecewiseConstSourcePanel_FlatPlate3D.heditsrc/PanelMethod/CMakeLists.txtaddsrc/PanelMethod/AlgebraicEquationSet_ProjectToQauxi_FlatPlate3D.haddsrc/PanelMethod/IntegrandBoundaryTrace_ProjectToQauxi3D.haddsrc/PanelMethod/PiecewiseConstSourcePanel_FlatPlate3D_EquationSet.cppaddsrc/PanelMethod/PiecewiseConstSourcePanel_FlatPlate3D_EquationSet.heditsrc/Discretization/Galerkin/IntegrandCell_ProjectFunction.hsrc/Discretization/Block/AlgebraicEquationSet_Block3x3.hsrc/Discretization/Block/AlgebraicEquationSet_Block3x3_impl.h4e58ba9ee376eaa68c768e3cdabf0b4485727f3f1582220929000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadd 3x3 equation system 2020-02-20 12:48:49 -05004e58ba9ee376eaa68c768e3cdabf0b4485727f3fadd 3x3 equation systemaddsrc/Discretization/Block/AlgebraicEquationSet_Block3x3.haddsrc/Discretization/Block/AlgebraicEquationSet_Block3x3_impl.hsrc/Discretization/Block/AlgebraicEquationSet_Block3x3_impl.hsrc/LinearAlgebra/VectorType.hsrc/LinearAlgebra/NonZeroPatternType.h1112e02a6bd2d12b7adfa614579ebd10e33a28c61582226704000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edutypo fix. add partial instantiations for system 3x3 vector and matrix types 2020-02-20 14:25:04 -05001112e02a6bd2d12b7adfa614579ebd10e33a28c6typo fix. add partial instantiations for system 3x3 vector and matrix typeseditsrc/LinearAlgebra/NonZeroPatternType.heditsrc/Discretization/Block/AlgebraicEquationSet_Block3x3_impl.heditsrc/LinearAlgebra/VectorType.hsrc/LinearAlgebra/LinesearchDataType.h076508050384a377ef329bd220becff2e9fc36941582232427000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadd linesearch data type for 3x3 equation system 2020-02-20 16:00:27 -0500076508050384a377ef329bd220becff2e9fc3694add linesearch data type for 3x3 equation systemeditsrc/LinearAlgebra/LinesearchDataType.hsrc/Field/Element/ElementXFieldArea.h7ef1aa7d6bc727aabd6af2be04c725c228b6d1d51582232451000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadd missing include 2020-02-20 16:00:51 -05007ef1aa7d6bc727aabd6af2be04c725c228b6d1d5add missing includeeditsrc/Field/Element/ElementXFieldArea.hsrc/PanelMethod/FunctionEvalQauxv_IBL_PiecewiseConstSourcePanel_FlatPlate3D.hsrc/PanelMethod/PiecewiseConstSourcePanel_FlatPlate3D.hsrc/PanelMethod/PiecewiseConstSourcePanel_FlatPlate3D_EquationSet.cpptest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_toy.cppsrc/PanelMethod/AlgebraicEquationSet_ProjectToQauxi_FlatPlate3D.htest/sandbox/AnalyticSolve3D_DGAdvective_IBL_StagnationFlow_Quasi2D_toy.cppsrc/pde/IBL/AlgebraicEquationSet_ProjectToQauxv_PiecewiseConstSourcePanel_FlatPlate3D.hsrc/PanelMethod/PiecewiseConstSourcePanel_FlatPlate3D_EquationSet.hsrc/pde/NDConvert/PDENDConvertSpace3D.hsrc/PanelMethod/CMakeLists.txt94eae62596c99042e3ed1664d41363170b3deab11582232773000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduintermediate commit: fix many compiling errors in the way of running torpedo case for IBL3D. switching computer to continue the work... 2020-02-20 16:06:13 -050094eae62596c99042e3ed1664d41363170b3deab1intermediate commit: fix many compiling errors in the way of running torpedo case for IBL3D. switching computer to continue the work...editsrc/PanelMethod/AlgebraicEquationSet_ProjectToQauxi_FlatPlate3D.hedittest/sandbox/AnalyticSolve3D_DGAdvective_IBL_StagnationFlow_Quasi2D_toy.cppeditsrc/PanelMethod/PiecewiseConstSourcePanel_FlatPlate3D.heditsrc/pde/IBL/AlgebraicEquationSet_ProjectToQauxv_PiecewiseConstSourcePanel_FlatPlate3D.heditsrc/PanelMethod/PiecewiseConstSourcePanel_FlatPlate3D_EquationSet.heditsrc/PanelMethod/CMakeLists.txtedittest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_toy.cppeditsrc/PanelMethod/FunctionEvalQauxv_IBL_PiecewiseConstSourcePanel_FlatPlate3D.heditsrc/PanelMethod/PiecewiseConstSourcePanel_FlatPlate3D_EquationSet.cppeditsrc/pde/NDConvert/PDENDConvertSpace3D.htest/unit/PanelMethod/ProjectionToQauxi_IBL_btest.cppsrc/pde/NDConvert/PDENDConvertSpace2D.hsrc/PanelMethod/ProjectionToQauxi_IBL.hsrc/PanelMethod/IntegrandBoundaryTrace_ProjectToQauxi.hsrc/PanelMethod/IntegrandBoundaryTrace_ProjectToQauxi3D.hsrc/PanelMethod/ProjectToQauxi_IBL3D.h465f7af803281c1455c5ee69be78ee48881c35181582244458000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edurefactor projection to Qauxi 2020-02-20 19:20:58 -0500465f7af803281c1455c5ee69be78ee48881c3518refactor projection to Qauxieditsrc/PanelMethod/ProjectionToQauxi_IBL.heditsrc/PanelMethod/IntegrandBoundaryTrace_ProjectToQauxi.heditsrc/PanelMethod/IntegrandBoundaryTrace_ProjectToQauxi3D.hedittest/unit/PanelMethod/ProjectionToQauxi_IBL_btest.cppeditsrc/PanelMethod/ProjectToQauxi_IBL3D.heditsrc/pde/NDConvert/PDENDConvertSpace2D.hsrc/PanelMethod/AlgebraicEquationSet_ProjectToQauxi_FlatPlate3D.hsrc/PanelMethod/IntegrandInteriorTrace_ProjectToQauxi3D.haf26a94b8604da97ef215e1f46b642d25975aa171582245419000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadd interior trace integrand for projection onto Qauxi 2020-02-20 19:36:59 -0500af26a94b8604da97ef215e1f46b642d25975aa17add interior trace integrand for projection onto Qauxieditsrc/PanelMethod/AlgebraicEquationSet_ProjectToQauxi_FlatPlate3D.haddsrc/PanelMethod/IntegrandInteriorTrace_ProjectToQauxi3D.hsrc/pde/NDConvert/PDENDConvertSpace3D.hsrc/PanelMethod/ProjectToQauxi_IBL3D.h8571bc88a70cb01cd1824e585a92042fe1a7fda31582245923000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduminor fix 2020-02-20 19:45:23 -05008571bc88a70cb01cd1824e585a92042fe1a7fda3minor fixeditsrc/pde/NDConvert/PDENDConvertSpace3D.heditsrc/PanelMethod/ProjectToQauxi_IBL3D.hsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_MatrixBlock_3x3_Instantiate.cppsrc/LinearAlgebra/BlockLinAlg/tools/norm.hsrc/LinearAlgebra/SparseLinAlg/Preconditioners/LU_SGS.hsrc/LinearAlgebra/SparseLinAlg/WriteMatrixMarketFile.hsrc/LinearAlgebra/SparseLinAlg/CMakeLists.txtsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_3x3_Instantiate.cppsrc/NonLinearSolver/LineUpdate/HalvingSearchLineUpdate_MatrixBlock_3x3_Instantiate.cppsrc/NonLinearSolver/CMakeLists.txtsrc/Field/FieldArea_DG_Cell_Instantiate_3D.cppsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatMul/MatMul_Native_MatrixS_Instantiate.cppsrc/NonLinearSolver/NewtonSolver_MatrixBlock_3x3_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/Krylov/FGMRES_MatrixBlock_3x3_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/ScalarMatrix_CRS_int.cppsrc/Field/FieldArea_Instantiate_3D.cpp7633aea0f3c92daaeedcb281ca49de460b572d261582252313000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadd instantiations for IBL3D torpedo case 2020-02-20 21:31:53 -05007633aea0f3c92daaeedcb281ca49de460b572d26add instantiations for IBL3D torpedo caseeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppaddsrc/NonLinearSolver/NewtonSolver_MatrixBlock_3x3_Instantiate.cppeditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_3x3_Instantiate.cppeditsrc/NonLinearSolver/CMakeLists.txteditsrc/Field/FieldArea_Instantiate_3D.cppeditsrc/Field/FieldArea_DG_Cell_Instantiate_3D.cppeditsrc/LinearAlgebra/BlockLinAlg/tools/norm.heditsrc/LinearAlgebra/SparseLinAlg/Preconditioners/LU_SGS.heditsrc/LinearAlgebra/SparseLinAlg/CMakeLists.txtaddsrc/LinearAlgebra/SparseLinAlg/Krylov/FGMRES_MatrixBlock_3x3_Instantiate.cppeditsrc/LinearAlgebra/SparseLinAlg/ScalarMatrix_CRS_int.cppeditsrc/LinearAlgebra/SparseLinAlg/WriteMatrixMarketFile.heditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_MatrixBlock_3x3_Instantiate.cppeditsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatMul/MatMul_Native_MatrixS_Instantiate.cppaddsrc/NonLinearSolver/LineUpdate/HalvingSearchLineUpdate_MatrixBlock_3x3_Instantiate.cppsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosure.cppa6e66c9092817d2f80bb1e4084426615eaca20501582321018000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadd instantiations for coupled IBL3D 2020-02-21 16:36:58 -0500a6e66c9092817d2f80bb1e4084426615eaca2050add instantiations for coupled IBL3Deditsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosure.cppsrc/PanelMethod/FunctionEvalQauxv_IBL_PiecewiseConstSourcePanel_FlatPlate3D.hsrc/PanelMethod/PiecewiseConstSourcePanel_FlatPlate3D.h316c51101e3a6cd9768fa91e79bbd4ead293bf0e1582391302000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduremove unnecessary assert 2020-02-22 11:08:22 -0600316c51101e3a6cd9768fa91e79bbd4ead293bf0eremove unnecessary asserteditsrc/PanelMethod/PiecewiseConstSourcePanel_FlatPlate3D.heditsrc/PanelMethod/FunctionEvalQauxv_IBL_PiecewiseConstSourcePanel_FlatPlate3D.hsrc/Discretization/Block/AlgebraicEquationSet_Block3x3.hsrc/PanelMethod/AlgebraicEquationSet_ProjectToQauxi_FlatPlate3D.htest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_toy.cppsrc/Discretization/Galerkin/IntegrandCell_Galerkin_manifold_IBL3D.h477549421749890d826b781d2a90eef973906b961582391395000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edufix for coupled IBL case to compile and run 2020-02-22 11:09:55 -0600477549421749890d826b781d2a90eef973906b96fix for coupled IBL case to compile and runeditsrc/Discretization/Block/AlgebraicEquationSet_Block3x3.hedittest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_toy.cppeditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_manifold_IBL3D.heditsrc/PanelMethod/AlgebraicEquationSet_ProjectToQauxi_FlatPlate3D.htest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_toy.cppsrc/PanelMethod/PiecewiseConstSourcePanel_FlatPlate3D.h93270ffae81e40c4657b05a1f1890c1d003b4d7c1582575797000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edufix uninitialized dummy DOFs 2020-02-24 14:23:17 -060093270ffae81e40c4657b05a1f1890c1d003b4d7cfix uninitialized dummy DOFsedittest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_toy.cppeditsrc/PanelMethod/PiecewiseConstSourcePanel_FlatPlate3D.hsrc/pde/IBL/QauxvInterpret3D.hsrc/PanelMethod/PiecewiseConstSourcePanel_FlatPlate3D.h4fd02fff737123a991d86f0396952e6245464d9f1582582451000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edufix setDOFFrom in Qauxv 3D (missing q_y previously) 2020-02-24 16:14:11 -06004fd02fff737123a991d86f0396952e6245464d9ffix setDOFFrom in Qauxv 3D (missing q_y previously)editsrc/pde/IBL/QauxvInterpret3D.heditsrc/PanelMethod/PiecewiseConstSourcePanel_FlatPlate3D.htest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_toy.cppa4ff7231ea2085ed78afab2dea1770c123f6bbe41582583133000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduCoupled 3D IBL case converged on some simple variants of the torpedo case: linear and mildly nonlinear radial velocity distribution with attached laminar BLs 2020-02-24 16:25:33 -0600a4ff7231ea2085ed78afab2dea1770c123f6bbe4Coupled 3D IBL case converged on some simple variants of the torpedo case: linear and mildly nonlinear radial velocity distribution with attached laminar BLsedittest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_toy.cpptest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_toy.cpp41cbc605481114cbd2dc08a0cc1696e29ca58cc01582584375000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduTried triangle grid as well: fine on radially linear velocity distribution but couldn't converge on a more nonlinear case 2020-02-24 16:46:15 -060041cbc605481114cbd2dc08a0cc1696e29ca58cc0Tried triangle grid as well: fine on radially linear velocity distribution but couldn't converge on a more nonlinear caseedittest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_toy.cppsrc/PanelMethod/PiecewiseConstSourcePanel_FlatPlate3D_EquationSet.hsrc/PanelMethod/PiecewiseConstSourcePanel_FlatPlate3D_EquationSet.cpp7b10f33951b1f4beb1b6b61995546844a24606761582659265000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.educleaned up unused stuff 2020-02-25 13:34:25 -06007b10f33951b1f4beb1b6b61995546844a2460676cleaned up unused stuffdeletesrc/PanelMethod/PiecewiseConstSourcePanel_FlatPlate3D_EquationSet.hdeletesrc/PanelMethod/PiecewiseConstSourcePanel_FlatPlate3D_EquationSet.cpptest/sandbox/Solve2D_Coupled4x4_IBLSplitAmpLag_CorrelationClosure_CapturedTransition_PTC_toy.cppsrc/Field/Tuple/FieldTuple.hsrc/pde/IBL/SetIBLoutputCellGroup.h1851613de9490ca09bea70c547eb5e13cbae6f401582662681000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edurefactor SetIBLoutputCellGroup to accommodate both 3D and 2D IBL 2020-02-25 14:31:21 -06001851613de9490ca09bea70c547eb5e13cbae6f40refactor SetIBLoutputCellGroup to accommodate both 3D and 2D IBLedittest/sandbox/Solve2D_Coupled4x4_IBLSplitAmpLag_CorrelationClosure_CapturedTransition_PTC_toy.cppeditsrc/pde/IBL/SetIBLoutputCellGroup.heditsrc/Field/Tuple/FieldTuple.htest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_toy.cppadf2e9d51d8fffac34a6c2725844ca9cadb599b11582681219000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduremove outdated include 2020-02-25 20:40:19 -0500adf2e9d51d8fffac34a6c2725844ca9cadb599b1remove outdated includeedittest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_toy.cpptest/sandbox/Solve2D_Coupled4x4_IBLSplitAmpLag_CorrelationClosure_CapturedTransition_PTC_toy.cppsrc/pde/IBL/ElementProjectionOutputIBL3D.hsrc/pde/IBL/SetIBLoutputCellGroup.htest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_toy.cpp65918e03bff791bac12d1b5709f46a5ba6add1851582727757000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edumore refactoring of SetIBLoutputCellGroup for 3D IBL. working progress. switching computer 2020-02-26 09:35:57 -050065918e03bff791bac12d1b5709f46a5ba6add185more refactoring of SetIBLoutputCellGroup for 3D IBL. working progress. switching computeredittest/sandbox/Solve2D_Coupled4x4_IBLSplitAmpLag_CorrelationClosure_CapturedTransition_PTC_toy.cppedittest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_toy.cppeditsrc/pde/IBL/SetIBLoutputCellGroup.haddsrc/pde/IBL/ElementProjectionOutputIBL3D.hsrc/pde/IBL/ElementProjectionOutputIBL3D.hf50095f84fa11fdfed35a18c601b4e83fc9d573e1582822395000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduintermediate commit. switching computer. 2020-02-27 11:53:15 -0500f50095f84fa11fdfed35a18c601b4e83fc9d573eintermediate commit. switching computer.editsrc/pde/IBL/ElementProjectionOutputIBL3D.hsrc/pde/IBL/ElementProjectionOutputIBL3D.hsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatrixD_InverseLU_Real_Instantiate.cppsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatMul/MatMul_Native_Real.cppsrc/Field/FieldArea_DG_Cell_Instantiate_3D.cpptest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_toy.cppsrc/pde/IBL/SetIBLoutputCellGroup3D.hsrc/pde/IBL/VarInterpret3D.hsrc/Field/FieldArea_Instantiate_3D.cppsrc/Field/output_Tecplot/output_Tecplot_FieldArea.cpp1db8b2a721dd038ed95f123f625318e8eb0468151582926441000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduenable tecplot output for 3D IBL 2020-02-28 16:47:21 -05001db8b2a721dd038ed95f123f625318e8eb046815enable tecplot output for 3D IBLeditsrc/Field/FieldArea_Instantiate_3D.cppeditsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatMul/MatMul_Native_Real.cppaddsrc/pde/IBL/SetIBLoutputCellGroup3D.heditsrc/pde/IBL/VarInterpret3D.heditsrc/Field/output_Tecplot/output_Tecplot_FieldArea.cppeditsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatrixD_InverseLU_Real_Instantiate.cppeditsrc/pde/IBL/ElementProjectionOutputIBL3D.hedittest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_toy.cppeditsrc/Field/FieldArea_DG_Cell_Instantiate_3D.cppsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_impl.hsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_factorize.hsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver.cppsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver.h77a601e4432812b74592954593095d071ca618a41582930997000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduadded PyDict options for Verbose and writeMarketMatrix for UMFPACK 2020-02-28 15:03:17 -080077a601e4432812b74592954593095d071ca618a4added PyDict options for Verbose and writeMarketMatrix for UMFPACKeditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_factorize.heditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver.cppeditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver.heditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_impl.hsrc/Discretization/Galerkin/IntegrandBoundaryTrace_Flux_mitState_Galerkin_manifold_IBL3D.htest/sandbox/Solve3D_Uncoupled_IBL_FlatPlate_Blasius_toy.cppsrc/pde/IBL/BCIBL3D.hsrc/pde/IBL/BCIBL3D.cpptest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_toy.cppdf0318840a70e314c081904e365af3129489d4ce1583337009000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadd full-state BC for IBL3D with corresponding boundary trace integrand. verified on an uncoupled Blasius case 2020-03-04 10:50:09 -0500df0318840a70e314c081904e365af3129489d4ceadd full-state BC for IBL3D with corresponding boundary trace integrand. verified on an uncoupled Blasius caseaddsrc/Discretization/Galerkin/IntegrandBoundaryTrace_Flux_mitState_Galerkin_manifold_IBL3D.haddtest/sandbox/Solve3D_Uncoupled_IBL_FlatPlate_Blasius_toy.cppeditsrc/pde/IBL/BCIBL3D.cppeditsrc/pde/IBL/BCIBL3D.hedittest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_toy.cpptest/sandbox/Solve3D_Uncoupled_IBL_FlatPlate_Blasius_toy.cpptest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_Blasius_toy.cppa4bf5579153f6000274e67b662b44b97525171b91583344666000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadd a coupled IBL3D Blasius case 2020-03-04 12:57:46 -0500a4bf5579153f6000274e67b662b44b97525171b9add a coupled IBL3D Blasius caseedittest/sandbox/Solve3D_Uncoupled_IBL_FlatPlate_Blasius_toy.cppaddtest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_Blasius_toy.cppsrc/Discretization/Galerkin/IntegrandCell_Galerkin_PTC_manifold_IBL3D.hsrc/pde/IBL/PDEIBL3D.hsrc/pde/IBL/ThicknessesCoefficients3D.hsrc/SolutionTrek/Continuation/PseudoTime/AlgebraicEquationSet_PTC.hsrc/SolutionTrek/Continuation/PseudoTime/AlgebraicEquationSet_Block3x3_PTC_IBL3D_panel.htest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_Blasius_toy.cppsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosure_impl.hsrc/pde/NDConvert/PDENDConvertSpace3D.hebe49531b20dee304d22489fa96463872b7235431583349995000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduimplement PTC for coupled IBL 3x3 system 2020-03-04 14:26:35 -0500ebe49531b20dee304d22489fa96463872b723543implement PTC for coupled IBL 3x3 systemeditsrc/SolutionTrek/Continuation/PseudoTime/AlgebraicEquationSet_PTC.heditsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosure_impl.heditsrc/pde/IBL/PDEIBL3D.heditsrc/pde/NDConvert/PDENDConvertSpace3D.haddsrc/Discretization/Galerkin/IntegrandCell_Galerkin_PTC_manifold_IBL3D.heditsrc/pde/IBL/ThicknessesCoefficients3D.haddsrc/SolutionTrek/Continuation/PseudoTime/AlgebraicEquationSet_Block3x3_PTC_IBL3D_panel.hedittest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_Blasius_toy.cppsrc/pde/IBL/PDEIBL3D.h7c29a7cb514d34ea556a50e77753b119a8f210341583350066000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadd commented-out stuff for turning off laminar amplification and lag equations in IBL3D 2020-03-04 14:27:46 -05007c29a7cb514d34ea556a50e77753b119a8f21034add commented-out stuff for turning off laminar amplification and lag equations in IBL3Deditsrc/pde/IBL/PDEIBL3D.hsrc/pde/IBL/PDEIBL3D.h34cb13e98f350ba7be5fe4ee22febe70b2f7f61a1583352998000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edufix typo in commented-out stuff 2020-03-04 15:16:38 -050034cb13e98f350ba7be5fe4ee22febe70b2f7f61afix typo in commented-out stuffeditsrc/pde/IBL/PDEIBL3D.htest/unit/UnitGrids/XField3D_Sheet_Triangle_X1.htest/unit/UnitGrids/XField3D_Sheet_Quad_X1.cpptest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_Blasius_toy.cpptest/unit/UnitGrids/XField3D_Sheet_Triangle_X1.cpptest/unit/UnitGrids/XField3D_Sheet_Quad_X1.h9992a6ac9173fb54690925984d19b42705966db91583377836000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduenable rotated mesh for IBL3D torpedo case 2020-03-04 22:10:36 -05009992a6ac9173fb54690925984d19b42705966db9enable rotated mesh for IBL3D torpedo caseedittest/unit/UnitGrids/XField3D_Sheet_Quad_X1.hedittest/unit/UnitGrids/XField3D_Sheet_Triangle_X1.hedittest/unit/UnitGrids/XField3D_Sheet_Triangle_X1.cppedittest/unit/UnitGrids/XField3D_Sheet_Quad_X1.cppedittest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_Blasius_toy.cpptest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_Blasius_toy.cppsrc/pde/IBL/PDEIBL3D.hecafcd1ad3d5e874564da2a8f3b4c3435fc490d91583440813000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduset up a torpedo with grid aligned with xy axes. turned off laminar amplification and lag equations [need to be brought back after testing purely laminar BLs] 2020-03-05 15:40:13 -0500ecafcd1ad3d5e874564da2a8f3b4c3435fc490d9set up a torpedo with grid aligned with xy axes. turned off laminar amplification and lag equations [need to be brought back after testing purely laminar BLs]editsrc/pde/IBL/PDEIBL3D.hedittest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_Blasius_toy.cpptest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_Blasius_toy.cpp3d3b67a77ac758500ffd21d02b81c5f4112bd97b1583441351000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduminor change to test case 2020-03-05 15:49:11 -05003d3b67a77ac758500ffd21d02b81c5f4112bd97bminor change to test caseedittest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_Blasius_toy.cpptest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_Blasius_toy.cpp942f187c26d804f667fcb1c587f980224e4dd18c1583506441000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduminor refactoring on Blasius inflow BC params 2020-03-06 09:54:01 -0500942f187c26d804f667fcb1c587f980224e4dd18cminor refactoring on Blasius inflow BC paramsedittest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_Blasius_toy.cpptest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid0_toy.cpptest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_PointSource_stagnation_toy.cpptest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_Blasius_toy.cpptest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_toy.cppf4c356a0a6073fc0a191ad1b626fc7b17956493a1583853638000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edurename test cases 2020-03-10 10:20:38 -0500f4c356a0a6073fc0a191ad1b626fc7b17956493arename test casesaddtest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid0_toy.cppdeletetest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_toy.cppaddtest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_PointSource_stagnation_toy.cppdeletetest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_Blasius_toy.cppsrc/PanelMethod/FunctionEvalQauxv_IBL_PiecewiseConstSourcePanel_FlatPlate3D.hsrc/pde/IBL/AlgebraicEquationSet_ProjectToQauxv_PiecewiseConstSourcePanel_FlatPlate3D.hsrc/PanelMethod/PiecewiseConstSourcePanel_FlatPlate3D.hsrc/pde/IBL/AlgebraicEquationSet_ProjectToQauxv_PanelMethod.h5ee747aa8f7641e4a654d0105c3ae8326fc988401583884214000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduspeed up panel-related jacobian calculation using cached influence matrix in place of surrealized qauxifld 2020-03-10 19:50:14 -04005ee747aa8f7641e4a654d0105c3ae8326fc98840speed up panel-related jacobian calculation using cached influence matrix in place of surrealized qauxifldeditsrc/PanelMethod/PiecewiseConstSourcePanel_FlatPlate3D.heditsrc/PanelMethod/FunctionEvalQauxv_IBL_PiecewiseConstSourcePanel_FlatPlate3D.heditsrc/pde/IBL/AlgebraicEquationSet_ProjectToQauxv_PiecewiseConstSourcePanel_FlatPlate3D.heditsrc/pde/IBL/AlgebraicEquationSet_ProjectToQauxv_PanelMethod.hsrc/Discretization/Block/AlgebraicEquationSet_Block3x3_impl.h32238eecd037912390045ddc3ef6b51803793c201583884305000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadd jacobian timing for refactoring purpose 2020-03-10 19:51:45 -040032238eecd037912390045ddc3ef6b51803793c20add jacobian timing for refactoring purposeeditsrc/Discretization/Block/AlgebraicEquationSet_Block3x3_impl.hsrc/pde/IBL/BCIBL3D.htest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cppsrc/pde/IBL/BCIBL3D.cppf4cedca9c9491f81e0b17f595c2b9242ffb9fbb91583891241000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadd similar (to DBL3) Falkner-Skan inflow bc for IBL3D with non-constant inflow state. set up a tornado case with rotated xy grid to compare with DBL3 2020-03-10 21:47:21 -0400f4cedca9c9491f81e0b17f595c2b9242ffb9fbb9add similar (to DBL3) Falkner-Skan inflow bc for IBL3D with non-constant inflow state. set up a tornado case with rotated xy grid to compare with DBL3editsrc/pde/IBL/BCIBL3D.heditsrc/pde/IBL/BCIBL3D.cppaddtest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cpptest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid0_toy.cpptest/sandbox/Solve3D_Uncoupled_IBL_FlatPlate_Blasius_toy.cpp6775533c3b6cbf13bd20cab4abe107745977063f1583891261000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduminor refactoring of test cases 2020-03-10 21:47:41 -04006775533c3b6cbf13bd20cab4abe107745977063fminor refactoring of test casesedittest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid0_toy.cppedittest/sandbox/Solve3D_Uncoupled_IBL_FlatPlate_Blasius_toy.cppsrc/PanelMethod/FunctionEvalQauxv_IBL_PiecewiseConstSourcePanel_FlatPlate3D.htest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cppsrc/PanelMethod/PiecewiseConstSourcePanel_FlatPlate3D.ha871c5b77ce7aa619c9d4d1fd2c51defe3fc75931583959103000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduremove trivial zero z velocity component to speed up panel method 2020-03-11 16:38:23 -0400a871c5b77ce7aa619c9d4d1fd2c51defe3fc7593remove trivial zero z velocity component to speed up panel methodeditsrc/PanelMethod/FunctionEvalQauxv_IBL_PiecewiseConstSourcePanel_FlatPlate3D.hedittest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cppeditsrc/PanelMethod/PiecewiseConstSourcePanel_FlatPlate3D.hsrc/pde/IBL/AlgebraicEquationSet_ProjectToQauxv_PiecewiseConstSourcePanel_FlatPlate3D.h1f7853fec065375eb3452a8899178178f8d3020c1584021316000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduminor refactoring 2020-03-12 09:55:16 -04001f7853fec065375eb3452a8899178178f8d3020cminor refactoringeditsrc/pde/IBL/AlgebraicEquationSet_ProjectToQauxv_PiecewiseConstSourcePanel_FlatPlate3D.htest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cpp96eb8ea792be1bd3ab0fdb35bcb1f263e3f20e601584111948000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edutypo fix 2020-03-13 11:05:48 -040096eb8ea792be1bd3ab0fdb35bcb1f263e3f20e60typo fixedittest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cppsrc/PanelMethod/FunctionEvalQauxv_IBL_PiecewiseConstSourcePanel_FlatPlate3D.htest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cppsrc/pde/IBL/AlgebraicEquationSet_ProjectToQauxv_PiecewiseConstSourcePanel_FlatPlate3D.hsrc/PanelMethod/PiecewiseConstSourcePanel_FlatPlate3D.hdef7e47c38e6b1c81b0d9eec924d989b59b506351584127092000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduprecompute inviscid velocity for panel, which resulted in O(10) speedup in related residual calculation. fix DOF indexing in residual/jacobian precomputation 2020-03-13 15:18:12 -0400def7e47c38e6b1c81b0d9eec924d989b59b50635precompute inviscid velocity for panel, which resulted in O(10) speedup in related residual calculation. fix DOF indexing in residual/jacobian precomputationedittest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cppeditsrc/pde/IBL/AlgebraicEquationSet_ProjectToQauxv_PiecewiseConstSourcePanel_FlatPlate3D.heditsrc/PanelMethod/FunctionEvalQauxv_IBL_PiecewiseConstSourcePanel_FlatPlate3D.heditsrc/PanelMethod/PiecewiseConstSourcePanel_FlatPlate3D.hsrc/Discretization/Block/AlgebraicEquationSet_Block3x3_impl.h217a81611919ccb11739ee1934748f7bc19cda241584127208000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edudefine macro to comment off some lines for timing/refactoring 2020-03-13 15:20:08 -0400217a81611919ccb11739ee1934748f7bc19cda24define macro to comment off some lines for timing/refactoringeditsrc/Discretization/Block/AlgebraicEquationSet_Block3x3_impl.hsrc/PanelMethod/FunctionEvalQauxv_IBL_PiecewiseConstSourcePanel_FlatPlate3D.h7d474937daf8c738e6889bea7c93a7201b3152431584128957000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduminor comments 2020-03-13 15:49:17 -04007d474937daf8c738e6889bea7c93a7201b315243minor commentseditsrc/PanelMethod/FunctionEvalQauxv_IBL_PiecewiseConstSourcePanel_FlatPlate3D.htest/unit/Discretization/Block/AlgebraicEquationSet_Block3x3_Auxv_Auxi_IBL_Triangle_btest.cpptest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cpptest/unit/Discretization/Block/CMakeLists.txttest/unit/Discretization/Block/AlgebraicEquationSet_Block3x3_Auxv_Auxi_IBL_Quad_btest.cpp4b927ec3870a1890f1e1da3610a9a34de6b4b3d91584141365000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadd ping test for coupled IBL in 3x3 block system 2020-03-13 19:16:05 -04004b927ec3870a1890f1e1da3610a9a34de6b4b3d9add ping test for coupled IBL in 3x3 block systemedittest/unit/Discretization/Block/CMakeLists.txtaddtest/unit/Discretization/Block/AlgebraicEquationSet_Block3x3_Auxv_Auxi_IBL_Triangle_btest.cppedittest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cppaddtest/unit/Discretization/Block/AlgebraicEquationSet_Block3x3_Auxv_Auxi_IBL_Quad_btest.cpptest/unit/Field/Element/ElementXFieldVolume_Tetrahedron_btest.cpptest/unit/UnitGrids/XField3D_Box_Tet_X1_WakeCut.cpp34082b1c7bb8e6ddda5bac3ae610c3de757cbe3a1584654863000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduattempt to mirror tets in XField3D_Box_Tet_X1_WakeCut 2020-03-19 14:54:23 -070034082b1c7bb8e6ddda5bac3ae610c3de757cbe3aattempt to mirror tets in XField3D_Box_Tet_X1_WakeCutedittest/unit/UnitGrids/XField3D_Box_Tet_X1_WakeCut.cppedittest/unit/Field/Element/ElementXFieldVolume_Tetrahedron_btest.cpptest/unit/UnitGrids/XField3D_Box_Tet_X1_WakeCut.cppa8fad478572d4372ac41b5ad10f8034d1cb44cad1584733752000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.edureverted to original prism-split coding; remainder of code is hard-coded for the particular choice of prism splitting 2020-03-20 12:49:12 -0700a8fad478572d4372ac41b5ad10f8034d1cb44cadreverted to original prism-split coding; remainder of code is hard-coded for theedittest/unit/UnitGrids/XField3D_Box_Tet_X1_WakeCut.cppsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosure_impl.h157354c5b4477824fbfdfc612456607498a573dc1585011893000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edufix typo in Cf2 closure, although it didn't change the torpedo case results much 2020-03-23 20:04:53 -0500157354c5b4477824fbfdfc612456607498a573dcfix typo in Cf2 closure, although it didn't change the torpedo case results mucheditsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosure_impl.hsrc/LinearAlgebra/BlockLinAlg/tools/dot.htest/unit/LinearAlgebra/BlockLinAlg/VectorBlock_2_DenseVector_btest.cppc779a7142a695ff8550df57cd8adb205530d2c071585229045000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix dot for VectorBlock 2020-03-26 09:24:05 -0400c779a7142a695ff8550df57cd8adb205530d2c07Fix dot for VectorBlockeditsrc/LinearAlgebra/BlockLinAlg/tools/dot.hedittest/unit/LinearAlgebra/BlockLinAlg/VectorBlock_2_DenseVector_btest.cppsrc/Discretization/Potential_Adjoint/StabilizationNitsche_Potential_Adjoint.cppsrc/Discretization/CMakeLists.txtsrc/Discretization/Potential_Adjoint/AlgebraicEquationSet_CG_Potential_Adjoint.hCMakeLists.txtsrc/Discretization/Potential_Adjoint/IntegrandBoundaryTrace_WakeCut_CG_LIP_Adjoint.hsrc/Discretization/Potential_Adjoint/StabilizationNitsche_Potential_Adjoint.hsrc/pde/FullPotential/PDELinearizedIncompressiblePotential3D.hsrc/Discretization/Potential_Adjoint/IntegrandBoundaryFrame_CG_LIP_Adjoint.h93c14a5f84cd34aefb8e654561bca8e10e4696cc1585240529000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduadded PyDict control of wake & Kutta Nitsche parameters 2020-03-26 09:35:29 -070093c14a5f84cd34aefb8e654561bca8e10e4696ccadded PyDict control of wake & Kutta Nitsche parametersaddsrc/Discretization/Potential_Adjoint/StabilizationNitsche_Potential_Adjoint.cppaddsrc/Discretization/Potential_Adjoint/StabilizationNitsche_Potential_Adjoint.heditsrc/Discretization/CMakeLists.txteditsrc/Discretization/Potential_Adjoint/AlgebraicEquationSet_CG_Potential_Adjoint.heditsrc/pde/FullPotential/PDELinearizedIncompressiblePotential3D.heditsrc/Discretization/Potential_Adjoint/IntegrandBoundaryFrame_CG_LIP_Adjoint.heditsrc/Discretization/Potential_Adjoint/IntegrandBoundaryTrace_WakeCut_CG_LIP_Adjoint.heditCMakeLists.txttest/system/CodeConsistency/PDEmitAVSensor2D_Consistency_RANSSA_btest.cpp52082881de98216f2cf2cd8b361625f0c4e4b1af1585244773000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduAdded test of sourceCoarse and sourceFine for RANSSA with artificial viscosity. 2020-03-26 13:46:13 -040052082881de98216f2cf2cd8b361625f0c4e4b1afAdded test of sourceCoarse and sourceFine for RANSSA with artificial viscosity.edittest/system/CodeConsistency/PDEmitAVSensor2D_Consistency_RANSSA_btest.cppsrc/pde/ArtificialViscosity/AVSensor_Source2D.htest/unit/pde/ArtificialViscosity/AVSensor_Source2D_Euler_btest.cpp29e1870b667c6af472e1a48acc528934a5fb0f5e1585250646000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduAdded missing sourceCoarse and sourceFine functions from pressure gradient sensor and added unit test 2020-03-26 15:24:06 -040029e1870b667c6af472e1a48acc528934a5fb0f5eAdded missing sourceCoarse and sourceFine functions from pressure gradient sensor and added unit testedittest/unit/pde/ArtificialViscosity/AVSensor_Source2D_Euler_btest.cppeditsrc/pde/ArtificialViscosity/AVSensor_Source2D.hsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_impl.hsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_MatrixBlock_4x4_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_backsolve.hsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver.hsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_MatrixBlock_2x2_Instantiate.cppaec23154384a047c91db90f8d07b9cc251ab85391585255837000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduadded PyDict solve check option to UMFPACK; currently commented out actual check 2020-03-26 13:50:37 -0700aec23154384a047c91db90f8d07b9cc251ab8539added PyDict solve check option to UMFPACK; currently commented out actual checkeditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver.heditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_backsolve.heditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_MatrixBlock_2x2_Instantiate.cppeditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_MatrixBlock_4x4_Instantiate.cppeditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_impl.htest/unit/LinearAlgebra/BlockLinAlg/VectorBlock_2_DenseVector_btest.cppsrc/LinearAlgebra/BlockLinAlg/tools/dot.hsrc/LinearAlgebra/BlockLinAlg/VectorBlock_4.hsrc/LinearAlgebra/BlockLinAlg/VectorBlock_3.hsrc/LinearAlgebra/DenseLinAlg/tools/dot.hsrc/LinearAlgebra/SparseLinAlg/tools/dot.hsrc/LinearAlgebra/BlockLinAlg/VectorBlock_2.hsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver.htest/unit/LinearAlgebra/BlockLinAlg/VectorBlock_2_SparseVector_btest.cppsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_MatrixBlock_3x3_Instantiate.cppsrc/LinearAlgebra/BlockLinAlg/BlockLinAlg_Mul.hsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_backsolve.hce24940c6c7342576d2a4e0fe557527f21f9040a1585258214000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixes for checking the UMFPACK solve 2020-03-26 17:30:14 -0400ce24940c6c7342576d2a4e0fe557527f21f9040aFixes for checking the UMFPACK solveeditsrc/LinearAlgebra/BlockLinAlg/VectorBlock_3.heditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_MatrixBlock_3x3_Instantiate.cppedittest/unit/LinearAlgebra/BlockLinAlg/VectorBlock_2_DenseVector_btest.cppeditsrc/LinearAlgebra/BlockLinAlg/tools/dot.heditsrc/LinearAlgebra/SparseLinAlg/tools/dot.heditsrc/LinearAlgebra/BlockLinAlg/VectorBlock_2.heditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver.heditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_backsolve.heditsrc/LinearAlgebra/BlockLinAlg/VectorBlock_4.hedittest/unit/LinearAlgebra/BlockLinAlg/VectorBlock_2_SparseVector_btest.cppeditsrc/LinearAlgebra/BlockLinAlg/BlockLinAlg_Mul.heditsrc/LinearAlgebra/DenseLinAlg/tools/dot.hsrc/pde/NS/PDEEulermitAVDiffusion2D.hff2bc9ececc4c8bbb588b48d2f6f261c11959a2e1585265272000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduMissed adding PDEEulermitAVDiffusion2D.h to the commit. This file has specialized versions of sourceCoarse and sourceFine for a param that is a H-tensor and distance function. 2020-03-26 19:27:52 -0400ff2bc9ececc4c8bbb588b48d2f6f261c11959a2eMissed adding PDEEulermitAVDiffusion2D.h to the commit. This file has specialized versions of sourceCoarse and sourceFine for a param that is a H-tensor and distance function.editsrc/pde/NS/PDEEulermitAVDiffusion2D.hsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosure_impl.he6ace97679705b0ae85b0879ee849feb78308b0c1585959944000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadd a wall term to dissipation relation of Nishida's closure, although it didn't affect things much 2020-04-03 19:25:44 -0500e6ace97679705b0ae85b0879ee849feb78308b0cadd a wall term to dissipation relation of Nishida's closure, although it didn't affect things mucheditsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosure_impl.htest/sandbox/Solve2D_Coupled4x4_IBL_fx67k170_toy.cpptest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cppsrc/pde/IBL/PDEIBLSplitAmpLag2D.h2a085e1ea5fad39c7651f13dd9e18fe5185d93d91586143262000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadd a test case of fx67-k-170 airfoil 2020-04-05 22:21:02 -05002a085e1ea5fad39c7651f13dd9e18fe5185d93d9add a test case of fx67-k-170 airfoiladdtest/sandbox/Solve2D_Coupled4x4_IBL_fx67k170_toy.cppeditsrc/pde/IBL/PDEIBLSplitAmpLag2D.hedittest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cpptest/sandbox/Solve2D_Coupled4x4_IBL_fx67k170_toy.cpp322fb329b5fdb7add0548239acc87c5823c67f2c1586193805000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduminor edit to output filenames at convergence failures 2020-04-06 12:23:25 -0500322fb329b5fdb7add0548239acc87c5823c67f2cminor edit to output filenames at convergence failuresedittest/sandbox/Solve2D_Coupled4x4_IBL_fx67k170_toy.cpptest/sandbox/Solve2D_Coupled4x4_IBL_fx67k170_toy.cppb60ffde551cd811e4d93cb5c3dffc1469999b2c51586227889000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduresolve merge conflict 2020-04-06 22:51:29 -0400b60ffde551cd811e4d93cb5c3dffc1469999b2c5resolve merge conflictedittest/sandbox/Solve2D_Coupled4x4_IBL_fx67k170_toy.cpptest/sandbox/Solve2D_Coupled4x4_IBL_fx67k170_toy.cppsrc/pde/IBL/PDEIBLSplitAmpLag2D.h337efd6a3e180719ba120781fcad7b2fb69d4e371586727211000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.educhanged default flux of IBL to LF flux 2020-04-12 16:33:31 -0500337efd6a3e180719ba120781fcad7b2fb69d4e37changed default flux of IBL to LF fluxeditsrc/pde/IBL/PDEIBLSplitAmpLag2D.hedittest/sandbox/Solve2D_Coupled4x4_IBL_fx67k170_toy.cpptest/sandbox/Solve2D_Coupled4x4_IBL_fx67k170_drag_polar_toy.cpp53bc88715b28a3c02406423a2376d55b97a499961586727236000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadd a test case for drag polar 2020-04-12 16:33:56 -050053bc88715b28a3c02406423a2376d55b97a49996add a test case for drag polaraddtest/sandbox/Solve2D_Coupled4x4_IBL_fx67k170_drag_polar_toy.cpptest/sandbox/Solve2D_Coupled4x4_IBL_fx67k170_drag_polar_toy.cpp6c54de24984d598199a647d814faa2491b5624ac1586747932000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduran drag polar cases 2020-04-12 22:18:52 -05006c54de24984d598199a647d814faa2491b5624acran drag polar casesedittest/sandbox/Solve2D_Coupled4x4_IBL_fx67k170_drag_polar_toy.cppsrc/pde/IBL/PDEIBLSplitAmpLag2D.htest/sandbox/Solve2D_Coupled4x4_IBL_fx67k170_toy.cppsrc/pde/IBL/FluidModels.hsrc/pde/IBL/FluidModels.cppe2362fb6c3e06aa2d1ea4fa3d015bed26b5838ab1586875838000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edurefactored reference speed in transition model 2020-04-14 09:50:38 -0500e2362fb6c3e06aa2d1ea4fa3d015bed26b5838abrefactored reference speed in transition modeledittest/sandbox/Solve2D_Coupled4x4_IBL_fx67k170_toy.cppeditsrc/pde/IBL/FluidModels.heditsrc/pde/IBL/PDEIBLSplitAmpLag2D.heditsrc/pde/IBL/FluidModels.cpptest/sandbox/Solve2D_Coupled4x4_IBL_fx67k170_toy.cpp643d7d1915c965f67a423d7dfb3d9c66c9d527731586891342000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edutypo fix 2020-04-14 15:09:02 -0400643d7d1915c965f67a423d7dfb3d9c66c9d52773typo fixedittest/sandbox/Solve2D_Coupled4x4_IBL_fx67k170_toy.cpptest/sandbox/Solve2D_Coupled4x4_IBL_fx67k170_toy.cpp305e729fe60a1ee00e80e7d4d0afe8179a85299a1586896728000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edurename working directory 2020-04-14 15:38:48 -0500305e729fe60a1ee00e80e7d4d0afe8179a85299arename working directoryedittest/sandbox/Solve2D_Coupled4x4_IBL_fx67k170_toy.cppsrc/pde/IBL/PDEIBLSplitAmpLag2D.hf71fbc761abbd969b3874e1d1bcff5a40265c1951587073359000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edurefator characteristic speed for PTC 2020-04-16 16:42:39 -0500f71fbc761abbd969b3874e1d1bcff5a40265c195refator characteristic speed for PTCeditsrc/pde/IBL/PDEIBLSplitAmpLag2D.hsrc/pde/IBL/PDEIBLSplitAmpLag2D.h4b9271828ab534a546513d0db0e86b9c6c49cfc51587073574000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edurefator characteristic speed for PTC 2020-04-16 16:46:14 -05004b9271828ab534a546513d0db0e86b9c6c49cfc5refator characteristic speed for PTCeditsrc/pde/IBL/PDEIBLSplitAmpLag2D.htest/unit/Meshing/Metric/MetricOps_btest.cppce40573f04f9a227da9874c2824ef5abf08ddcfe1587248423000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduAdd unit tests demonstrating that the step matrix calculation is stable to scaling 2020-04-18 18:20:23 -0400ce40573f04f9a227da9874c2824ef5abf08ddcfeAdd unit tests demonstrating that the step matrix calculation is stable to scalingedittest/unit/Meshing/Metric/MetricOps_btest.cpptest/system/IO/AnalyticSolve/IBL3D_StagnationFlow_LamiBL_Triangle_nelem1d2_p1_Test.txttest/system/IO/AnalyticSolve/IBL3D_StagnationFlow_LamiBL_Triangle_nelem1d2_p4_Test.txttest/system/IO/AnalyticSolve/IBL3D_StagnationFlow_LamiBL_Triangle_nelem1d2_p3_Test.txttest/system/IO/AnalyticSolve/IBL3D_StagnationFlow_LamiBL_Triangle_nelem1d1_p1_Test.txttest/system/IO/AnalyticSolve/IBL3D_StagnationFlow_LamiBL_Triangle_nelem1d1_p3_Test.txttest/system/IO/AnalyticSolve/IBL3D_StagnationFlow_LamiBL_Triangle_nelem1d1_p2_Test.txttest/system/IO/AnalyticSolve/IBL3D_StagnationFlow_LamiBL_Triangle_nelem1d2_p2_Test.txttest/system/IO/AnalyticSolve/IBL3D_StagnationFlow_LamiBL_Triangle_nelem1d2_p0_Test.txttest/system/IO/AnalyticSolve/IBL3D_StagnationFlow_LamiBL_Triangle_nelem1d1_p0_Test.txttest/system/AnalyticSolve/AnalyticSolve_IBL3D_StagnationFlow_LamiBL_Triangle_btest.cpptest/system/IO/AnalyticSolve/IBL3D_StagnationFlow_LamiBL_Triangle_nelem1d1_p4_Test.txtfb1f0e56ebfcdc323f96e7f4b7c4555db6cc93651587437377000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduupdate pyrite files 2020-04-20 21:49:37 -0500fb1f0e56ebfcdc323f96e7f4b7c4555db6cc9365update pyrite filesedittest/system/IO/AnalyticSolve/IBL3D_StagnationFlow_LamiBL_Triangle_nelem1d1_p2_Test.txtedittest/system/IO/AnalyticSolve/IBL3D_StagnationFlow_LamiBL_Triangle_nelem1d2_p0_Test.txtedittest/system/AnalyticSolve/AnalyticSolve_IBL3D_StagnationFlow_LamiBL_Triangle_btest.cppedittest/system/IO/AnalyticSolve/IBL3D_StagnationFlow_LamiBL_Triangle_nelem1d1_p1_Test.txtedittest/system/IO/AnalyticSolve/IBL3D_StagnationFlow_LamiBL_Triangle_nelem1d1_p0_Test.txtedittest/system/IO/AnalyticSolve/IBL3D_StagnationFlow_LamiBL_Triangle_nelem1d1_p4_Test.txtedittest/system/IO/AnalyticSolve/IBL3D_StagnationFlow_LamiBL_Triangle_nelem1d2_p2_Test.txtedittest/system/IO/AnalyticSolve/IBL3D_StagnationFlow_LamiBL_Triangle_nelem1d1_p3_Test.txtedittest/system/IO/AnalyticSolve/IBL3D_StagnationFlow_LamiBL_Triangle_nelem1d2_p3_Test.txtedittest/system/IO/AnalyticSolve/IBL3D_StagnationFlow_LamiBL_Triangle_nelem1d2_p1_Test.txtedittest/system/IO/AnalyticSolve/IBL3D_StagnationFlow_LamiBL_Triangle_nelem1d2_p4_Test.txttest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_PointSource_stagnation_toy.cppsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosure_impl.h68f965bd9bcc33bccbb956cb7b9936774be36f951587486358000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edurefactor 3D IBL closure API to allow for alternative closure models 2020-04-21 11:25:58 -050068f965bd9bcc33bccbb956cb7b9936774be36f95refactor 3D IBL closure API to allow for alternative closure modelsedittest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_PointSource_stagnation_toy.cppeditsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosure_impl.hsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosure_impl.hsrc/pde/IBL/ClosureRelations_Nishida.h5e617160cf62c31c6890ca4f69c3c2d5d05581121587493028000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edusave 3D closure relations in a separate header 2020-04-21 13:17:08 -05005e617160cf62c31c6890ca4f69c3c2d5d0558112save 3D closure relations in a separate headereditsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosure_impl.haddsrc/pde/IBL/ClosureRelations_Nishida.hsrc/pde/IBL/CMakeLists.txtsrc/pde/IBL/ClosureRelations3D_Nishida.hsrc/pde/IBL/ClosureRelations_Nishida.hsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosure_impl.hsrc/pde/IBL/ClosureRelations3D_NeuralNet.cppsrc/pde/IBL/ClosureRelations3D_NeuralNet.hc1322d96c9c549f894399a24cdbbc056a4cc56671587524215000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadd neural net closure for 3D IBL 2020-04-21 21:56:55 -0500c1322d96c9c549f894399a24cdbbc056a4cc5667add neural net closure for 3D IBLeditsrc/pde/IBL/CMakeLists.txtdeletesrc/pde/IBL/ClosureRelations_Nishida.heditsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosure_impl.haddsrc/pde/IBL/ClosureRelations3D_Nishida.haddsrc/pde/IBL/ClosureRelations3D_NeuralNet.haddsrc/pde/IBL/ClosureRelations3D_NeuralNet.cpptest/sandbox/Solve2D_Coupled4x4_IBL_fx67k170_drag_polar_toy.cpp40c734fd21f5ca61421cbf6e37aed796b85ee91a1587568587000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edurun drag polar on finer grids 2020-04-22 11:16:27 -040040c734fd21f5ca61421cbf6e37aed796b85ee91arun drag polar on finer gridsedittest/sandbox/Solve2D_Coupled4x4_IBL_fx67k170_drag_polar_toy.cpptest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cpp8f5605c7645287ae6e5017fcc67bbed4f408fa691587569415000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduswitch to run on acdl desktop 2020-04-22 10:30:15 -05008f5605c7645287ae6e5017fcc67bbed4f408fa69switch to run on acdl desktopedittest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cppsrc/PanelMethod/FunctionEvalQauxv_IBL_PiecewiseConstSourcePanel_FlatPlate3D.hsrc/pde/IBL/AlgebraicEquationSet_ProjectToQauxv_PiecewiseConstSourcePanel_FlatPlate3D.htest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cpp54c9c64336d126a6cbc806f6a61077d21d089c8b1587573986000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edufix memory leak warning caused by accessing index -1 2020-04-22 11:46:26 -050054c9c64336d126a6cbc806f6a61077d21d089c8bfix memory leak warning caused by accessing index -1editsrc/PanelMethod/FunctionEvalQauxv_IBL_PiecewiseConstSourcePanel_FlatPlate3D.heditsrc/pde/IBL/AlgebraicEquationSet_ProjectToQauxv_PiecewiseConstSourcePanel_FlatPlate3D.hedittest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cpptest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cpp2461002f4fad59594f8d0f483d45686157d504781587574111000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduminor update 2020-04-22 12:48:31 -04002461002f4fad59594f8d0f483d45686157d50478minor updateedittest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cpptest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cpp9ab7c422330a1f0ca9ed73c9f76cceb1c524198d1587668908000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edumucking with PETSc for IBL3 2020-04-23 14:08:28 -05009ab7c422330a1f0ca9ed73c9f76cceb1c524198dmucking with PETSc for IBL3edittest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cppsrc/LinearAlgebra/SparseLinAlg/CMakeLists.txtsrc/Discretization/JacobianParam.hsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_MatrixBlock_3x3_Instantiate.cpp597f8971d09f15ebcc5cb8235a7cb02bc1f4bb661587678242000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduinstantiate MKL_PARDISO solver for matrix block 3x3 2020-04-23 16:44:02 -0500597f8971d09f15ebcc5cb8235a7cb02bc1f4bb66instantiate MKL_PARDISO solver for matrix block 3x3addsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_MatrixBlock_3x3_Instantiate.cppeditsrc/LinearAlgebra/SparseLinAlg/CMakeLists.txteditsrc/Discretization/JacobianParam.htest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cpp57c27f9d2e126e22d2df745d8dd137dde97780171587689436000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edutried MKL_PARDISO solver for IBL3 2020-04-23 19:50:36 -050057c27f9d2e126e22d2df745d8dd137dde9778017tried MKL_PARDISO solver for IBL3edittest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cppsrc/Adaptation/MOESS/MOESSParams.hsrc/Adaptation/MOESS/ErrorModel/ErrorModel_impl.htest/unit/Adaptation/MOESS/ReferenceStepMatrix_btest.cpp076d27112ae2a0072d3a8e5234cef656cc3d54ac1587693711000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduAdding test that Explicitly calculating the step from the metric directly is not unstable. Cases in 2D and 3D, showing stability to an AR of 2^10 in 3D, and 2^64 in 2D. 2020-04-23 22:01:51 -0400076d27112ae2a0072d3a8e5234cef656cc3d54acAdding test that Explicitly calculating the step from the metric directly is not unstable. Cases in 2D and 3D, showing stability to an AR of 2^10 in 3D, and 2^64 in 2D.editsrc/Adaptation/MOESS/MOESSParams.heditsrc/Adaptation/MOESS/ErrorModel/ErrorModel_impl.hedittest/unit/Adaptation/MOESS/ReferenceStepMatrix_btest.cppsrc/Field/Field_impl.hsrc/UserInterfaces/LIPSolver.cpp62930bd9bae94b96301f101af2e6ce14f53cea031587696038000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduminor typo fix 2020-04-23 21:40:38 -050062930bd9bae94b96301f101af2e6ce14f53cea03minor typo fixeditsrc/Field/Field_impl.heditsrc/UserInterfaces/LIPSolver.cppsrc/LinearAlgebra/AlgebraicEquationSetBase.hsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosure_impl.h01ec89a731549c5c27b004ea81b60d6cba1ac38e1587766593000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edufix formatting 2020-04-24 17:16:33 -050001ec89a731549c5c27b004ea81b60d6cba1ac38efix formattingeditsrc/LinearAlgebra/AlgebraicEquationSetBase.heditsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosure_impl.htest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cppsrc/pde/IBL/BCIBL3D.hsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective.hsrc/pde/IBL/BCIBL3D.cppsrc/Discretization/Galerkin/IntegrandBoundaryTrace_mitLG_Galerkin_manifold_IBL3D.hsrc/pde/NDConvert/BCNDConvertSpace3D.h43b002bc9e605a9e3bbbfb3b47b521a23efc070e1587788073000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadd mitLG BC for IBL3 2020-04-24 23:14:33 -050043b002bc9e605a9e3bbbfb3b47b521a23efc070eadd mitLG BC for IBL3editsrc/pde/IBL/BCIBL3D.cppeditsrc/pde/IBL/BCIBL3D.haddsrc/Discretization/Galerkin/IntegrandBoundaryTrace_mitLG_Galerkin_manifold_IBL3D.hedittest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cppeditsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective.heditsrc/pde/NDConvert/BCNDConvertSpace3D.hsrc/pde/IBL/ClosureRelations3D_Nishida.h155c16e4273a43cdc946b91fcb725c89d2dbc75f1587852961000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduminor refactoring 2020-04-25 17:16:01 -0500155c16e4273a43cdc946b91fcb725c89d2dbc75fminor refactoringeditsrc/pde/IBL/ClosureRelations3D_Nishida.htest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cpp7eb2a489ac31c5c000659e8f2607241cf22823461587853242000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduswitch to the same input parameters as DBL3 2020-04-25 17:20:42 -05007eb2a489ac31c5c000659e8f2607241cf2282346switch to the same input parameters as DBL3edittest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cppsrc/pde/IBL/PDEIBL3D.h776bf6da78757846b75b772bdf5627eae13bb9461587859834000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadd LF flux to IBL3 2020-04-25 19:10:34 -0500776bf6da78757846b75b772bdf5627eae13bb946add LF flux to IBL3editsrc/pde/IBL/PDEIBL3D.htest/unit/Adaptation/MOESS/AnisotropicStepCalculation_btest.cppsrc/Adaptation/MOESS/ErrorModel/ErrorModel_impl.htest/unit/Adaptation/MOESS/ErrorModel_btest.cpp32adfeff9ed455fbe6cd2cfdd62e2562b70bac0c1587944769000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduChanges to ErrorModel to allow for the new exact nodal metric calculation 2020-04-26 19:46:09 -040032adfeff9ed455fbe6cd2cfdd62e2562b70bac0cChanges to ErrorModel to allow for the new exact nodal metric calculationeditsrc/Adaptation/MOESS/ErrorModel/ErrorModel_impl.hedittest/unit/Adaptation/MOESS/ErrorModel_btest.cppaddtest/unit/Adaptation/MOESS/AnisotropicStepCalculation_btest.cpptest/unit/Adaptation/MOESS/AnisotropicStepCalculation_btest.cpptest/unit/Adaptation/MOESS/ErrorModel_btest.cppsrc/Adaptation/MOESS/ErrorModel/ErrorModel_impl.h5989daf04a26f8eedbbfa583315ba813dc45644c1587944856000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduChanges to ErrorModel to allow for the new exact nodal metric calculation 2020-04-26 19:47:36 -04005989daf04a26f8eedbbfa583315ba813dc45644cChanges to ErrorModel to allow for the new exact nodal metric calculationedittest/unit/Adaptation/MOESS/ErrorModel_btest.cppaddtest/unit/Adaptation/MOESS/AnisotropicStepCalculation_btest.cppeditsrc/Adaptation/MOESS/ErrorModel/ErrorModel_impl.htest/sandbox/Solve3D_VMSDBR2_NavierStokes_DeltaWing_toy.cppbe00d3c2da3ccb0ee0d3f03a8df9c6deae186c461587945672000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edupre merge add.... wth? 2020-04-26 20:01:12 -0400be00d3c2da3ccb0ee0d3f03a8df9c6deae186c46pre merge add.... wth?addtest/sandbox/Solve3D_VMSDBR2_NavierStokes_DeltaWing_toy.cpptest/sandbox/Solve3D_Uncoupled_IBL_FlatPlate_Blasius_toy.cpptest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cppa604a2a496052a298099fe4fb9bddcb43b9851671588192359000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadd Dirichlet mitLG inflow BC to a Blasius flow test case 2020-04-29 15:32:39 -0500a604a2a496052a298099fe4fb9bddcb43b985167add Dirichlet mitLG inflow BC to a Blasius flow test caseedittest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cppedittest/sandbox/Solve3D_Uncoupled_IBL_FlatPlate_Blasius_toy.cpptest/unit/Adaptation/MOESS/ErrorModel_btest.cpp0d9a670cfa469b922cf50ab651faeb27911468961588204737000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduJenkins fix 2020-04-29 19:58:57 -04000d9a670cfa469b922cf50ab651faeb2791146896Jenkins fixedittest/unit/Adaptation/MOESS/ErrorModel_btest.cppsrc/Adaptation/MOESS/ErrorModel/ErrorModel_impl.htest/unit/Adaptation/MOESS/ErrorModel_btest.cpp3ab2ac3c5389d5ba7ccd566d6451ed40b6337b991588296303000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edureverting to the develop branch of ErrorModel 2020-04-30 21:25:03 -04003ab2ac3c5389d5ba7ccd566d6451ed40b6337b99reverting to the develop branch of ErrorModeleditsrc/Adaptation/MOESS/ErrorModel/ErrorModel_impl.hedittest/unit/Adaptation/MOESS/ErrorModel_btest.cpptest/sandbox/Solve3D_VMSDBR2_NavierStokes_DeltaWing_toy.cppf6c535c3eba7585d22e68d39d14584e6c81e19961588297312000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edufixes to case 2020-04-30 21:41:52 -0400f6c535c3eba7585d22e68d39d14584e6c81e1996fixes to caseedittest/sandbox/Solve3D_VMSDBR2_NavierStokes_DeltaWing_toy.cpptest/sandbox/Solve3D_VMSDBR2_NavierStokes_DeltaWing_toy.cpp17d4e340636060313c838e217b511f7ae3b470a11588297458000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edufixes to case 2020-04-30 21:44:18 -040017d4e340636060313c838e217b511f7ae3b470a1fixes to caseedittest/sandbox/Solve3D_VMSDBR2_NavierStokes_DeltaWing_toy.cppsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosureFourEqn_impl.hsrc/pde/IBL/ThicknessesCoefficients3D.hsrc/pde/IBL/PDEIBL3D_FourEqn.hsrc/pde/IBL/IBLVarDataType3D.hsrc/pde/IBL/CMakeLists.txtsrc/pde/IBL/VarInterpret3D.hsrc/pde/IBL/ClosureRelationsFourEqn3D_NeuralNet.hsrc/pde/IBL/ClosureRelationsFourEqn3D_NeuralNet.cppsrc/pde/IBL/IBL_Traits.h93d6c47951e731cb3879b35cba15adae8fd3b3cd1588308313000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduintermediate commit: added 4-equation neural net closure model. working on 4-equation IBL3D pde class 2020-04-30 23:45:13 -050093d6c47951e731cb3879b35cba15adae8fd3b3cdintermediate commit: added 4-equation neural net closure model. working on 4-equation IBL3D pde classeditsrc/pde/IBL/ThicknessesCoefficients3D.heditsrc/pde/IBL/CMakeLists.txtaddsrc/pde/IBL/PDEIBL3D_FourEqn.heditsrc/pde/IBL/VarInterpret3D.heditsrc/pde/IBL/IBLVarDataType3D.haddsrc/pde/IBL/ClosureRelationsFourEqn3D_NeuralNet.haddsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosureFourEqn_impl.haddsrc/pde/IBL/ClosureRelationsFourEqn3D_NeuralNet.cppeditsrc/pde/IBL/IBL_Traits.hsrc/pde/IBL/PDEIBL3D_FourEqn.h3808fea2ff5dceecf2e958f924554e5652ed11161588311672000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduremove extraneous tamplate keyword 2020-05-01 00:41:12 -05003808fea2ff5dceecf2e958f924554e5652ed1116remove extraneous tamplate keywordeditsrc/pde/IBL/PDEIBL3D_FourEqn.htest/sandbox/Adapt3D_VMSDBR2_NavierStokes_DeltaWing_Chain_toy.cpptest/sandbox/Solve3D_VMSDBR2_NavierStokes_DeltaWing_toy.cppsrc/Adaptation/MOESS/SolverInterface_VMSD_BR2.htest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_Chain_toy.cppc108989b0d7b7ce70d807ed9fab0ce296461d7ac1588537319000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduVarious changes for arthur: Commented the adjoint_wo_p things from SolverInterface_VMSD_BR2, reducing the memory reqs. Made the Deltawing adapts more uniform and fit with the plan. Added the Solve case for the VMSD delta wing. 2020-05-03 16:21:59 -0400c108989b0d7b7ce70d807ed9fab0ce296461d7acVarious changes for arthur: Commented the adjoint_wo_p things from SolverInterface_VMSD_BR2, reducing the memory reqs. Made the Deltawing adapts more uniform and fit with the plan. Added the Solve case for the VMSD delta wing.editsrc/Adaptation/MOESS/SolverInterface_VMSD_BR2.hedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_Chain_toy.cppedittest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppedittest/sandbox/Solve3D_VMSDBR2_NavierStokes_DeltaWing_toy.cppedittest/sandbox/Adapt3D_VMSDBR2_NavierStokes_DeltaWing_Chain_toy.cppsrc/pde/NDConvert/PDENDConvertSpace3D.hsrc/pde/IBL/PDEIBL3D_FourEqn.hba6df4e094d82767dae5c9dc5bb99348ec6398771588632759000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadded soruce terms for the lateral curvature equation of IBL3 2020-05-04 17:52:39 -0500ba6df4e094d82767dae5c9dc5bb99348ec639877added soruce terms for the lateral curvature equation of IBL3editsrc/pde/NDConvert/PDENDConvertSpace3D.heditsrc/pde/IBL/PDEIBL3D_FourEqn.hsrc/pde/IBL/PDEIBL3D_FourEqn.h12d129249a3f2b9abf6c566fba6f379daa9554f11588640526000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduremoved re-definition 2020-05-04 20:02:06 -050012d129249a3f2b9abf6c566fba6f379daa9554f1removed re-definitioneditsrc/pde/IBL/PDEIBL3D_FourEqn.hsrc/pde/IBL/PDEIBL3D.hsrc/pde/IBL/PDEIBL3D_FourEqn.hsrc/pde/IBL/PDEIBL3D.cpptest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cppsrc/pde/IBL/PDEIBLFourEqn3D.htest/sandbox/Solve3D_Coupled3x3_IBLFourEqn_FlatPlate_torpedo_agrid45_toy.cppsrc/pde/IBL/BCIBL3D.hsrc/pde/IBL/IBL_Traits.hsrc/pde/IBL/BCIBL3D.cppe25de194280f8838763d98fc2e50c9669310edb61588797367000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edurefactored and added PDE and BC for four-equation 3D IBL class. added a starting point for torpedo case 2020-05-06 15:36:07 -0500e25de194280f8838763d98fc2e50c9669310edb6refactored and added PDE and BC for four-equation 3D IBL class. added a starting point for torpedo casedeletesrc/pde/IBL/PDEIBL3D_FourEqn.heditsrc/pde/IBL/PDEIBL3D.heditsrc/pde/IBL/BCIBL3D.haddsrc/pde/IBL/PDEIBLFourEqn3D.haddtest/sandbox/Solve3D_Coupled3x3_IBLFourEqn_FlatPlate_torpedo_agrid45_toy.cppeditsrc/pde/IBL/PDEIBL3D.cppeditsrc/pde/IBL/BCIBL3D.cppedittest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cppeditsrc/pde/IBL/IBL_Traits.hsrc/pde/IBL/BCIBL3D.hsrc/pde/IBL/ElementProjectionOutputIBL3D.htest/sandbox/Solve3D_Coupled3x3_IBLFourEqn_FlatPlate_torpedo_agrid45_toy.cpp80aa0aba110664989ef335f092c27954036454ed1588798950000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduseparated classes of 3D IBL and IBLFourEqn 2020-05-06 16:02:30 -050080aa0aba110664989ef335f092c27954036454edseparated classes of 3D IBL and IBLFourEqneditsrc/pde/IBL/BCIBL3D.heditsrc/pde/IBL/ElementProjectionOutputIBL3D.hedittest/sandbox/Solve3D_Coupled3x3_IBLFourEqn_FlatPlate_torpedo_agrid45_toy.cppsrc/Discretization/Galerkin/IntegrandInteriorTrace_Galerkin_manifold_IBL3D.hsrc/pde/IBL/PDEIBLFourEqn3D.hsrc/Discretization/Galerkin/IntegrandBoundaryTrace_None_Galerkin_manifold_IBL3D.hsrc/Discretization/Galerkin/IntegrandBoundaryTrace_Flux_mitState_Galerkin_manifold_IBL3D.hsrc/Discretization/Galerkin/IntegrandCell_Galerkin_manifold_IBL3D.h48b5bfa5678f2deadfffff521d12cb18d9908abb1588800407000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edugeneralized templates in IBL3-related integrands 2020-05-06 16:26:47 -050048b5bfa5678f2deadfffff521d12cb18d9908abbgeneralized templates in IBL3-related integrandseditsrc/Discretization/Galerkin/IntegrandBoundaryTrace_Flux_mitState_Galerkin_manifold_IBL3D.heditsrc/Discretization/Galerkin/IntegrandInteriorTrace_Galerkin_manifold_IBL3D.heditsrc/pde/IBL/PDEIBLFourEqn3D.heditsrc/Discretization/Galerkin/IntegrandBoundaryTrace_None_Galerkin_manifold_IBL3D.heditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_manifold_IBL3D.hsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppsrc/Field/FieldArea_DG_BoundaryTrace_Instantiate_3D.cppsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_MatrixBlock_3x3_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_MatrixBlock_3x3_Instantiate.cppsrc/pde/IBL/CMakeLists.txtsrc/Field/FieldLinesearch/FieldLinesearch_Area_Instantiate.cppsrc/Field/output_Tecplot/output_Tecplot_FieldArea.cppsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_3x3_Instantiate.cppsrc/NonLinearSolver/LineUpdate/HalvingSearchLineUpdate_MatrixBlock_3x3_Instantiate.cppsrc/Field/FieldArea_DG_Cell_Instantiate_3D.cppsrc/pde/IBL/ThicknessesCoefficients3D.hsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosureFourEqn.cppsrc/NonLinearSolver/NewtonSolver_MatrixBlock_3x3_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/Krylov/FGMRES_MatrixBlock_3x3_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/ScalarMatrix_CRS_int.cppsrc/Field/FieldArea_Instantiate_3D.cppb2bdb87650fe439a31b7e14ce0ddfc2f6644d64c1588814366000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadded instantiations for four-equation 3D IBL 2020-05-06 20:19:26 -0500b2bdb87650fe439a31b7e14ce0ddfc2f6644d64cadded instantiations for four-equation 3D IBLeditsrc/LinearAlgebra/SparseLinAlg/ScalarMatrix_CRS_int.cppeditsrc/Field/FieldLinesearch/FieldLinesearch_Area_Instantiate.cppeditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_3x3_Instantiate.cppeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppeditsrc/Field/FieldArea_DG_Cell_Instantiate_3D.cppaddsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosureFourEqn.cppeditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_MatrixBlock_3x3_Instantiate.cppeditsrc/NonLinearSolver/NewtonSolver_MatrixBlock_3x3_Instantiate.cppeditsrc/LinearAlgebra/SparseLinAlg/Krylov/FGMRES_MatrixBlock_3x3_Instantiate.cppeditsrc/pde/IBL/CMakeLists.txteditsrc/pde/IBL/ThicknessesCoefficients3D.heditsrc/Field/FieldArea_Instantiate_3D.cppeditsrc/Field/output_Tecplot/output_Tecplot_FieldArea.cppeditsrc/NonLinearSolver/LineUpdate/HalvingSearchLineUpdate_MatrixBlock_3x3_Instantiate.cppeditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_MatrixBlock_3x3_Instantiate.cppeditsrc/Field/FieldArea_DG_BoundaryTrace_Instantiate_3D.cppsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_MatrixBlock_3x3_Instantiate.cpptest/sandbox/Solve3D_Coupled3x3_IBLFourEqn_FlatPlate_torpedo_agrid45_toy.cpp1d09d6571745ab932004b3e9217889a7e25840ae1588815213000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edufixed instantiation typo 2020-05-06 20:33:33 -05001d09d6571745ab932004b3e9217889a7e25840aefixed instantiation typoeditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_MatrixBlock_3x3_Instantiate.cppedittest/sandbox/Solve3D_Coupled3x3_IBLFourEqn_FlatPlate_torpedo_agrid45_toy.cppsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosureFourEqn_impl.htest/sandbox/Solve3D_Coupled3x3_IBLFourEqn_FlatPlate_torpedo_agrid45_toy.cpp0400c45b1d297e84d52e6e0b6042e5506495398a1588816401000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduturned on verbose linesearch printout 2020-05-06 20:53:21 -05000400c45b1d297e84d52e6e0b6042e5506495398aturned on verbose linesearch printouteditsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosureFourEqn_impl.hedittest/sandbox/Solve3D_Coupled3x3_IBLFourEqn_FlatPlate_torpedo_agrid45_toy.cpptest/sandbox/Solve3D_Uncoupled_IBLFourEqn_FlatPlate_Blasius_toy.cppsrc/pde/IBL/PDEIBLFourEqn3D.h454538c3e59c2e90f4b7fa87da525f77c5d2c3351588818016000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadded a visous-only Blasius case for 4-equation 3D IBL. added a missing include 2020-05-06 21:20:16 -0500454538c3e59c2e90f4b7fa87da525f77c5d2c335added a visous-only Blasius case for 4-equation 3D IBL. added a missing includeeditsrc/pde/IBL/PDEIBLFourEqn3D.haddtest/sandbox/Solve3D_Uncoupled_IBLFourEqn_FlatPlate_Blasius_toy.cppsrc/Field/Element/ElementXFieldArea_Instantiate_3D.cpptest/unit/Field/Element/ElementXFieldAreaBase_Triangle_btest.cpp56606daf1be0d0e3bf0195611eb55d006238d72e1588886612000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edurefactored reference coordinate gradient for speedup. add/edit comments for clarity 2020-05-07 16:23:32 -050056606daf1be0d0e3bf0195611eb55d006238d72erefactored reference coordinate gradient for speedup. add/edit comments for clarityedittest/unit/Field/Element/ElementXFieldAreaBase_Triangle_btest.cppeditsrc/Field/Element/ElementXFieldArea_Instantiate_3D.cppsrc/pde/IBL/PDEIBLFourEqn3D.hf8cfafeb2af182cabbca7ca4bd57a5c28921633f1588888516000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edutypo fix: gradqe*E_qesq. minor edits 2020-05-07 16:55:16 -0500f8cfafeb2af182cabbca7ca4bd57a5c28921633ftypo fix: gradqe*E_qesq. minor editseditsrc/pde/IBL/PDEIBLFourEqn3D.htest/unit/Field/Element/ElementXFieldAreaBase_Triangle_btest.cpp028288593f69a697b85d514987f2ce1b2427eafb1588891110000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduturned off printout in unit testing 2020-05-07 17:38:30 -0500028288593f69a697b85d514987f2ce1b2427eafbturned off printout in unit testingedittest/unit/Field/Element/ElementXFieldAreaBase_Triangle_btest.cppsrc/pde/IBL/ClosureRelationsFourEqn3D_NeuralNet.hsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosureFourEqn_impl.hcf00a132cadcd5ca0c38585987195b39898ea7451588900894000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.educosmetic changes 2020-05-07 20:21:34 -0500cf00a132cadcd5ca0c38585987195b39898ea745cosmetic changeseditsrc/pde/IBL/ClosureRelationsFourEqn3D_NeuralNet.heditsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosureFourEqn_impl.hsrc/pde/IBL/ClosureRelationsFourEqn3D_NeuralNet.hsrc/pde/IBL/ClosureRelations3D_NeuralNet.h8257fefa62aac65d860f70f032da8340da1828671588941545000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edurefactored neural net closure models: H22, Hd1, Hc2 2020-05-08 07:39:05 -05008257fefa62aac65d860f70f032da8340da182867refactored neural net closure models: H22, Hd1, Hc2editsrc/pde/IBL/ClosureRelations3D_NeuralNet.heditsrc/pde/IBL/ClosureRelationsFourEqn3D_NeuralNet.hsrc/pde/IBL/ElementProjectionOutputIBL3D.hsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatrixD_InverseLU_Real_Instantiate.cppsrc/Field/FieldArea_DG_Cell_Instantiate_3D.cppsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatMul/MatMul_Native_Real.cppsrc/Field/FieldArea_Instantiate_3D.cppsrc/Field/output_Tecplot/output_Tecplot_FieldArea.cppcbece85e19630d5aa23b1dc7f34ee9b0e5474fb21588944718000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadded output for four-equation 3D IBL 2020-05-08 08:31:58 -0500cbece85e19630d5aa23b1dc7f34ee9b0e5474fb2added output for four-equation 3D IBLeditsrc/Field/FieldArea_Instantiate_3D.cppeditsrc/Field/FieldArea_DG_Cell_Instantiate_3D.cppeditsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatMul/MatMul_Native_Real.cppeditsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatrixD_InverseLU_Real_Instantiate.cppeditsrc/pde/IBL/ElementProjectionOutputIBL3D.heditsrc/Field/output_Tecplot/output_Tecplot_FieldArea.cppsrc/pde/TCNE/Q1DTCNEConservative.htest/unit/pde/TCNE/Q1DConservative_btest.cpptest/unit/pde/TCNE/TCNEGasModel_StatMech_btest.cppsrc/pde/TCNE/BCTCNEEuler1D.cppsrc/pde/TCNE/CMakeLists.txttest/unit/pde/TCNE/Q1DConservative_btest_smtemp.cppsrc/pde/TCNE/TCNEGasModel_Perfect.cppsrc/pde/TCNE/PDETCNEEuler1D.hsrc/pde/TCNE/TraitsTCNEEuler.htest/unit/pde/TCNE/Q1DConservative_btest_tempname.cppsrc/pde/TCNE/TCNEGasModel_StatMech.cppsrc/pde/TCNE/Q1DTCNEConservative.cppsrc/pde/TCNE/TCNEChemistryModels.cppsrc/pde/TCNE/TCNEChemistryModels.htest/unit/pde/TCNE/PDETCNEEuler1D_btest.cppsrc/pde/TCNE/TCNEGasModel_CurveFit.htest/unit/pde/TCNE/TCNEChemistryModels_btest.cppsrc/pde/TCNE/TCNEGasModel_StatMech.hsrc/pde/TCNE/TCNEChemistryDataImport.cppsrc/pde/TCNE/TCNEChemistryDataImport.htest/unit/pde/TCNE/TCNEChemistryDataImport_btest.cpptest/unit/pde/TCNE/BCTCNEEuler1D_btest.cpp0ccc173dba5b80979508fdc5f4417f3ab0d2a8c71589225740000https://acdl.mit.edu/csi/user/ksaboksaboksabo@mit.eduunit tests and associated modifications 2020-05-11 12:35:40 -07000ccc173dba5b80979508fdc5f4417f3ab0d2a8c7unit tests and associated modificationsaddtest/unit/pde/TCNE/TCNEChemistryDataImport_btest.cppaddsrc/pde/TCNE/TCNEChemistryDataImport.cppeditsrc/pde/TCNE/TCNEGasModel_StatMech.cppaddtest/unit/pde/TCNE/Q1DConservative_btest_smtemp.cppeditsrc/pde/TCNE/TCNEGasModel_CurveFit.heditsrc/pde/TCNE/Q1DTCNEConservative.heditsrc/pde/TCNE/TCNEChemistryModels.cppaddtest/unit/pde/TCNE/TCNEChemistryModels_btest.cppeditsrc/pde/TCNE/Q1DTCNEConservative.cppeditsrc/pde/TCNE/PDETCNEEuler1D.hedittest/unit/pde/TCNE/BCTCNEEuler1D_btest.cppeditsrc/pde/TCNE/TCNEGasModel_StatMech.haddtest/unit/pde/TCNE/Q1DConservative_btest_tempname.cppeditsrc/pde/TCNE/BCTCNEEuler1D.cppeditsrc/pde/TCNE/CMakeLists.txteditsrc/pde/TCNE/TCNEChemistryModels.heditsrc/pde/TCNE/TCNEGasModel_Perfect.cppeditsrc/pde/TCNE/TraitsTCNEEuler.hedittest/unit/pde/TCNE/PDETCNEEuler1D_btest.cppdeletetest/unit/pde/TCNE/Q1DConservative_btest.cppaddsrc/pde/TCNE/TCNEChemistryDataImport.haddtest/unit/pde/TCNE/TCNEGasModel_StatMech_btest.cppsrc/PanelMethod/ProjectToQauxi_IBL3D.h02cd16526cd0ae14c14df67caddeeba93ec3929a1589296100000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edufixed auxi equation (wall transpiration): previous mass flux missed crossflow component 2020-05-12 10:08:20 -050002cd16526cd0ae14c14df67caddeeba93ec3929afixed auxi equation (wall transpiration): previous mass flux missed crossflow componenteditsrc/PanelMethod/ProjectToQauxi_IBL3D.hsrc/PanelMethod/ProjectToQauxi_IBL3D.htest/unit/PanelMethod/ProjectToQauxi_IBL3D_btest.cpp453d950547e999f8427c3162f241f7b856bf0c1d1589320254000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduprevious fix to wall transpiration (auxi equation) didn't fix. it is now fixed. added unit test 2020-05-12 16:50:54 -0500453d950547e999f8427c3162f241f7b856bf0c1dprevious fix to wall transpiration (auxi equation) didn't fix. it is now fixed. added unit testeditsrc/PanelMethod/ProjectToQauxi_IBL3D.haddtest/unit/PanelMethod/ProjectToQauxi_IBL3D_btest.cpptest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cpptest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_PointSource_stagnation_toy.cppsrc/pde/IBL/PDEIBLFourEqn3D.htest/sandbox/Solve3D_Coupled3x3_IBLFourEqn_FlatPlate_torpedo_agrid45_toy.cpptest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_RadialStagnationFlow_toy.cppa662ef0cec6d80d569e1c18f94253be62c01a9381589322162000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduminor tweak 2020-05-12 17:22:42 -0500a662ef0cec6d80d569e1c18f94253be62c01a938minor tweakaddtest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_RadialStagnationFlow_toy.cppedittest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cppedittest/sandbox/Solve3D_Coupled3x3_IBLFourEqn_FlatPlate_torpedo_agrid45_toy.cppeditsrc/pde/IBL/PDEIBLFourEqn3D.hdeletetest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_PointSource_stagnation_toy.cpptest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cppsrc/pde/IBL/PDEIBLFourEqn3D.hsrc/pde/IBL/PDEIBL3D.htest/sandbox/Solve3D_Coupled3x3_IBLFourEqn_FlatPlate_torpedo_agrid45_toy.cpp0a23fbfcd8cb3af2a67d482ede51be47294572731589467002000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduminor cleanup 2020-05-14 09:36:42 -05000a23fbfcd8cb3af2a67d482ede51be4729457273minor cleanupedittest/sandbox/Solve3D_Coupled3x3_IBLFourEqn_FlatPlate_torpedo_agrid45_toy.cppeditsrc/pde/IBL/PDEIBLFourEqn3D.heditsrc/pde/IBL/PDEIBL3D.hedittest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cppsrc/pde/IBL/ElementProjectionOutputIBL3D.hsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatrixD_InverseLU_Real_Instantiate.cppsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatMul/MatMul_Native_Real.cppsrc/Field/FieldArea_DG_Cell_Instantiate_3D.cppsrc/Field/FieldArea_Instantiate_3D.cppsrc/Field/output_Tecplot/output_Tecplot_FieldArea.cpp4a248391914c283ff8592a3eae3ce62ce091f06a1589482067000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadd velocity gradient output to IBL 2020-05-14 13:47:47 -05004a248391914c283ff8592a3eae3ce62ce091f06aadd velocity gradient output to IBLeditsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatMul/MatMul_Native_Real.cppeditsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatrixD_InverseLU_Real_Instantiate.cppeditsrc/Field/output_Tecplot/output_Tecplot_FieldArea.cppeditsrc/Field/FieldArea_DG_Cell_Instantiate_3D.cppeditsrc/Field/FieldArea_Instantiate_3D.cppeditsrc/pde/IBL/ElementProjectionOutputIBL3D.hsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppf936fcc16dd0896332c28c0e9867111cbce95eb21589665549000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadd instantiation 2020-05-16 16:45:49 -0500f936fcc16dd0896332c28c0e9867111cbce95eb2add instantiationeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cpptest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cpptest/sandbox/Solve3D_Coupled3x3_IBLFourEqn_FlatPlate_torpedo_agrid45_toy.cppsrc/pde/IBL/ClosureRelationsFourEqn3D_NeuralNet.hsrc/pde/IBL/ClosureRelations3D_NeuralNet.ha738dbdc2413fdef35e40ed9ff9e8284c2f411531589665616000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadded IBL3 closure relations in the form of analytic formulae 2020-05-16 16:46:56 -0500a738dbdc2413fdef35e40ed9ff9e8284c2f41153added IBL3 closure relations in the form of analytic formulaeeditsrc/pde/IBL/ClosureRelations3D_NeuralNet.hedittest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cppeditsrc/pde/IBL/ClosureRelationsFourEqn3D_NeuralNet.hedittest/sandbox/Solve3D_Coupled3x3_IBLFourEqn_FlatPlate_torpedo_agrid45_toy.cpptest/unit/pde/TCNE/Q1DConservative_btest.cpp86ff8fa0b7c5cc709e3167bf8d5d0296749a0e361589994076000https://acdl.mit.edu/csi/user/ksaboksaboksabo@mit.edutested something with git (still learning this thing) 2020-05-20 10:01:16 -070086ff8fa0b7c5cc709e3167bf8d5d0296749a0e36tested something with git (still learning this thing)addtest/unit/pde/TCNE/Q1DConservative_btest.cppsrc/pde/TCNE/Q1DTCNEConservative.htest/unit/pde/TCNE/TCNEGasModel_StatMech_btest.cppsrc/pde/TCNE/TCNEChemistryModels.hsrc/pde/TCNE/TCNEGasModel_StatMech.htest/unit/pde/TCNE/TCNEChemistryModels_btest.cpped5495dc7b873be21af767c62ae9d9471e526ce81590006301000https://acdl.mit.edu/csi/user/ksaboksaboksabo@mit.edusalt deposit #1 (updated files I accidentally erased...) 2020-05-20 13:25:01 -0700ed5495dc7b873be21af767c62ae9d9471e526ce8salt deposit #1 (updated files I accidentally erased...)editsrc/pde/TCNE/TCNEGasModel_StatMech.hedittest/unit/pde/TCNE/TCNEChemistryModels_btest.cppedittest/unit/pde/TCNE/TCNEGasModel_StatMech_btest.cppeditsrc/pde/TCNE/TCNEChemistryModels.heditsrc/pde/TCNE/Q1DTCNEConservative.hsrc/pde/IBL/ClosureRelationsFourEqn3D_NeuralNet.hsrc/pde/IBL/NeuralNet_tools.hsrc/pde/IBL/ClosureRelations3D_NeuralNet.h04a32050228204c4b07c72b3cd36f2b8baec748d1590010922000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edurefactored neural net closure implementation 2020-05-20 16:42:02 -050004a32050228204c4b07c72b3cd36f2b8baec748drefactored neural net closure implementationaddsrc/pde/IBL/NeuralNet_tools.heditsrc/pde/IBL/ClosureRelations3D_NeuralNet.heditsrc/pde/IBL/ClosureRelationsFourEqn3D_NeuralNet.htest/unit/pde/TCNE/Q1DConservative_btest.cppsrc/pde/TCNE/Q1DTCNEConservative.hsrc/pde/TCNE/PDETCNEEuler1D.h92b08a47d33437001f4930681149719aec1712971590017519000https://acdl.mit.edu/csi/user/ksaboksaboksabo@mit.edurecoded jacobianMasterState method, still need to test it 2020-05-20 16:31:59 -070092b08a47d33437001f4930681149719aec171297recoded jacobianMasterState method, still need to test iteditsrc/pde/TCNE/PDETCNEEuler1D.hedittest/unit/pde/TCNE/Q1DConservative_btest.cppeditsrc/pde/TCNE/Q1DTCNEConservative.hsrc/pde/IBL/ClosureRelationsFourEqn3D_CurveFit.hsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosureFourEqn_impl.hsrc/PanelMethod/PiecewiseConstSourcePanel_FlatPlate3D.hc90cf5d47d5e234bd9018d03ff36752222494b711590027110000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadded a set of IBL3 closure models based on analytic formulae 2020-05-20 21:11:50 -0500c90cf5d47d5e234bd9018d03ff36752222494b71added a set of IBL3 closure models based on analytic formulaeeditsrc/PanelMethod/PiecewiseConstSourcePanel_FlatPlate3D.haddsrc/pde/IBL/ClosureRelationsFourEqn3D_CurveFit.heditsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosureFourEqn_impl.hsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosureFourEqn_impl.htest/sandbox/Solve3D_Coupled3x3_IBLFourEqn_FlatPlate_torpedo_agrid45_toy.cppsrc/pde/IBL/ClosureRelationsFourEqn3D_CurveFit.hsrc/pde/IBL/ClosureRelationsFourEqn3D_NeuralNet.h11c263632ec4f89ef480c4a26b830f616f6431e11590029629000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edurestored four-equation neural net closure to its original working state 2020-05-20 21:53:49 -050011c263632ec4f89ef480c4a26b830f616f6431e1restored four-equation neural net closure to its original working stateeditsrc/pde/IBL/ClosureRelationsFourEqn3D_CurveFit.heditsrc/pde/IBL/ClosureRelationsFourEqn3D_NeuralNet.heditsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosureFourEqn_impl.hedittest/sandbox/Solve3D_Coupled3x3_IBLFourEqn_FlatPlate_torpedo_agrid45_toy.cppsrc/pde/IBL/ClosureRelationsFourEqn3D_CurveFit.hsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosureFourEqn_impl.htest/sandbox/Solve3D_Coupled3x3_IBLFourEqn_FlatPlate_torpedo_agrid45_toy.cppad791194a60cceb7719ba0df0dbf09903b66953c1590031315000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduswitch to using 4-equation IBL3 closure based on analytic formulae. results are similar or slightly better than neural net closure 2020-05-20 22:21:55 -0500ad791194a60cceb7719ba0df0dbf09903b66953cswitch to using 4-equation IBL3 closure based on analytic formulae. results are similar or slightly better than neural net closureedittest/sandbox/Solve3D_Coupled3x3_IBLFourEqn_FlatPlate_torpedo_agrid45_toy.cppeditsrc/pde/IBL/ClosureRelationsFourEqn3D_CurveFit.heditsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosureFourEqn_impl.hsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosureFourEqn_impl.hsrc/pde/IBL/PDEIBLFourEqn3D.h03996c93a0bc06cf932859130f264d1cd7feb3ce1590075359000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edufixed a typo (which fortunately wasn't used yet). added exception throws 2020-05-21 10:35:59 -050003996c93a0bc06cf932859130f264d1cd7feb3cefixed a typo (which fortunately wasn't used yet). added exception throwseditsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosureFourEqn_impl.heditsrc/pde/IBL/PDEIBLFourEqn3D.hsrc/pde/IBL/ClosureRelationsFourEqn3D_CurveFit.h8b85af7bd1d1f654e4886dd664ddd5cff302b9721590075444000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edufixed include filename 2020-05-21 10:37:24 -05008b85af7bd1d1f654e4886dd664ddd5cff302b972fixed include filenameeditsrc/pde/IBL/ClosureRelationsFourEqn3D_CurveFit.hsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosureFourEqn_impl.h1abf1da99c30a18fdd507aab0ca287bf3073ba881590075517000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduremoved redundant exceptions 2020-05-21 10:38:37 -05001abf1da99c30a18fdd507aab0ca287bf3073ba88removed redundant exceptionseditsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosureFourEqn_impl.htest/unit/pde/TCNE/Q1DConservative_btest.cppsrc/pde/TCNE/Q1DTCNEConservative.h5ef91f9716f2a42d3c89d4fd8aeaa6b1aaa2d7291590180366000https://acdl.mit.edu/csi/user/ksaboksaboksabo@mit.eduQ1DConservative for TCNE is functionally completed (only needs aesthetic changes at this point) 2020-05-22 13:46:06 -07005ef91f9716f2a42d3c89d4fd8aeaa6b1aaa2d729Q1DConservative for TCNE is functionally completed (only needs aesthetic changes at this point)edittest/unit/pde/TCNE/Q1DConservative_btest.cppeditsrc/pde/TCNE/Q1DTCNEConservative.hsrc/pde/IBL/ClosureRelationsFourEqn3D_CurveFit.h95cba94c9cbe2f9d8e3e062502472eebb1b3645d1590700188000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edurefactored four-eqn IBL3 curve-fit closure 2020-05-28 16:09:48 -050095cba94c9cbe2f9d8e3e062502472eebb1b3645drefactored four-eqn IBL3 curve-fit closureeditsrc/pde/IBL/ClosureRelationsFourEqn3D_CurveFit.hsrc/pde/IBL/ClosureRelationsFourEqn3D_NeuralNet.hsrc/pde/IBL/ClosureRelations3D_NeuralNet.hd9d3966bef0bc9ecd4303e4f67d1548458d215021590700881000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.educonformed to vera check: should not use "using namespace" in header files 2020-05-28 16:21:21 -0500d9d3966bef0bc9ecd4303e4f67d1548458d21502conformed to vera check: should not use "using namespace" in header fileseditsrc/pde/IBL/ClosureRelations3D_NeuralNet.heditsrc/pde/IBL/ClosureRelationsFourEqn3D_NeuralNet.htest/unit/pde/IBL/SetIBLoutputCellGroup_btest.cpp7af63e1df19632e7baea4f4c142abbb4efb5b1cc1590703152000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edufixed unit tests for after API refactoring 2020-05-28 16:59:12 -05007af63e1df19632e7baea4f4c142abbb4efb5b1ccfixed unit tests for after API refactoringedittest/unit/pde/IBL/SetIBLoutputCellGroup_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block3x3_Auxv_Auxi_IBL_Triangle_btest.cpptest/sandbox/Solve3D_Uncoupled_IBL_FlatPlate_Blasius_toy.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block3x3_Auxv_Auxi_IBL_Quad_btest.cpptest/unit/UnitGrids/XField3D_Sheet_Triangle_X1_btest.cpp1fd6ffaecd0aeea51ba4e77b7abf323b102e90621590704700000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edufixed unit tests for the previous API refactoring 2020-05-28 17:25:00 -05001fd6ffaecd0aeea51ba4e77b7abf323b102e9062fixed unit tests for the previous API refactoringedittest/unit/Discretization/Block/AlgebraicEquationSet_Block3x3_Auxv_Auxi_IBL_Triangle_btest.cppedittest/sandbox/Solve3D_Uncoupled_IBL_FlatPlate_Blasius_toy.cppedittest/unit/UnitGrids/XField3D_Sheet_Triangle_X1_btest.cppedittest/unit/Discretization/Block/AlgebraicEquationSet_Block3x3_Auxv_Auxi_IBL_Quad_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block3x3_Auxv_Auxi_IBL_Triangle_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block3x3_Auxv_Auxi_IBL_Quad_btest.cpp0dbd225b281b0f272c0e0fbed9ef2f2d780fdb701590713348000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edufixed ping tests: finite difference step size 2020-05-28 19:49:08 -05000dbd225b281b0f272c0e0fbed9ef2f2d780fdb70fixed ping tests: finite difference step sizeedittest/unit/Discretization/Block/AlgebraicEquationSet_Block3x3_Auxv_Auxi_IBL_Quad_btest.cppedittest/unit/Discretization/Block/AlgebraicEquationSet_Block3x3_Auxv_Auxi_IBL_Triangle_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block3x3_Auxv_Auxi_IBLFourEqn_Quad_btest.cppsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Real_Instantiate.cppsrc/pde/IBL/PDEIBLFourEqn3D.h25ede71516f63a70a7885e6d8a71fe791b5972601590715050000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadded ping test for four-eqn IBL3 2020-05-28 20:17:30 -050025ede71516f63a70a7885e6d8a71fe791b597260added ping test for four-eqn IBL3addtest/unit/Discretization/Block/AlgebraicEquationSet_Block3x3_Auxv_Auxi_IBLFourEqn_Quad_btest.cppeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Real_Instantiate.cppeditsrc/pde/IBL/PDEIBLFourEqn3D.htest/system/AnalyticSolve/AnalyticSolve3D_IBLFourEqn_StagnationFlow_LamiBL_Triangle_btest.cpptest/system/IO/AnalyticSolve/IBLFourEqn3D_StagnationFlow_LamiBL_Triangle_nelem1d2_p4_Test.txttest/system/IO/AnalyticSolve/IBLFourEqn3D_StagnationFlow_LamiBL_Triangle_nelem1d2_p2_Test.txttest/system/IO/AnalyticSolve/IBLFourEqn3D_StagnationFlow_LamiBL_Triangle_nelem1d1_p1_Test.txttest/system/IO/AnalyticSolve/IBLFourEqn3D_StagnationFlow_LamiBL_Triangle_nelem1d1_p2_Test.txtsrc/pde/IBL/BCIBL3D.cpptest/system/AnalyticSolve/AnalyticSolve_IBL3D_StagnationFlow_LamiBL_Triangle_btest.cpptest/system/IO/AnalyticSolve/IBLFourEqn3D_StagnationFlow_LamiBL_Triangle_nelem1d2_p1_Test.txttest/system/IO/AnalyticSolve/IBLFourEqn3D_StagnationFlow_LamiBL_Triangle_nelem1d1_p3_Test.txttest/system/IO/AnalyticSolve/IBLFourEqn3D_StagnationFlow_LamiBL_Triangle_nelem1d1_p0_Test.txttest/system/IO/AnalyticSolve/IBLFourEqn3D_StagnationFlow_LamiBL_Triangle_nelem1d2_p0_Test.txttest/sandbox/AnalyticSolve3D_DGAdvective_IBL_StagnationFlow_Quasi2D_toy.cpptest/system/IO/AnalyticSolve/IBLFourEqn3D_StagnationFlow_LamiBL_Triangle_nelem1d1_p4_Test.txttest/system/IO/AnalyticSolve/IBLFourEqn3D_StagnationFlow_LamiBL_Triangle_nelem1d2_p3_Test.txte5d61072a1a168711066996ee07bcd82b64443641590719013000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadded Blasius flow test case for four-eqn IBL3D. some cleanup 2020-05-28 21:23:33 -0500e5d61072a1a168711066996ee07bcd82b6444364added Blasius flow test case for four-eqn IBL3D. some cleanupeditsrc/pde/IBL/BCIBL3D.cppaddtest/system/AnalyticSolve/AnalyticSolve3D_IBLFourEqn_StagnationFlow_LamiBL_Triangle_btest.cppaddtest/system/IO/AnalyticSolve/IBLFourEqn3D_StagnationFlow_LamiBL_Triangle_nelem1d1_p1_Test.txtaddtest/system/IO/AnalyticSolve/IBLFourEqn3D_StagnationFlow_LamiBL_Triangle_nelem1d1_p2_Test.txtaddtest/system/IO/AnalyticSolve/IBLFourEqn3D_StagnationFlow_LamiBL_Triangle_nelem1d2_p0_Test.txtaddtest/system/IO/AnalyticSolve/IBLFourEqn3D_StagnationFlow_LamiBL_Triangle_nelem1d2_p1_Test.txtedittest/system/AnalyticSolve/AnalyticSolve_IBL3D_StagnationFlow_LamiBL_Triangle_btest.cppaddtest/system/IO/AnalyticSolve/IBLFourEqn3D_StagnationFlow_LamiBL_Triangle_nelem1d1_p3_Test.txtaddtest/system/IO/AnalyticSolve/IBLFourEqn3D_StagnationFlow_LamiBL_Triangle_nelem1d1_p0_Test.txtaddtest/system/IO/AnalyticSolve/IBLFourEqn3D_StagnationFlow_LamiBL_Triangle_nelem1d2_p2_Test.txtdeletetest/sandbox/AnalyticSolve3D_DGAdvective_IBL_StagnationFlow_Quasi2D_toy.cppaddtest/system/IO/AnalyticSolve/IBLFourEqn3D_StagnationFlow_LamiBL_Triangle_nelem1d2_p3_Test.txtaddtest/system/IO/AnalyticSolve/IBLFourEqn3D_StagnationFlow_LamiBL_Triangle_nelem1d1_p4_Test.txtaddtest/system/IO/AnalyticSolve/IBLFourEqn3D_StagnationFlow_LamiBL_Triangle_nelem1d2_p4_Test.txtsrc/pde/IBL/QauxvInterpret3D.hd1c3518e3723ca3a2ef7de2a636dea6a9ed27ac71590719947000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadded include 2020-05-28 21:39:07 -0500d1c3518e3723ca3a2ef7de2a636dea6a9ed27ac7added includeeditsrc/pde/IBL/QauxvInterpret3D.hsrc/pde/IBL/ClosureRelationsFourEqn3D_NeuralNet.hsrc/pde/IBL/ClosureRelations3D_NeuralNet.ha10098d8a36b4fcee00ec4f5b2551aa14de0eaa81590721762000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadded includes 2020-05-28 22:09:22 -0500a10098d8a36b4fcee00ec4f5b2551aa14de0eaa8added includeseditsrc/pde/IBL/ClosureRelationsFourEqn3D_NeuralNet.heditsrc/pde/IBL/ClosureRelations3D_NeuralNet.htest/sandbox/Solve3D_Uncoupled_IBLFourEqn_FlatPlate_Blasius_toy.cpp737467d0e1b6c73b0e2454ad6ca07bb47fc395b61590723096000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.educhecked four-eqn IBL3D on Blasius case and stagnation radial flow 2020-05-28 22:31:36 -0500737467d0e1b6c73b0e2454ad6ca07bb47fc395b6checked four-eqn IBL3D on Blasius case and stagnation radial flowedittest/sandbox/Solve3D_Uncoupled_IBLFourEqn_FlatPlate_Blasius_toy.cpptest/sandbox/Solve3D_Uncoupled_IBLFourEqn_FlatPlate_StagnationRadial_toy.cpptest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cpptest/sandbox/Solve3D_Coupled3x3_IBLFourEqn_FlatPlate_torpedo_agrid45_toy.cppb23c56a4ba0538332767830f8b905881b0fc49241590723792000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadded a stagnation flow toy case. mucked with IBL3 for torpedo case 2020-05-28 22:43:12 -0500b23c56a4ba0538332767830f8b905881b0fc4924added a stagnation flow toy case. mucked with IBL3 for torpedo caseedittest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cppaddtest/sandbox/Solve3D_Uncoupled_IBLFourEqn_FlatPlate_StagnationRadial_toy.cppedittest/sandbox/Solve3D_Coupled3x3_IBLFourEqn_FlatPlate_torpedo_agrid45_toy.cpptest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid0_toy.cppe0feb7f1ae6236cc66cc14a6ae2e938a173c18f51590756227000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edufixed toy case to keep up with API refactoring 2020-05-29 07:43:47 -0500e0feb7f1ae6236cc66cc14a6ae2e938a173c18f5fixed toy case to keep up with API refactoringedittest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid0_toy.cppsrc/Field/FieldArea_Instantiate_3D.cpp1442d45087688aae89bb195e7561b039cd7214441590756434000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadded missing include related to MPI 2020-05-29 07:47:14 -05001442d45087688aae89bb195e7561b039cd721444added missing include related to MPIeditsrc/Field/FieldArea_Instantiate_3D.cpptest/system/AnalyticSolve/AnalyticSolve3D_IBLFourEqn_StagnationFlow_LamiBL_Triangle_btest.cpped7fdd94ac0b0ff147dc8bb5378da6396630f90e1590790569000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edusuppresed file dump in system test 2020-05-29 17:16:09 -0500ed7fdd94ac0b0ff147dc8bb5378da6396630f90esuppresed file dump in system testedittest/system/AnalyticSolve/AnalyticSolve3D_IBLFourEqn_StagnationFlow_LamiBL_Triangle_btest.cppsrc/pde/IBL/ElementProjectionOutputIBL3D.hd38321301d905f77ef5d608493674f886a51e3c91590870721000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadded assertions 2020-05-30 15:32:01 -0500d38321301d905f77ef5d608493674f886a51e3c9added assertionseditsrc/pde/IBL/ElementProjectionOutputIBL3D.hsrc/pde/IBL/ElementProjectionOutputIBL3D.hsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatrixD_InverseLU_Real_Instantiate.cppsrc/Field/FieldArea_DG_Cell_Instantiate_3D.cppsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatMul/MatMul_Native_Real.cppsrc/Field/FieldArea_Instantiate_3D.cppsrc/Field/output_Tecplot/output_Tecplot_FieldArea.cppb3f50c32bbf7c4026952d12d8bf8c2abe4b826df1590877598000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadd some derivates to the IBL3 output 2020-05-30 17:26:38 -0500b3f50c32bbf7c4026952d12d8bf8c2abe4b826dfadd some derivates to the IBL3 outputeditsrc/Field/FieldArea_DG_Cell_Instantiate_3D.cppeditsrc/Field/output_Tecplot/output_Tecplot_FieldArea.cppeditsrc/pde/IBL/ElementProjectionOutputIBL3D.heditsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatMul/MatMul_Native_Real.cppeditsrc/Field/FieldArea_Instantiate_3D.cppeditsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatrixD_InverseLU_Real_Instantiate.cpptest/system/AnalyticSolve/AnalyticSolve3D_IBLFourEqn_StagnationFlow_LamiBL_Triangle_btest.cppddbf2beaba894ce3c3f3a2c5161ebbb20cd413711590877922000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edurelaxed pyrite tolerance 2020-05-30 17:32:02 -0500ddbf2beaba894ce3c3f3a2c5161ebbb20cd41371relaxed pyrite toleranceedittest/system/AnalyticSolve/AnalyticSolve3D_IBLFourEqn_StagnationFlow_LamiBL_Triangle_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block3x3_Auxv_Auxi_IBL_Triangle_btest.cpptest/system/AnalyticSolve/AnalyticSolve3D_IBLFourEqn_StagnationFlow_LamiBL_Triangle_btest.cpp460a6c7bc652f4aa80f6c299c5462e5165630ae01590895667000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edurelaxed pyrite tolerance for intel compiler. speed up ping test to avoid time-out 2020-05-30 22:27:47 -0500460a6c7bc652f4aa80f6c299c5462e5165630ae0relaxed pyrite tolerance for intel compiler. speed up ping test to avoid time-outedittest/unit/Discretization/Block/AlgebraicEquationSet_Block3x3_Auxv_Auxi_IBL_Triangle_btest.cppedittest/system/AnalyticSolve/AnalyticSolve3D_IBLFourEqn_StagnationFlow_LamiBL_Triangle_btest.cppsrc/pde/IBL/ElementProjectionOutputIBL3D.hff27e621f1738850a69eeeba1e2c5ef6c1307a121590968426000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edurenamed output 2020-05-31 18:40:26 -0500ff27e621f1738850a69eeeba1e2c5ef6c1307a12renamed outputeditsrc/pde/IBL/ElementProjectionOutputIBL3D.hsrc/pde/IBL/ElementProjectionOutputIBL3D.hsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatrixD_InverseLU_Real_Instantiate.cppsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatMul/MatMul_Native_Real.cppsrc/Field/FieldArea_DG_Cell_Instantiate_3D.cppsrc/Field/FieldArea_Instantiate_3D.cppsrc/Field/output_Tecplot/output_Tecplot_FieldArea.cppf7fc332fe8b0fb82edf38240798cb8a877c42cd71590976735000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadded and refactored IBL3 output 2020-05-31 20:58:55 -0500f7fc332fe8b0fb82edf38240798cb8a877c42cd7added and refactored IBL3 outputeditsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatMul/MatMul_Native_Real.cppeditsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatrixD_InverseLU_Real_Instantiate.cppeditsrc/Field/FieldArea_DG_Cell_Instantiate_3D.cppeditsrc/pde/IBL/ElementProjectionOutputIBL3D.heditsrc/Field/output_Tecplot/output_Tecplot_FieldArea.cppeditsrc/Field/FieldArea_Instantiate_3D.cppsrc/NonLinearSolver/LineUpdate/HalvingSearchLineUpdate_impl.h4afb4c86a9883cd23996e11d2955fe8f5f68b8591591068112000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.edumake verbose_ if-tests consistent throughout 2020-06-01 20:21:52 -07004afb4c86a9883cd23996e11d2955fe8f5f68b859make verbose_ if-tests consistent throughouteditsrc/NonLinearSolver/LineUpdate/HalvingSearchLineUpdate_impl.hsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_backsolve.he8fec810117dcebf3b1d548744728865295856201591068173000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.edufixed screen dump for checkSolve_ when residuals above tolerance 2020-06-01 20:22:53 -0700e8fec810117dcebf3b1d54874472886529585620fixed screen dump for checkSolve_ when residuals above toleranceeditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_backsolve.hsrc/NonLinearSolver/NewtonSolver_impl.hsrc/NonLinearSolver/NewtonSolverParams.cppsrc/NonLinearSolver/NewtonSolver.h4b2f1682bf9996605b680be5a6b8db76576923431591068288000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduadded option to dump solution at each Newton iteration 2020-06-01 20:24:48 -07004b2f1682bf9996605b680be5a6b8db7657692343added option to dump solution at each Newton iterationeditsrc/NonLinearSolver/NewtonSolverParams.cppeditsrc/NonLinearSolver/NewtonSolver.heditsrc/NonLinearSolver/NewtonSolver_impl.hsrc/pde/PorousMedia/Q2DPrimitive_LogpnSw.htest/unit/pde/PorousMedia/Q2DPrimitive_LogpnSw_btest.cpptest/unit/pde/PorousMedia/Q2DPrimitive_pnSw_btest.cppsrc/pde/PorousMedia/Q2DPrimitive_pnSw.h66e8ad1c823fc4755e228c6f407fbac5709b2cc31591068438000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduadded pressure gradient for space-time 2020-06-01 20:27:18 -070066e8ad1c823fc4755e228c6f407fbac5709b2cc3added pressure gradient for space-timeedittest/unit/pde/PorousMedia/Q2DPrimitive_pnSw_btest.cppeditsrc/pde/PorousMedia/Q2DPrimitive_LogpnSw.hedittest/unit/pde/PorousMedia/Q2DPrimitive_LogpnSw_btest.cppeditsrc/pde/PorousMedia/Q2DPrimitive_pnSw.hsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_ArtificialViscosity_TwoPhase2D_LogpnSw.cppsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_ArtificialViscosity_TwoPhase2D_LogpnSw.cppsrc/pde/PorousMedia/BCTwoPhaseArtificialViscosity2D.cppsrc/ErrorEstimate/CMakeLists.txtsrc/pde/PorousMedia/BCTwoPhase2D.cppsrc/Discretization/CMakeLists.txt0b5a10fc96e4ab5308c29c99daabb26759b39c8a1591069049000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduadded instantiations, etc, needed for log(p) variables with look-up porosity/permeability tables 2020-06-01 20:37:29 -07000b5a10fc96e4ab5308c29c99daabb26759b39c8aadded instantiations, etc, needed for log(p) variables with look-up porosity/permeability tableseditsrc/ErrorEstimate/CMakeLists.txteditsrc/pde/PorousMedia/BCTwoPhaseArtificialViscosity2D.cppaddsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_ArtificialViscosity_TwoPhase2D_LogpnSw.cppeditsrc/pde/PorousMedia/BCTwoPhase2D.cppeditsrc/Discretization/CMakeLists.txtaddsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_ArtificialViscosity_TwoPhase2D_LogpnSw.cppsrc/pde/PorousMedia/PDETwoPhase_ArtificialViscosity2D.h39e007bba1825c4c3d67662156ee41e0c4d97a4e1591069374000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduadded grid-Laplacian artificial viscosity for pressure; currently hard-coded diffusion coefficient 2020-06-01 20:42:54 -070039e007bba1825c4c3d67662156ee41e0c4d97a4eadded grid-Laplacian artificial viscosity for pressure; currently hard-coded diffusion coefficienteditsrc/pde/PorousMedia/PDETwoPhase_ArtificialViscosity2D.hsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_3x3.hsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_4x4.h85d6e69797a7241da76a9e40a1820aae6cdb91661591150274000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edutrying to fix gnu9 compiler warning 2020-06-02 21:11:14 -050085d6e69797a7241da76a9e40a1820aae6cdb9166trying to fix gnu9 compiler warningeditsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_3x3.heditsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_4x4.hsrc/LinearAlgebra/BlockLinAlg/VectorBlock_4.hsrc/LinearAlgebra/BlockLinAlg/VectorBlock_3.htest/unit/LinearAlgebra/BlockLinAlg/VectorBlock_3_DenseVector_btest.cppsrc/LinearAlgebra/BlockLinAlg/VectorBlock_2.h17cb3f428f7adc3a21445327ffcd75f58b11312d1591168345000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduadded "#include <utilities>" for std::move; added unit test for VectorBlock_3 2020-06-03 00:12:25 -070017cb3f428f7adc3a21445327ffcd75f58b11312dadded "#include <utilities>" for std::move; added unit test for VectorBlock_3editsrc/LinearAlgebra/BlockLinAlg/VectorBlock_3.haddtest/unit/LinearAlgebra/BlockLinAlg/VectorBlock_3_DenseVector_btest.cppeditsrc/LinearAlgebra/BlockLinAlg/VectorBlock_2.heditsrc/LinearAlgebra/BlockLinAlg/VectorBlock_4.hsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_ArtificialViscosity_TwoPhase2D_LogpnSw.cpp3a43b39f612558d55cecbf5881c1eb7b8f2535721591168448000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.edufixed vera line-length squawk 2020-06-03 00:14:08 -07003a43b39f612558d55cecbf5881c1eb7b8f253572fixed vera line-length squawkeditsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_ArtificialViscosity_TwoPhase2D_LogpnSw.cppsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_ArtificialViscosity_TwoPhase2D_LogpnSw.cpp87eb72e21ad611238f1ee5afe0b5d8742615d99e1591196005000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.edufixed vera line-length squawk 2020-06-03 07:53:25 -070087eb72e21ad611238f1ee5afe0b5d8742615d99efixed vera line-length squawkeditsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_ArtificialViscosity_TwoPhase2D_LogpnSw.cppsrc/pde/PorousMedia/BCTwoPhaseArtificialViscosity2D.cpp42cf663eb98d93028ca84d22ca9110989ac280471591249401000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.edufixed vera line-length squawk 2020-06-03 22:43:21 -070042cf663eb98d93028ca84d22ca9110989ac28047fixed vera line-length squawkeditsrc/pde/PorousMedia/BCTwoPhaseArtificialViscosity2D.cppsrc/pde/IBL/PDEIBLFourEqn3D.hsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosureFourEqn_impl.hsrc/pde/IBL/ClosureRelationsFourEqn3D_CurveFit.hsrc/pde/IBL/ClosureRelationsFourEqn3D_CurveFit_hack.h5e843179d377568d19a950dd42fbc9cc53a5cc781591390224000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadd a new curve fit model based on low-dissipative DBL3 data 2020-06-05 15:50:24 -05005e843179d377568d19a950dd42fbc9cc53a5cc78add a new curve fit model based on low-dissipative DBL3 dataeditsrc/pde/IBL/PDEIBLFourEqn3D.heditsrc/pde/IBL/ClosureRelationsFourEqn3D_CurveFit.haddsrc/pde/IBL/ClosureRelationsFourEqn3D_CurveFit_hack.heditsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosureFourEqn_impl.hsrc/PanelMethod/PiecewiseConstSourcePanel_FlatPlate3D.h7bd1ca4bd5c452a7f022810a94a8cbe9a87e5b901591390284000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduallow for uncoupled/viscou-only IBL3 solution by tweaking the panel method 2020-06-05 15:51:24 -05007bd1ca4bd5c452a7f022810a94a8cbe9a87e5b90allow for uncoupled/viscou-only IBL3 solution by tweaking the panel methodeditsrc/PanelMethod/PiecewiseConstSourcePanel_FlatPlate3D.htest/unit/LinearAlgebra/BlockLinAlg/VectorBlock_3_DenseVector_btest.cppsrc/LinearAlgebra/BlockLinAlg/VectorBlock_3.hsrc/LinearAlgebra/BlockLinAlg/VectorBlock_2.h772eab8a9a55750da7211d2597c5470c15866b8d1591396336000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.edufixed VectorBlock_3 unit test; made ::m() and ::n() static, so 2, 3, and 4 are all consistent 2020-06-05 15:32:16 -0700772eab8a9a55750da7211d2597c5470c15866b8dfixed VectorBlock_3 unit test; made ::m() and ::n() static, so 2, 3, and 4 are all consistenteditsrc/LinearAlgebra/BlockLinAlg/VectorBlock_2.hedittest/unit/LinearAlgebra/BlockLinAlg/VectorBlock_3_DenseVector_btest.cppeditsrc/LinearAlgebra/BlockLinAlg/VectorBlock_3.hsrc/PanelMethod/PiecewiseConstSourcePanel_FlatPlate3D.h83f36751186372ef15e9e3d3baa2df84b0a1c2091591408113000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduforgot to save changes in the last commit... 2020-06-05 20:48:33 -050083f36751186372ef15e9e3d3baa2df84b0a1c209forgot to save changes in the last commit...editsrc/PanelMethod/PiecewiseConstSourcePanel_FlatPlate3D.htest/unit/Discretization/Block/CMakeLists.txttest/unit/UnitGrids/XField3D_Sheet_Quad_X1.h69f0d48b50e775f0b70fe57d50743813f1ad4af41591491327000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edurelaxed Jenkins timeout threshold for some large ping tests 2020-06-06 19:55:27 -050069f0d48b50e775f0b70fe57d50743813f1ad4af4relaxed Jenkins timeout threshold for some large ping testsedittest/unit/Discretization/Block/CMakeLists.txtedittest/unit/UnitGrids/XField3D_Sheet_Quad_X1.hsrc/pde/IBL/PDEIBL3D.h5afa127220bca9a221bedc1cfb873479b2c171411591536722000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduminor tweak 2020-06-07 08:32:02 -05005afa127220bca9a221bedc1cfb873479b2c17141minor tweakeditsrc/pde/IBL/PDEIBL3D.htest/unit/Discretization/Block/AlgebraicEquationSet_Block3x3_Auxv_Auxi_IBL_Quad_btest.cppc40aa914597616e4ce87cb2f41585e173a59a5611591537603000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduspeed up ping test by turning off some redundant sub-block checks 2020-06-07 08:46:43 -0500c40aa914597616e4ce87cb2f41585e173a59a561speed up ping test by turning off some redundant sub-block checksedittest/unit/Discretization/Block/AlgebraicEquationSet_Block3x3_Auxv_Auxi_IBL_Quad_btest.cppsrc/LinearAlgebra/SparseLinAlg/Preconditioners/LU_SGS.h28b2d797ab6f6153f22ef1a46ec4960e8d0065df1591587522000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edufix cppcheck error 2020-06-07 22:38:42 -050028b2d797ab6f6153f22ef1a46ec4960e8d0065dffix cppcheck erroreditsrc/LinearAlgebra/SparseLinAlg/Preconditioners/LU_SGS.htest/unit/Discretization/Block/AlgebraicEquationSet_Block3x3_Auxv_Auxi_IBLFourEqn_Quad_btest.cpp2edf6e1dd6b5817eeddc5f22827e76c294ff6c181591626085000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduspeed up ping test by turning off tests on some sub-blocks of the jacobian 2020-06-08 09:21:25 -05002edf6e1dd6b5817eeddc5f22827e76c294ff6c18speed up ping test by turning off tests on some sub-blocks of the jacobianedittest/unit/Discretization/Block/AlgebraicEquationSet_Block3x3_Auxv_Auxi_IBLFourEqn_Quad_btest.cpptest/sandbox/Solve3D_Potential_Adjoint_toy.cpp4110545d2312073a37861fb34bcbe93e282f9cc71591672921000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduadded directory creation for output files 2020-06-08 20:22:01 -07004110545d2312073a37861fb34bcbe93e282f9cc7added directory creation for output filesedittest/sandbox/Solve3D_Potential_Adjoint_toy.cppscripts/jenkins/cmake_jenkins.shscripts/jenkins/SANS_Depend.sh327636cb07dd1d883d865e0f01376dc84479dde91591673413000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduDon't use python2 with jenkins 2020-06-08 23:30:13 -0400327636cb07dd1d883d865e0f01376dc84479dde9Don't use python2 with jenkinseditscripts/jenkins/cmake_jenkins.sheditscripts/jenkins/SANS_Depend.shtest/sandbox/Solve3D_Potential_Adjoint_toy.cpp748addcba6c693a40ab88587314312f9f106ccdd1591675683000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduremoved old version of adjoint-compatible potential solver for Hershey wing 2020-06-08 21:08:03 -0700748addcba6c693a40ab88587314312f9f106ccddremoved old version of adjoint-compatible potential solver for Hershey wingdeletetest/sandbox/Solve3D_Potential_Adjoint_toy.cpptest/unit/pde/PorousMedia/PDETwoPhase_ArtificialViscosity2D_btest.cpp293b0906370c77f238bfeb47cecb9cee1c1275081591725249000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.edutemporarily disabled tests involving artificial viscosity fluxes if USE_PRESSURE_AV defined 2020-06-09 10:54:09 -0700293b0906370c77f238bfeb47cecb9cee1c127508temporarily disabled tests involving artificial viscosity fluxes if USE_PRESSURE_AV definededittest/unit/pde/PorousMedia/PDETwoPhase_ArtificialViscosity2D_btest.cpptest/unit/LinearAlgebra/BlockLinAlg/VectorBlock_2_DenseVector_btest.cpptest/unit/LinearAlgebra/BlockLinAlg/VectorBlock_4_btest.cpptest/unit/LinearAlgebra/BlockLinAlg/VectorBlock_3_DenseVector_btest.cpp891b7a3fc29b3feebea58203ad2c9512e3ee54391591737810000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.edumake VectorBlock test-suite names unique (so make unit_build works) 2020-06-09 14:23:30 -0700891b7a3fc29b3feebea58203ad2c9512e3ee5439make VectorBlock test-suite names unique (so make unit_build works)edittest/unit/LinearAlgebra/BlockLinAlg/VectorBlock_4_btest.cppedittest/unit/LinearAlgebra/BlockLinAlg/VectorBlock_2_DenseVector_btest.cppedittest/unit/LinearAlgebra/BlockLinAlg/VectorBlock_3_DenseVector_btest.cpptest/unit/pde/FullPotential/LinearizedIncompressiblePotential3D_Circulation_btest.cpp43a40ba6291bfaaa0be74c8e382311f40fcf8bef1591737938000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduadded unit tests for circulation integrations 2020-06-09 14:25:38 -070043a40ba6291bfaaa0be74c8e382311f40fcf8befadded unit tests for circulation integrationsaddtest/unit/pde/FullPotential/LinearizedIncompressiblePotential3D_Circulation_btest.cppsrc/pde/FullPotential/LinearizedIncompressiblePotential3D_Circulation.h790ec96eab331e7918a5b7f40f094ed1ffc26afe1591738043000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduadded circulation integrations for lift & roll as functional outputs 2020-06-09 14:27:23 -0700790ec96eab331e7918a5b7f40f094ed1ffc26afeadded circulation integrations for lift & roll as functional outputsaddsrc/pde/FullPotential/LinearizedIncompressiblePotential3D_Circulation.htest/unit/IO/Meshes/Tri_Q4_2Elem.mshsrc/Meshing/refine/XField_refine.cpptest/unit/Meshing/gmsh/XField_gmsh_btest.cppsrc/Meshing/gmsh/GMSHtoSANS.cppCMakeInclude/Dependencies.cmaketest/unit/IO/Meshes/Tri_Q3_2Elem.msh8375944404c98e584bd44dbd6df0170a5ae9644f1591896243000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdd Q3 and Q4 elements to Gmsh IO 2020-06-11 13:24:03 -04008375944404c98e584bd44dbd6df0170a5ae9644fAdd Q3 and Q4 elements to Gmsh IOeditCMakeInclude/Dependencies.cmakeedittest/unit/Meshing/gmsh/XField_gmsh_btest.cppeditsrc/Meshing/gmsh/GMSHtoSANS.cppeditsrc/Meshing/refine/XField_refine.cppaddtest/unit/IO/Meshes/Tri_Q4_2Elem.mshaddtest/unit/IO/Meshes/Tri_Q3_2Elem.mshtest/unit/pde/FullPotential/LinearizedIncompressiblePotential3D_Circulation_btest.cppsrc/pde/FullPotential/LinearizedIncompressiblePotential3D_Circulation.htest/unit/pde/FullPotential/LinearizedIncompressiblePotential3D_Trefftz_btest.cppebd0590b077428bb7127f105d83fa357b8ef48751591910643000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.educlean-up of circulation-base functional code/test; added drag but #ifdef'ed out, as it's not complete 2020-06-11 14:24:03 -0700ebd0590b077428bb7127f105d83fa357b8ef4875clean-up of circulation-base functional code/test; added drag but #ifdef'ed out, as it's not completeeditsrc/pde/FullPotential/LinearizedIncompressiblePotential3D_Circulation.hedittest/unit/pde/FullPotential/LinearizedIncompressiblePotential3D_Trefftz_btest.cppedittest/unit/pde/FullPotential/LinearizedIncompressiblePotential3D_Circulation_btest.cppsrc/Discretization/Block/AlgebraicEquationSet_Block3x3.htest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cppsrc/Discretization/Block/AlgebraicEquationSet_Block3x3_impl.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_3x3_Instantiate.cpp912268ac47aebd93fa73827632f99650712760db1591920085000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduintermediate commit: working on hooking up PETSc for block algebraic equation system 2020-06-11 19:01:25 -0500912268ac47aebd93fa73827632f99650712760dbintermediate commit: working on hooking up PETSc for block algebraic equation systemeditsrc/Discretization/Block/AlgebraicEquationSet_Block3x3.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_3x3_Instantiate.cppedittest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cppeditsrc/Discretization/Block/AlgebraicEquationSet_Block3x3_impl.hCMakeInclude/Dependencies.cmake4b80892e0d361deb3d3e4e75630bfbdac7ccd6f81591968493000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix finding macOS Accelerate BLAS 2020-06-12 09:28:13 -04004b80892e0d361deb3d3e4e75630bfbdac7ccd6f8Fix finding macOS Accelerate BLASeditCMakeInclude/Dependencies.cmakesrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver.hsrc/Discretization/Potential_Adjoint/StabilizationNitsche_Potential_Adjoint.h8a24b1bf69ced9b55fae8b2bb2d4e28a3c24b3921591976412000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.educppcheck fixes for nightly 2020-06-12 08:40:12 -07008a24b1bf69ced9b55fae8b2bb2d4e28a3c24b392cppcheck fixes for nightlyeditsrc/Discretization/Potential_Adjoint/StabilizationNitsche_Potential_Adjoint.heditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver.htest/sandbox/Adapt3D_VMSDBR2_NavierStokes_DeltaWing_Chain_toy.cpptest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cpptest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_Chain_toy.cpp592fd0636a8205a5c384c5b9b926ccd96eb9bbb91591994997000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumoving back to develop 2020-06-12 16:49:57 -0400592fd0636a8205a5c384c5b9b926ccd96eb9bbb9moving back to developedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_Chain_toy.cppedittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppedittest/sandbox/Adapt3D_VMSDBR2_NavierStokes_DeltaWing_Chain_toy.cppedittest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppsrc/pde/IBL/PDEIBLFourEqn3D.hsrc/pde/IBL/PDEIBL3D.ha516b2785b93949607c59a426163c509eebf53ff1592086032000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadd empty definition to fix undefined reference in weekly test 2020-06-13 17:07:12 -0500a516b2785b93949607c59a426163c509eebf53ffadd empty definition to fix undefined reference in weekly testeditsrc/pde/IBL/PDEIBLFourEqn3D.heditsrc/pde/IBL/PDEIBL3D.hsrc/pde/IBL/PDEIBLFourEqn3D.hsrc/pde/IBL/PDEIBL3D.hd844fd79a60b9fe08c412da881a142a95535acb21592086132000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadd empty definition to fix undefined reference in weekly test 2020-06-13 17:08:52 -0500d844fd79a60b9fe08c412da881a142a95535acb2add empty definition to fix undefined reference in weekly testeditsrc/pde/IBL/PDEIBLFourEqn3D.heditsrc/pde/IBL/PDEIBL3D.hsrc/pde/IBL/PDEIBL3D.hsrc/pde/IBL/PDEIBLFourEqn3D.h35608aa77cb449590226bb85761eb11ff97d3f281592096459000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadd empty definition to fix undefined reference in weekly test 2020-06-13 20:00:59 -050035608aa77cb449590226bb85761eb11ff97d3f28add empty definition to fix undefined reference in weekly testeditsrc/pde/IBL/PDEIBL3D.heditsrc/pde/IBL/PDEIBLFourEqn3D.hsrc/Adaptation/MOESS/SolverInterface_VMSD_BR2.h0fd51cd008027ab322827ed2fa9e45b6f1c4de361592157568000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduvera fix 2020-06-14 13:59:28 -04000fd51cd008027ab322827ed2fa9e45b6f1c4de36vera fixeditsrc/Adaptation/MOESS/SolverInterface_VMSD_BR2.hsrc/pde/IBL/ClosureRelationsFourEqn3D_CurveFit_lowDissipation.hb40c9005e31ce3fdb5c9dfad37ca463c08f336ef1592184920000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadded a new set of closure relations based on low-dissipation DBL3 data 2020-06-14 20:35:20 -0500b40c9005e31ce3fdb5c9dfad37ca463c08f336efadded a new set of closure relations based on low-dissipation DBL3 dataaddsrc/pde/IBL/ClosureRelationsFourEqn3D_CurveFit_lowDissipation.hsrc/pde/IBL/ClosureRelationsFourEqn3D_CurveFit_lowDissipation.h6f73da006e84acdd8b54bf4820b3d5ef1adf61371592185612000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduupdated RthCf1 correlation coefficient 2020-06-14 20:46:52 -05006f73da006e84acdd8b54bf4820b3d5ef1adf6137updated RthCf1 correlation coefficienteditsrc/pde/IBL/ClosureRelationsFourEqn3D_CurveFit_lowDissipation.hsrc/pde/IBL/ClosureRelationsFourEqn3D_CurveFit_lowDissipation.ha0d8fee5c8c4d281b6e28ef9de4473f0e756756e1592188466000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edufixed call to undefined function 2020-06-14 21:34:26 -0500a0d8fee5c8c4d281b6e28ef9de4473f0e756756efixed call to undefined functioneditsrc/pde/IBL/ClosureRelationsFourEqn3D_CurveFit_lowDissipation.htest/sandbox/Solve3D_VMSDBR2_NavierStokes_DeltaWing_toy.cppb03b4204fb6d6963e073fed3f2eded2742cebcb41592316370000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduremoving unneeded test 2020-06-16 10:06:10 -0400b03b4204fb6d6963e073fed3f2eded2742cebcb4removing unneeded testdeletetest/sandbox/Solve3D_VMSDBR2_NavierStokes_DeltaWing_toy.cpptest/unit/pde/TCNE/PDETCNEEuler1D_btest.cppsrc/pde/TCNE/TCNEChemistryModels.hsrc/pde/TCNE/TCNEGasModel_StatMech.htest/unit/pde/TCNE/TCNEChemistryModels_btest.cppsrc/pde/TCNE/PDETCNEEuler1D.hf608f734738873910af19e725b07526c9f68e3471592335417000https://acdl.mit.edu/csi/user/ksaboksaboksabo@mit.eduminor updates to TCNE stuff (getting back into it) 2020-06-16 12:23:37 -0700f608f734738873910af19e725b07526c9f68e347minor updates to TCNE stuff (getting back into it)edittest/unit/pde/TCNE/PDETCNEEuler1D_btest.cppeditsrc/pde/TCNE/TCNEGasModel_StatMech.hedittest/unit/pde/TCNE/TCNEChemistryModels_btest.cppeditsrc/pde/TCNE/PDETCNEEuler1D.heditsrc/pde/TCNE/TCNEChemistryModels.htest/sandbox/Solve3D_Coupled3x3_IBLFourEqn_FlatPlate_torpedo_agrid45_toy.cppsrc/pde/IBL/BCIBL3D.hsrc/pde/IBL/BCIBL3D.cppsrc/Discretization/Galerkin/IntegrandBoundaryTrace_mitLG_Galerkin_manifold_IBL3D.h3081a93799930dbb649b4b671ecf48b589889de61592352650000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadded mitLG BC for four equation IBL3D 2020-06-16 19:10:50 -05003081a93799930dbb649b4b671ecf48b589889de6added mitLG BC for four equation IBL3Deditsrc/pde/IBL/BCIBL3D.heditsrc/Discretization/Galerkin/IntegrandBoundaryTrace_mitLG_Galerkin_manifold_IBL3D.hedittest/sandbox/Solve3D_Coupled3x3_IBLFourEqn_FlatPlate_torpedo_agrid45_toy.cppeditsrc/pde/IBL/BCIBL3D.cpptest/sandbox/Adapt3D_VMSDBR2_NavierStokes_DeltaWing_Chain_toy.cpp4e5a6b13370cbff9a09731ee69a2a1d09eabad6d1592398212000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edufixing unused var 2020-06-17 08:50:12 -04004e5a6b13370cbff9a09731ee69a2a1d09eabad6dfixing unused varedittest/sandbox/Adapt3D_VMSDBR2_NavierStokes_DeltaWing_Chain_toy.cppsrc/Meshing/refine/MesherInterface_refine.cppsrc/Meshing/refine/XField_refine.cpp7dd7a12da2e91d2d107e89ddde7a7e15af2c90781592398765000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdate for latest version of refine 2020-06-17 08:59:25 -04007dd7a12da2e91d2d107e89ddde7a7e15af2c9078Update for latest version of refineeditsrc/Meshing/refine/XField_refine.cppeditsrc/Meshing/refine/MesherInterface_refine.cpptest/sandbox/Adapt3D_VMSDBR2_NavierStokes_DeltaWing_Chain_toy.cpp59f986a830f3db5a572b807b8c811332f98087b51592434929000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumissing space 2020-06-17 19:02:09 -040059f986a830f3db5a572b807b8c811332f98087b5missing spaceedittest/sandbox/Adapt3D_VMSDBR2_NavierStokes_DeltaWing_Chain_toy.cppDeveloperEmailAddressesb2cd3e9e859275198509a72cfb5f8dd6a6b823af1592506110000https://acdl.mit.edu/csi/user/vpr11vpr11vpr11@mit.eduAdded vpr11@mit.edu to DeveloperEmailAddresses 2020-06-18 14:48:30 -0400b2cd3e9e859275198509a72cfb5f8dd6a6b823afAdded vpr11@mit.edu to DeveloperEmailAddresseseditDeveloperEmailAddressestest/unit/pde/TCNE/PDETCNEEuler1D_btest.cppsrc/pde/TCNE/TCNEChemistryModels.htest/unit/pde/TCNE/TCNEChemistryModels_btest.cppsrc/pde/TCNE/PDETCNEEuler1D.h9bd5339c5bf0dacea3f75340df97682828ebfb3f1592610330000https://acdl.mit.edu/csi/user/ksaboksaboksabo@mit.eduEnd of week dump. 2020-06-19 16:45:30 -07009bd5339c5bf0dacea3f75340df97682828ebfb3fEnd of week dump.edittest/unit/pde/TCNE/TCNEChemistryModels_btest.cppedittest/unit/pde/TCNE/PDETCNEEuler1D_btest.cppeditsrc/pde/TCNE/TCNEChemistryModels.heditsrc/pde/TCNE/PDETCNEEuler1D.hsrc/pde/PorousMedia/PDETwoPhase_ArtificialViscosity2D.hsrc/pde/ArtificialViscosity/AVSensor_Source2D.he23d0b44043a7a0b458ce43caf8f46895d85149c1592836644000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduadded pressure jump into source for AV sensor in two-phase porous media 2020-06-22 07:37:24 -0700e23d0b44043a7a0b458ce43caf8f46895d85149cadded pressure jump into source for AV sensor in two-phase porous mediaeditsrc/pde/PorousMedia/PDETwoPhase_ArtificialViscosity2D.heditsrc/pde/ArtificialViscosity/AVSensor_Source2D.htest/sandbox/Adapt3D_DGBR2_TwoPhase_ArtificialViscosity_ST_SPE10_toy.cppc15a019ca219a467f874009f4fc4cf3ae74691d71592837220000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduminor changes to SPE10 test case: added #ifdef's for log(pn), table lookup; changed output directory; changed initial grid to 4x4x4 (was 10x10x10); changed pressure BCs to pnIn=7000, pnOut=5000 2020-06-22 07:47:00 -0700c15a019ca219a467f874009f4fc4cf3ae74691d7minor changes to SPE10 test case: added #ifdef's for log(pn), table lookup; changededittest/sandbox/Adapt3D_DGBR2_TwoPhase_ArtificialViscosity_ST_SPE10_toy.cppsrc/pde/ArtificialViscosity/AVSensor_Source2D.htest/unit/pde/ArtificialViscosity/AVSensor_Source2D_TwoPhase_btest.cppd4010677ab34acf669e838bcf62b736b5ced65d31592838730000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduadded #define label for pressure jump in AV sensor source; updated unit test 2020-06-22 08:12:10 -0700d4010677ab34acf669e838bcf62b736b5ced65d3added #define label for pressure jump in AV sensor source; updated unit testeditsrc/pde/ArtificialViscosity/AVSensor_Source2D.hedittest/unit/pde/ArtificialViscosity/AVSensor_Source2D_TwoPhase_btest.cpptest/system/AnalyticSolve/AnalyticSolve3D_IBLFourEqn_StagnationFlow_LamiBL_Triangle_btest.cppsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosureFourEqn_impl.ha7738e157fb87aafa2593ca9f72793b66aee281f1592881935000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadded new closure option (but commented off for now). updated system test case for four-eqn IBL3D on stagnation flow BL 2020-06-22 22:12:15 -0500a7738e157fb87aafa2593ca9f72793b66aee281fadded new closure option (but commented off for now). updated system test case for four-eqn IBL3D on stagnation flow BLeditsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosureFourEqn_impl.hedittest/system/AnalyticSolve/AnalyticSolve3D_IBLFourEqn_StagnationFlow_LamiBL_Triangle_btest.cppsrc/tools/smoothmath.htest/unit/tools/smoothmath_btest.cppc43490cb79b7a08ce7d438a2c1384c75416c748e1592972412000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduzero guard for smoothabs0 2020-06-23 21:20:12 -0700c43490cb79b7a08ce7d438a2c1384c75416c748ezero guard for smoothabs0editsrc/tools/smoothmath.hedittest/unit/tools/smoothmath_btest.cppsrc/pde/ArtificialViscosity/AVSensor_Source2D.htest/unit/Discretization/DG/SetFieldInteriorTrace_DGBR2_LiftedQuantity_TwoPhaseAV_btest.cpptest/unit/Discretization/DG/JacobianCell_DGBR2_LiftedQuantity_TwoPhaseAV_btest.cpptest/unit/Discretization/DG/ResidualCell_DGBR2_LiftedQuantity_TwoPhaseAV_btest.cpp40fbb706ad9cacd6cbe76b593ac4ec4f644c965b1592972802000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduupdated unit tests to incorporate pressure jumps in sensor source for two-phase AV 2020-06-23 21:26:42 -070040fbb706ad9cacd6cbe76b593ac4ec4f644c965bupdated unit tests to incorporate pressure jumps in sensor source for two-phase AVedittest/unit/Discretization/DG/JacobianCell_DGBR2_LiftedQuantity_TwoPhaseAV_btest.cppeditsrc/pde/ArtificialViscosity/AVSensor_Source2D.hedittest/unit/Discretization/DG/ResidualCell_DGBR2_LiftedQuantity_TwoPhaseAV_btest.cppedittest/unit/Discretization/DG/SetFieldInteriorTrace_DGBR2_LiftedQuantity_TwoPhaseAV_btest.cpptest/unit/Meshing/EGTess/CMakeLists.txttest/unit/pde/FullPotential/CMakeLists.txtscripts/jenkins/cmake_jenkins.shtest/unit/Meshing/avro/CMakeLists.txttest/unit/Adaptation/MOESS/NLOPT/CMakeLists.txtsrc/UserInterfaces/PythonUI/CMakeLists.txttest/unit/UnitGrids/CMakeLists.txttest/system/Adaptation/CMakeLists.txtCMakeLists.txttest/unit/Adaptation/MOESS/CMakeLists.txtCMakeInclude/Finds/FindTETGEN.cmakeCMakeInclude/Builds/BuildPETSC.cmakeCMakeInclude/Builds/BuildBoost.cmaketest/unit/UserInterfaces/CMakeLists.txtCMakeInclude/Dependencies.cmaketest/unit/Adaptation/MOESS/TAO/CMakeLists.txttest/unit/Adaptation/MOESS/MMA/CMakeLists.txtaf5643524c6e4eca0e309a5fffcaf2069d9e341e1593032019000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUse 2 MPI processors on macOS with Jenkins. Make TetGen optional again. 2020-06-24 16:53:39 -0400af5643524c6e4eca0e309a5fffcaf2069d9e341eUse 2 MPI processors on macOS with Jenkins. Make TetGen optional again.edittest/unit/Adaptation/MOESS/TAO/CMakeLists.txteditCMakeInclude/Finds/FindTETGEN.cmakeeditCMakeInclude/Builds/BuildPETSC.cmakeedittest/unit/Adaptation/MOESS/MMA/CMakeLists.txtedittest/unit/UserInterfaces/CMakeLists.txtedittest/unit/Adaptation/MOESS/NLOPT/CMakeLists.txteditCMakeInclude/Builds/BuildBoost.cmakeedittest/unit/pde/FullPotential/CMakeLists.txteditCMakeInclude/Dependencies.cmakeeditCMakeLists.txtedittest/unit/Meshing/EGTess/CMakeLists.txtedittest/unit/Meshing/avro/CMakeLists.txtedittest/system/Adaptation/CMakeLists.txteditscripts/jenkins/cmake_jenkins.sheditsrc/UserInterfaces/PythonUI/CMakeLists.txtedittest/unit/Adaptation/MOESS/CMakeLists.txtedittest/unit/UnitGrids/CMakeLists.txtCMakeInclude/Dependencies.cmakec5f8571159ad5ae2ca8d30695827230b3c3ee2121593032950000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix for finding boost 2020-06-24 17:09:10 -0400c5f8571159ad5ae2ca8d30695827230b3c3ee212Fix for finding boosteditCMakeInclude/Dependencies.cmakesrc/pde/TCNE/Q1DTCNEConservative.htest/unit/pde/TCNE/Q1DConservative_btest.cppsrc/pde/TCNE/TCNEChemistryModels.htest/unit/pde/TCNE/PDETCNEEuler1D_btest.cpptest/unit/pde/TCNE/TCNEChemistryModels_btest.cppde14dd0d9ebd1dc1b9d06f269b3e61daf71c7fff1593032953000https://acdl.mit.edu/csi/user/ksaboksaboksabo@mit.eduSome chemsitry model unit tests - need before source term testing. 2020-06-24 14:09:13 -0700de14dd0d9ebd1dc1b9d06f269b3e61daf71c7fffSome chemsitry model unit tests - need before source term testing.editsrc/pde/TCNE/Q1DTCNEConservative.heditsrc/pde/TCNE/TCNEChemistryModels.hedittest/unit/pde/TCNE/TCNEChemistryModels_btest.cppedittest/unit/pde/TCNE/Q1DConservative_btest.cppedittest/unit/pde/TCNE/PDETCNEEuler1D_btest.cppscripts/jenkins/cmake_jenkins.sh97524f0d5e74a445ab8568bb8658d69286aa13051593034083000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix for 2 MPI procs on macOS 2020-06-24 17:28:03 -040097524f0d5e74a445ab8568bb8658d69286aa1305Fix for 2 MPI procs on macOSeditscripts/jenkins/cmake_jenkins.shtest/unit/UserInterfaces/CMakeLists.txttest/system/Adaptation/CMakeLists.txtCMakeInclude/Builds/BuildBoost.cmaketest/unit/Meshing/avro/CMakeLists.txt8633f561561e380e62c6503fdff3a058faa6e0441593088397000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduVarious CMake fixes 2020-06-25 08:33:17 -04008633f561561e380e62c6503fdff3a058faa6e044Various CMake fixesedittest/system/Adaptation/CMakeLists.txteditCMakeInclude/Builds/BuildBoost.cmakeedittest/unit/UserInterfaces/CMakeLists.txtedittest/unit/Meshing/avro/CMakeLists.txtCMakeInclude/Builds/BuildBoost.cmake5fadf3ea7a29df99089e97496fb8637574bf80751593174714000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix BuildBoost 2020-06-26 08:31:54 -04005fadf3ea7a29df99089e97496fb8637574bf8075Fix BuildBoosteditCMakeInclude/Builds/BuildBoost.cmakesrc/pde/TCNE/TCNEChemistryModels.htest/unit/pde/TCNE/TCNEChemistryModels_btest.cpp4292adb2b1474940d70ca01dd4dcf634c7306a4e1593200627000https://acdl.mit.edu/csi/user/ksaboksaboksabo@mit.eduvibrational relaxation time unit tests 2020-06-26 12:43:47 -07004292adb2b1474940d70ca01dd4dcf634c7306a4evibrational relaxation time unit testsedittest/unit/pde/TCNE/TCNEChemistryModels_btest.cppeditsrc/pde/TCNE/TCNEChemistryModels.hsrc/Field/output_Points.cppsrc/Meshing/EGADS/EGObject.hsrc/UserInterfaces/capsAIM/capsMesh.hsrc/Meshing/EGADS/solidBoolean.hsrc/Field/Partition/XField_Lagrange_Distribute_impl.hsrc/UserInterfaces/CMakeLists.txtsrc/Meshing/EGADS/EGObject.cppsrc/UserInterfaces/capsAIM/capsMesh.cppsrc/Field/Partition/LagrangeElementGroup.cppsrc/Field/Partition/LagrangeElementGroup.hsrc/Field/Partition/XField_Lagrange_impl.hsrc/UserInterfaces/capsAIM/CMakeLists.txtsrc/Meshing/EGTess/EGTessBody.hsrc/Field/Partition/XField_Lagrange.hsrc/UserInterfaces/capsAIM/intersectWake.cppsrc/Meshing/EGTess/EGTessModel.cppsrc/Meshing/EGTess/EGTessModel.hsrc/UserInterfaces/LIPSolver.hsrc/Meshing/refine/MesherInterface_refine.cppsrc/Field/output_Points.hsrc/UserInterfaces/capsAIM/sansLIPAIM.cppsrc/UserInterfaces/LIPSolver.cpp74fc51222038b9d7ea437e14de5dec012782784d1593201453000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduLIP solver can consume CAPS mesh 2020-06-26 15:57:33 -040074fc51222038b9d7ea437e14de5dec012782784dLIP solver can consume CAPS mesheditsrc/Field/output_Points.cppeditsrc/Meshing/refine/MesherInterface_refine.cppeditsrc/UserInterfaces/CMakeLists.txteditsrc/Field/Partition/XField_Lagrange.haddsrc/UserInterfaces/capsAIM/capsMesh.cppeditsrc/Meshing/EGTess/EGTessModel.haddsrc/UserInterfaces/capsAIM/capsMesh.heditsrc/Meshing/EGADS/EGObject.cppeditsrc/UserInterfaces/capsAIM/intersectWake.cppeditsrc/Field/Partition/LagrangeElementGroup.cppeditsrc/UserInterfaces/LIPSolver.heditsrc/UserInterfaces/capsAIM/sansLIPAIM.cppeditsrc/Meshing/EGADS/solidBoolean.heditsrc/Meshing/EGADS/EGObject.heditsrc/Field/output_Points.heditsrc/Field/Partition/XField_Lagrange_Distribute_impl.heditsrc/Field/Partition/LagrangeElementGroup.heditsrc/UserInterfaces/capsAIM/CMakeLists.txteditsrc/UserInterfaces/LIPSolver.cppeditsrc/Field/Partition/XField_Lagrange_impl.heditsrc/Meshing/EGTess/EGTessBody.heditsrc/Meshing/EGTess/EGTessModel.cppCMakeInclude/Checks/CheckEGADS.cmake91ab1b5f653cb9673ca53512f5e4680416746f0d1593205248000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdate minimum ESP version to 1.18 2020-06-26 17:00:48 -040091ab1b5f653cb9673ca53512f5e4680416746f0dUpdate minimum ESP version to 1.18editCMakeInclude/Checks/CheckEGADS.cmakesrc/UserInterfaces/capsAIM/intersectWake.cppsrc/Meshing/EGADS/solidBoolean.h01899f2f404c880717bf5556280b22b8948b2d591593206567000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduRelax EGADS version requirement 2020-06-26 17:22:47 -040001899f2f404c880717bf5556280b22b8948b2d59Relax EGADS version requirementeditsrc/UserInterfaces/capsAIM/intersectWake.cppeditsrc/Meshing/EGADS/solidBoolean.hsrc/UserInterfaces/PythonUI/CMakeLists.txtc9984139849d72da66b4682e8e5e397d8573bcaa1593292183000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix link error 2020-06-27 17:09:43 -0400c9984139849d72da66b4682e8e5e397d8573bcaaFix link erroreditsrc/UserInterfaces/PythonUI/CMakeLists.txtCMakeInclude/Checks/CheckEGADS.cmake4d653c731131786b26e1e6ff71ecc0badb6a49421593292210000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMissed a file 2020-06-27 17:10:10 -04004d653c731131786b26e1e6ff71ecc0badb6a4942Missed a fileeditCMakeInclude/Checks/CheckEGADS.cmaketest/unit/UserInterfaces/LIPSolver_btest.cpptest/unit/UserInterfaces/CMakeLists.txtsrc/UserInterfaces/CMakeLists.txtsrc/UserInterfaces/PythonUI/CMakeLists.txtCMakeInclude/Dependencies.cmake59c924261a83c193d8b459fdaf613bf58742f3531593296021000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMore link error fixes 2020-06-27 18:13:41 -040059c924261a83c193d8b459fdaf613bf58742f353More link error fixeseditCMakeInclude/Dependencies.cmakeeditsrc/UserInterfaces/PythonUI/CMakeLists.txtedittest/unit/UserInterfaces/LIPSolver_btest.cppedittest/unit/UserInterfaces/CMakeLists.txteditsrc/UserInterfaces/CMakeLists.txtCMakeLists.txtsrc/UserInterfaces/capsAIM/CMakeLists.txt3f417876f021d6b936aaeb397f6a8f234f59005d1593300573000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMore link fixes 2020-06-27 19:29:33 -04003f417876f021d6b936aaeb397f6a8f234f59005dMore link fixeseditsrc/UserInterfaces/capsAIM/CMakeLists.txteditCMakeLists.txtsrc/Field/XField.hsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver.cppsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver.cppsrc/Meshing/EGADS/EGObject.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver.cppsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver.hsrc/Meshing/EGADS/EGStatus.cppsrc/Optimization/Methods/Linear/GLPK/GLPKSolver.hsrc/LinearAlgebra/DenseLinAlg/tools/SingularException.cppsrc/Meshing/EGADS/EGObject.cppsrc/Adaptation/MOESS/TAO/TAOException.hsrc/Meshing/EGADS/EGStatus.hsrc/Optimization/Methods/Linear/LOptSolver.cppsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver.hsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver.hCMakeInclude/Dependencies.cmakesrc/Field/XFieldException.cppsrc/LinearAlgebra/DenseLinAlg/tools/SingularException.he4eea60f2d206df49165523d6e5eb5fbf7cdda3f1593441190000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduExlicit Exception instantiations. Bias for Python 3 with CMake 2020-06-29 10:33:10 -0400e4eea60f2d206df49165523d6e5eb5fbf7cdda3fExlicit Exception instantiations. Bias for Python 3 with CMakeeditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver.cppeditsrc/Meshing/EGADS/EGStatus.heditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver.cppeditsrc/Meshing/EGADS/EGObject.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver.cppeditsrc/Adaptation/MOESS/TAO/TAOException.heditsrc/Field/XFieldException.cppeditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver.heditsrc/Meshing/EGADS/EGStatus.cppeditsrc/LinearAlgebra/DenseLinAlg/tools/SingularException.cppeditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver.heditsrc/Field/XField.heditsrc/LinearAlgebra/DenseLinAlg/tools/SingularException.heditCMakeInclude/Dependencies.cmakeeditsrc/Optimization/Methods/Linear/LOptSolver.cppeditsrc/Meshing/EGADS/EGObject.cppeditsrc/Optimization/Methods/Linear/GLPK/GLPKSolver.hsrc/Discretization/Block/AlgebraicEquationSet_Block2x2.hsrc/Discretization/Block/AlgebraicEquationSet_Block2x2_impl.h733960bdb8b3ec47aca5b1602a64cf19896ef0011593444043000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadded continuousGlobalMap() for block 2x2 AES 2020-06-29 10:20:43 -0500733960bdb8b3ec47aca5b1602a64cf19896ef001added continuousGlobalMap() for block 2x2 AESeditsrc/Discretization/Block/AlgebraicEquationSet_Block2x2.heditsrc/Discretization/Block/AlgebraicEquationSet_Block2x2_impl.htest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cppsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixS_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_3x3_Instantiate.cpptest/sandbox/Solve3D_Uncoupled_IBL_FlatPlate_Blasius_toy.cpp2b7776bfb5c7d3fc3d088d3345a7f724aab487801593470152000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduPETSc now works for coupled IBL3 block AES 3x3 2020-06-29 17:35:52 -05002b7776bfb5c7d3fc3d088d3345a7f724aab48780PETSc now works for coupled IBL3 block AES 3x3edittest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cppeditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_3x3_Instantiate.cppeditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixS_Instantiate.cppedittest/sandbox/Solve3D_Uncoupled_IBL_FlatPlate_Blasius_toy.cpptest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cppsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosure_impl.htest/sandbox/Solve3D_Coupled3x3_IBLFourEqn_FlatPlate_torpedo_agrid45_toy.cpp64afdcf14b171301ce25548481d2ed6ff01557071593532004000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduminor refactoring 2020-06-30 10:46:44 -050064afdcf14b171301ce25548481d2ed6ff0155707minor refactoringedittest/sandbox/Solve3D_Coupled3x3_IBLFourEqn_FlatPlate_torpedo_agrid45_toy.cppedittest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cppeditsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosure_impl.htest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid0_toy.cpptest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cpptest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_toy.cppd38051514dd98d5491ad86e8068e68d2673a48d91593550950000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.educleaned up and merged sandbox cases 2020-06-30 16:02:30 -0500d38051514dd98d5491ad86e8068e68d2673a48d9cleaned up and merged sandbox casesdeletetest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid45_toy.cppdeletetest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_agrid0_toy.cppaddtest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_toy.cppsrc/pde/IBL/PDEIBL3D.hsrc/pde/IBL/PDEIBLSplitAmpLag2D.hsrc/pde/IBL/PDEIBLFourEqn3D.he2205c95bc31bc92bcb5552972b3d03f840a89fb1593568655000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduuse reference velocity scale consistently 2020-06-30 20:57:35 -0500e2205c95bc31bc92bcb5552972b3d03f840a89fbuse reference velocity scale consistentlyeditsrc/pde/IBL/PDEIBL3D.heditsrc/pde/IBL/PDEIBLSplitAmpLag2D.heditsrc/pde/IBL/PDEIBLFourEqn3D.hsrc/pde/IBL/ElementProjectionOutputIBL3D.hsrc/pde/IBL/PDEIBL3D.hsrc/pde/IBL/ClosureRelations3D_Nishida.htest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_toy.cppsrc/pde/IBL/FluidModels.cppsrc/pde/IBL/FluidModels.hsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosure_impl.h6280aec3b1dd0921c4c708708dfb116a78f171c91593568744000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduturned on quasi-2D closure relations for 3-eq 3D IBL 2020-06-30 20:59:04 -05006280aec3b1dd0921c4c708708dfb116a78f171c9turned on quasi-2D closure relations for 3-eq 3D IBLeditsrc/pde/IBL/PDEIBL3D.heditsrc/pde/IBL/FluidModels.cppeditsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosure_impl.heditsrc/pde/IBL/ElementProjectionOutputIBL3D.hedittest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_toy.cppeditsrc/pde/IBL/ClosureRelations3D_Nishida.heditsrc/pde/IBL/FluidModels.htest/sandbox/Solve3D_CG_NACA_FP_Drela_toy.cpptest/sandbox/Solve3D_CG_NACA_LIP_toy.cpptest/sandbox/Solve3D_CG_NACA_LIP_Darmofal_toy.cppsrc/Adaptation/MOESS/TAO/TAOException.cpptest/sandbox/Solve3D_CG_NACA_LIP2_toy.cpptest/sandbox/Solve3D_CG_NACA_LIP_Drela_toy.cpp433c3a753e4cd78ccb37a055838301b50e16506f1593614551000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMissed one instantiation. More optional TetGen fixes 2020-07-01 10:42:31 -0400433c3a753e4cd78ccb37a055838301b50e16506fMissed one instantiation. More optional TetGen fixeseditsrc/Adaptation/MOESS/TAO/TAOException.cppedittest/sandbox/Solve3D_CG_NACA_LIP2_toy.cppedittest/sandbox/Solve3D_CG_NACA_LIP_Darmofal_toy.cppedittest/sandbox/Solve3D_CG_NACA_LIP_Drela_toy.cppedittest/sandbox/Solve3D_CG_NACA_LIP_toy.cppedittest/sandbox/Solve3D_CG_NACA_FP_Drela_toy.cpptest/sandbox/Solve3D_CG_NACA_LIP_toy.cppscripts/jenkins/jenkins_env.shCMakeInclude/Compiler.cmakeCMakeInclude/Dependencies.cmake8a8951e1c3b735eb47f3dd2fc7977fd5853934381593658575000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduVarious small fixes 2020-07-01 22:56:15 -04008a8951e1c3b735eb47f3dd2fc7977fd585393438Various small fixesedittest/sandbox/Solve3D_CG_NACA_LIP_toy.cppeditCMakeInclude/Compiler.cmakeeditCMakeInclude/Dependencies.cmakeeditscripts/jenkins/jenkins_env.shsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_3x3_Instantiate.cppd85a2be848c64709aa6a3697fff796ee6a48a5761593705253000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadded exceptions for petsc MPI implementations for block AES 3x3 2020-07-02 10:54:13 -0500d85a2be848c64709aa6a3697fff796ee6a48a576added exceptions for petsc MPI implementations for block AES 3x3editsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_3x3_Instantiate.cppsrc/pde/IBL/PDEIBL3D.h80bf6666d1d98131e2b320292de9e9cc5a1d91771593705293000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduturned off 3D IBL transition and lag equations for system test (for now) 2020-07-02 10:54:53 -050080bf6666d1d98131e2b320292de9e9cc5a1d9177turned off 3D IBL transition and lag equations for system test (for now)editsrc/pde/IBL/PDEIBL3D.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_3x3_Instantiate.cpp02a4c5820f079989c2b86dce7ac907f406ed36d21593712212000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduturned off some TBD MPI stuff in petsc block AES 3x3 to avoid compiling errors 2020-07-02 12:50:12 -050002a4c5820f079989c2b86dce7ac907f406ed36d2turned off some TBD MPI stuff in petsc block AES 3x3 to avoid compiling errorseditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_3x3_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_3x3_Instantiate.cpp1865d529f8b7f5311a4ea970cb9e57bff634f1f21593725033000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edufixed unused variable warnings 2020-07-02 16:23:53 -05001865d529f8b7f5311a4ea970cb9e57bff634f1f2fixed unused variable warningseditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_3x3_Instantiate.cpptest/sandbox/Solve3D_Uncoupled_IBL_FlatPlate_Blasius_toy.cppb9b399588599f3cc7172b2b47d79b630308f4a021593734681000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edufix compiling error in sandbox case 2020-07-02 19:04:41 -0500b9b399588599f3cc7172b2b47d79b630308f4a02fix compiling error in sandbox caseedittest/sandbox/Solve3D_Uncoupled_IBL_FlatPlate_Blasius_toy.cppsrc/pde/IBL/ElementProjectionOutputIBL3D.hsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosureFourEqn_impl.hsrc/pde/IBL/PDEIBLFourEqn3D.htest/sandbox/Solve3D_Coupled3x3_IBLFourEqn_FlatPlate_torpedo_agrid45_toy.cpptest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_toy.cpp0e9f4f81546c2f5c473825082ad3dbb3c33703521593987501000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded quasi-2D turbulent closure to four-eqn IBL3 formulation 2020-07-05 17:18:21 -05000e9f4f81546c2f5c473825082ad3dbb3c3370352Added quasi-2D turbulent closure to four-eqn IBL3 formulationedittest/sandbox/Solve3D_Coupled3x3_IBLFourEqn_FlatPlate_torpedo_agrid45_toy.cppeditsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosureFourEqn_impl.heditsrc/pde/IBL/PDEIBLFourEqn3D.heditsrc/pde/IBL/ElementProjectionOutputIBL3D.hedittest/sandbox/Solve3D_Coupled3x3_IBL_FlatPlate_torpedo_toy.cppsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosureFourEqn_impl.h90ef2c394c172974ecb098b5bc593c3bbf0467a21593987582000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edufixed deprecated macro 2020-07-05 17:19:42 -050090ef2c394c172974ecb098b5bc593c3bbf0467a2fixed deprecated macroeditsrc/pde/IBL/ThicknessesCoefficients3D_CorrelationClosureFourEqn_impl.hsrc/pde/ArtificialViscosity/AVSensor_Source2D.htest/unit/SolutionTrek/Continuation/Homotopy_btest.cpptest/sandbox/Solve2D_VMSDBR2_HOW5_VI2_HTC_toy.cppsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion2D.htest/sandbox/Adapt2D_VMSDBR2_NavierStokes_Blottner_Mach20_AV_HTC_toy.cpptest/sandbox/Solve1D_HDG_Burgers_HTC_toy.cppsrc/pde/NS/BCEulermitAVSensor2D.htest/unit/pde/SourceOnly/PDESourceOnly2D_btest.cppsrc/pde/NS/PDEEulermitAVDiffusion2D.hsrc/pde/ArtificialViscosity/PDEmitAVSensor2D.hsrc/Field/output_Tecplot_PDE.hsrc/pde/NS/BCEuler2D_mitState.hsrc/Adaptation/MOESS/ParamFieldBuilder.htest/sandbox/Solve2D_VMSDBR2_RadialShock_AV_HTC_toy.cpptest/unit/Adaptation/MOESS/ParamFieldBuilder_btest.cppsrc/pde/ArtificialViscosity/AVSensor_ViscousFlux2D.htest/sandbox/Solve1D_Lorenz_HTC_toy.cppsrc/pde/SourceOnly/PDESourceOnly2D.hsrc/SolutionTrek/Continuation/Homotopy/Homotopy.hsrc/pde/NS/PDEEuler2D.hsrc/pde/NS/BCNavierStokes2D.htest/system/CodeConsistency/PDESourceOnly_Projection_btest.cpp5dfa6eeaa165456469a21551f29637ce7468dd2f1594339656000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduFirst set of updates from cleaning up develop branch. Contains code and tests related to adding a spatially varying a-field (i.e. from previous adapt soln) in Homotopy 2020-07-09 20:07:36 -04005dfa6eeaa165456469a21551f29637ce7468dd2fFirst set of updates from cleaning up develop branch. Contains code and tests related to adding a spatially varying a-field (i.e. from previous adapt soln) in Homotopyeditsrc/pde/NS/PDEEuler2D.hedittest/sandbox/Solve1D_Lorenz_HTC_toy.cppedittest/sandbox/Solve1D_HDG_Burgers_HTC_toy.cppdeletetest/sandbox/Solve2D_VMSDBR2_RadialShock_AV_HTC_toy.cppedittest/unit/Adaptation/MOESS/ParamFieldBuilder_btest.cppeditsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion2D.heditsrc/pde/ArtificialViscosity/PDEmitAVSensor2D.heditsrc/pde/NS/BCEulermitAVSensor2D.hedittest/unit/pde/SourceOnly/PDESourceOnly2D_btest.cppeditsrc/pde/NS/BCEuler2D_mitState.heditsrc/pde/NS/BCNavierStokes2D.heditsrc/pde/NS/PDEEulermitAVDiffusion2D.heditsrc/pde/SourceOnly/PDESourceOnly2D.heditsrc/pde/ArtificialViscosity/AVSensor_Source2D.heditsrc/SolutionTrek/Continuation/Homotopy/Homotopy.heditsrc/Field/output_Tecplot_PDE.heditsrc/pde/ArtificialViscosity/AVSensor_ViscousFlux2D.heditsrc/Adaptation/MOESS/ParamFieldBuilder.hedittest/sandbox/Solve2D_VMSDBR2_HOW5_VI2_HTC_toy.cppaddtest/system/CodeConsistency/PDESourceOnly_Projection_btest.cppaddtest/sandbox/Adapt2D_VMSDBR2_NavierStokes_Blottner_Mach20_AV_HTC_toy.cppedittest/unit/SolutionTrek/Continuation/Homotopy_btest.cppsrc/pde/NS/PDERANSSA_Source3D.hsrc/pde/NS/PDERANSSA2D.htest/unit/Discretization/VMSDBR2/CMakeLists.txtsrc/pde/NDConvert/PDENDConvertSpaceTime1D.hsrc/pde/ArtificialViscosity/PDEmitAVSensor3D.htest/unit/pde/NS/PDENavierStokes2D_btest.cpptest/unit/pde/NDConvert/PDENDConvert3D_AD_btest.cpptest/unit/pde/AdvectionDiffusion/PDEAdvectionDiffusion1D_btest.cppsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion1D.hsrc/pde/NS/PDERANSSA_Brenner2D.hsrc/pde/NS/PDEEulermitAVDiffusion3D.htest/unit/pde/NS/PDEEuler1D_btest.cppsrc/pde/NDConvert/PDENDConvertSpace2D.hsrc/pde/NS/PDEEuler3D.hsrc/pde/ArtificialViscosity/AVSensor_Source2D.htest/unit/pde/ArtificialViscosity/AVSensor_Source3D_Euler_btest.cppsrc/pde/NS/PDERANSSA3D.htest/unit/Field/Element/CMakeLists.txttest/unit/pde/NDConvert/PDENDConvert1D_AD_btest.cpptest/unit/pde/NDConvert/PDENDConvert2D_AD_btest.cpptest/unit/pde/IBL/BCIBLUniField2D_btest.cppsrc/pde/SourceOnly/PDESourceOnly2D.hsrc/pde/AdvectionDiffusion/Source1D.hsrc/pde/NS/PDERANSSA_Source2D.hsrc/pde/NS/PDEEuler2D.hsrc/LinearAlgebra/SparseLinAlg/WriteMatrixMarketFile.cppsrc/pde/NDConvert/PDENDConvertSpace1D.hsrc/pde/NS/BCEulermitAVSensor3D.hsrc/Meshing/ugrid/XFieldVolume_ugrid.cpptest/unit/pde/NS/PDEEuler2D_btest.cppsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion3D.hsrc/pde/NDConvert/PDENDConvertSpaceTime3D.hsrc/pde/ArtificialViscosity/AVSensor_Source3D.hsrc/LinearAlgebra/SparseLinAlg/WriteMatrixMarketFile.hsrc/pde/NS/Q2DEntropy.htest/unit/pde/NS/PDERANSSA3D_btest.cpptest/unit/Discretization/VMSDBR2/ProjectL2_VMSD_BR2_Source_btest.cppsrc/Discretization/VMSDBR2/IntegrandTrace_VMSD_BR2.htest/unit/pde/AdvectionDiffusion/PDEAdvectionDiffusion2D_btest.cppsrc/pde/AdvectionDiffusion/Source2D.hsrc/pde/NS/PDEEuler1D.htest/unit/pde/NS/PDERANSSA2D_btest.cppsrc/SolutionTrek/Continuation/Homotopy/PDEHomotopy.htest/unit/Discretization/Block/CMakeLists.txtsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion2D.htest/unit/pde/SourceOnly/PDESourceOnly2D_btest.cppsrc/pde/NDConvert/PDENDConvertSpaceTime2D.hsrc/pde/NS/PDEEulermitAVDiffusion2D.htest/unit/pde/AdvectionDiffusion/PDEAdvectionDiffusion3D_btest.cppsrc/pde/ArtificialViscosity/PDEmitAVSensor2D.htest/unit/pde/NS/PDEEuler3D_btest.cppsrc/pde/AdvectionDiffusion/Source3D.hsrc/pde/Burgers/PDEBurgers1D.hsrc/pde/NS/PDEEuler1D_Source.htest/unit/pde/NS/PDENavierStokes1D_btest.cppsrc/Discretization/VMSDBR2/IntegrandCell_VMSD_BR2.hsrc/pde/NDConvert/PDENDConvertSpace3D.h227c224ef861c65bf2ce6751f8644d916bb9fc4c1594493866000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduRemoved sourceCoarse and sourceFine in lieu of sourceTraceJump 2020-07-11 14:57:46 -0400227c224ef861c65bf2ce6751f8644d916bb9fc4cRemoved sourceCoarse and sourceFine in lieu of sourceTraceJumpedittest/unit/pde/ArtificialViscosity/AVSensor_Source3D_Euler_btest.cppeditsrc/pde/NS/PDEEuler3D.hedittest/unit/pde/NDConvert/PDENDConvert1D_AD_btest.cppedittest/unit/pde/NS/PDENavierStokes1D_btest.cppedittest/unit/pde/NS/PDEEuler3D_btest.cppeditsrc/pde/NS/PDERANSSA2D.heditsrc/pde/AdvectionDiffusion/Source2D.heditsrc/pde/ArtificialViscosity/PDEmitAVSensor2D.heditsrc/pde/NS/PDERANSSA_Brenner2D.heditsrc/LinearAlgebra/SparseLinAlg/WriteMatrixMarketFile.cppeditsrc/pde/Burgers/PDEBurgers1D.hedittest/unit/pde/NDConvert/PDENDConvert3D_AD_btest.cppedittest/unit/pde/NS/PDERANSSA2D_btest.cppeditsrc/pde/SourceOnly/PDESourceOnly2D.heditsrc/pde/NS/PDERANSSA3D.hedittest/unit/Discretization/Block/CMakeLists.txteditsrc/Discretization/VMSDBR2/IntegrandCell_VMSD_BR2.heditsrc/pde/NS/PDEEulermitAVDiffusion3D.heditsrc/pde/NDConvert/PDENDConvertSpace1D.heditsrc/pde/NDConvert/PDENDConvertSpaceTime1D.heditsrc/pde/NS/PDEEuler2D.heditsrc/Discretization/VMSDBR2/IntegrandTrace_VMSD_BR2.heditsrc/pde/ArtificialViscosity/PDEmitAVSensor3D.heditsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion3D.hedittest/unit/Discretization/VMSDBR2/CMakeLists.txteditsrc/Meshing/ugrid/XFieldVolume_ugrid.cppeditsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion2D.heditsrc/pde/AdvectionDiffusion/Source3D.heditsrc/pde/NDConvert/PDENDConvertSpace3D.heditsrc/pde/ArtificialViscosity/AVSensor_Source2D.hedittest/unit/pde/AdvectionDiffusion/PDEAdvectionDiffusion1D_btest.cppeditsrc/pde/NS/BCEulermitAVSensor3D.heditsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion1D.heditsrc/pde/NS/PDEEulermitAVDiffusion2D.heditsrc/pde/NS/PDEEuler1D_Source.hedittest/unit/pde/IBL/BCIBLUniField2D_btest.cppedittest/unit/pde/SourceOnly/PDESourceOnly2D_btest.cppeditsrc/pde/ArtificialViscosity/AVSensor_Source3D.hedittest/unit/pde/AdvectionDiffusion/PDEAdvectionDiffusion3D_btest.cppedittest/unit/pde/NDConvert/PDENDConvert2D_AD_btest.cppeditsrc/SolutionTrek/Continuation/Homotopy/PDEHomotopy.hedittest/unit/pde/NS/PDENavierStokes2D_btest.cppedittest/unit/Field/Element/CMakeLists.txtedittest/unit/pde/NS/PDEEuler1D_btest.cppeditsrc/pde/AdvectionDiffusion/Source1D.heditsrc/pde/NS/PDERANSSA_Source2D.heditsrc/pde/NDConvert/PDENDConvertSpace2D.heditsrc/pde/NS/PDEEuler1D.hedittest/unit/pde/NS/PDERANSSA3D_btest.cppeditsrc/pde/NDConvert/PDENDConvertSpaceTime2D.heditsrc/pde/NS/Q2DEntropy.heditsrc/LinearAlgebra/SparseLinAlg/WriteMatrixMarketFile.heditsrc/pde/NS/PDERANSSA_Source3D.haddtest/unit/Discretization/VMSDBR2/ProjectL2_VMSD_BR2_Source_btest.cppedittest/unit/pde/AdvectionDiffusion/PDEAdvectionDiffusion2D_btest.cppeditsrc/pde/NDConvert/PDENDConvertSpaceTime3D.hedittest/unit/pde/NS/PDEEuler2D_btest.cppsrc/Adaptation/MOESS/MMA/MOESS_SANS_Optimizer_MMA/MOESS_SANS_Optimizer_MMA_impl.hsrc/pde/ForcingFunctionBase.hsrc/pde/ArtificialViscosity/AVSensor_Source1D.hsrc/Field/Element/ElementLine.hsrc/pde/FullPotential/BCLinearizedIncompressiblePotential3D.hsrc/Meshing/EGADS/Airfoils/NACA4.cppsrc/Meshing/EGADS/EGApproximate.cpptest/unit/pde/FullPotential/BCLinearizedIncompressiblePotential3D_btest.cppsrc/pde/Sensor/Source1D_JumpSensor.hsrc/Surreal/SurrealD.htest/unit/Meshing/AnalyticMetrics/MetricAnalytical_btest.cppsrc/pde/NDConvert/SolnNDConvertSpace1D.hsrc/Meshing/AnalyticMetrics/Euclidean.hsrc/pde/NDConvert/SolnNDConvertSpaceTime1D.htest/unit/pde/CauchyRiemann/PDECauchyRiemann2D_SurrealS_btest.cppsrc/Discretization/Galerkin/AlgebraicEquationSet_HubTrace_Galerkin.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized.hsrc/LinearAlgebra/Transpose.htest/unit/Surreal/SurrealS1_btest.cpptest/unit/Discretization/HDG/IntegrandCell_HDG_NS_btest.cppsrc/Adaptation/MOESS/NLOPT/ImpliedMetric_Optimizer_NLOPT/ImpliedMetric_Optimizer_NLOPT_impl.hsrc/Adaptation/MOESS/SolverInterface_VMSD.hsrc/Discretization/FV_TPFA/IntegrandInteriorTrace_FV_TPFA.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin.hsrc/Field/HField/GenHField_DG/GenHField_DG_impl.hsrc/Surreal/PromoteSurreal.hsrc/LinearAlgebra/DenseLinAlg/tools/SingularException.hsrc/pde/NDConvert/SolnNDConvertSpaceTime2D.hsrc/Adaptation/MOESS/NodalMetrics/NodalMetrics_impl.hsrc/LinearAlgebra/DenseLinAlg/tools/MatrixSize.hsrc/Meshing/EGADS/Airfoils/NACA4.hsrc/pde/ArtificialViscosity/AVSensor_Source3D.hsrc/Meshing/AnalyticMetrics/CornerSingularity.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized_LiftedBoundary.hsrc/pde/ArtificialViscosity/PDEmitAVSensor1D.hsrc/Surreal/SurrealS_Trad.hsrc/Surreal/SurrealS_Lazy.hsrc/Field/HField/GenHField_CG/GenHField_CG_impl.hsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_Log.htest/unit/pde/NS/PDENavierStokes3D_btest.cppsrc/LinearAlgebra/DenseLinAlg/tools/index.hsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_Exp.hsrc/Adaptation/MOESS/SolverInterface_VMSD_BR2.hsrc/Discretization/DG/IntegrandInteriorTrace_DGBR2.htest/unit/LinearAlgebra/DenseLinAlg/MatrixS_SurrealS_btest.cppsrc/pde/AnalyticFunction/ScalarFunction1D.hsrc/LinearAlgebra/TransposeTraits.hsrc/pde/FullPotential/BCIncompressiblePotentialTwoField2D_sansLG.cppsrc/Surreal/SurrealS.hsrc/MPI/serialize_SurrealS.htest/unit/LinearAlgebra/DenseLinAlg/VectorS_SurrealS_deriv_btest.cppsrc/Field/tools/Surrealize.hsrc/LinearAlgebra/DenseLinAlg/StaticSize/SVD/MatrixS_SVD_1x1.cppsrc/Adaptation/MOESS/ProblemStatement_HDG_ErrorEstimate.hsrc/Adaptation/MOESS/SolverInterface_DGBR2_Block2x2.hsrc/LinearAlgebra/DenseLinAlg/tools/norm2.htest/unit/Meshing/EGADS/EGApproximate_btest.cppsrc/Meshing/EGADS/EGApproximate.hsrc/Adaptation/MOESS/SolverInterface_AGLS_LiftedBoundary.hsrc/pde/ArtificialViscosity/PDEmitAVSensor3D.htest/unit/pde/NS/PDENavierStokes2D_btest.cppsrc/Adaptation/MOESS/TAO/ImpliedMetric_Optimizer_TAO/ImpliedMetric_Optimizer_TAO_impl.hsrc/Adaptation/MOESS/NLOPT/MOESS_SANS_Optimizer_NLOPT/MOESS_SANS_Optimizer_NLOPT_impl.htest/unit/Surreal/SurrealS4_btest.cppsrc/pde/NS/HLLC2D.hsrc/Surreal/SurrealD_Lazy.hsrc/Field/Element/TraceUnitNormal.hsrc/pde/NS/SolutionFunction_Euler2D.hsrc/pde/ArtificialViscosity/AVSensor_Source2D.hsrc/Discretization/DG/IntegrandBoundaryTrace_LinearScalar_sansLG_DGBR2.hsrc/Surreal/SurrealS_Type.htest/unit/LinearAlgebra/DenseLinAlg/VectorS_SurrealS_btest.cppsrc/pde/IBL/AlgebraicEquationSet_ProjectToQauxv_PanelMethod.hsrc/pde/Sensor/Source2D_JumpSensor.hsrc/BasisFunction/Quadrature_Cache.hsrc/Field/Element/ElementXFieldLine.hsrc/Meshing/EGADS/EGStatus.hsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_Pow.htest/unit/LinearAlgebra/DenseLinAlg/MatrixSymS_Log_btest.cppsrc/Adaptation/MOESS/SolverInterface_Galerkin.htest/unit/LinearAlgebra/DenseLinAlg/MatrixD_BlockView_btest.cppsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Conservative.hsrc/Meshing/AnalyticMetrics/XField.cppsrc/LinearAlgebra/DenseLinAlg/tools/norm.hsrc/pde/NDConvert/SolnNDConvertSpace2D.hsrc/Adaptation/MOESS/SolverInterface_DGBR2.hsrc/Adaptation/MOESS/TAO/MOESS_SANS_Optimizer_TAO/MOESS_SANS_Optimizer_TAO_impl.hsrc/Surreal/SurrealD_Trad.htest/unit/LinearAlgebra/DenseLinAlg/MatrixSymS_Exp_btest.cppsrc/pde/FullPotential/BCLinearizedIncompressiblePotential3D.cppsrc/Meshing/AnalyticMetrics/XField.hsrc/pde/NDConvert/SolnNDConvertSpace3D.hsrc/pde/NDConvert/SolnNDConvertSpaceTime3D.hsrc/tools/minmax.hsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_Mul.hsrc/pde/IBL/AlgebraicEquationSet_ProjectToQauxv_PiecewiseConstSourcePanel_FlatPlate3D.hsrc/Meshing/AnalyticMetrics/CornerSingularity.cppsrc/LinearAlgebra/DenseLinAlg/tools/VectorSize.hsrc/Surreal/SurrealS_Reverse.hsrc/pde/ArtificialViscosity/PDEmitAVSensor2D.hsrc/LinearAlgebra/SparseLinAlg/Preconditioners/ILU0.hsrc/Adaptation/MOESS/SolverInterface_DGAdvective.hsrc/Discretization/Galerkin/AlgebraicEquationSet_HubTrace_Galerkin_cutCellTransitionIBL.hsrc/pde/NS/SolutionFunction_Euler1D.hsrc/pde/FullPotential/BCLinearizedIncompressiblePotential2D_sansLG.cppsrc/Meshing/AnalyticMetrics/BoundaryLayer.cpp9335a34a6e71e9cba13c4a24cc5e238cd4abdfc71594571971000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMove Surreal into SANS namespace 2020-07-12 12:39:31 -04009335a34a6e71e9cba13c4a24cc5e238cd4abdfc7Move Surreal into SANS namespaceeditsrc/pde/IBL/AlgebraicEquationSet_ProjectToQauxv_PiecewiseConstSourcePanel_FlatPlate3D.heditsrc/pde/ArtificialViscosity/AVSensor_Source1D.hedittest/unit/pde/NS/PDENavierStokes3D_btest.cppeditsrc/pde/NDConvert/SolnNDConvertSpaceTime2D.heditsrc/Meshing/EGADS/EGApproximate.cppeditsrc/pde/ForcingFunctionBase.heditsrc/pde/AnalyticFunction/ScalarFunction1D.heditsrc/pde/ArtificialViscosity/PDEmitAVSensor3D.heditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_Pow.heditsrc/pde/FullPotential/BCLinearizedIncompressiblePotential3D.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin.heditsrc/Field/HField/GenHField_DG/GenHField_DG_impl.heditsrc/pde/ArtificialViscosity/AVSensor_Source2D.heditsrc/LinearAlgebra/TransposeTraits.heditsrc/Adaptation/MOESS/NodalMetrics/NodalMetrics_impl.hedittest/unit/LinearAlgebra/DenseLinAlg/VectorS_SurrealS_btest.cppeditsrc/pde/NS/HLLC2D.heditsrc/Surreal/SurrealS.heditsrc/pde/NDConvert/SolnNDConvertSpaceTime1D.hedittest/unit/Discretization/HDG/IntegrandCell_HDG_NS_btest.cppedittest/unit/LinearAlgebra/DenseLinAlg/MatrixS_SurrealS_btest.cppeditsrc/pde/FullPotential/BCIncompressiblePotentialTwoField2D_sansLG.cppeditsrc/MPI/serialize_SurrealS.heditsrc/Adaptation/MOESS/SolverInterface_DGAdvective.heditsrc/Meshing/AnalyticMetrics/Euclidean.heditsrc/pde/NDConvert/SolnNDConvertSpace3D.heditsrc/Adaptation/MOESS/MMA/MOESS_SANS_Optimizer_MMA/MOESS_SANS_Optimizer_MMA_impl.heditsrc/tools/minmax.heditsrc/pde/FullPotential/BCLinearizedIncompressiblePotential3D.cppeditsrc/LinearAlgebra/DenseLinAlg/tools/norm.heditsrc/Surreal/SurrealD.hedittest/unit/pde/FullPotential/BCLinearizedIncompressiblePotential3D_btest.cppedittest/unit/LinearAlgebra/DenseLinAlg/VectorS_SurrealS_deriv_btest.cppeditsrc/Surreal/SurrealD_Trad.heditsrc/Meshing/EGADS/EGStatus.heditsrc/Adaptation/MOESS/SolverInterface_DGBR2.hedittest/unit/Surreal/SurrealS1_btest.cppeditsrc/pde/ArtificialViscosity/AVSensor_Source3D.hedittest/unit/pde/CauchyRiemann/PDECauchyRiemann2D_SurrealS_btest.cppedittest/unit/pde/NS/PDENavierStokes2D_btest.cppeditsrc/Adaptation/MOESS/SolverInterface_Galerkin.heditsrc/Adaptation/MOESS/NLOPT/MOESS_SANS_Optimizer_NLOPT/MOESS_SANS_Optimizer_NLOPT_impl.heditsrc/pde/NDConvert/SolnNDConvertSpace2D.heditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_Log.heditsrc/LinearAlgebra/DenseLinAlg/tools/index.heditsrc/Discretization/DG/IntegrandBoundaryTrace_LinearScalar_sansLG_DGBR2.heditsrc/Meshing/AnalyticMetrics/CornerSingularity.cppeditsrc/Adaptation/MOESS/TAO/MOESS_SANS_Optimizer_TAO/MOESS_SANS_Optimizer_TAO_impl.heditsrc/Surreal/SurrealD_Lazy.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_HubTrace_Galerkin_cutCellTransitionIBL.heditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Conservative.heditsrc/pde/IBL/AlgebraicEquationSet_ProjectToQauxv_PanelMethod.heditsrc/Meshing/EGADS/Airfoils/NACA4.cppedittest/unit/LinearAlgebra/DenseLinAlg/MatrixD_BlockView_btest.cppeditsrc/Surreal/SurrealS_Trad.heditsrc/LinearAlgebra/DenseLinAlg/tools/SingularException.heditsrc/LinearAlgebra/DenseLinAlg/StaticSize/SVD/MatrixS_SVD_1x1.cppeditsrc/Surreal/PromoteSurreal.heditsrc/Surreal/SurrealS_Type.heditsrc/Discretization/FV_TPFA/IntegrandInteriorTrace_FV_TPFA.heditsrc/LinearAlgebra/DenseLinAlg/tools/MatrixSize.heditsrc/Surreal/SurrealS_Lazy.hedittest/unit/LinearAlgebra/DenseLinAlg/MatrixSymS_Log_btest.cppeditsrc/LinearAlgebra/DenseLinAlg/tools/norm2.heditsrc/Meshing/AnalyticMetrics/XField.cppedittest/unit/Meshing/AnalyticMetrics/MetricAnalytical_btest.cppeditsrc/Field/HField/GenHField_CG/GenHField_CG_impl.heditsrc/pde/NS/SolutionFunction_Euler1D.heditsrc/LinearAlgebra/SparseLinAlg/Preconditioners/ILU0.heditsrc/Meshing/EGADS/EGApproximate.heditsrc/Adaptation/MOESS/TAO/ImpliedMetric_Optimizer_TAO/ImpliedMetric_Optimizer_TAO_impl.heditsrc/pde/ArtificialViscosity/PDEmitAVSensor1D.heditsrc/pde/ArtificialViscosity/PDEmitAVSensor2D.heditsrc/Adaptation/MOESS/SolverInterface_VMSD_BR2.heditsrc/pde/Sensor/Source2D_JumpSensor.heditsrc/Adaptation/MOESS/NLOPT/ImpliedMetric_Optimizer_NLOPT/ImpliedMetric_Optimizer_NLOPT_impl.heditsrc/Discretization/DG/IntegrandInteriorTrace_DGBR2.heditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_Mul.heditsrc/Field/Element/TraceUnitNormal.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized.heditsrc/Field/tools/Surrealize.hedittest/unit/Surreal/SurrealS4_btest.cppeditsrc/Adaptation/MOESS/ProblemStatement_HDG_ErrorEstimate.heditsrc/LinearAlgebra/DenseLinAlg/tools/VectorSize.heditsrc/Adaptation/MOESS/SolverInterface_VMSD.heditsrc/Meshing/AnalyticMetrics/BoundaryLayer.cppeditsrc/Meshing/AnalyticMetrics/XField.hedittest/unit/Meshing/EGADS/EGApproximate_btest.cppeditsrc/BasisFunction/Quadrature_Cache.hedittest/unit/LinearAlgebra/DenseLinAlg/MatrixSymS_Exp_btest.cppeditsrc/pde/NDConvert/SolnNDConvertSpace1D.heditsrc/Adaptation/MOESS/SolverInterface_AGLS_LiftedBoundary.heditsrc/pde/NDConvert/SolnNDConvertSpaceTime3D.heditsrc/pde/NS/SolutionFunction_Euler2D.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_HubTrace_Galerkin.heditsrc/Meshing/AnalyticMetrics/CornerSingularity.heditsrc/Field/Element/ElementLine.heditsrc/LinearAlgebra/Transpose.heditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_Exp.heditsrc/Adaptation/MOESS/SolverInterface_DGBR2_Block2x2.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized_LiftedBoundary.heditsrc/pde/FullPotential/BCLinearizedIncompressiblePotential2D_sansLG.cppeditsrc/pde/Sensor/Source1D_JumpSensor.heditsrc/Field/Element/ElementXFieldLine.heditsrc/Meshing/EGADS/Airfoils/NACA4.heditsrc/Surreal/SurrealS_Reverse.hsrc/Surreal/SurrealS_fwd.hb3ae1c5b7267477d135b1bb5cc6c48cfcdf9d3e81594572464000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduForgot a file 2020-07-12 12:47:44 -0400b3ae1c5b7267477d135b1bb5cc6c48cfcdf9d3e8Forgot a fileaddsrc/Surreal/SurrealS_fwd.hsrc/MPI/serialize_SurrealS.hff4afd83773f438ad09a9a47b3ae2813d3d62b941594574207000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMissed MPI SurrealS 2020-07-12 13:16:47 -0400ff4afd83773f438ad09a9a47b3ae2813d3d62b94Missed MPI SurrealSeditsrc/MPI/serialize_SurrealS.hsrc/Meshing/refine/XField_refine.cpp66507dac58f03c9f407240cf6d7d45bcb7d03c8b1594577741000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdd missing include 2020-07-12 14:15:41 -040066507dac58f03c9f407240cf6d7d45bcb7d03c8bAdd missing includeeditsrc/Meshing/refine/XField_refine.cpptest/unit/Surreal/SurrealS1_btest.cpptest/unit/Surreal/SurrealS4_btest.cppsrc/Surreal/SurrealS_Lazy.h5321a5e0cd29568104b0133e10a51b8be62b255a1594581074000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduRemove SurrealS(Real,Real) constructor 2020-07-12 15:11:14 -04005321a5e0cd29568104b0133e10a51b8be62b255aRemove SurrealS(Real,Real) constructoredittest/unit/Surreal/SurrealS1_btest.cppeditsrc/Surreal/SurrealS_Lazy.hedittest/unit/Surreal/SurrealS4_btest.cpptest/unit/LinearAlgebra/DenseLinAlg/VectorS_SurrealS_deriv_btest.cpptest/unit/pde/Sensor/Source2D_JumpSensor_btest.cppsrc/Surreal/SurrealS_Lazy.htest/unit/pde/Sensor/Source1D_JumpSensor_btest.cpp81208998a7717442b5234dbe6b62bf98f98a2e291594610731000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMore fixes for modified Surreal 2020-07-12 23:25:31 -040081208998a7717442b5234dbe6b62bf98f98a2e29More fixes for modified Surrealedittest/unit/pde/Sensor/Source1D_JumpSensor_btest.cppedittest/unit/LinearAlgebra/DenseLinAlg/VectorS_SurrealS_deriv_btest.cppeditsrc/Surreal/SurrealS_Lazy.hedittest/unit/pde/Sensor/Source2D_JumpSensor_btest.cppsrc/Meshing/EGADS/EGApproximate.cpp18840315730096553fcc19301cfbc7ee7dbe23861594650492000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix warnings 2020-07-13 10:28:12 -040018840315730096553fcc19301cfbc7ee7dbe2386Fix warningseditsrc/Meshing/EGADS/EGApproximate.cpptest/sandbox/Solve2D_VMSD_Triangle_RANSSA_Joukowski_toy.cpptest/sandbox/Solve2D_VMSDBR2_Triangle_RANSSA_Joukowski_toy.cpptest/sandbox/Solve2D_VMSDBR2_HOW5_VI2_toy.cpptest/sandbox/Solve2D_VMSD_Triangle_RANSSA_Joukowski_UROP_toy.cppa0abef40bd57789c63811840db72b22bc3ac29b81594758509000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduSetup to run VMSDBR2 on fixed Joukowski meshes 2020-07-14 16:28:29 -0400a0abef40bd57789c63811840db72b22bc3ac29b8Setup to run VMSDBR2 on fixed Joukowski meshesedittest/sandbox/Solve2D_VMSDBR2_HOW5_VI2_toy.cppdeletetest/sandbox/Solve2D_VMSD_Triangle_RANSSA_Joukowski_UROP_toy.cppdeletetest/sandbox/Solve2D_VMSD_Triangle_RANSSA_Joukowski_toy.cppaddtest/sandbox/Solve2D_VMSDBR2_Triangle_RANSSA_Joukowski_toy.cppsrc/Discretization/VMSDBR2/IntegrandCell_VMSD_BR2.hfb36b62003f58d57084dc21aca35e265f690569c1594761229000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix uninitialized variable warnings 2020-07-14 17:13:49 -0400fb36b62003f58d57084dc21aca35e265f690569cFix uninitialized variable warningseditsrc/Discretization/VMSDBR2/IntegrandCell_VMSD_BR2.htest/sandbox/Solve2D_VMSDBR2_Triangle_RANSSA_Joukowski_toy.cppd8f0f915ce7fceae9e5a4fe67152568f85f8345d1594786569000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix vera warning 2020-07-15 00:16:09 -0400d8f0f915ce7fceae9e5a4fe67152568f85f8345dFix vera warningedittest/sandbox/Solve2D_VMSDBR2_Triangle_RANSSA_Joukowski_toy.cppsrc/NonLinearSolver/NewtonSolver_impl.htest/sandbox/Solve2D_VMSDBR2_HOW5_VI2_HTC_toy.cppsrc/NonLinearSolver/NonLinearSolverBase.hd1fb3a27ab6ceb998e09c12d848ee65ad1cacd161594789991000https://acdl.mit.edu/csi/user/blscblscblsc@mit.edusrc/LinearAlgebra/ 2020-07-15 01:13:11 -0400d1fb3a27ab6ceb998e09c12d848ee65ad1cacd16src/LinearAlgebra/edittest/sandbox/Solve2D_VMSDBR2_HOW5_VI2_HTC_toy.cppeditsrc/NonLinearSolver/NewtonSolver_impl.heditsrc/NonLinearSolver/NonLinearSolverBase.hsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_backsolve.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_CRS_double.cppsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixD_MatrixS_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_4x4_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixD.cppsrc/Discretization/GloballyConstrained/AlgebraicEquationSet_GloballyConstrained.hsrc/LinearAlgebra/SparseLinAlg/Krylov/FGMRES_impl.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_backsolve.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_3x3_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/PETSc/PETSc_VectorSize_impl.hsrc/LinearAlgebra/SparseLinAlg/LinearSolverBase.hsrc/LinearAlgebra/SparseLinAlg/Preconditioners/ILU0_impl.hsrc/LinearAlgebra/SparseLinAlg/Preconditioners/Identity.hsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_backsolve.hsrc/LinearAlgebra/SparseLinAlg/Preconditioners/LU_SGS_impl.hsrc/SolutionTrek/Continuation/Homotopy/AlgebraicEquationSet_HTC2.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_CRS_double.cppsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_MatrixBlock_2x2_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_CRS_MatrixD.cppsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_CRS_MatrixD.cppsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixS_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_CRS_MatrixD_MatrixS_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/Krylov/FGMRES_MatrixBlock_2x2_Instantiate.cppsrc/SolutionTrek/Continuation/Homotopy/Homotopy.h4d48fcc96208ff93b560c3183575d275a40c82091594790144000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduFirst pass at prototyping a globally constrained algebraic equation set 2020-07-15 01:15:44 -04004d48fcc96208ff93b560c3183575d275a40c8209First pass at prototyping a globally constrained algebraic equation seteditsrc/LinearAlgebra/SparseLinAlg/Krylov/FGMRES_MatrixBlock_2x2_Instantiate.cppeditsrc/LinearAlgebra/SparseLinAlg/LinearSolverBase.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_CRS_MatrixD_MatrixS_Instantiate.cppeditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixS_Instantiate.cppeditsrc/LinearAlgebra/SparseLinAlg/Preconditioners/ILU0_impl.heditsrc/LinearAlgebra/SparseLinAlg/Preconditioners/LU_SGS_impl.heditsrc/LinearAlgebra/SparseLinAlg/Preconditioners/Identity.heditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_backsolve.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETSc_VectorSize_impl.heditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_CRS_double.cppaddsrc/Discretization/GloballyConstrained/AlgebraicEquationSet_GloballyConstrained.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_CRS_double.cppeditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_Instantiate.cppeditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_CRS_MatrixD.cppeditsrc/SolutionTrek/Continuation/Homotopy/AlgebraicEquationSet_HTC2.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_4x4_Instantiate.cppeditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_backsolve.heditsrc/SolutionTrek/Continuation/Homotopy/Homotopy.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_backsolve.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_3x3_Instantiate.cppeditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixD_MatrixS_Instantiate.cppeditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_CRS_MatrixD.cppeditsrc/LinearAlgebra/SparseLinAlg/Krylov/FGMRES_impl.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixD.cppeditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_MatrixBlock_2x2_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/tools/dot.hsrc/LinearAlgebra/SparseLinAlg/ScalarVector.hsrc/NonLinearSolver/NewtonSolver_MatrixBlock_2x2_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/ScalarMatrix_CRS.htest/sandbox/Solve2D_VMSDBR2_HOW5_VI2_AV_HTC_toy.cppsrc/Discretization/GloballyConstrained/AlgebraicEquationSet_GloballyConstrained.hsrc/LinearAlgebra/SparseLinAlg/ScalarMatrix_CRS_impl.h53835d57dbbacaf3ac1082abb22c455c1590f4211594924337000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduUpdates to globally constrained equations to include condensation of matrix in PETSc 2020-07-16 14:32:17 -040053835d57dbbacaf3ac1082abb22c455c1590f421Updates to globally constrained equations to include condensation of matrix in PETScaddtest/sandbox/Solve2D_VMSDBR2_HOW5_VI2_AV_HTC_toy.cppeditsrc/Discretization/GloballyConstrained/AlgebraicEquationSet_GloballyConstrained.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_Instantiate.cppeditsrc/NonLinearSolver/NewtonSolver_MatrixBlock_2x2_Instantiate.cppeditsrc/LinearAlgebra/SparseLinAlg/ScalarVector.heditsrc/LinearAlgebra/SparseLinAlg/ScalarMatrix_CRS_impl.heditsrc/LinearAlgebra/SparseLinAlg/tools/dot.heditsrc/LinearAlgebra/SparseLinAlg/ScalarMatrix_CRS.hsrc/SolutionTrek/Continuation/Homotopy/Homotopy.hsrc/SolutionTrek/Continuation/Homotopy/AlgebraicEquationSet_HTC2.h98f55e5e970fc4ee50ae9c6a90ebc427ccb2d4241594926268000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduUpdates for first round of parallelizing the homotopy 2020-07-16 15:04:28 -040098f55e5e970fc4ee50ae9c6a90ebc427ccb2d424Updates for first round of parallelizing the homotopyeditsrc/SolutionTrek/Continuation/Homotopy/Homotopy.heditsrc/SolutionTrek/Continuation/Homotopy/AlgebraicEquationSet_HTC2.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_Instantiate.cppscripts/vera/exclusions.txttest/sandbox/Solve2D_VMSDBR2_HOW5_VI2_AV_HTC_toy.cppsrc/SolutionTrek/Continuation/Homotopy/Homotopy.hsrc/Discretization/GloballyConstrained/AlgebraicEquationSet_GloballyConstrained.htest/sandbox/Solve2D_VMSDBR2_HOW5_VI2_toy.cppsrc/SolutionTrek/Continuation/Homotopy/AlgebraicEquationSet_HTC2.hsrc/Discretization/VMSDBR2/JacobianCell_VMSD_BR2.h9a5c942b1d3ce431aed247cb52ac0039ec626f6c1594996703000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduParallel homotopy appears to be working 2020-07-17 10:38:23 -04009a5c942b1d3ce431aed247cb52ac0039ec626f6cParallel homotopy appears to be workingedittest/sandbox/Solve2D_VMSDBR2_HOW5_VI2_AV_HTC_toy.cppeditsrc/Discretization/GloballyConstrained/AlgebraicEquationSet_GloballyConstrained.heditsrc/SolutionTrek/Continuation/Homotopy/Homotopy.heditsrc/SolutionTrek/Continuation/Homotopy/AlgebraicEquationSet_HTC2.heditsrc/Discretization/VMSDBR2/JacobianCell_VMSD_BR2.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_Instantiate.cppeditscripts/vera/exclusions.txtedittest/sandbox/Solve2D_VMSDBR2_HOW5_VI2_toy.cpptest/unit/Meshing/EGADS/EGApproximate_btest.cppsrc/Meshing/EGADS/EGApproximate.hsrc/Meshing/EGADS/EGCurve.hsrc/Meshing/EGADS/EGCircle.cpptest/sandbox/Solve3D_CG_NACA_LIP_Darmofal_toy.cppsrc/Meshing/EGADS/CMakeLists.txtsrc/Meshing/EGADS/Airfoils/CubicCamber.cppsrc/Meshing/EGADS/transform.cpptest/unit/Meshing/avro/XField_avro_btest.cppsrc/Meshing/EGADS/Airfoils/NACA4.cppsrc/Meshing/EGADS/EGApproximate.cppsrc/Meshing/EGADS/EGFace.cppsrc/Meshing/EGADS/EGBezierCurve.cppsrc/Meshing/EGADS/Airfoils/MeanlineBlade.cpptest/sandbox/Solve3D_CG_NACA_LIP_toy.cppsrc/Meshing/EGADS/EGCurve.cppsrc/Meshing/EGADS/transform.htest/unit/Meshing/EGADS/transform_btest.cppsrc/Meshing/EGTess/makeWakedAirfoil.cppsrc/Meshing/EGADS/EGModel.cppsrc/Meshing/EGADS/EGCircle.hsrc/Meshing/EGADS/EGObject.hsrc/Meshing/EGADS/EGLine.htest/unit/Meshing/EGADS/EGEdge_btest.cpptest/sandbox/Solve3D_CG_NACA_LIP_Drela_toy.cppsrc/SolutionTrek/Continuation/PseudoTime/PseudoTime.htest/unit/Meshing/TetGen/makeWakedAirfoil_btest.cpptest/unit/Meshing/EGADS/EGBody_btest.cppsrc/Meshing/EGADS/tools.htest/sandbox/Solve3D_CG_LIP_KuttaHACK_toy.cppsrc/Meshing/EGADS/EGApproximateCurve.cppsrc/Meshing/EGADS/EGBody.hsrc/Meshing/EGADS/EGBezierCurve.htest/unit/Meshing/avro/XField3D_Wake_avro_btest.cppsrc/Meshing/EGADS/EGLine.cpptest/unit/Meshing/EGADS/EGLine_btest.cpptest/unit/Meshing/refine/refine2D_btest.cppsrc/Meshing/EGADS/EGFace.hsrc/Meshing/EGADS/Airfoils/NACA4.htest/unit/Meshing/EGADS/CubicCamber_btest.cpptest/sandbox/Solve3D_CG_NACA_FP_Drela_toy.cpptest/unit/Meshing/EGADS/sewFaces_btest.cppsrc/Meshing/EGADS/EGNode.hsrc/Meshing/EGADS/Airfoils/MeanlineBlade.hsrc/Meshing/EGADS/EGEdge.cppsrc/Meshing/EGADS/EGApproximateCurve.htest/unit/Meshing/EGADS/EGNode_btest.cpptest/sandbox/Solve3D_CG_NACA_LIP2_toy.cppsrc/Meshing/EGADS/EGNode.cppsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppCMakeInclude/Checks/CheckEGADS.cmakesrc/Meshing/EGADS/Airfoils/CubicCamber.hsrc/Meshing/EGADS/blend.hsrc/Meshing/EGADS/EGEdge.hsrc/Meshing/EGADS/EGObject.cppsrc/Meshing/EGADS/blend.cpptest/unit/Meshing/EGADS/EGModel_btest.cppsrc/Meshing/EGADS/EGPlane.cpptest/unit/Meshing/EGADS/EGFace_btest.cppsrc/Meshing/EGADS/EGBody.cpptest/unit/Meshing/EGADS/MeanlineBlade_btest.cppsrc/Meshing/EGTess/makeWakedAirfoil.hsrc/Field/ElementCounter.htest/unit/Meshing/EGADS/EGLoop_btest.cpp86d70b821a809c7bac6dc0ffd2a5514c39e29bc91594999423000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduEGADS interface refactoring. Added meanline blade. 2020-07-17 11:23:43 -040086d70b821a809c7bac6dc0ffd2a5514c39e29bc9EGADS interface refactoring. Added meanline blade.editsrc/Meshing/EGTess/makeWakedAirfoil.cppedittest/unit/Meshing/EGADS/EGEdge_btest.cppaddsrc/Meshing/EGADS/EGCurve.cppedittest/unit/Meshing/EGADS/EGModel_btest.cppeditsrc/Meshing/EGADS/EGNode.heditCMakeInclude/Checks/CheckEGADS.cmakeedittest/unit/Meshing/avro/XField_avro_btest.cppaddtest/unit/Meshing/EGADS/CubicCamber_btest.cppeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppedittest/unit/Meshing/EGADS/EGFace_btest.cppaddtest/unit/Meshing/EGADS/transform_btest.cppedittest/sandbox/Solve3D_CG_LIP_KuttaHACK_toy.cppaddsrc/Meshing/EGADS/Airfoils/CubicCamber.cppeditsrc/Meshing/EGTess/makeWakedAirfoil.haddsrc/Meshing/EGADS/blend.hedittest/unit/Meshing/avro/XField3D_Wake_avro_btest.cppdeletesrc/Meshing/EGADS/EGApproximate.hedittest/unit/Meshing/EGADS/EGApproximate_btest.cppeditsrc/Meshing/EGADS/EGPlane.cppaddsrc/Meshing/EGADS/EGBezierCurve.cppaddsrc/Meshing/EGADS/EGApproximateCurve.hedittest/unit/Meshing/EGADS/EGBody_btest.cppeditsrc/Meshing/EGADS/EGFace.heditsrc/Meshing/EGADS/EGLine.hedittest/sandbox/Solve3D_CG_NACA_LIP_Drela_toy.cppedittest/unit/Meshing/refine/refine2D_btest.cppeditsrc/Meshing/EGADS/EGBody.cppedittest/unit/Meshing/EGADS/EGLoop_btest.cppdeletesrc/Meshing/EGADS/EGApproximate.cppaddsrc/Meshing/EGADS/EGApproximateCurve.cppedittest/unit/Meshing/TetGen/makeWakedAirfoil_btest.cppeditsrc/Field/ElementCounter.heditsrc/Meshing/EGADS/EGBody.heditsrc/Meshing/EGADS/EGNode.cppeditsrc/Meshing/EGADS/Airfoils/NACA4.cppeditsrc/Meshing/EGADS/EGCircle.hedittest/sandbox/Solve3D_CG_NACA_LIP2_toy.cppeditsrc/Meshing/EGADS/EGObject.heditsrc/Meshing/EGADS/EGCircle.cppeditsrc/Meshing/EGADS/EGModel.cppeditsrc/SolutionTrek/Continuation/PseudoTime/PseudoTime.heditsrc/Meshing/EGADS/CMakeLists.txteditsrc/Meshing/EGADS/EGEdge.cppeditsrc/Meshing/EGADS/EGLine.cppedittest/sandbox/Solve3D_CG_NACA_LIP_Darmofal_toy.cppeditsrc/Meshing/EGADS/tools.haddsrc/Meshing/EGADS/Airfoils/MeanlineBlade.hedittest/sandbox/Solve3D_CG_NACA_FP_Drela_toy.cppedittest/sandbox/Solve3D_CG_NACA_LIP_toy.cppedittest/unit/Meshing/EGADS/EGLine_btest.cppaddsrc/Meshing/EGADS/EGCurve.haddsrc/Meshing/EGADS/EGBezierCurve.haddsrc/Meshing/EGADS/blend.cppaddtest/unit/Meshing/EGADS/MeanlineBlade_btest.cppaddsrc/Meshing/EGADS/Airfoils/CubicCamber.haddsrc/Meshing/EGADS/Airfoils/MeanlineBlade.cppeditsrc/Meshing/EGADS/EGFace.cppeditsrc/Meshing/EGADS/EGObject.cppedittest/unit/Meshing/EGADS/sewFaces_btest.cppaddsrc/Meshing/EGADS/transform.haddsrc/Meshing/EGADS/transform.cppeditsrc/Meshing/EGADS/EGEdge.heditsrc/Meshing/EGADS/Airfoils/NACA4.hedittest/unit/Meshing/EGADS/EGNode_btest.cpptest/unit/Meshing/EGTess/EGTessEdge_btest.cppsrc/Meshing/EGTess/EGVertexFace.cppsrc/Meshing/EGTess/EGTessModel_aflr4.cppsrc/Meshing/EGADS/EGNode.hsrc/Meshing/EGTess/EGTessEdge.cppsrc/Meshing/EGTess/EGTriangle.cppsrc/Meshing/TetGen/EGTetGen.cppsrc/Meshing/EGTess/EGTessEdge.htest/unit/Meshing/EGTess/EGTessellation_btest.cppsrc/Meshing/EGTess/EGTessModel.cpptest/unit/Meshing/EGADS/EGNode_btest.cpptest/unit/Meshing/EGTess/EGTessModel_btest.cppsrc/Meshing/EGADS/EGNode.cppsrc/Meshing/EGTess/makeWakedAirfoil.cppef9f987f96a66d16c8c9d37aed2599fc338f3dac1595001798000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixes for EGTess 2020-07-17 12:03:18 -0400ef9f987f96a66d16c8c9d37aed2599fc338f3dacFixes for EGTesseditsrc/Meshing/EGTess/EGTessModel_aflr4.cppedittest/unit/Meshing/EGTess/EGTessModel_btest.cppeditsrc/Meshing/EGADS/EGNode.heditsrc/Meshing/EGADS/EGNode.cppeditsrc/Meshing/EGTess/EGVertexFace.cppedittest/unit/Meshing/EGTess/EGTessEdge_btest.cppeditsrc/Meshing/EGTess/EGTessEdge.cppeditsrc/Meshing/EGTess/EGTriangle.cppeditsrc/Meshing/TetGen/EGTetGen.cppedittest/unit/Meshing/EGTess/EGTessellation_btest.cppedittest/unit/Meshing/EGADS/EGNode_btest.cppeditsrc/Meshing/EGTess/EGTessEdge.heditsrc/Meshing/EGTess/EGTessModel.cppeditsrc/Meshing/EGTess/makeWakedAirfoil.cppsrc/Meshing/EGADS/EGFace.hsrc/Meshing/AFLR/AFLR3.cppsrc/Field/XField3D_Wake.hsrc/Meshing/EGADS/rotate.hsrc/Meshing/AnalyticMetrics/CornerSingularity.cppsrc/Meshing/EGADS/EGEdge.htest/unit/pde/FullPotential/LinearizedIncompressiblePotential3D_Trefftz_btest.cppsrc/Meshing/avro/XField3D_Wake_avro.cppsrc/Meshing/EGADS/EGNode.hsrc/Meshing/EGADS/Airfoils/MeanlineBlade.htest/unit/Meshing/TetGen/EGTetGen_btest.cpptest/unit/pde/FullPotential/LinearizedIncompressiblePotential3D_Circulation_btest.cpptest/unit/Meshing/TetGen/makeTetGenModel_btest.cppsrc/Meshing/EGADS/Airfoils/MeanlineBlade.cpptest/unit/Meshing/avro/XField3D_Wake_avro_btest.cpptest/unit/Meshing/AFLR/AFLR3_btest.cppsrc/Meshing/AnalyticMetrics/XField.cppsrc/Meshing/AnalyticMetrics/BoundaryLayer.cpptest/unit/Meshing/AnalyticMetrics/MetricAnalytical_btest.cppsrc/Meshing/EGTess/makeWakedAirfoil.cppsrc/Meshing/EGADS/revolve.htest/unit/Meshing/EGTess/EGTessModel_btest.cpp910b98f988475d7e55206fa3051ece01d450b4d51595009097000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMore fixes to the EGADS cleanup 2020-07-17 14:04:57 -0400910b98f988475d7e55206fa3051ece01d450b4d5More fixes to the EGADS cleanupeditsrc/Meshing/avro/XField3D_Wake_avro.cppeditsrc/Meshing/AnalyticMetrics/BoundaryLayer.cppeditsrc/Meshing/AnalyticMetrics/XField.cppeditsrc/Meshing/EGADS/Airfoils/MeanlineBlade.cppeditsrc/Meshing/EGADS/Airfoils/MeanlineBlade.heditsrc/Meshing/EGTess/makeWakedAirfoil.cppedittest/unit/pde/FullPotential/LinearizedIncompressiblePotential3D_Trefftz_btest.cppaddsrc/Meshing/EGADS/revolve.hedittest/unit/Meshing/avro/XField3D_Wake_avro_btest.cppeditsrc/Meshing/AnalyticMetrics/CornerSingularity.cppedittest/unit/Meshing/TetGen/makeTetGenModel_btest.cppedittest/unit/Meshing/AnalyticMetrics/MetricAnalytical_btest.cppedittest/unit/Meshing/TetGen/EGTetGen_btest.cppdeletesrc/Meshing/EGADS/rotate.heditsrc/Field/XField3D_Wake.heditsrc/Meshing/EGADS/EGFace.hedittest/unit/Meshing/AFLR/AFLR3_btest.cppeditsrc/Meshing/EGADS/EGNode.hedittest/unit/Meshing/EGTess/EGTessModel_btest.cppeditsrc/Meshing/EGADS/EGEdge.heditsrc/Meshing/AFLR/AFLR3.cppedittest/unit/pde/FullPotential/LinearizedIncompressiblePotential3D_Circulation_btest.cpptest/unit/Meshing/TetGen/EGTetGen_btest.cppsrc/Meshing/EGADS/EGEdge.cppsrc/Meshing/EGADS/Airfoils/MeanlineBlade.cpptest/unit/Meshing/EGADS/MeanlineBlade_btest.cpptest/unit/Meshing/AFLR/AFLR3_btest.cppsrc/Meshing/EGADS/transform.hsrc/Meshing/EGADS/transform.cpptest/unit/Meshing/EGADS/transform_btest.cppbc318d918574da3f8e6775fb5ccacaabbca361c81595022023000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMore EGADS fixes 2020-07-17 17:40:23 -0400bc318d918574da3f8e6775fb5ccacaabbca361c8More EGADS fixeseditsrc/Meshing/EGADS/EGEdge.cppedittest/unit/Meshing/EGADS/transform_btest.cppedittest/unit/Meshing/TetGen/EGTetGen_btest.cppedittest/unit/Meshing/AFLR/AFLR3_btest.cppeditsrc/Meshing/EGADS/Airfoils/MeanlineBlade.cppeditsrc/Meshing/EGADS/transform.hedittest/unit/Meshing/EGADS/MeanlineBlade_btest.cppeditsrc/Meshing/EGADS/transform.cppsrc/UserInterfaces/capsAIM/sansLIPAIM.cppa28688c602da2b26e3a5d155afc15f194822a3231595028188000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix compile error 2020-07-17 19:23:08 -0400a28688c602da2b26e3a5d155afc15f194822a323Fix compile erroreditsrc/UserInterfaces/capsAIM/sansLIPAIM.cppsrc/Meshing/EGADS/EGBezierCurve.cpp33be89628773ef5d354ade27ab09c0a245a1bac51595039361000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix warning 2020-07-17 22:29:21 -040033be89628773ef5d354ade27ab09c0a245a1bac5Fix warningeditsrc/Meshing/EGADS/EGBezierCurve.cpptest/unit/Meshing/EGADS/MeanlineBlade_btest.cppd09a1613e032b370c8669fc3915fc5b7f43ca64d1595081498000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix more warnings 2020-07-18 10:11:38 -0400d09a1613e032b370c8669fc3915fc5b7f43ca64dFix more warningsedittest/unit/Meshing/EGADS/MeanlineBlade_btest.cppsrc/pde/NS/BCEulermitAVSensor3D.hsrc/pde/NS/BCEuler3D.cppsrc/pde/ArtificialViscosity/AVSensor_AdvectiveFlux3D.hsrc/pde/ArtificialViscosity/AVSensor_Source3D.hsrc/pde/ArtificialViscosity/PDEmitAVSensor3D.hsrc/pde/NS/PDEEulermitAVDiffusion2D.hsrc/pde/NS/PDEEulermitAVDiffusion3D.hsrc/Discretization/GloballyConstrained/AlgebraicEquationSet_GloballyConstrained.hsrc/pde/NS/BCEuler3D_mitState.hsrc/NonLinearSolver/NewtonSolver_MatrixBlock_2x2_Instantiate.cppsrc/pde/SourceOnly/PDESourceOnly3D.hsrc/LinearAlgebra/SparseLinAlg/ScalarMatrix_CRS_int.cppsrc/pde/NS/OutputNavierStokes3D.hsrc/SolutionTrek/Continuation/Homotopy/Homotopy.hsrc/NonLinearSolver/LineUpdate/HalvingSearchLineUpdate_MatrixBlock_2x2_Instantiate.cppsrc/pde/NS/PDEEuler3D.hsrc/SolutionTrek/Continuation/Homotopy/AlgebraicEquationSet_HTC2.h3a6dec47f7117fa8997e9bf1654ddd5077dfc7d21595281163000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduA few tweeks on the homotopy and 3D set up 2020-07-20 17:39:23 -04003a6dec47f7117fa8997e9bf1654ddd5077dfc7d2A few tweeks on the homotopy and 3D set upeditsrc/NonLinearSolver/NewtonSolver_MatrixBlock_2x2_Instantiate.cppeditsrc/NonLinearSolver/LineUpdate/HalvingSearchLineUpdate_MatrixBlock_2x2_Instantiate.cppeditsrc/pde/NS/PDEEulermitAVDiffusion2D.heditsrc/pde/NS/BCEulermitAVSensor3D.heditsrc/pde/ArtificialViscosity/AVSensor_AdvectiveFlux3D.heditsrc/pde/NS/PDEEulermitAVDiffusion3D.heditsrc/pde/NS/BCEuler3D.cppeditsrc/pde/ArtificialViscosity/PDEmitAVSensor3D.heditsrc/SolutionTrek/Continuation/Homotopy/AlgebraicEquationSet_HTC2.heditsrc/pde/NS/PDEEuler3D.heditsrc/pde/NS/BCEuler3D_mitState.heditsrc/Discretization/GloballyConstrained/AlgebraicEquationSet_GloballyConstrained.haddsrc/pde/NS/OutputNavierStokes3D.haddsrc/pde/SourceOnly/PDESourceOnly3D.heditsrc/LinearAlgebra/SparseLinAlg/ScalarMatrix_CRS_int.cppeditsrc/SolutionTrek/Continuation/Homotopy/Homotopy.heditsrc/pde/ArtificialViscosity/AVSensor_Source3D.hsrc/Discretization/GloballyConstrained/AlgebraicEquationSet_GloballyConstrained.hsrc/SolutionTrek/Continuation/Homotopy/AlgebraicEquationSet_HTC2.he4089a87cbbb897899c07298796b7a0bf1fde6061595284805000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduUpdated interface for globally constrained equations so the jacobian for the pde and the constraints are in seperate functions 2020-07-20 18:40:05 -0400e4089a87cbbb897899c07298796b7a0bf1fde606Updated interface for globally constrained equations so the jacobian for the pde and the constraints are in seperate functionseditsrc/SolutionTrek/Continuation/Homotopy/AlgebraicEquationSet_HTC2.heditsrc/Discretization/GloballyConstrained/AlgebraicEquationSet_GloballyConstrained.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_Instantiate.cppc8d29c0f6b527cf0188a1adfe61278daf991c4001595288069000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduThe small problem for static condensation is calculated on one processor then broadcast, that way there are on finite precision inconsistencies 2020-07-20 19:34:29 -0400c8d29c0f6b527cf0188a1adfe61278daf991c400The small problem for static condensation is calculated on one processor then broadcast, that way there are on finite precision inconsistencieseditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_Instantiate.cppsrc/Discretization/Block/AlgebraicEquationSet_Block2x2_VecS3_Real.cppsrc/pde/ArtificialViscosity/PDEmitAVSensor3D.hsrc/LinearAlgebra/SparseLinAlg/Preconditioners/LU_SGS.htest/system/CodeConsistency/PDEEulermitAVDiffusion3D_RANSSA_Consistency_btest.cpptest/unit/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_Decompose_LUP_btest.cpptest/system/CodeConsistency/PDEmitAVSensor3D_Consistency_RANSSA_btest.cppsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_Decompose_LU.cppsrc/pde/NS/BCNavierStokes3D_mitState.htest/sandbox/Solve3D_DGBR2_RANSSA_CRM_toy.cppsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_Transpose.htest/unit/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_DenseMatrix_btest.cppsrc/LinearAlgebra/MatrixSizeType.hsrc/LinearAlgebra/MatrixViewType.hsrc/pde/NS/PDEEuler3D.hsrc/LinearAlgebra/SparseLinAlg/ScalarMatrix_CRS_impl.hsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2.htest/unit/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_InverseLUP_btest.cpptest/sandbox/Solve3D_VMSDBR2_BlottnerSphere_AV_HTC_toy.cpptest/system/CodeConsistency/PDEEulermitAVDiffusion3D_Consistency_btest.cppsrc/SolutionTrek/Continuation/ImplicitResidualSmoothing/AlgebraicEquationSet_Block2x2_IRS.htest/unit/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_Decompose_LU_btest.cpptest/unit/pde/ArtificialViscosity/AVSensor_Source3D_Euler_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block2x2_DGBR2_Line_Euler1DSensor_btest.cppsrc/pde/NS/BCEulermitAVSensor2D.htest/sandbox/Solve3D_CGStabilized_Euler_Bump_ArtificialViscosity_toy.cpptest/sandbox/Solve1D_DGBR2_Burgers_ArtificialViscosity_toy.cppsrc/LinearAlgebra/Transpose.hsrc/Discretization/Block/AlgebraicEquationSet_Block2x2.hsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_MatrixBlock_2x2_Instantiate.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block2x2_Triangle_AD_btest.cppsrc/NonLinearSolver/NewtonSolver_MatrixBlock_2x2_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/ScalarMatrix_CRS.hsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_InverseLUP.hsrc/LinearAlgebra/SparseLinAlg/Krylov/FGMRES_MatrixBlock_2x2_Instantiate.cppsrc/LinearAlgebra/NonZeroPatternType.hsrc/NonLinearSolver/LineUpdate/HalvingSearchLineUpdate_MatrixBlock_2x2_Instantiate.cpptest/sandbox/Adapt3D_DGBR2_RANSSA_ArtificialViscosity_ONERA_M6_toy.cppsrc/LinearAlgebra/DenseLinAlg/InverseLUP.hsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_InverseLU.cpptest/unit/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_Transpose_btest.cppsrc/pde/NS/BCEulermitAVSensor3D.hsrc/LinearAlgebra/SparseLinAlg/Preconditioners/LU_SGS_MatrixBlock_2x2_Instantiate.cppsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_Decompose_LUP.hsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_InverseLU.htest/unit/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_SparseMatrix_CRS_btest.cpptest/system/BlockSolve/Block_1D_Decoupled_AD_btest.cpptest/unit/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_InverseLU_btest.cppsrc/LinearAlgebra/SparseLinAlg/WriteMatrixMarketFile.hsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_Decompose_LUP.cpptest/system/CodeConsistency/PDEmitAVSensor3D_Consistency_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block2x2_DGBR2_Triangle_BuckleyLeverett_AV_btest.cppsrc/Discretization/GloballyConstrained/AlgebraicEquationSet_GloballyConstrained.htest/unit/pde/NS/PDEEulermitAVDiffusion3D_btest.cpptest/sandbox/Solve1D_DGBR2_BuckleyLeverett_ArtificialViscosity_ST_toy.cpptest/system/BlockSolve/Block_1D_Decoupled_Burgers_btest.cppsrc/LinearAlgebra/VectorType.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_NoShur_Instantiate.cppsrc/LinearAlgebra/BlockLinAlg/BlockLinAlg_Type.hsrc/Discretization/Block/AlgebraicEquationSet_Block2x2_impl.htest/sandbox/Adapt3D_CGStabilized_RANSSA_ArtificialViscosity_ONERA_M6_toy.cppsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_Instantiate.cppsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_Inverse.htest/system/CodeConsistency/BCEulermitAVSensor3D_Consistency_btest.cpptest/sandbox/Adapt3D_DGBR2_RANSSA_CRM_toy.cppsrc/LinearAlgebra/TransposeTraits.htest/unit/LinearAlgebra/SparseLinAlg/UMFPACK_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block2x2_DGBR2_BuckleyLeverett_ArtificialViscosity_ST_btest.cpptest/sandbox/Solve3D_CGStabilized_RANSSA_OneraM6_ArtificialViscosity_toy.cppsrc/LinearAlgebra/SparseLinAlg/CMakeLists.txtsrc/pde/ArtificialViscosity/PDEmitAVSensor2D.hsrc/Discretization/Block/AlgebraicEquationSet_Block2x2_VecS4_Real.cppsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_Shur_Instantiate.cppsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_InverseLUP.cppsrc/LinearAlgebra/DenseLinAlg/InverseLU.hsrc/Discretization/Block/AlgebraicEquationSet_Block2x2_Real_Real.cpptest/unit/LinearAlgebra/Heat1D_btest.htest/unit/pde/NS/PDEEuler3D_btest.cppsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_Decompose_LU.hsrc/SolutionTrek/Continuation/PseudoTime/AlgebraicEquationSet_Block2x2_PTC.hsrc/LinearAlgebra/SparseLinAlg/ScalarMatrix_CRS_int.cpptest/system/CodeConsistency/BCEulermitAVSensor3D_Consistency_RANSSA_btest.cppsrc/Adaptation/MOESS/SolverInterface_DGBR2_Block2x2.htest/sandbox/Solve3D_CGStabilized_RANSSA_OneraM6_Subsonic_ArtificialViscosity_toy.cpptest/unit/pde/ArtificialViscosity/AVSensor_ViscousFlux3D_btest.cpptest/unit/pde/ArtificialViscosity/PDEmitAVSensor3D_btest.cpp6de9956926eba193bab6f211527b0190ffb19e351595361849000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduAdded template parameter to determine if (PETSc) should do a shur complement from block 2x2. Note, if we're not using PETSc, then the block matrix is solved as is. This is because the shur complement is only a work around for parallel communication issues. 2020-07-21 16:04:09 -04006de9956926eba193bab6f211527b0190ffb19e35Added template parameter to determine if (PETSc) should do a shur complement from block 2x2. Note, if we're not using PETSc, then the block matrix is solved as is. This is because the shur complement is only a work around for parallel communication issues.editsrc/LinearAlgebra/SparseLinAlg/Krylov/FGMRES_MatrixBlock_2x2_Instantiate.cppeditsrc/pde/NS/BCNavierStokes3D_mitState.hdeletesrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_Instantiate.cppeditsrc/LinearAlgebra/DenseLinAlg/InverseLU.hedittest/sandbox/Solve3D_DGBR2_RANSSA_CRM_toy.cppedittest/system/CodeConsistency/PDEmitAVSensor3D_Consistency_RANSSA_btest.cppeditsrc/LinearAlgebra/SparseLinAlg/ScalarMatrix_CRS_impl.hedittest/system/CodeConsistency/PDEEulermitAVDiffusion3D_RANSSA_Consistency_btest.cppeditsrc/Discretization/Block/AlgebraicEquationSet_Block2x2_VecS4_Real.cppeditsrc/Discretization/Block/AlgebraicEquationSet_Block2x2_VecS3_Real.cppeditsrc/LinearAlgebra/Transpose.heditsrc/LinearAlgebra/SparseLinAlg/ScalarMatrix_CRS_int.cppedittest/sandbox/Solve3D_CGStabilized_Euler_Bump_ArtificialViscosity_toy.cppedittest/system/CodeConsistency/PDEmitAVSensor3D_Consistency_btest.cppedittest/unit/pde/ArtificialViscosity/AVSensor_ViscousFlux3D_btest.cppeditsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_InverseLU.hedittest/unit/pde/NS/PDEEulermitAVDiffusion3D_btest.cppeditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_MatrixBlock_2x2_Instantiate.cppedittest/unit/LinearAlgebra/SparseLinAlg/UMFPACK_btest.cppedittest/unit/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_DenseMatrix_btest.cppedittest/system/CodeConsistency/BCEulermitAVSensor3D_Consistency_btest.cppeditsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_InverseLU.cppedittest/unit/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_InverseLUP_btest.cppedittest/system/BlockSolve/Block_1D_Decoupled_AD_btest.cppedittest/unit/Discretization/Block/AlgebraicEquationSet_Block2x2_DGBR2_Triangle_BuckleyLeverett_AV_btest.cppedittest/system/BlockSolve/Block_1D_Decoupled_Burgers_btest.cppeditsrc/LinearAlgebra/NonZeroPatternType.heditsrc/LinearAlgebra/SparseLinAlg/Preconditioners/LU_SGS_MatrixBlock_2x2_Instantiate.cppeditsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_InverseLUP.hedittest/unit/pde/ArtificialViscosity/PDEmitAVSensor3D_btest.cppeditsrc/Discretization/Block/AlgebraicEquationSet_Block2x2_impl.heditsrc/LinearAlgebra/SparseLinAlg/ScalarMatrix_CRS.heditsrc/pde/NS/BCEulermitAVSensor2D.heditsrc/LinearAlgebra/SparseLinAlg/CMakeLists.txteditsrc/Discretization/Block/AlgebraicEquationSet_Block2x2.heditsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2.heditsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_Decompose_LU.heditsrc/LinearAlgebra/MatrixSizeType.hedittest/unit/Discretization/Block/AlgebraicEquationSet_Block2x2_DGBR2_BuckleyLeverett_ArtificialViscosity_ST_btest.cppedittest/unit/Discretization/Block/AlgebraicEquationSet_Block2x2_Triangle_AD_btest.cppeditsrc/LinearAlgebra/SparseLinAlg/Preconditioners/LU_SGS.heditsrc/LinearAlgebra/VectorType.haddtest/sandbox/Solve3D_VMSDBR2_BlottnerSphere_AV_HTC_toy.cppeditsrc/LinearAlgebra/MatrixViewType.hedittest/sandbox/Solve1D_DGBR2_Burgers_ArtificialViscosity_toy.cppedittest/unit/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_Transpose_btest.cppedittest/sandbox/Adapt3D_DGBR2_RANSSA_CRM_toy.cppedittest/unit/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_Decompose_LU_btest.cppeditsrc/pde/NS/PDEEuler3D.heditsrc/pde/ArtificialViscosity/PDEmitAVSensor2D.heditsrc/LinearAlgebra/SparseLinAlg/WriteMatrixMarketFile.hedittest/unit/LinearAlgebra/Heat1D_btest.heditsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_Decompose_LU.cppeditsrc/Adaptation/MOESS/SolverInterface_DGBR2_Block2x2.heditsrc/LinearAlgebra/BlockLinAlg/BlockLinAlg_Type.heditsrc/NonLinearSolver/NewtonSolver_MatrixBlock_2x2_Instantiate.cppeditsrc/NonLinearSolver/LineUpdate/HalvingSearchLineUpdate_MatrixBlock_2x2_Instantiate.cppedittest/system/CodeConsistency/PDEEulermitAVDiffusion3D_Consistency_btest.cppeditsrc/Discretization/Block/AlgebraicEquationSet_Block2x2_Real_Real.cppeditsrc/SolutionTrek/Continuation/ImplicitResidualSmoothing/AlgebraicEquationSet_Block2x2_IRS.hedittest/unit/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_Decompose_LUP_btest.cppedittest/sandbox/Solve3D_CGStabilized_RANSSA_OneraM6_ArtificialViscosity_toy.cppeditsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_Inverse.haddsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_Shur_Instantiate.cppeditsrc/pde/NS/BCEulermitAVSensor3D.haddsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_NoShur_Instantiate.cppeditsrc/LinearAlgebra/TransposeTraits.hedittest/sandbox/Adapt3D_CGStabilized_RANSSA_ArtificialViscosity_ONERA_M6_toy.cppeditsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_Decompose_LUP.cppedittest/system/CodeConsistency/BCEulermitAVSensor3D_Consistency_RANSSA_btest.cppedittest/sandbox/Solve3D_CGStabilized_RANSSA_OneraM6_Subsonic_ArtificialViscosity_toy.cppedittest/sandbox/Solve1D_DGBR2_BuckleyLeverett_ArtificialViscosity_ST_toy.cppedittest/unit/Discretization/Block/AlgebraicEquationSet_Block2x2_DGBR2_Line_Euler1DSensor_btest.cppeditsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_Decompose_LUP.heditsrc/Discretization/GloballyConstrained/AlgebraicEquationSet_GloballyConstrained.heditsrc/LinearAlgebra/DenseLinAlg/InverseLUP.hedittest/sandbox/Adapt3D_DGBR2_RANSSA_ArtificialViscosity_ONERA_M6_toy.cppedittest/unit/pde/ArtificialViscosity/AVSensor_Source3D_Euler_btest.cppeditsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_Transpose.hedittest/unit/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_InverseLU_btest.cppedittest/unit/pde/NS/PDEEuler3D_btest.cppeditsrc/SolutionTrek/Continuation/PseudoTime/AlgebraicEquationSet_Block2x2_PTC.heditsrc/pde/ArtificialViscosity/PDEmitAVSensor3D.hedittest/unit/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_SparseMatrix_CRS_btest.cppeditsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_InverseLUP.cppsrc/Field/output_Tecplot_PDE.h96d179c2e8614ac945d8e642e6e90f0a9300ddf51595362146000https://acdl.mit.edu/csi/user/blscblscblsc@mit.edu... because if you hard code tecplot for 4 levels of grid refinement on output you get a 300Gb tecplot file in 3D ... 2020-07-21 16:09:06 -040096d179c2e8614ac945d8e642e6e90f0a9300ddf5... because if you hard code tecplot for 4 levels of grid refinement on output you get a 300Gb tecplot file in 3D ...editsrc/Field/output_Tecplot_PDE.hsrc/Meshing/EGADS/EGModel.cppsrc/Meshing/EGADS/EGFace.hsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatrixD_InverseLU_Real_Instantiate.cppsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatMul/MatMul_Native_Real.cppsrc/Meshing/EGADS/Airfoils/CubicCamber.hsrc/Meshing/EGADS/EGLine.htest/unit/Meshing/EGADS/CubicCamber_btest.cppsrc/Field/HField/HField_CG/HField_CG_impl.hsrc/Field/FieldVolume_Instantiate_3D.cppsrc/Field/HField/HField_CG.hsrc/Meshing/EGADS/Airfoils/CubicCamber.cppsrc/Meshing/EGADS/EGFace.cpptest/unit/Meshing/EGADS/EGFace_btest.cpptest/unit/Field/CMakeLists.txttest/unit/Field/NormalField_btest.cppsrc/Meshing/EGADS/EGApproximateCurve.cppsrc/Field/DistanceFunction/DistanceFunction.cppsrc/Field/CMakeLists.txtsrc/Meshing/EGADS/Airfoils/MeanlineBlade.cppsrc/Meshing/EGADS/EGApproximateCurve.htest/unit/Meshing/EGADS/MeanlineBlade_btest.cppsrc/Field/FieldVolume_CG_Cell_Instantiate_3D.cpp57abdd3a2ebb1f003d8a89b1ca0569838cde1b611595365694000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduRefactor CubicCamber. Add Normal vector field. 2020-07-21 17:08:14 -040057abdd3a2ebb1f003d8a89b1ca0569838cde1b61Refactor CubicCamber. Add Normal vector field.editsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatMul/MatMul_Native_Real.cppeditsrc/Meshing/EGADS/EGLine.hedittest/unit/Meshing/EGADS/EGFace_btest.cppeditsrc/Field/FieldVolume_Instantiate_3D.cppeditsrc/Meshing/EGADS/EGFace.heditsrc/Field/FieldVolume_CG_Cell_Instantiate_3D.cppeditsrc/Meshing/EGADS/EGFace.cppeditsrc/Meshing/EGADS/Airfoils/CubicCamber.heditsrc/Meshing/EGADS/EGApproximateCurve.cppedittest/unit/Field/CMakeLists.txteditsrc/Field/DistanceFunction/DistanceFunction.cppeditsrc/Meshing/EGADS/EGApproximateCurve.heditsrc/Meshing/EGADS/EGModel.cppeditsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatrixD_InverseLU_Real_Instantiate.cppeditsrc/Field/HField/HField_CG.heditsrc/Meshing/EGADS/Airfoils/CubicCamber.cppaddtest/unit/Field/NormalField_btest.cppedittest/unit/Meshing/EGADS/CubicCamber_btest.cppedittest/unit/Meshing/EGADS/MeanlineBlade_btest.cppeditsrc/Field/CMakeLists.txteditsrc/Field/HField/HField_CG/HField_CG_impl.heditsrc/Meshing/EGADS/Airfoils/MeanlineBlade.cppsrc/Field/NormalField/NormalField_CG_Volume.cppsrc/Field/NormalField/NormalField_CG.hbed469f99ea8fcfac06a8c1a364da732f67a264e1595376697000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduForgot files 2020-07-21 20:11:37 -0400bed469f99ea8fcfac06a8c1a364da732f67a264eForgot filesaddsrc/Field/NormalField/NormalField_CG_Volume.cppaddsrc/Field/NormalField/NormalField_CG.hsrc/Field/Field_NodalView.hsrc/Field/FieldVolume_Instantiate_3D.cppsrc/Meshing/EGADS/EGApproximateCurve.cpp1a84b80accc87d7a49f78c7a6a697a7733212cb81595379597000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdd missing includes 2020-07-21 20:59:57 -04001a84b80accc87d7a49f78c7a6a697a7733212cb8Add missing includeseditsrc/Field/FieldVolume_Instantiate_3D.cppeditsrc/Field/Field_NodalView.heditsrc/Meshing/EGADS/EGApproximateCurve.cppsrc/Discretization/GloballyConstrained/AlgebraicEquationSet_GloballyConstrained.hsrc/SolutionTrek/Continuation/Homotopy/AlgebraicEquationSet_HTC2.hc3ec121a9454f25ba8e870127f1e50b2cf1d7df51595402909000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduNumber of global constraints is now a runtime option. The global coupling uses a CRS matrix structure, as opposed to MatrixD, since the CRS structure is already there. 2020-07-22 03:28:29 -0400c3ec121a9454f25ba8e870127f1e50b2cf1d7df5Number of global constraints is now a runtime option. The global coupling uses a CRS matrix structure, as opposed to MatrixD, since the CRS structure is already there.editsrc/SolutionTrek/Continuation/Homotopy/AlgebraicEquationSet_HTC2.heditsrc/Discretization/GloballyConstrained/AlgebraicEquationSet_GloballyConstrained.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_Shur_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/SparseVector.hfc905eb81233e1fc0068cad7dbe2e36afc2ec3901595405463000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduFixed bug with small system decomposition. The matrix was incorrectly sized for runtime constraints 2020-07-22 04:11:03 -0400fc905eb81233e1fc0068cad7dbe2e36afc2ec390Fixed bug with small system decomposition. The matrix was incorrectly sized for runtime constraintseditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_Shur_Instantiate.cppeditsrc/LinearAlgebra/SparseLinAlg/SparseVector.htest/unit/Field/NormalField_btest.cpp2134c3bbcd667c4e3a74f5ac860bef050bab4a721595437356000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix field normal vector check for parallel 2020-07-22 13:02:36 -04002134c3bbcd667c4e3a74f5ac860bef050bab4a72Fix field normal vector check for paralleledittest/unit/Field/NormalField_btest.cppsrc/pde/ArtificialViscosity/AVSensor_Source2D.htest/unit/Discretization/VMSDBR2/ProjectL2_VMSD_BR2_Source_btest.cppsrc/NonLinearSolver/NewtonSolver_impl.hsrc/pde/SourceOnly/PDESourceOnly2D.htest/unit/pde/SourceOnly/PDESourceOnly2D_btest.cpptest/system/CodeConsistency/PDEmitAVSensor2D_Consistency_RANSSA_btest.cppsrc/pde/NS/PDEEuler2D.hsrc/pde/NS/PDEEulermitAVDiffusion2D.htest/unit/pde/ArtificialViscosity/AVSensor_Source2D_Euler_btest.cpptest/system/CodeConsistency/PDESourceOnly_Projection_btest.cpp48feb725a3a57fab69d4c4bf05b8a8cd3a83db371595441935000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduResolved issues that came up due to merging 2020-07-22 14:18:55 -040048feb725a3a57fab69d4c4bf05b8a8cd3a83db37Resolved issues that came up due to mergingeditsrc/NonLinearSolver/NewtonSolver_impl.heditsrc/pde/NS/PDEEuler2D.hedittest/system/CodeConsistency/PDEmitAVSensor2D_Consistency_RANSSA_btest.cppeditsrc/pde/NS/PDEEulermitAVDiffusion2D.hedittest/unit/pde/ArtificialViscosity/AVSensor_Source2D_Euler_btest.cppeditsrc/pde/ArtificialViscosity/AVSensor_Source2D.hedittest/system/CodeConsistency/PDESourceOnly_Projection_btest.cppedittest/unit/Discretization/VMSDBR2/ProjectL2_VMSD_BR2_Source_btest.cppeditsrc/pde/SourceOnly/PDESourceOnly2D.hedittest/unit/pde/SourceOnly/PDESourceOnly2D_btest.cppsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_backsolve.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixD_MatrixS_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_CRS_double.cppsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_4x4_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixD.cppsrc/Discretization/GloballyConstrained/AlgebraicEquationSet_GloballyConstrained.hsrc/LinearAlgebra/SparseLinAlg/Krylov/FGMRES_impl.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_backsolve.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_3x3_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/PETSc/PETSc_VectorSize_impl.hsrc/LinearAlgebra/SparseLinAlg/LinearSolverBase.hsrc/LinearAlgebra/SparseLinAlg/Preconditioners/ILU0_impl.hsrc/LinearAlgebra/SparseLinAlg/Preconditioners/Identity.hsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_backsolve.hsrc/LinearAlgebra/SparseLinAlg/Preconditioners/LU_SGS_impl.hsrc/SolutionTrek/Continuation/Homotopy/AlgebraicEquationSet_HTC2.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_CRS_double.cppsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_MatrixBlock_2x2_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_CRS_MatrixD.cppsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_CRS_MatrixD.cppsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixS_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_CRS_MatrixD_MatrixS_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/Krylov/FGMRES_MatrixBlock_2x2_Instantiate.cppsrc/SolutionTrek/Continuation/Homotopy/Homotopy.h2bf78f8422fdef96b78b20fbf8859492f559ed901595441948000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduFirst pass at prototyping a globally constrained algebraic equation set 2020-07-22 14:19:08 -04002bf78f8422fdef96b78b20fbf8859492f559ed90First pass at prototyping a globally constrained algebraic equation seteditsrc/LinearAlgebra/SparseLinAlg/Preconditioners/LU_SGS_impl.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixS_Instantiate.cppeditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_CRS_double.cppeditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixD_MatrixS_Instantiate.cppaddsrc/Discretization/GloballyConstrained/AlgebraicEquationSet_GloballyConstrained.heditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_CRS_MatrixD.cppeditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_backsolve.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_CRS_MatrixD_MatrixS_Instantiate.cppeditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixD.cppeditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_CRS_double.cppeditsrc/SolutionTrek/Continuation/Homotopy/AlgebraicEquationSet_HTC2.heditsrc/LinearAlgebra/SparseLinAlg/LinearSolverBase.heditsrc/LinearAlgebra/SparseLinAlg/Krylov/FGMRES_MatrixBlock_2x2_Instantiate.cppeditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_backsolve.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_3x3_Instantiate.cppeditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_4x4_Instantiate.cppeditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_CRS_MatrixD.cppeditsrc/LinearAlgebra/SparseLinAlg/Preconditioners/ILU0_impl.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETSc_VectorSize_impl.heditsrc/SolutionTrek/Continuation/Homotopy/Homotopy.heditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_backsolve.heditsrc/LinearAlgebra/SparseLinAlg/Preconditioners/Identity.heditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_MatrixBlock_2x2_Instantiate.cppeditsrc/LinearAlgebra/SparseLinAlg/Krylov/FGMRES_impl.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/tools/dot.hsrc/LinearAlgebra/SparseLinAlg/ScalarVector.hsrc/NonLinearSolver/NewtonSolver_MatrixBlock_2x2_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/ScalarMatrix_CRS.htest/sandbox/Solve2D_VMSDBR2_HOW5_VI2_AV_HTC_toy.cppsrc/Discretization/GloballyConstrained/AlgebraicEquationSet_GloballyConstrained.hsrc/LinearAlgebra/SparseLinAlg/ScalarMatrix_CRS_impl.h23e1509e929af59abe1f7d0f1db0a1d363e07a6a1595441948000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduUpdates to globally constrained equations to include condensation of matrix in PETSc 2020-07-22 14:19:08 -040023e1509e929af59abe1f7d0f1db0a1d363e07a6aUpdates to globally constrained equations to include condensation of matrix in PETSceditsrc/Discretization/GloballyConstrained/AlgebraicEquationSet_GloballyConstrained.heditsrc/NonLinearSolver/NewtonSolver_MatrixBlock_2x2_Instantiate.cppeditsrc/LinearAlgebra/SparseLinAlg/tools/dot.heditsrc/LinearAlgebra/SparseLinAlg/ScalarMatrix_CRS_impl.heditsrc/LinearAlgebra/SparseLinAlg/ScalarVector.heditsrc/LinearAlgebra/SparseLinAlg/ScalarMatrix_CRS.haddtest/sandbox/Solve2D_VMSDBR2_HOW5_VI2_AV_HTC_toy.cppeditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_Instantiate.cppsrc/SolutionTrek/Continuation/Homotopy/AlgebraicEquationSet_HTC2.hsrc/SolutionTrek/Continuation/Homotopy/Homotopy.h2187ad6605105f1928c94461a46b95458009ce191595441948000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduUpdates for first round of parallelizing the homotopy 2020-07-22 14:19:08 -04002187ad6605105f1928c94461a46b95458009ce19Updates for first round of parallelizing the homotopyeditsrc/SolutionTrek/Continuation/Homotopy/AlgebraicEquationSet_HTC2.heditsrc/SolutionTrek/Continuation/Homotopy/Homotopy.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_Instantiate.cppscripts/vera/exclusions.txtsrc/SolutionTrek/Continuation/Homotopy/Homotopy.htest/sandbox/Solve2D_VMSDBR2_HOW5_VI2_AV_HTC_toy.cppsrc/Discretization/GloballyConstrained/AlgebraicEquationSet_GloballyConstrained.htest/sandbox/Solve2D_VMSDBR2_HOW5_VI2_toy.cppsrc/Discretization/VMSDBR2/JacobianCell_VMSD_BR2.hsrc/SolutionTrek/Continuation/Homotopy/AlgebraicEquationSet_HTC2.hd05784e5cb116376d6e136fc9fdb7ee4ad385cba1595441948000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduParallel homotopy appears to be working 2020-07-22 14:19:08 -0400d05784e5cb116376d6e136fc9fdb7ee4ad385cbaParallel homotopy appears to be workingeditsrc/SolutionTrek/Continuation/Homotopy/Homotopy.heditsrc/Discretization/GloballyConstrained/AlgebraicEquationSet_GloballyConstrained.heditscripts/vera/exclusions.txtedittest/sandbox/Solve2D_VMSDBR2_HOW5_VI2_AV_HTC_toy.cppedittest/sandbox/Solve2D_VMSDBR2_HOW5_VI2_toy.cppeditsrc/Discretization/VMSDBR2/JacobianCell_VMSD_BR2.heditsrc/SolutionTrek/Continuation/Homotopy/AlgebraicEquationSet_HTC2.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_Instantiate.cppsrc/pde/NS/BCEulermitAVSensor3D.hsrc/pde/NS/BCEuler3D.cppsrc/pde/ArtificialViscosity/AVSensor_AdvectiveFlux3D.hsrc/pde/ArtificialViscosity/AVSensor_Source3D.hsrc/pde/ArtificialViscosity/PDEmitAVSensor3D.hsrc/pde/NS/PDEEulermitAVDiffusion3D.hsrc/pde/NS/PDEEulermitAVDiffusion2D.hsrc/Discretization/GloballyConstrained/AlgebraicEquationSet_GloballyConstrained.hsrc/pde/NS/BCEuler3D_mitState.hsrc/pde/SourceOnly/PDESourceOnly3D.hsrc/NonLinearSolver/NewtonSolver_MatrixBlock_2x2_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/ScalarMatrix_CRS_int.cppsrc/pde/NS/OutputNavierStokes3D.hsrc/SolutionTrek/Continuation/Homotopy/Homotopy.hsrc/NonLinearSolver/LineUpdate/HalvingSearchLineUpdate_MatrixBlock_2x2_Instantiate.cppsrc/pde/NS/PDEEuler3D.hsrc/SolutionTrek/Continuation/Homotopy/AlgebraicEquationSet_HTC2.h1af2b1592af28be43e543b196e6038d969801d411595442604000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduA few tweeks on the homotopy and 3D set up 2020-07-22 14:30:04 -04001af2b1592af28be43e543b196e6038d969801d41A few tweeks on the homotopy and 3D set upeditsrc/pde/ArtificialViscosity/AVSensor_AdvectiveFlux3D.heditsrc/SolutionTrek/Continuation/Homotopy/Homotopy.heditsrc/pde/NS/PDEEulermitAVDiffusion3D.heditsrc/LinearAlgebra/SparseLinAlg/ScalarMatrix_CRS_int.cppeditsrc/pde/NS/BCEuler3D_mitState.heditsrc/pde/NS/PDEEuler3D.heditsrc/Discretization/GloballyConstrained/AlgebraicEquationSet_GloballyConstrained.heditsrc/pde/NS/PDEEulermitAVDiffusion2D.heditsrc/pde/ArtificialViscosity/PDEmitAVSensor3D.heditsrc/SolutionTrek/Continuation/Homotopy/AlgebraicEquationSet_HTC2.heditsrc/pde/NS/BCEuler3D.cppaddsrc/pde/SourceOnly/PDESourceOnly3D.heditsrc/pde/NS/BCEulermitAVSensor3D.heditsrc/NonLinearSolver/LineUpdate/HalvingSearchLineUpdate_MatrixBlock_2x2_Instantiate.cppeditsrc/NonLinearSolver/NewtonSolver_MatrixBlock_2x2_Instantiate.cppaddsrc/pde/NS/OutputNavierStokes3D.heditsrc/pde/ArtificialViscosity/AVSensor_Source3D.hsrc/Discretization/GloballyConstrained/AlgebraicEquationSet_GloballyConstrained.hsrc/SolutionTrek/Continuation/Homotopy/AlgebraicEquationSet_HTC2.h4c9b613d6460d1aeec41326d64377589aebfef071595442604000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduUpdated interface for globally constrained equations so the jacobian for the pde and the constraints are in seperate functions 2020-07-22 14:30:04 -04004c9b613d6460d1aeec41326d64377589aebfef07Updated interface for globally constrained equations so the jacobian for the pde and the constraints are in seperate functionseditsrc/SolutionTrek/Continuation/Homotopy/AlgebraicEquationSet_HTC2.heditsrc/Discretization/GloballyConstrained/AlgebraicEquationSet_GloballyConstrained.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_Instantiate.cpp7b3bffead771721f3b8005b7d1c7d3666e09ba361595442604000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduThe small problem for static condensation is calculated on one processor then broadcast, that way there are on finite precision inconsistencies 2020-07-22 14:30:04 -04007b3bffead771721f3b8005b7d1c7d3666e09ba36The small problem for static condensation is calculated on one processor then broadcast, that way there are on finite precision inconsistencieseditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_Instantiate.cppsrc/Discretization/Block/AlgebraicEquationSet_Block2x2_VecS3_Real.cppsrc/pde/ArtificialViscosity/PDEmitAVSensor3D.hsrc/LinearAlgebra/SparseLinAlg/Preconditioners/LU_SGS.htest/system/CodeConsistency/PDEEulermitAVDiffusion3D_RANSSA_Consistency_btest.cpptest/unit/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_Decompose_LUP_btest.cpptest/system/CodeConsistency/PDEmitAVSensor3D_Consistency_RANSSA_btest.cppsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_Decompose_LU.cppsrc/pde/NS/BCNavierStokes3D_mitState.htest/sandbox/Solve3D_DGBR2_RANSSA_CRM_toy.cppsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_Transpose.htest/unit/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_DenseMatrix_btest.cppsrc/LinearAlgebra/MatrixSizeType.hsrc/LinearAlgebra/MatrixViewType.hsrc/pde/NS/PDEEuler3D.hsrc/LinearAlgebra/SparseLinAlg/ScalarMatrix_CRS_impl.hsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2.htest/unit/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_InverseLUP_btest.cpptest/sandbox/Solve3D_VMSDBR2_BlottnerSphere_AV_HTC_toy.cpptest/system/CodeConsistency/PDEEulermitAVDiffusion3D_Consistency_btest.cppsrc/SolutionTrek/Continuation/ImplicitResidualSmoothing/AlgebraicEquationSet_Block2x2_IRS.htest/unit/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_Decompose_LU_btest.cpptest/unit/pde/ArtificialViscosity/AVSensor_Source3D_Euler_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block2x2_DGBR2_Line_Euler1DSensor_btest.cppsrc/pde/NS/BCEulermitAVSensor2D.htest/sandbox/Solve3D_CGStabilized_Euler_Bump_ArtificialViscosity_toy.cpptest/sandbox/Solve1D_DGBR2_Burgers_ArtificialViscosity_toy.cppsrc/Discretization/Block/AlgebraicEquationSet_Block2x2.hsrc/LinearAlgebra/Transpose.hsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_MatrixBlock_2x2_Instantiate.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block2x2_Triangle_AD_btest.cppsrc/NonLinearSolver/NewtonSolver_MatrixBlock_2x2_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/ScalarMatrix_CRS.hsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_InverseLUP.hsrc/LinearAlgebra/SparseLinAlg/Krylov/FGMRES_MatrixBlock_2x2_Instantiate.cppsrc/LinearAlgebra/NonZeroPatternType.htest/sandbox/Adapt3D_DGBR2_RANSSA_ArtificialViscosity_ONERA_M6_toy.cppsrc/NonLinearSolver/LineUpdate/HalvingSearchLineUpdate_MatrixBlock_2x2_Instantiate.cppsrc/LinearAlgebra/DenseLinAlg/InverseLUP.htest/unit/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_Transpose_btest.cppsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_InverseLU.cppsrc/pde/NS/BCEulermitAVSensor3D.hsrc/LinearAlgebra/SparseLinAlg/Preconditioners/LU_SGS_MatrixBlock_2x2_Instantiate.cppsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_Decompose_LUP.htest/unit/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_SparseMatrix_CRS_btest.cppsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_InverseLU.htest/system/BlockSolve/Block_1D_Decoupled_AD_btest.cpptest/unit/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_InverseLU_btest.cppsrc/LinearAlgebra/SparseLinAlg/WriteMatrixMarketFile.hsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_Decompose_LUP.cpptest/system/CodeConsistency/PDEmitAVSensor3D_Consistency_btest.cppsrc/Discretization/GloballyConstrained/AlgebraicEquationSet_GloballyConstrained.htest/unit/Discretization/Block/AlgebraicEquationSet_Block2x2_DGBR2_Triangle_BuckleyLeverett_AV_btest.cpptest/unit/pde/NS/PDEEulermitAVDiffusion3D_btest.cpptest/sandbox/Solve1D_DGBR2_BuckleyLeverett_ArtificialViscosity_ST_toy.cpptest/system/BlockSolve/Block_1D_Decoupled_Burgers_btest.cppsrc/LinearAlgebra/VectorType.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_NoShur_Instantiate.cppsrc/LinearAlgebra/BlockLinAlg/BlockLinAlg_Type.htest/sandbox/Adapt3D_CGStabilized_RANSSA_ArtificialViscosity_ONERA_M6_toy.cppsrc/Discretization/Block/AlgebraicEquationSet_Block2x2_impl.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_Instantiate.cppsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_Inverse.htest/system/CodeConsistency/BCEulermitAVSensor3D_Consistency_btest.cpptest/sandbox/Adapt3D_DGBR2_RANSSA_CRM_toy.cppsrc/LinearAlgebra/TransposeTraits.htest/unit/LinearAlgebra/SparseLinAlg/UMFPACK_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block2x2_DGBR2_BuckleyLeverett_ArtificialViscosity_ST_btest.cpptest/sandbox/Solve3D_CGStabilized_RANSSA_OneraM6_ArtificialViscosity_toy.cppsrc/LinearAlgebra/SparseLinAlg/CMakeLists.txtsrc/pde/ArtificialViscosity/PDEmitAVSensor2D.hsrc/Discretization/Block/AlgebraicEquationSet_Block2x2_VecS4_Real.cppsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_Shur_Instantiate.cppsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_InverseLUP.cppsrc/Discretization/Block/AlgebraicEquationSet_Block2x2_Real_Real.cppsrc/LinearAlgebra/DenseLinAlg/InverseLU.htest/unit/LinearAlgebra/Heat1D_btest.htest/unit/pde/NS/PDEEuler3D_btest.cppsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_Decompose_LU.hsrc/SolutionTrek/Continuation/PseudoTime/AlgebraicEquationSet_Block2x2_PTC.htest/system/CodeConsistency/BCEulermitAVSensor3D_Consistency_RANSSA_btest.cppsrc/LinearAlgebra/SparseLinAlg/ScalarMatrix_CRS_int.cppsrc/Adaptation/MOESS/SolverInterface_DGBR2_Block2x2.htest/sandbox/Solve3D_CGStabilized_RANSSA_OneraM6_Subsonic_ArtificialViscosity_toy.cpptest/unit/pde/ArtificialViscosity/AVSensor_ViscousFlux3D_btest.cpptest/unit/pde/ArtificialViscosity/PDEmitAVSensor3D_btest.cppfb6fd15ea86de426504acf600b7f65a30840b0711595442721000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduAdded template parameter to determine if (PETSc) should do a shur complement from block 2x2. Note, if we're not using PETSc, then the block matrix is solved as is. This is because the shur complement is only a work around for parallel communication issues. 2020-07-22 14:32:01 -0400fb6fd15ea86de426504acf600b7f65a30840b071Added template parameter to determine if (PETSc) should do a shur complement from block 2x2. Note, if we're not using PETSc, then the block matrix is solved as is. This is because the shur complement is only a work around for parallel communication issues.editsrc/LinearAlgebra/MatrixSizeType.haddsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_Shur_Instantiate.cppeditsrc/LinearAlgebra/VectorType.hdeletesrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_Instantiate.cppeditsrc/LinearAlgebra/SparseLinAlg/Krylov/FGMRES_MatrixBlock_2x2_Instantiate.cppedittest/unit/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_Decompose_LU_btest.cppeditsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2.heditsrc/LinearAlgebra/SparseLinAlg/WriteMatrixMarketFile.heditsrc/Discretization/Block/AlgebraicEquationSet_Block2x2.hedittest/sandbox/Adapt3D_DGBR2_RANSSA_CRM_toy.cppeditsrc/Discretization/GloballyConstrained/AlgebraicEquationSet_GloballyConstrained.heditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_MatrixBlock_2x2_Instantiate.cppedittest/unit/pde/ArtificialViscosity/AVSensor_Source3D_Euler_btest.cppeditsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_Decompose_LUP.cppedittest/unit/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_InverseLU_btest.cppeditsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_Inverse.hedittest/unit/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_InverseLUP_btest.cppaddtest/sandbox/Solve3D_VMSDBR2_BlottnerSphere_AV_HTC_toy.cppeditsrc/Discretization/Block/AlgebraicEquationSet_Block2x2_Real_Real.cppeditsrc/LinearAlgebra/MatrixViewType.hedittest/sandbox/Solve1D_DGBR2_Burgers_ArtificialViscosity_toy.cppedittest/sandbox/Solve3D_CGStabilized_Euler_Bump_ArtificialViscosity_toy.cppedittest/unit/Discretization/Block/AlgebraicEquationSet_Block2x2_DGBR2_BuckleyLeverett_ArtificialViscosity_ST_btest.cppedittest/system/CodeConsistency/PDEEulermitAVDiffusion3D_RANSSA_Consistency_btest.cppeditsrc/pde/NS/PDEEuler3D.hedittest/system/BlockSolve/Block_1D_Decoupled_Burgers_btest.cppedittest/unit/LinearAlgebra/SparseLinAlg/UMFPACK_btest.cppedittest/system/CodeConsistency/BCEulermitAVSensor3D_Consistency_btest.cppeditsrc/LinearAlgebra/SparseLinAlg/CMakeLists.txteditsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_Decompose_LUP.heditsrc/LinearAlgebra/SparseLinAlg/ScalarMatrix_CRS.heditsrc/LinearAlgebra/BlockLinAlg/BlockLinAlg_Type.hedittest/unit/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_DenseMatrix_btest.cppaddsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_NoShur_Instantiate.cppedittest/unit/pde/ArtificialViscosity/PDEmitAVSensor3D_btest.cppedittest/sandbox/Adapt3D_CGStabilized_RANSSA_ArtificialViscosity_ONERA_M6_toy.cppedittest/system/CodeConsistency/PDEmitAVSensor3D_Consistency_RANSSA_btest.cppeditsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_InverseLUP.cppedittest/sandbox/Solve3D_CGStabilized_RANSSA_OneraM6_ArtificialViscosity_toy.cppeditsrc/pde/NS/BCEulermitAVSensor2D.heditsrc/LinearAlgebra/Transpose.hedittest/unit/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_SparseMatrix_CRS_btest.cppeditsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_InverseLUP.hedittest/unit/Discretization/Block/AlgebraicEquationSet_Block2x2_Triangle_AD_btest.cppeditsrc/Discretization/Block/AlgebraicEquationSet_Block2x2_VecS4_Real.cppedittest/system/CodeConsistency/BCEulermitAVSensor3D_Consistency_RANSSA_btest.cppeditsrc/Discretization/Block/AlgebraicEquationSet_Block2x2_impl.hedittest/unit/Discretization/Block/AlgebraicEquationSet_Block2x2_DGBR2_Triangle_BuckleyLeverett_AV_btest.cppeditsrc/pde/ArtificialViscosity/PDEmitAVSensor3D.heditsrc/Discretization/Block/AlgebraicEquationSet_Block2x2_VecS3_Real.cppeditsrc/pde/ArtificialViscosity/PDEmitAVSensor2D.heditsrc/pde/NS/BCNavierStokes3D_mitState.hedittest/unit/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_Transpose_btest.cppeditsrc/LinearAlgebra/SparseLinAlg/Preconditioners/LU_SGS_MatrixBlock_2x2_Instantiate.cppedittest/sandbox/Adapt3D_DGBR2_RANSSA_ArtificialViscosity_ONERA_M6_toy.cppedittest/sandbox/Solve3D_DGBR2_RANSSA_CRM_toy.cppedittest/unit/LinearAlgebra/Heat1D_btest.heditsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_Decompose_LU.heditsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_Decompose_LU.cppeditsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_InverseLU.cppeditsrc/LinearAlgebra/SparseLinAlg/ScalarMatrix_CRS_impl.hedittest/system/CodeConsistency/PDEmitAVSensor3D_Consistency_btest.cppeditsrc/LinearAlgebra/NonZeroPatternType.hedittest/system/CodeConsistency/PDEEulermitAVDiffusion3D_Consistency_btest.cppeditsrc/LinearAlgebra/SparseLinAlg/ScalarMatrix_CRS_int.cppedittest/unit/pde/NS/PDEEuler3D_btest.cppeditsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_InverseLU.heditsrc/SolutionTrek/Continuation/PseudoTime/AlgebraicEquationSet_Block2x2_PTC.hedittest/unit/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_Decompose_LUP_btest.cppeditsrc/LinearAlgebra/SparseLinAlg/Preconditioners/LU_SGS.hedittest/system/BlockSolve/Block_1D_Decoupled_AD_btest.cppedittest/unit/pde/NS/PDEEulermitAVDiffusion3D_btest.cppeditsrc/LinearAlgebra/TransposeTraits.heditsrc/NonLinearSolver/NewtonSolver_MatrixBlock_2x2_Instantiate.cppeditsrc/pde/NS/BCEulermitAVSensor3D.hedittest/sandbox/Solve3D_CGStabilized_RANSSA_OneraM6_Subsonic_ArtificialViscosity_toy.cppeditsrc/NonLinearSolver/LineUpdate/HalvingSearchLineUpdate_MatrixBlock_2x2_Instantiate.cppedittest/unit/pde/ArtificialViscosity/AVSensor_ViscousFlux3D_btest.cppeditsrc/LinearAlgebra/DenseLinAlg/InverseLU.heditsrc/Adaptation/MOESS/SolverInterface_DGBR2_Block2x2.hedittest/sandbox/Solve1D_DGBR2_BuckleyLeverett_ArtificialViscosity_ST_toy.cppedittest/unit/Discretization/Block/AlgebraicEquationSet_Block2x2_DGBR2_Line_Euler1DSensor_btest.cppeditsrc/LinearAlgebra/DenseLinAlg/InverseLUP.heditsrc/SolutionTrek/Continuation/ImplicitResidualSmoothing/AlgebraicEquationSet_Block2x2_IRS.heditsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_Transpose.hsrc/Field/output_Tecplot_PDE.h8f61be5b36517b015ef279cc2c388f1b80c258861595442721000https://acdl.mit.edu/csi/user/blscblscblsc@mit.edu... because if you hard code tecplot for 4 levels of grid refinement on output you get a 300Gb tecplot file in 3D ... 2020-07-22 14:32:01 -04008f61be5b36517b015ef279cc2c388f1b80c25886... because if you hard code tecplot for 4 levels of grid refinement on output you get a 300Gb tecplot file in 3D ...editsrc/Field/output_Tecplot_PDE.hsrc/Discretization/GloballyConstrained/AlgebraicEquationSet_GloballyConstrained.hsrc/SolutionTrek/Continuation/Homotopy/AlgebraicEquationSet_HTC2.h9f5cdae2cb29d5ff78bd31e0ce0fede32dc3bba21595442721000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduNumber of global constraints is now a runtime option. The global coupling uses a CRS matrix structure, as opposed to MatrixD, since the CRS structure is already there. 2020-07-22 14:32:01 -04009f5cdae2cb29d5ff78bd31e0ce0fede32dc3bba2Number of global constraints is now a runtime option. The global coupling uses a CRS matrix structure, as opposed to MatrixD, since the CRS structure is already there.editsrc/Discretization/GloballyConstrained/AlgebraicEquationSet_GloballyConstrained.heditsrc/SolutionTrek/Continuation/Homotopy/AlgebraicEquationSet_HTC2.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_Shur_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/SparseVector.h35e64fe517df7a33917ab5cd55fb043d75cdbe611595442721000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduFixed bug with small system decomposition. The matrix was incorrectly sized for runtime constraints 2020-07-22 14:32:01 -040035e64fe517df7a33917ab5cd55fb043d75cdbe61Fixed bug with small system decomposition. The matrix was incorrectly sized for runtime constraintseditsrc/LinearAlgebra/SparseLinAlg/SparseVector.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_Shur_Instantiate.cppsrc/pde/ArtificialViscosity/PDEmitAVSensor3D.hsrc/pde/NS/PDEEulermitAVDiffusion3D.hbdfb2225f202c148a0c06d835e8aadbe5725fd721595454584000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduClean up after merging from develop 2020-07-22 17:49:44 -0400bdfb2225f202c148a0c06d835e8aadbe5725fd72Clean up after merging from developeditsrc/pde/ArtificialViscosity/PDEmitAVSensor3D.heditsrc/pde/NS/PDEEulermitAVDiffusion3D.hsrc/pde/ArtificialViscosity/AVSensor_Source3D.h000e5253af5e6b6d861177e1eb67b5b3430ab8631595458830000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduMore merging issues 2020-07-22 19:00:30 -0400000e5253af5e6b6d861177e1eb67b5b3430ab863More merging issueseditsrc/pde/ArtificialViscosity/AVSensor_Source3D.hsrc/pde/NS/BCEulermitAVSensor3D.htest/unit/Field/NormalField_btest.cpptest/system/CodeConsistency/CMakeLists.txttest/unit/pde/NS/PDEEuler3D_RotorSource_btest.cppsrc/pde/NS/BCEuler3D_mitState.htest/unit/Discretization/VMSDBR2/CMakeLists.txtsrc/pde/ArtificialViscosity/PDEmitAVSensor3D.hsrc/pde/NS/PDEEuler3D_RotorSource.htest/unit/pde/ArtificialViscosity/PDEmitAVSensor3D_btest.cppsrc/pde/NS/PDEEuler3D.hsrc/pde/NS/PDEEulermitAVDiffusion3D.h9eaf627097a09656f80b33692be30bd3d0d53e0e1595532409000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded RotorSource for Euler equations 2020-07-23 15:26:49 -04009eaf627097a09656f80b33692be30bd3d0d53e0eAdded RotorSource for Euler equationsedittest/unit/pde/ArtificialViscosity/PDEmitAVSensor3D_btest.cppeditsrc/pde/NS/PDEEuler3D.haddsrc/pde/NS/PDEEuler3D_RotorSource.heditsrc/pde/NS/PDEEulermitAVDiffusion3D.hedittest/system/CodeConsistency/CMakeLists.txtaddtest/unit/pde/NS/PDEEuler3D_RotorSource_btest.cppeditsrc/pde/NS/BCEulermitAVSensor3D.hedittest/unit/Field/NormalField_btest.cppeditsrc/pde/ArtificialViscosity/PDEmitAVSensor3D.heditsrc/pde/NS/BCEuler3D_mitState.hedittest/unit/Discretization/VMSDBR2/CMakeLists.txtsrc/pde/NS/BCEulermitAVSensor3D.hsrc/Meshing/refine/XField_refine.cppsrc/pde/ArtificialViscosity/AVSensor_Source3D.hsrc/Field/output_Tecplot_PDE.h9113bd91ac510ccf26d3b78d1700cd5b806a3e5f1595532605000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduVarious small fixes 2020-07-23 15:30:05 -04009113bd91ac510ccf26d3b78d1700cd5b806a3e5fVarious small fixeseditsrc/Meshing/refine/XField_refine.cppeditsrc/pde/NS/BCEulermitAVSensor3D.heditsrc/pde/ArtificialViscosity/AVSensor_Source3D.heditsrc/Field/output_Tecplot_PDE.htest/unit/pde/NS/PDEEulermitAVDiffusion3D_btest.cppsrc/pde/NS/PDEEuler3D_RotorSource.h0f37c607228b1e0da4703ff4a702e5ea51ef9b301595533995000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix compile error 2020-07-23 15:53:15 -04000f37c607228b1e0da4703ff4a702e5ea51ef9b30Fix compile erroredittest/unit/pde/NS/PDEEulermitAVDiffusion3D_btest.cppeditsrc/pde/NS/PDEEuler3D_RotorSource.hsrc/pde/NS/PDEEuler3D.hsrc/pde/ArtificialViscosity/AVSensor_Source3D.h538abcf9000814c7e430110a714fe376d02e703a1595537657000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduA few more fixes 2020-07-23 16:54:17 -0400538abcf9000814c7e430110a714fe376d02e703aA few more fixeseditsrc/pde/ArtificialViscosity/AVSensor_Source3D.heditsrc/pde/NS/PDEEuler3D.htest/unit/pde/NS/PDEEulermitAVDiffusion3D_btest.cppsrc/pde/NS/PDEEuler3D.h619caaf050471926901065b872e68ccf2b4bf9bd1595540736000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix unit test error 2020-07-23 17:45:36 -0400619caaf050471926901065b872e68ccf2b4bf9bdFix unit test erroreditsrc/pde/NS/PDEEuler3D.hedittest/unit/pde/NS/PDEEulermitAVDiffusion3D_btest.cppsrc/pde/TCNE/Q1DTCNEConservative.htest/unit/pde/TCNE/Q1DConservative_btest.cpptest/unit/pde/TCNE/TCNEGasModel_StatMech_btest.cppsrc/pde/TCNE/PDETCNEEuler1D.htest/unit/pde/TCNE/PDETCNEEuler1D_btest.cppsrc/pde/TCNE/TCNEChemistryModels.htest/unit/pde/TCNE/TCNEChemistryModels_btest.cppsrc/pde/TCNE/TCNEGasModel_StatMech.htest/unit/pde/TCNE/BCTCNEEuler1D_btest.cpp16407c31e053dd875e5c957ccef71b60fdee322e1595547882000https://acdl.mit.edu/csi/user/ksaboksaboksabo@mit.eduBulk of unit tests done. 2020-07-23 16:44:42 -070016407c31e053dd875e5c957ccef71b60fdee322eBulk of unit tests done.edittest/unit/pde/TCNE/TCNEGasModel_StatMech_btest.cppeditsrc/pde/TCNE/Q1DTCNEConservative.hedittest/unit/pde/TCNE/TCNEChemistryModels_btest.cppedittest/unit/pde/TCNE/BCTCNEEuler1D_btest.cppedittest/unit/pde/TCNE/PDETCNEEuler1D_btest.cppeditsrc/pde/TCNE/TCNEChemistryModels.heditsrc/pde/TCNE/PDETCNEEuler1D.heditsrc/pde/TCNE/TCNEGasModel_StatMech.hedittest/unit/pde/TCNE/Q1DConservative_btest.cppCMakeInclude/Finds/FindREFINE.cmakeCMakeInclude/Builds/BuildREFINE.cmakef70aabe312ef0666ab7988cc977aa63d84f0ed721595552592000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdate refine libraries 2020-07-23 21:03:12 -0400f70aabe312ef0666ab7988cc977aa63d84f0ed72Update refine librarieseditCMakeInclude/Finds/FindREFINE.cmakeeditCMakeInclude/Builds/BuildREFINE.cmaketest/unit/Discretization/CMakeLists.txttest/unit/LinearAlgebra/SparseLinAlg/PETSc/PETSc_btest.cpptest/unit/LinearAlgebra/Heat1D_btest.h5719c65a4738d4cc1d0a6c6723b43d916dbb51f21595557043000https://acdl.mit.edu/csi/user/blscblscblsc@mit.edusrc/ 2020-07-23 22:17:23 -04005719c65a4738d4cc1d0a6c6723b43d916dbb51f2src/edittest/unit/Discretization/CMakeLists.txtedittest/unit/LinearAlgebra/Heat1D_btest.hedittest/unit/LinearAlgebra/SparseLinAlg/PETSc/PETSc_btest.cppsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_Shur_Instantiate.cpptest/unit/Discretization/GloballyConstrained/AlgebraicEquationSet_GloballyConstrained_btest.cpptest/unit/Discretization/GloballyConstrained/CMakeLists.txtsrc/Discretization/GloballyConstrained/AlgebraicEquationSet_GloballyConstrained.hsrc/SolutionTrek/Continuation/Homotopy/AlgebraicEquationSet_HTC2.hfeb538ebc816e589e34471d885688ec2e2d6ba9c1595557120000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduMissing unit tests and ability to daisy chain globally constrained algebraic equation sets 2020-07-23 22:18:40 -0400feb538ebc816e589e34471d885688ec2e2d6ba9cMissing unit tests and ability to daisy chain globally constrained algebraic equation setsaddtest/unit/Discretization/GloballyConstrained/AlgebraicEquationSet_GloballyConstrained_btest.cppaddtest/unit/Discretization/GloballyConstrained/CMakeLists.txteditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_Shur_Instantiate.cppeditsrc/SolutionTrek/Continuation/Homotopy/AlgebraicEquationSet_HTC2.heditsrc/Discretization/GloballyConstrained/AlgebraicEquationSet_GloballyConstrained.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_Shur_Instantiate.cppb48e723723ce27361009a5e2cd060afd776d6b911595564943000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduMissed an update for the serial version of PETSc 2020-07-24 00:29:03 -0400b48e723723ce27361009a5e2cd060afd776d6b91Missed an update for the serial version of PETSceditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_Shur_Instantiate.cppsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion3D.hsrc/pde/ArtificialViscosity/AVSensor_AdvectiveFlux3D.hsrc/pde/NDConvert/PDENDConvertSpaceTime3D.hCMakeInclude/Builds/BuildREFINE.cmakesrc/pde/NS/PDERANSSA2D.hsrc/pde/NDConvert/PDENDConvertSpaceTime1D.hsrc/pde/ArtificialViscosity/PDEmitAVSensor3D.hsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion1D.hsrc/pde/NS/PDEEulermitAVDiffusion3D.hsrc/pde/AdvectionDiffusion/AdvectiveFlux1D.hsrc/pde/NS/Roe.hsrc/pde/AdvectionDiffusion/AdvectiveFlux3D.hsrc/Discretization/VMSDBR2/IntegrandTrace_VMSD_BR2.hsrc/pde/NDConvert/PDENDConvertSpace2D.hsrc/pde/ArtificialViscosity/AVSensor_AdvectiveFlux2D.hsrc/pde/AdvectionDiffusion/Source2D.hsrc/pde/NS/PDEEuler3D.hsrc/SolutionTrek/Continuation/Homotopy/PDEHomotopy.hsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion2D.hsrc/pde/NS/PDERANSSA3D.hsrc/pde/NS/PDEEulermitAVDiffusion2D.hsrc/pde/ArtificialViscosity/PDEmitAVSensor2D.hCMakeInclude/Finds/FindREFINE.cmakesrc/pde/AdvectionDiffusion/AdvectiveFlux2D.hsrc/pde/AdvectionDiffusion/Source3D.hsrc/pde/NS/IsmailRoe.hsrc/pde/SourceOnly/PDESourceOnly2D.hsrc/pde/AdvectionDiffusion/Source1D.hsrc/pde/NS/PDEEuler2D.hsrc/pde/NDConvert/PDENDConvertSpace3D.hsrc/pde/NDConvert/PDENDConvertSpace1D.hf7e4e045580b0dbe6d8e567b20b006baff5601301595590492000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFurther speed improvements 2020-07-24 07:34:52 -0400f7e4e045580b0dbe6d8e567b20b006baff560130Further speed improvementseditCMakeInclude/Builds/BuildREFINE.cmakeeditsrc/pde/NS/PDEEulermitAVDiffusion2D.heditsrc/pde/SourceOnly/PDESourceOnly2D.heditsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion2D.heditsrc/pde/ArtificialViscosity/AVSensor_AdvectiveFlux2D.heditsrc/pde/AdvectionDiffusion/AdvectiveFlux3D.heditsrc/pde/AdvectionDiffusion/AdvectiveFlux1D.heditsrc/pde/NS/PDEEuler3D.heditsrc/pde/NS/PDEEuler2D.heditsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion1D.heditsrc/pde/AdvectionDiffusion/Source3D.heditsrc/pde/ArtificialViscosity/PDEmitAVSensor2D.heditsrc/pde/AdvectionDiffusion/Source1D.heditsrc/pde/NDConvert/PDENDConvertSpace1D.heditsrc/pde/NS/Roe.heditCMakeInclude/Finds/FindREFINE.cmakeeditsrc/Discretization/VMSDBR2/IntegrandTrace_VMSD_BR2.heditsrc/SolutionTrek/Continuation/Homotopy/PDEHomotopy.heditsrc/pde/ArtificialViscosity/AVSensor_AdvectiveFlux3D.heditsrc/pde/NS/PDEEulermitAVDiffusion3D.heditsrc/pde/NS/PDERANSSA3D.heditsrc/pde/NS/PDERANSSA2D.heditsrc/pde/NDConvert/PDENDConvertSpaceTime1D.heditsrc/pde/NDConvert/PDENDConvertSpace2D.heditsrc/pde/ArtificialViscosity/PDEmitAVSensor3D.heditsrc/pde/AdvectionDiffusion/Source2D.heditsrc/pde/NDConvert/PDENDConvertSpace3D.heditsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion3D.heditsrc/pde/NDConvert/PDENDConvertSpaceTime3D.heditsrc/pde/NS/IsmailRoe.heditsrc/pde/AdvectionDiffusion/AdvectiveFlux2D.hsrc/Discretization/VMSDBR2/IntegrandTrace_VMSD_BR2.hCMakeInclude/Builds/BuildREFINE.cmakeCMakeInclude/Builds/BuildPARMETIS.cmakedc5315bdc5a2ddd2f79fcdf76012d9c2aabcf07c1595611138000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix VMSDBR2 adjoint bug. Update refine build. 2020-07-24 13:18:58 -0400dc5315bdc5a2ddd2f79fcdf76012d9c2aabcf07cFix VMSDBR2 adjoint bug. Update refine build.editsrc/Discretization/VMSDBR2/IntegrandTrace_VMSD_BR2.heditCMakeInclude/Builds/BuildPARMETIS.cmakeeditCMakeInclude/Builds/BuildREFINE.cmakesrc/Discretization/Galerkin/Stabilization_Galerkin.hsrc/pde/NS/PDEEuler3D_RotorSource.hsrc/pde/NS/PDEEulermitAVDiffusion2D.htest/unit/pde/NS/PDEEuler3D_RotorSource_btest.cppab50d48f9186e642d09a8ac2070c113cdda22bf21595697187000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduSome fixes for the Rotor source 2020-07-25 13:13:07 -0400ab50d48f9186e642d09a8ac2070c113cdda22bf2Some fixes for the Rotor sourceeditsrc/pde/NS/PDEEuler3D_RotorSource.heditsrc/Discretization/Galerkin/Stabilization_Galerkin.heditsrc/pde/NS/PDEEulermitAVDiffusion2D.hedittest/unit/pde/NS/PDEEuler3D_RotorSource_btest.cpptest/unit/Field/NormalField_btest.cppsrc/Field/FieldVolume_DG_Cell_Instantiate_3D.cppsrc/Field/CMakeLists.txtsrc/Field/NormalField/NormalField.hsrc/Field/NormalField/NormalField_CG.hsrc/Field/NormalField/NormalField_CG_Volume.cppsrc/pde/NS/PDEEuler3D_RotorSource.hsrc/Field/NormalField/NormalField_Volume.cpp4af7f5b612ed1b45f083206c42b895a22588ff321595705420000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduTrying DG Normal vector field 2020-07-25 15:30:20 -04004af7f5b612ed1b45f083206c42b895a22588ff32Trying DG Normal vector fielddeletesrc/Field/NormalField/NormalField_CG.hedittest/unit/Field/NormalField_btest.cppdeletesrc/Field/NormalField/NormalField_CG_Volume.cppaddsrc/Field/NormalField/NormalField_Volume.cppeditsrc/pde/NS/PDEEuler3D_RotorSource.heditsrc/Field/FieldVolume_DG_Cell_Instantiate_3D.cppeditsrc/Field/CMakeLists.txtaddsrc/Field/NormalField/NormalField.hsrc/pde/NS/PDEEuler3D_RotorSource.htest/unit/pde/NS/PDEEuler3D_RotorSource_btest.cpp7a0d6db22637c89811306cc494d35cea06f29e5a1595794175000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduCorrection to Rotor source 2020-07-26 16:09:35 -04007a0d6db22637c89811306cc494d35cea06f29e5aCorrection to Rotor sourceeditsrc/pde/NS/PDEEuler3D_RotorSource.hedittest/unit/pde/NS/PDEEuler3D_RotorSource_btest.cppsrc/pde/NS/PDEEuler3D_RotorSource.htest/unit/pde/NS/PDEEuler3D_RotorSource_btest.cppeed475188eeb060770e6e7d5051d306f5115b6b01595795215000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduOne more fix to Rotor source 2020-07-26 16:26:55 -0400eed475188eeb060770e6e7d5051d306f5115b6b0One more fix to Rotor sourceedittest/unit/pde/NS/PDEEuler3D_RotorSource_btest.cppeditsrc/pde/NS/PDEEuler3D_RotorSource.hsrc/pde/NS/PDEEuler3D_RotorSource.h9f720dd7ec2b8ae9039a1b0b40f5cd0ce2de2c221595795389000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduOne more fix 2020-07-26 16:29:49 -04009f720dd7ec2b8ae9039a1b0b40f5cd0ce2de2c22One more fixeditsrc/pde/NS/PDEEuler3D_RotorSource.htest/unit/pde/TCNE/Q1DConservative_btest.cppcb76fca2efb4b7d91d15bbc18f3e7c2eb807ede61595871632000https://acdl.mit.edu/csi/user/ksaboksaboksabo@mit.eduupdated file names 2020-07-27 10:40:32 -0700cb76fca2efb4b7d91d15bbc18f3e7c2eb807ede6updated file namesdeletetest/unit/pde/TCNE/Q1DConservative_btest.cpptest/unit/pde/TCNE/Q1DTCNEConservative_btest.cpptest/unit/pde/TCNE/Q1DConservative_btest_bu.cpp3879a8fb7ddd8b32982fe16101503f6a9b67b6021595871741000https://acdl.mit.edu/csi/user/ksaboksaboksabo@mit.eduupdated file names (round 2) 2020-07-27 10:42:21 -07003879a8fb7ddd8b32982fe16101503f6a9b67b602updated file names (round 2)addtest/unit/pde/TCNE/Q1DTCNEConservative_btest.cppaddtest/unit/pde/TCNE/Q1DConservative_btest_bu.cppsrc/pde/TCNE/Q1DTCNEConservative.htest/unit/pde/TCNE/PDETCNEEuler1D_btest.cppsrc/pde/TCNE/TCNEChemistryModels.htest/unit/pde/TCNE/TCNEChemistryModels_btest.cpptest/unit/pde/TCNE/Q1DTCNEConservative_btest.cppsrc/pde/TCNE/PDETCNEEuler1D.h90f63242ac060dd15446fd13d91f5706de739df81595882464000https://acdl.mit.edu/csi/user/ksaboksaboksabo@mit.eduFixed warnings and other minor things 2020-07-27 13:41:04 -070090f63242ac060dd15446fd13d91f5706de739df8Fixed warnings and other minor thingsedittest/unit/pde/TCNE/PDETCNEEuler1D_btest.cppedittest/unit/pde/TCNE/Q1DTCNEConservative_btest.cppeditsrc/pde/TCNE/Q1DTCNEConservative.heditsrc/pde/TCNE/PDETCNEEuler1D.heditsrc/pde/TCNE/TCNEChemistryModels.hedittest/unit/pde/TCNE/TCNEChemistryModels_btest.cppsrc/pde/TCNE/TCNEChemistryModels.h3d3fae92a1a98eff39651af698877bf36d1c21691595891314000https://acdl.mit.edu/csi/user/ksaboksaboksabo@mit.edu150 char line error fix 2020-07-27 16:08:34 -07003d3fae92a1a98eff39651af698877bf36d1c2169150 char line error fixeditsrc/pde/TCNE/TCNEChemistryModels.hsrc/pde/TCNE/TCNEGasModel_CurveFit.hac9a858d194243ebb24758a477e2c759c1b2eb6f1595891411000https://acdl.mit.edu/csi/user/ksaboksaboksabo@mit.eduused brackets for matrix call, fixed now 2020-07-27 16:10:11 -0700ac9a858d194243ebb24758a477e2c759c1b2eb6fused brackets for matrix call, fixed noweditsrc/pde/TCNE/TCNEGasModel_CurveFit.hsrc/MPI/serialize_DenseLinAlg_MatrixD.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_Shur_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/ScalarVector.hsrc/LinearAlgebra/SparseLinAlg/SparseVector.hd921b8bcfe72701de6e261fb8058d19af9b1fe221595896115000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduSome cleanup of PETSc Shur solve 2020-07-27 20:28:35 -0400d921b8bcfe72701de6e261fb8058d19af9b1fe22Some cleanup of PETSc Shur solveaddsrc/MPI/serialize_DenseLinAlg_MatrixD.heditsrc/LinearAlgebra/SparseLinAlg/ScalarVector.heditsrc/LinearAlgebra/SparseLinAlg/SparseVector.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_Shur_Instantiate.cpptest/unit/LinearAlgebra/SparseLinAlg/MKL/MKL_PARDISO_btest.cppsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_CRS_MatrixD.cppsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_MatrixBlock_2x2_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_CRS_double.cpp20b4c9d15be914de11d494a3294c9826116f4d161595941536000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixes for MKL with Block 2x2 2020-07-28 09:05:36 -040020b4c9d15be914de11d494a3294c9826116f4d16Fixes for MKL with Block 2x2editsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_MatrixBlock_2x2_Instantiate.cppedittest/unit/LinearAlgebra/SparseLinAlg/MKL/MKL_PARDISO_btest.cppeditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_CRS_MatrixD.cppeditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_CRS_double.cppsrc/pde/ArtificialViscosity/PDEmitAVSensor3D.hsrc/pde/SourceOnly/PDESourceOnly3D.hsrc/pde/NS/BCEulermitAVSensor3D.htest/sandbox/Solve2D_VMSDBR2_HOW5_VI2_HTC_toy.cppsrc/SolutionTrek/Continuation/Homotopy/Homotopy.hsrc/pde/NS/PDEEulermitAVDiffusion3D.ha22005db5bf65c8b6233bcf3c3a7f4c13a38a89d1595997592000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduBug fixes for homotopy and some 3D bugs 2020-07-29 00:39:52 -0400a22005db5bf65c8b6233bcf3c3a7f4c13a38a89dBug fixes for homotopy and some 3D bugseditsrc/pde/NS/PDEEulermitAVDiffusion3D.heditsrc/pde/ArtificialViscosity/PDEmitAVSensor3D.heditsrc/SolutionTrek/Continuation/Homotopy/Homotopy.heditsrc/pde/SourceOnly/PDESourceOnly3D.heditsrc/pde/NS/BCEulermitAVSensor3D.hedittest/sandbox/Solve2D_VMSDBR2_HOW5_VI2_HTC_toy.cppsrc/pde/NS/PDEEuler2D.htest/system/CodeConsistency/PDESourceOnly_Projection_btest.cpp65038f4cd52cc832df28c576428ed135844f56c31596048176000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduFixed a few bug (undefined param and timeout) 2020-07-29 14:42:56 -040065038f4cd52cc832df28c576428ed135844f56c3Fixed a few bug (undefined param and timeout)edittest/system/CodeConsistency/PDESourceOnly_Projection_btest.cppeditsrc/pde/NS/PDEEuler2D.htest/unit/pde/TCNE/PDETCNEEuler1D_btest.cpptest/unit/pde/TCNE/TCNEGasModel_StatMech_btest.cppsrc/pde/TCNE/TCNEGasModel_StatMech.hCMakeLists.txt4b756e1c0e299decbd5c054ab60adff6a7429be01596061895000https://acdl.mit.edu/csi/user/ksaboksaboksabo@mit.edufixed stack-buffer-overflow error in temperature data structures 2020-07-29 15:31:35 -07004b756e1c0e299decbd5c054ab60adff6a7429be0fixed stack-buffer-overflow error in temperature data structuresedittest/unit/pde/TCNE/PDETCNEEuler1D_btest.cppeditCMakeLists.txteditsrc/pde/TCNE/TCNEGasModel_StatMech.hedittest/unit/pde/TCNE/TCNEGasModel_StatMech_btest.cpptest/sandbox/Solve3D_VMSDBR2_BlottnerSphere_AV_HTC_toy.cppsrc/pde/NS/BCEuler3D.cppsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_MatrixBlock_2x2_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_MatrixBlock_2x2_Instantiate.cppsrc/pde/NS/BCEuler3D_mitState.hsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2.ha950f402b21aea4d1af722f1f2bc052bcad04fd41596061916000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduMissing instantiations, BC that only existed for local testing purposes removed. 2020-07-29 18:31:56 -0400a950f402b21aea4d1af722f1f2bc052bcad04fd4Missing instantiations, BC that only existed for local testing purposes removed.edittest/sandbox/Solve3D_VMSDBR2_BlottnerSphere_AV_HTC_toy.cppeditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_MatrixBlock_2x2_Instantiate.cppeditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_MatrixBlock_2x2_Instantiate.cppeditsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2.heditsrc/pde/NS/BCEuler3D_mitState.heditsrc/pde/NS/BCEuler3D.cppsrc/pde/TCNE/TCNEChemistryModels.htest/unit/pde/TCNE/PDETCNEEuler1D_btest.cppsrc/pde/TCNE/TCNEGasModel_StatMech.h3b72656b3e4c5cd7c7b3a54fb4c2b17704d14fad1596063282000https://acdl.mit.edu/csi/user/ksaboksaboksabo@mit.edufixed read access error from electron indexing bug 2020-07-29 15:54:42 -07003b72656b3e4c5cd7c7b3a54fb4c2b17704d14fadfixed read access error from electron indexing bugeditsrc/pde/TCNE/TCNEGasModel_StatMech.heditsrc/pde/TCNE/TCNEChemistryModels.hedittest/unit/pde/TCNE/PDETCNEEuler1D_btest.cppsrc/pde/TCNE/PDETCNEEuler1D.hsrc/pde/TCNE/TCNEChemistryModels.ha957bb65213d808ead371dd8e57dbbe905f5f51b1596131017000https://acdl.mit.edu/csi/user/ksaboksaboksabo@mit.edufixed compiler warnings 2020-07-30 10:43:37 -0700a957bb65213d808ead371dd8e57dbbe905f5f51bfixed compiler warningseditsrc/pde/TCNE/PDETCNEEuler1D.heditsrc/pde/TCNE/TCNEChemistryModels.htest/unit/pde/TCNE/Q1DTCNEConservative_btest.cpptest/unit/pde/TCNE/BCTCNEEuler1D_btest.cpp15b7e43a259d3afabbb330cc884ac08de2d9adf81596140060000https://acdl.mit.edu/csi/user/ksaboksaboksabo@mit.edudropped tol to 1e-11 from 1e-12, removed extra {} that may have been causing an issue 2020-07-30 13:14:20 -070015b7e43a259d3afabbb330cc884ac08de2d9adf8dropped tol to 1e-11 from 1e-12, removed extra {} that may have been causing an issueedittest/unit/pde/TCNE/BCTCNEEuler1D_btest.cppedittest/unit/pde/TCNE/Q1DTCNEConservative_btest.cpptest/unit/pde/TCNE/BCTCNEEuler1D_btest.cpp47de569c019e0d3f3efad31c73f7f435a2e24bf31596150409000https://acdl.mit.edu/csi/user/ksaboksaboksabo@mit.edurenamed test suite (explicitly added TCNE to name) - was causing conflict error 2020-07-30 16:06:49 -070047de569c019e0d3f3efad31c73f7f435a2e24bf3renamed test suite (explicitly added TCNE to name) - was causing conflict erroredittest/unit/pde/TCNE/BCTCNEEuler1D_btest.cpptest/unit/pde/TCNE/Q1DTCNEConservative_btest.cpp8f3920d53e59b2eb35152aab893d8b6c58d59aaa1596214782000https://acdl.mit.edu/csi/user/ksaboksaboksabo@mit.eduSANS_Nightly fix, efma line compiler warning deleted 2020-07-31 09:59:42 -07008f3920d53e59b2eb35152aab893d8b6c58d59aaaSANS_Nightly fix, efma line compiler warning deletededittest/unit/pde/TCNE/Q1DTCNEConservative_btest.cppsrc/pde/TCNE/Q1DTCNEConservative.hsrc/pde/TCNE/TCNEChemistryModels.hsrc/pde/TCNE/TCNEGasModel_StatMech.hb288ad4b8e8d1f5af011a3cc8f3ddae441c32a3b1596836959000https://acdl.mit.edu/csi/user/ksaboksaboksabo@mit.eduupdated reverse reaction rate temperature calculations 2020-08-07 14:49:19 -0700b288ad4b8e8d1f5af011a3cc8f3ddae441c32a3bupdated reverse reaction rate temperature calculationseditsrc/pde/TCNE/TCNEGasModel_StatMech.heditsrc/pde/TCNE/TCNEChemistryModels.heditsrc/pde/TCNE/Q1DTCNEConservative.hsrc/Discretization/isValidState/isValidStateCell_VMSD.hdb5039d8da97fbebd096aaf05972d1a648af98f41597262000000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduAdd trace quadrature checking to isValidCell_VMSD. - VMSD is built around element-wise trace integrals, this adds checking for those quadrature points to the validity checking. 2020-08-12 15:53:20 -0400db5039d8da97fbebd096aaf05972d1a648af98f4Add trace quadrature checking to isValidCell_VMSD.editsrc/Discretization/isValidState/isValidStateCell_VMSD.hsrc/LinearAlgebra/AlgebraicEquationSetBase.hsrc/LinearAlgebra/SparseLinAlg/SparseLinAlg_Type.hsrc/LinearAlgebra/SparseLinAlg/tools/dot.htest/unit/LinearAlgebra/SparseLinAlg/VectorD_SparseVector_Real_btest.cppsrc/pde/AnalyticFunction/ScalarFunction2D.hsrc/LinearAlgebra/BlockLinAlg/tools/norm.hsrc/Adaptation/MOESS/NLOPT/MOESS_SANS_Optimizer_NLOPT/MOESS_SANS_Optimizer_NLOPT_impl.hsrc/Discretization/GloballyConstrained/AlgebraicEquationSet_GloballyConstrained.htest/unit/LinearAlgebra/SparseLinAlg/PETSc/PETSc_btest.cpptest/unit/LinearAlgebra/SparseLinAlg/VectorD_SparseVector_VectorS_btest.cppsrc/LinearAlgebra/VectorType.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_NoShur_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/LinearSolverBase.hsrc/LinearAlgebra/MatrixSizeType.htest/unit/Discretization/GloballyConstrained/AlgebraicEquationSet_GloballyConstrained_btest.cppsrc/LinearAlgebra/SparseLinAlg/SparseMatrix_CRS.hsrc/LinearAlgebra/AlgebraicEquationSetBase_GloballyConstrained.hsrc/LinearAlgebra/SparseLinAlg/ScalarMatrix_CRS_impl.hsrc/LinearAlgebra/DenseLinAlg/DynamicSize/VectorD.htest/unit/LinearAlgebra/SparseLinAlg/CMakeLists.txtsrc/SolutionTrek/Continuation/Homotopy/AlgebraicEquationSet_HTC2.hsrc/SolutionTrek/Continuation/Homotopy/PDEHomotopy.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_Instantiate.cppsrc/pde/AnalyticFunction/ScalarFunction2D.cppsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatrixD_NonZeroPattern.hsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion2D.hsrc/LinearAlgebra/SparseLinAlg/SparseLinAlg_LinearSolver.hsrc/LinearAlgebra/SparseLinAlg/SparseLinAlg_LinearSolver.cppsrc/LinearAlgebra/SparseLinAlg/CMakeLists.txtsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion2D.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixS_Instantiate.cppsrc/LinearAlgebra/VectorSizeType.htest/unit/LinearAlgebra/Heat1D_btest.hsrc/NonLinearSolver/NewtonSolver_MatrixBlock_2x2_Instantiate.cppsrc/SolutionTrek/Continuation/Homotopy/Homotopy.hsrc/LinearAlgebra/NonZeroPatternType.hsrc/NonLinearSolver/LineUpdate/HalvingSearchLineUpdate_MatrixBlock_2x2_Instantiate.cpp9957e2af90bca3063bc735cfeb74b6177b24fcf01597328150000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduRefactored global constraintes 2020-08-13 10:15:50 -04009957e2af90bca3063bc735cfeb74b6177b24fcf0Refactored global constrainteseditsrc/LinearAlgebra/SparseLinAlg/ScalarMatrix_CRS_impl.hedittest/unit/LinearAlgebra/SparseLinAlg/PETSc/PETSc_btest.cppeditsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatrixD_NonZeroPattern.heditsrc/pde/AnalyticFunction/ScalarFunction2D.heditsrc/LinearAlgebra/SparseLinAlg/SparseLinAlg_LinearSolver.haddsrc/LinearAlgebra/AlgebraicEquationSetBase_GloballyConstrained.heditsrc/LinearAlgebra/SparseLinAlg/SparseLinAlg_LinearSolver.cppeditsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion2D.hedittest/unit/Discretization/GloballyConstrained/AlgebraicEquationSet_GloballyConstrained_btest.cppeditsrc/SolutionTrek/Continuation/Homotopy/PDEHomotopy.heditsrc/LinearAlgebra/BlockLinAlg/tools/norm.heditsrc/LinearAlgebra/VectorType.heditsrc/LinearAlgebra/DenseLinAlg/DynamicSize/VectorD.hedittest/unit/LinearAlgebra/SparseLinAlg/CMakeLists.txteditsrc/LinearAlgebra/VectorSizeType.heditsrc/Adaptation/MOESS/NLOPT/MOESS_SANS_Optimizer_NLOPT/MOESS_SANS_Optimizer_NLOPT_impl.heditsrc/SolutionTrek/Continuation/Homotopy/AlgebraicEquationSet_HTC2.heditsrc/LinearAlgebra/SparseLinAlg/SparseLinAlg_Type.heditsrc/LinearAlgebra/MatrixSizeType.hdeletesrc/Discretization/GloballyConstrained/AlgebraicEquationSet_GloballyConstrained.hedittest/unit/LinearAlgebra/Heat1D_btest.heditsrc/LinearAlgebra/SparseLinAlg/CMakeLists.txteditsrc/LinearAlgebra/AlgebraicEquationSetBase.heditsrc/SolutionTrek/Continuation/Homotopy/Homotopy.heditsrc/pde/AnalyticFunction/ScalarFunction2D.cppeditsrc/LinearAlgebra/SparseLinAlg/LinearSolverBase.heditsrc/NonLinearSolver/LineUpdate/HalvingSearchLineUpdate_MatrixBlock_2x2_Instantiate.cppeditsrc/NonLinearSolver/NewtonSolver_MatrixBlock_2x2_Instantiate.cppeditsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion2D.hedittest/unit/LinearAlgebra/SparseLinAlg/VectorD_SparseVector_Real_btest.cppeditsrc/LinearAlgebra/NonZeroPatternType.haddsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_Instantiate.cppdeletesrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_NoShur_Instantiate.cppeditsrc/LinearAlgebra/SparseLinAlg/SparseMatrix_CRS.heditsrc/LinearAlgebra/SparseLinAlg/tools/dot.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixS_Instantiate.cppedittest/unit/LinearAlgebra/SparseLinAlg/VectorD_SparseVector_VectorS_btest.cppsrc/LinearAlgebra/SparseLinAlg/tools/MPI_dot.cppsrc/LinearAlgebra/SparseLinAlg/tools/MPI_dot.htest/unit/LinearAlgebra/SparseLinAlg/PETSc/PETSc_LinearSolver_btest.cpp43e8a8ef02475daec41ade2fdefb54f4331d10011597328213000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduForgot files 2020-08-13 10:16:53 -040043e8a8ef02475daec41ade2fdefb54f4331d1001Forgot filesaddsrc/LinearAlgebra/SparseLinAlg/tools/MPI_dot.haddsrc/LinearAlgebra/SparseLinAlg/tools/MPI_dot.cppaddtest/unit/LinearAlgebra/SparseLinAlg/PETSc/PETSc_LinearSolver_btest.cpptest/unit/Discretization/HDG/IntegrandFunctor_HDG_ST_AD_btest.cppsrc/pde/NS/BCEulermitAVSensor3D.htest/unit/Discretization/HDG/IntegrandCell_HDG_AD_btest.cppsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion2D.htest/unit/Discretization/VMSD/IntegrandCell_VMSD_Output_AD_btest.cpptest/unit/Discretization/HDG/IntegrandInteriorTrace_HDG_AD_btest.cpptest/unit/pde/SourceOnly/PDESourceOnly2D_btest.cppsrc/SolutionTrek/Continuation/Homotopy/Homotopy.htest/unit/Discretization/VMSDBR2/IntegrandTrace_VMSD_BR2_AD_btest.cpp0242292499ef7d7bfadcfba6cd8ae2af56b9d2a21597339808000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduCompile fixes 2020-08-13 13:30:08 -04000242292499ef7d7bfadcfba6cd8ae2af56b9d2a2Compile fixesedittest/unit/pde/SourceOnly/PDESourceOnly2D_btest.cppeditsrc/SolutionTrek/Continuation/Homotopy/Homotopy.heditsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion2D.hedittest/unit/Discretization/HDG/IntegrandFunctor_HDG_ST_AD_btest.cppedittest/unit/Discretization/HDG/IntegrandInteriorTrace_HDG_AD_btest.cppedittest/unit/Discretization/HDG/IntegrandCell_HDG_AD_btest.cppeditsrc/pde/NS/BCEulermitAVSensor3D.hedittest/unit/Discretization/VMSD/IntegrandCell_VMSD_Output_AD_btest.cppedittest/unit/Discretization/VMSDBR2/IntegrandTrace_VMSD_BR2_AD_btest.cpptest/unit/IO/pde/ScalarFunction2D_pattern.txtsrc/pde/AnalyticFunction/ScalarFunction2D.hb1190203750f157d3f224931f58c5208431bc4db1597342238000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix unit test 2020-08-13 14:10:38 -0400b1190203750f157d3f224931f58c5208431bc4dbFix unit testeditsrc/pde/AnalyticFunction/ScalarFunction2D.hedittest/unit/IO/pde/ScalarFunction2D_pattern.txtsrc/Adaptation/MOESS/ParamFieldBuilder.htest/unit/Adaptation/MOESS/ParamFieldBuilder_btest.cppsrc/pde/PorousMedia/PermeabilityModel2D.hsrc/pde/PorousMedia/PorosityModel.hsrc/Discretization/DG/SolutionData_DGBR2.htest/unit/Adaptation/MOESS/CMakeLists.txta4c4e8e685b01cc96a199e59d58c958ee7182d4a1597596599000https://acdl.mit.edu/csi/user/savithrusavithrusavithru@mit.eduAdded a new ParamFieldBuilder specialization for (log-permeability, porosity, gen-H) param fields. Added a unit test. 2020-08-16 12:49:59 -0400a4c4e8e685b01cc96a199e59d58c958ee7182d4aAdded a new ParamFieldBuilder specialization for (log-permeability, porosity, gen-H) param fields. Added a unit test.edittest/unit/Adaptation/MOESS/ParamFieldBuilder_btest.cppedittest/unit/Adaptation/MOESS/CMakeLists.txteditsrc/pde/PorousMedia/PermeabilityModel2D.heditsrc/pde/PorousMedia/PorosityModel.heditsrc/Adaptation/MOESS/ParamFieldBuilder.heditsrc/Discretization/DG/SolutionData_DGBR2.hsrc/pde/CMakeLists.txtCMakeLists.txttest/unit/pde/CMakeLists.txt95a115d9350792ae366aa549c3b441b446263ff71597693713000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduadded pde/IncompressibleNS 2020-08-17 12:48:33 -070095a115d9350792ae366aa549c3b441b446263ff7added pde/IncompressibleNSeditCMakeLists.txtedittest/unit/pde/CMakeLists.txteditsrc/pde/CMakeLists.txtsrc/pde/IncompressibleNS/PDEIncompressibleNavierStokes1DChannel.htest/unit/pde/IncompressibleNS/PDEIncompressibleNavierStokes1DChannel_btest.cpptest/unit/IO/pde/PDEIncompressibleNavierStokes1DChannel_pattern.txtsrc/pde/IncompressibleNS/CMakeLists.txtsrc/pde/IncompressibleNS/TraitsIncompressibleNavierStokes.hsrc/pde/IncompressibleNS/BCIncompressibleNavierStokes1DChannel.cppsrc/Discretization/Galerkin/IntegrandBoundaryTrace_Robin_sansLG_Galerkin.htest/unit/pde/IncompressibleNS/CMakeLists.txtsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin.hsrc/pde/IncompressibleNS/BCIncompressibleNavierStokes1DChannel.hsrc/pde/IncompressibleNS/TraitsIncompressibleNavierStokesChannel.h172ce73cf210570ec61f5d3172f30957c3ebfa301597694189000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduadded 1D incompressible NS for fully developed channel flow with sansLG Robin BCs 2020-08-17 12:56:29 -0700172ce73cf210570ec61f5d3172f30957c3ebfa30added 1D incompressible NS for fully developed channel flow with sansLG Robin BCseditsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin.haddsrc/pde/IncompressibleNS/BCIncompressibleNavierStokes1DChannel.cppaddsrc/pde/IncompressibleNS/TraitsIncompressibleNavierStokes.haddtest/unit/IO/pde/PDEIncompressibleNavierStokes1DChannel_pattern.txtaddtest/unit/pde/IncompressibleNS/CMakeLists.txtaddsrc/pde/IncompressibleNS/BCIncompressibleNavierStokes1DChannel.haddsrc/pde/IncompressibleNS/PDEIncompressibleNavierStokes1DChannel.haddsrc/pde/IncompressibleNS/CMakeLists.txteditsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized.haddsrc/pde/IncompressibleNS/TraitsIncompressibleNavierStokesChannel.haddsrc/Discretization/Galerkin/IntegrandBoundaryTrace_Robin_sansLG_Galerkin.haddtest/unit/pde/IncompressibleNS/PDEIncompressibleNavierStokes1DChannel_btest.cppsrc/Discretization/Galerkin/IntegrandBoundaryTrace_Dirichlet_sansLG_Galerkin.hsrc/pde/ShallowWater/BCShallowWater2D_manifold.htest/unit/pde/ShallowWater/BCShallowWater1D_btest.cppsrc/pde/NS/BCEuler1D.hsrc/pde/NDConvert/BCNDConvertSpace1D.htest/unit/pde/NS/BCEuler3D_mitLagrange_btest.cpptest/unit/pde/NS/BCEuler2D_btest.cppsrc/Discretization/HDG/IntegrandBoundaryTrace_Dirichlet_sansLG_HDG.hsrc/pde/NDConvert/BCNDConvertSpace2D.htest/unit/pde/NS/BCEuler1D_btest.cpptest/unit/pde/ShallowWater/BCShallowWater2D_manifold_btest.cppsrc/Discretization/Galerkin/IntegrandBoundaryTrace_Dirichlet_sansLG_Galerkin_manifold.hsrc/pde/NDConvert/BCNDConvertSpaceTime2D.hsrc/Discretization/Galerkin/IntegrandBoundaryTrace_Dirichlet_Galerkin_HSM2D.hsrc/pde/NDConvert/BCNDConvertSpaceTime1D.htest/unit/pde/ShallowWater/BCShallowWater2D_btest.cppsrc/pde/ShallowWater/BCShallowWater1D.hsrc/pde/ShallowWater/BCShallowWater2D.htest/unit/pde/HSM/BCHSM2D_btest.cppsrc/pde/NS/BCEuler2D_Dirichlet_sansLG.h28291bc064561403c959442260687b0f2755ee341597765585000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduadded 2nd weighting parameter to weightBC; 1st parameter is for Dirichlet / adjoint state, and 2nd parameter is for Neumann / adjoint diffusive flux 2020-08-18 08:46:25 -070028291bc064561403c959442260687b0f2755ee34added 2nd weighting parameter to weightBC; 1st parameter is for Dirichlet / adjoint state,edittest/unit/pde/NS/BCEuler1D_btest.cppeditsrc/Discretization/Galerkin/IntegrandBoundaryTrace_Dirichlet_Galerkin_HSM2D.heditsrc/pde/NDConvert/BCNDConvertSpace1D.heditsrc/pde/NS/BCEuler1D.heditsrc/pde/NDConvert/BCNDConvertSpaceTime1D.hedittest/unit/pde/ShallowWater/BCShallowWater2D_btest.cppeditsrc/pde/ShallowWater/BCShallowWater1D.hedittest/unit/pde/NS/BCEuler2D_btest.cppeditsrc/pde/ShallowWater/BCShallowWater2D_manifold.hedittest/unit/pde/ShallowWater/BCShallowWater1D_btest.cppeditsrc/Discretization/Galerkin/IntegrandBoundaryTrace_Dirichlet_sansLG_Galerkin_manifold.hedittest/unit/pde/HSM/BCHSM2D_btest.cppedittest/unit/pde/NS/BCEuler3D_mitLagrange_btest.cppeditsrc/pde/NDConvert/BCNDConvertSpaceTime2D.heditsrc/pde/NS/BCEuler2D_Dirichlet_sansLG.heditsrc/Discretization/Galerkin/IntegrandBoundaryTrace_Dirichlet_sansLG_Galerkin.heditsrc/pde/ShallowWater/BCShallowWater2D.hedittest/unit/pde/ShallowWater/BCShallowWater2D_manifold_btest.cppeditsrc/Discretization/HDG/IntegrandBoundaryTrace_Dirichlet_sansLG_HDG.heditsrc/pde/NDConvert/BCNDConvertSpace2D.hsrc/pde/HSM/BCHSM2D.hc6efe631d86ca01b0e2de78eab4ea69ed0ff69271597765677000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduadded 2nd weighting parameter to weightBC; missed one file 2020-08-18 08:47:57 -0700c6efe631d86ca01b0e2de78eab4ea69ed0ff6927added 2nd weighting parameter to weightBC; missed one fileeditsrc/pde/HSM/BCHSM2D.hsrc/pde/BCCategory.hsrc/Discretization/DiscretizationBCTag.h1179d4b3e94b485c7ac18ca5c406168009d843bf1597765906000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduadded Robin_sansLG BC catagory 2020-08-18 08:51:46 -07001179d4b3e94b485c7ac18ca5c406168009d843bfadded Robin_sansLG BC catagoryeditsrc/pde/BCCategory.heditsrc/Discretization/DiscretizationBCTag.htest/unit/pde/IncompressibleNS/PDEIncompressibleNavierStokes1DChannel_btest.cpp3810f8436226bb559500daa725f58dae3ee2550f1597765982000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduIO file check flag -> true 2020-08-18 08:53:02 -07003810f8436226bb559500daa725f58dae3ee2550fIO file check flag -> trueedittest/unit/pde/IncompressibleNS/PDEIncompressibleNavierStokes1DChannel_btest.cpptest/sandbox/Solve1D_CG_IncNS1D_Channel_toy.cppff051a2d9b7ef9f3c0796dfc9745766ca48857181597821606000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.edu1D incompressible NS solver for fully developed channel flow 2020-08-19 00:20:06 -0700ff051a2d9b7ef9f3c0796dfc9745766ca48857181D incompressible NS solver for fully developed channel flowaddtest/sandbox/Solve1D_CG_IncNS1D_Channel_toy.cppsrc/pde/IncompressibleNS/PDEIncompressibleNavierStokes1DChannel.htest/unit/pde/IncompressibleNS/PDEIncompressibleNavierStokes1DChannel_btest.cppsrc/pde/IncompressibleNS/BCIncompressibleNavierStokes1DChannel.hsrc/pde/IncompressibleNS/BCIncompressibleNavierStokes1DChannel.cpp72af8eb02ec2b5f65ee64cb19ab53d13f53ee96f1597821700000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.edubug fixes 2020-08-19 00:21:40 -070072af8eb02ec2b5f65ee64cb19ab53d13f53ee96fbug fixeseditsrc/pde/IncompressibleNS/BCIncompressibleNavierStokes1DChannel.heditsrc/pde/IncompressibleNS/PDEIncompressibleNavierStokes1DChannel.hedittest/unit/pde/IncompressibleNS/PDEIncompressibleNavierStokes1DChannel_btest.cppeditsrc/pde/IncompressibleNS/BCIncompressibleNavierStokes1DChannel.cpptest/unit/pde/PorousMedia/BCTwoPhaseArtificialViscosity2D_btest.cppsrc/pde/PorousMedia/BCTwoPhaseArtificialViscosity2D.cppsrc/pde/PorousMedia/PorosityModel.cpptest/unit/pde/PorousMedia/OutputTwoPhase_btest.cppsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_TwoPhase2D_LogpnSw.cpptest/unit/IO/pde/PorousMedia/PDETwoPhase_ArtificialViscosity2D_pattern.txtsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_ArtificialViscosity_TwoPhase2D_LogpnSw.cppsrc/pde/ArtificialViscosity/AVSensor_ViscousFlux2D.hsrc/Discretization/CMakeLists.txttest/unit/pde/PorousMedia/BCTwoPhase2D_btest.cpptest/system/Asymptotic/CMakeLists.txttest/unit/Discretization/DG/CMakeLists.txtsrc/pde/PorousMedia/PDETwoPhase2D.htest/unit/pde/PorousMedia/PDETwoPhase_ArtificialViscosity2D_btest.cpptest/unit/pde/PorousMedia/BCTwoPhaseArtificialViscosity1D_btest.cppsrc/pde/PorousMedia/TraitsTwoPhase.htest/unit/Adaptation/MOESS/ParamFieldBuilder_btest.cpptest/unit/IO/pde/PorousMedia/PDETwoPhase2D_pattern.txtsrc/pde/PorousMedia/BCTwoPhase2D.htest/unit/pde/PorousMedia/PDETwoPhase_ArtificialViscosity1D_btest.cppsrc/pde/PorousMedia/SourceTwoPhase2D.hsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_TwoPhase1D.cpptest/unit/IO/pde/PorousMedia/PDETwoPhase1D_pattern.txttest/unit/Discretization/GloballyConstrained/CMakeLists.txtsrc/pde/PorousMedia/PermeabilityModel2D.hsrc/pde/PorousMedia/PDETwoPhase1D.hsrc/pde/PorousMedia/BCTwoPhaseArtificialViscosity2D.hsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_TwoPhase2D_Surrogate_pnSw.cppsrc/pde/PorousMedia/PDETwoPhase_ArtificialViscosity2D.htest/unit/pde/PorousMedia/PDETwoPhase1D_btest.cpptest/unit/pde/PorousMedia/Sensor_TwoPhase_btest.cppsrc/pde/PorousMedia/BCTwoPhase2D.cpptest/unit/pde/PorousMedia/SourceTwoPhase2D_btest.cppsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_ArtificialViscosity_TwoPhase2D.cpptest/unit/IO/pde/PorousMedia/PDETwoPhase_ArtificialViscosity1D_pattern.txttest/unit/pde/PorousMedia/PDETwoPhase2D_btest.cpptest/unit/Discretization/Block/CMakeLists.txttest/unit/IO/pde/PorousMedia/BCTwoPhase1D_pattern.txttest/unit/IO/pde/PorousMedia/BCTwoPhase2D_pattern.txtsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_TwoPhase2D.cppsrc/pde/PorousMedia/BCTwoPhaseArtificialViscosity1D.cpptest/unit/pde/PorousMedia/BCTwoPhase1D_btest.cppsrc/pde/ArtificialViscosity/PDEmitAVSensor2D.hsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_ArtificialViscosity_TwoPhase1D.cpptest/unit/IO/pde/PorousMedia/PorosityModel_Comp_pattern.txtsrc/pde/PorousMedia/BCTwoPhase1D.cpptest/unit/pde/PorousMedia/PorosityModel_btest.cppsrc/pde/PorousMedia/PorosityModel.hsrc/pde/PorousMedia/OutputTwoPhase.hbd52fca2b440b94b7683954fb0049a342d0a74a51597872158000https://acdl.mit.edu/csi/user/savithrusavithrusavithru@mit.eduMajor refactor of the two-phase PDE classes to support a (log-permeability, porosity) param-field. The artificial viscosity classes use a (log-permeability, porosity, log-H) param-field. 2020-08-19 17:22:38 -0400bd52fca2b440b94b7683954fb0049a342d0a74a5Major refactor of the two-phase PDE classes to support a (log-permeability, porosity) param-field. The artificial viscosity classes use a (log-permeability, porosity, log-H) param-field.edittest/unit/Adaptation/MOESS/ParamFieldBuilder_btest.cppedittest/unit/pde/PorousMedia/SourceTwoPhase2D_btest.cppedittest/unit/pde/PorousMedia/BCTwoPhaseArtificialViscosity2D_btest.cppeditsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_TwoPhase2D_Surrogate_pnSw.cppedittest/unit/pde/PorousMedia/BCTwoPhase2D_btest.cppeditsrc/Discretization/CMakeLists.txtedittest/unit/pde/PorousMedia/BCTwoPhase1D_btest.cppeditsrc/pde/PorousMedia/PorosityModel.cppeditsrc/pde/PorousMedia/SourceTwoPhase2D.hedittest/unit/Discretization/Block/CMakeLists.txteditsrc/pde/PorousMedia/BCTwoPhase2D.heditsrc/pde/PorousMedia/TraitsTwoPhase.heditsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_TwoPhase1D.cppeditsrc/pde/PorousMedia/OutputTwoPhase.hedittest/unit/pde/PorousMedia/PorosityModel_btest.cppedittest/unit/pde/PorousMedia/Sensor_TwoPhase_btest.cppeditsrc/pde/PorousMedia/BCTwoPhase2D.cppeditsrc/pde/ArtificialViscosity/PDEmitAVSensor2D.heditsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_ArtificialViscosity_TwoPhase2D_LogpnSw.cppeditsrc/pde/PorousMedia/PDETwoPhase2D.heditsrc/pde/PorousMedia/PermeabilityModel2D.hedittest/system/Asymptotic/CMakeLists.txteditsrc/pde/ArtificialViscosity/AVSensor_ViscousFlux2D.hedittest/unit/pde/PorousMedia/BCTwoPhaseArtificialViscosity1D_btest.cppedittest/unit/pde/PorousMedia/PDETwoPhase_ArtificialViscosity2D_btest.cppeditsrc/pde/PorousMedia/PDETwoPhase_ArtificialViscosity2D.hedittest/unit/IO/pde/PorousMedia/PDETwoPhase1D_pattern.txtedittest/unit/IO/pde/PorousMedia/PDETwoPhase_ArtificialViscosity1D_pattern.txtedittest/unit/IO/pde/PorousMedia/PDETwoPhase2D_pattern.txteditsrc/pde/PorousMedia/BCTwoPhaseArtificialViscosity2D.cppeditsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_ArtificialViscosity_TwoPhase2D.cppedittest/unit/IO/pde/PorousMedia/BCTwoPhase1D_pattern.txtedittest/unit/Discretization/GloballyConstrained/CMakeLists.txteditsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_TwoPhase2D.cppeditsrc/pde/PorousMedia/BCTwoPhaseArtificialViscosity2D.hedittest/unit/pde/PorousMedia/OutputTwoPhase_btest.cppedittest/unit/pde/PorousMedia/PDETwoPhase_ArtificialViscosity1D_btest.cppeditsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_TwoPhase2D_LogpnSw.cppedittest/unit/IO/pde/PorousMedia/PDETwoPhase_ArtificialViscosity2D_pattern.txtedittest/unit/pde/PorousMedia/PDETwoPhase2D_btest.cppeditsrc/pde/PorousMedia/PDETwoPhase1D.heditsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_ArtificialViscosity_TwoPhase1D.cppedittest/unit/IO/pde/PorousMedia/BCTwoPhase2D_pattern.txteditsrc/pde/PorousMedia/BCTwoPhaseArtificialViscosity1D.cppeditsrc/pde/PorousMedia/BCTwoPhase1D.cppedittest/unit/pde/PorousMedia/PDETwoPhase1D_btest.cppedittest/unit/Discretization/DG/CMakeLists.txtedittest/unit/IO/pde/PorousMedia/PorosityModel_Comp_pattern.txteditsrc/pde/PorousMedia/PorosityModel.hsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_ArtificialViscosity_TwoPhase2D_LogpnSw.cppsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_ArtificialViscosity_TwoPhase2D.cppsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_ArtificialViscosity_TwoPhase1D.cppsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_TwoPhase2D.cppsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_TwoPhase2D_Surrogate_pnSw.cppCMakeLists.txtsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_TwoPhase2D_LogpnSw.cppsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_TwoPhase1D.cppd4eb1d7663e24fff56f42db9a273096091bd9b511597877131000https://acdl.mit.edu/csi/user/savithrusavithrusavithru@mit.eduUpdated ErrorEstimate_DGBR2 instantiations 2020-08-19 18:45:31 -0400d4eb1d7663e24fff56f42db9a273096091bd9b51Updated ErrorEstimate_DGBR2 instantiationseditsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_ArtificialViscosity_TwoPhase2D.cppeditsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_ArtificialViscosity_TwoPhase1D.cppeditCMakeLists.txteditsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_TwoPhase2D_LogpnSw.cppeditsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_TwoPhase1D.cppeditsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_TwoPhase2D.cppeditsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_ArtificialViscosity_TwoPhase2D_LogpnSw.cppeditsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_TwoPhase2D_Surrogate_pnSw.cpptest/unit/ErrorEstimate/ErrorEstimateCell_DGBR2_LiftedQuantity_TwoPhaseAV_btest.cpptest/unit/Discretization/DG/JacobianCell_DGBR2_LiftedQuantity_TwoPhaseAV_btest.cpptest/unit/Discretization/DG/JacobianCell_DGBR2_TwoPhase_btest.cpptest/unit/Discretization/Galerkin/JacobianFunctionalCell_Galerkin_btest.cpptest/unit/Discretization/DG/JacobianCell_DGBR2_LiftingOperator_LiftedQuantity_TwoPhaseAV_btest.cpptest/unit/Discretization/DG/JacobianFunctionalCell_DGBR2_btest.cppsrc/pde/PorousMedia/PermeabilityModel2D.htest/unit/pde/ArtificialViscosity/AVSensor_Source1D_btest.cpptest/unit/Discretization/DG/SetFieldInteriorTrace_DGBR2_LiftedQuantity_TwoPhaseAV_btest.cpptest/unit/Discretization/DG/JacobianInteriorTrace_DGBR2_TwoPhase_btest.cpptest/unit/Discretization/DG/ResidualCell_DGBR2_LiftedQuantity_TwoPhaseAV_btest.cpptest/unit/Discretization/DG/JacobianBoundaryTrace_Dirichlet_mitState_DGBR2_TwoPhase_btest.cpptest/system/Asymptotic/ErrorOrder_1D_DGBR2_TwoPhase_ST_btest.cpptest/unit/pde/ArtificialViscosity/AVSensor_Source2D_TwoPhase_btest.cppb23402e3a6b80ba3ec3959c698dd6dd4ea86ce1a1597897989000https://acdl.mit.edu/csi/user/savithrusavithrusavithru@mit.eduUpdated tests. All unit and system tests compile now. 2020-08-20 00:33:09 -0400b23402e3a6b80ba3ec3959c698dd6dd4ea86ce1aUpdated tests. All unit and system tests compile now.edittest/unit/Discretization/DG/JacobianFunctionalCell_DGBR2_btest.cppedittest/unit/ErrorEstimate/ErrorEstimateCell_DGBR2_LiftedQuantity_TwoPhaseAV_btest.cppedittest/unit/pde/ArtificialViscosity/AVSensor_Source1D_btest.cppedittest/unit/Discretization/DG/JacobianCell_DGBR2_LiftedQuantity_TwoPhaseAV_btest.cppedittest/system/Asymptotic/ErrorOrder_1D_DGBR2_TwoPhase_ST_btest.cppedittest/unit/pde/ArtificialViscosity/AVSensor_Source2D_TwoPhase_btest.cppedittest/unit/Discretization/Galerkin/JacobianFunctionalCell_Galerkin_btest.cppedittest/unit/Discretization/DG/JacobianInteriorTrace_DGBR2_TwoPhase_btest.cppedittest/unit/Discretization/DG/JacobianCell_DGBR2_TwoPhase_btest.cppeditsrc/pde/PorousMedia/PermeabilityModel2D.hedittest/unit/Discretization/DG/ResidualCell_DGBR2_LiftedQuantity_TwoPhaseAV_btest.cppedittest/unit/Discretization/DG/JacobianCell_DGBR2_LiftingOperator_LiftedQuantity_TwoPhaseAV_btest.cppedittest/unit/Discretization/DG/SetFieldInteriorTrace_DGBR2_LiftedQuantity_TwoPhaseAV_btest.cppedittest/unit/Discretization/DG/JacobianBoundaryTrace_Dirichlet_mitState_DGBR2_TwoPhase_btest.cpptest/unit/LinearAlgebra/DenseLinAlg/MatrixS_btest.cpp1254196d8de8434f038765a933d34d26e4acd95b1597942495000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduadded test for -Identity() initializer 2020-08-20 09:54:55 -07001254196d8de8434f038765a933d34d26e4acd95badded test for -Identity() initializeredittest/unit/LinearAlgebra/DenseLinAlg/MatrixS_btest.cpptest/unit/LinearAlgebra/DenseLinAlg/MatrixS_btest.cppsrc/LinearAlgebra/DenseLinAlg/tools/Identity.hcf685edeb7e96696e757d04f818bd86cdf9fe96e1597946834000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix so -DLA::Identity() works properly 2020-08-20 14:07:14 -0400cf685edeb7e96696e757d04f818bd86cdf9fe96eFix so -DLA::Identity() works properlyedittest/unit/LinearAlgebra/DenseLinAlg/MatrixS_btest.cppeditsrc/LinearAlgebra/DenseLinAlg/tools/Identity.hsrc/pde/IncompressibleNS/PDEIncompressibleRANSSA1DChannel.hsrc/pde/IncompressibleNS/BCIncompressibleRANSSA1DChannel.cppsrc/pde/IncompressibleNS/CMakeLists.txtsrc/pde/IncompressibleNS/TraitsIncompressibleRANSSAChannel.hsrc/pde/IncompressibleNS/BCIncompressibleNavierStokes1DChannel.cppsrc/pde/IncompressibleNS/BCIncompressibleNavierStokes1DChannel.hsrc/pde/IncompressibleNS/BCIncompressibleRANSSA1DChannel.ha921b3ae3f94161ffcc8884de5887d3fc880900f1597963848000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduadded BCs for 1D RANS-SA for channel flow 2020-08-20 15:50:48 -0700a921b3ae3f94161ffcc8884de5887d3fc880900fadded BCs for 1D RANS-SA for channel floweditsrc/pde/IncompressibleNS/BCIncompressibleNavierStokes1DChannel.haddsrc/pde/IncompressibleNS/TraitsIncompressibleRANSSAChannel.haddsrc/pde/IncompressibleNS/BCIncompressibleRANSSA1DChannel.haddsrc/pde/IncompressibleNS/PDEIncompressibleRANSSA1DChannel.haddsrc/pde/IncompressibleNS/BCIncompressibleRANSSA1DChannel.cppeditsrc/pde/IncompressibleNS/CMakeLists.txteditsrc/pde/IncompressibleNS/BCIncompressibleNavierStokes1DChannel.cpptest/unit/pde/IncompressibleNS/PDEIncompressibleRANS1DChannel.nbtest/unit/pde/IncompressibleNS/PDEIncompressibleRANSSA1DChannel_btest.cpptest/unit/pde/IncompressibleNS/BCIncompressibleRANSSA1DChannel_btest.cpptest/unit/pde/IncompressibleNS/BCIncompressibleNavierStokes1DChannel_btest.cppe203742ba96e2e93f04a3517267e38948db6d7ae1597963924000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduunit tests for 1D RANS-SA for channel flow 2020-08-20 15:52:04 -0700e203742ba96e2e93f04a3517267e38948db6d7aeunit tests for 1D RANS-SA for channel flowaddtest/unit/pde/IncompressibleNS/PDEIncompressibleRANS1DChannel.nbaddtest/unit/pde/IncompressibleNS/BCIncompressibleNavierStokes1DChannel_btest.cppaddtest/unit/pde/IncompressibleNS/PDEIncompressibleRANSSA1DChannel_btest.cppaddtest/unit/pde/IncompressibleNS/BCIncompressibleRANSSA1DChannel_btest.cpptest/unit/pde/IncompressibleNS/PDEIncompressibleRANSSA1DChannel_btest.cpp52df15f8203158eb0a2c37145bd6768811bc24f11597963976000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduunit tests: missed one 2020-08-20 15:52:56 -070052df15f8203158eb0a2c37145bd6768811bc24f1unit tests: missed oneedittest/unit/pde/IncompressibleNS/PDEIncompressibleRANSSA1DChannel_btest.cpptest/unit/IO/pde/BCIncompressibleRANSSA1DChannel_pattern.txttest/unit/IO/pde/BCIncompressibleNavierStokes1DChannel_pattern.txt644385213bcdcab806bffc36ceabbde2fd8d4d251597964005000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduunit test output pattern test files 2020-08-20 15:53:25 -0700644385213bcdcab806bffc36ceabbde2fd8d4d25unit test output pattern test filesaddtest/unit/IO/pde/BCIncompressibleRANSSA1DChannel_pattern.txtaddtest/unit/IO/pde/BCIncompressibleNavierStokes1DChannel_pattern.txttest/sandbox/Solve1D_CG_IncRANSSA1D_Channel_toy.cpp099475c10a01fe8393944c749de2642ecb63fe8d1597964078000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.edu1D RANS-SA test case for fully developed channel flow -- preliminary 2020-08-20 15:54:38 -0700099475c10a01fe8393944c749de2642ecb63fe8d1D RANS-SA test case for fully developed channel flow -- preliminaryaddtest/sandbox/Solve1D_CG_IncRANSSA1D_Channel_toy.cpptest/sandbox/Solve1D_CG_IncRANSSA1D_Channel_toy.cppd8a019f31cd104b6c344d47a293e7d034418b0781597964568000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduupdated test case 2020-08-20 16:02:48 -0700d8a019f31cd104b6c344d47a293e7d034418b078updated test caseedittest/sandbox/Solve1D_CG_IncRANSSA1D_Channel_toy.cpptest/sandbox/Solve2D_DGBR2_TwoPhase_ArtificialViscosity_QuarterFiveSpot_BDF_toy.cpptest/sandbox/Adapt2D_DGBR2_TwoPhase_Steady_QuarterFiveSpot_toy.cpptest/sandbox/Adapt3D_DGBR2_TwoPhase_ST_toy.cppsrc/pde/PorousMedia/PermeabilityModel2D.htest/sandbox/Adapt2D_DGBR2_TwoPhase_Steady_Tilt_toy.cpptest/sandbox/Solve2D_DGBR2_TwoPhase_QuarterFiveSpot_BDF_toy.cppsrc/Adaptation/MOESS/SolverInterface_DGBR2.hsrc/pde/PorousMedia/CartTable.cppsrc/Discretization/DG/SolutionData_DGBR2.htest/sandbox/Adapt3D_DGBR2_TwoPhase_ArtificialViscosity_ST_QuarterFiveSpot_toy.cppsrc/Adaptation/MOESS/ParamFieldBuilder.htest/sandbox/Adapt3D_DGBR2_TwoPhase_ST_QuarterFiveSpot_toy.cppsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_ArtificialViscosity_TwoPhase2D_LogpnSw.cppsrc/pde/PorousMedia/CartTable.htest/unit/Adaptation/MOESS/ParamFieldBuilder_btest.cpptest/sandbox/Adapt2D_DGBR2_TwoPhase_ST_toy.cpptest/sandbox/Adapt3D_DGBR2_TwoPhase_ArtificialViscosity_ST_SPE10_toy.cppsrc/pde/PorousMedia/BCTwoPhase2D.cppsrc/pde/PorousMedia/SourceTwoPhase2D.hsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_ArtificialViscosity_TwoPhase2D.cppsrc/pde/PorousMedia/PorosityModel.hsrc/pde/PorousMedia/OutputTwoPhase.htest/sandbox/Adapt2D_DGBR2_TwoPhase_ArtificialViscosity_ST_toy.cpptest/sandbox/Adapt2D_DGBR2_TwoPhase_ST_Symmetric_toy.cpp357b85a52c944e30a158696e034222aac537a6181597986517000https://acdl.mit.edu/csi/user/savithrusavithrusavithru@mit.eduMore refactoring to get sandbox cases to compile. 2020-08-21 01:08:37 -0400357b85a52c944e30a158696e034222aac537a618More refactoring to get sandbox cases to compile.editsrc/pde/PorousMedia/PermeabilityModel2D.heditsrc/Adaptation/MOESS/ParamFieldBuilder.heditsrc/Adaptation/MOESS/SolverInterface_DGBR2.heditsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_ArtificialViscosity_TwoPhase2D_LogpnSw.cppeditsrc/pde/PorousMedia/SourceTwoPhase2D.hedittest/sandbox/Adapt3D_DGBR2_TwoPhase_ST_toy.cppeditsrc/pde/PorousMedia/BCTwoPhase2D.cppeditsrc/pde/PorousMedia/CartTable.hedittest/sandbox/Adapt3D_DGBR2_TwoPhase_ArtificialViscosity_ST_SPE10_toy.cppedittest/unit/Adaptation/MOESS/ParamFieldBuilder_btest.cppeditsrc/pde/PorousMedia/OutputTwoPhase.hedittest/sandbox/Adapt3D_DGBR2_TwoPhase_ST_QuarterFiveSpot_toy.cppedittest/sandbox/Solve2D_DGBR2_TwoPhase_ArtificialViscosity_QuarterFiveSpot_BDF_toy.cppeditsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_ArtificialViscosity_TwoPhase2D.cppedittest/sandbox/Adapt2D_DGBR2_TwoPhase_ST_toy.cppedittest/sandbox/Adapt2D_DGBR2_TwoPhase_ArtificialViscosity_ST_toy.cppdeletetest/sandbox/Adapt2D_DGBR2_TwoPhase_Steady_Tilt_toy.cppeditsrc/Discretization/DG/SolutionData_DGBR2.hedittest/sandbox/Solve2D_DGBR2_TwoPhase_QuarterFiveSpot_BDF_toy.cppeditsrc/pde/PorousMedia/PorosityModel.heditsrc/pde/PorousMedia/CartTable.cppedittest/sandbox/Adapt2D_DGBR2_TwoPhase_ST_Symmetric_toy.cppedittest/sandbox/Adapt2D_DGBR2_TwoPhase_Steady_QuarterFiveSpot_toy.cppedittest/sandbox/Adapt3D_DGBR2_TwoPhase_ArtificialViscosity_ST_QuarterFiveSpot_toy.cpptest/unit/pde/PorousMedia/PorosityModel_btest.cppsrc/pde/PorousMedia/PermeabilityModel2D.hbd26e2ca7266f1fe8d2f8300d781c372fade19e61597987467000https://acdl.mit.edu/csi/user/savithrusavithrusavithru@mit.eduFixed a unit test. 2020-08-21 01:24:27 -0400bd26e2ca7266f1fe8d2f8300d781c372fade19e6Fixed a unit test.edittest/unit/pde/PorousMedia/PorosityModel_btest.cppeditsrc/pde/PorousMedia/PermeabilityModel2D.htest/sandbox/Solve2D_FV_TwoPhase_QuarterFiveSpot_BDF_toy.cpp98086693ef2bab6c6e8b7876d30c6a26aeadecba1597991478000https://acdl.mit.edu/csi/user/savithrusavithrusavithru@mit.eduMissed a sandbox case. 2020-08-21 02:31:18 -040098086693ef2bab6c6e8b7876d30c6a26aeadecbaMissed a sandbox case.edittest/sandbox/Solve2D_FV_TwoPhase_QuarterFiveSpot_BDF_toy.cpptest/unit/pde/PorousMedia/PDETwoPhase2D_btest.cpptest/unit/pde/PorousMedia/PDETwoPhase_ArtificialViscosity2D_btest.cpp72fb99e9af5c8a006c47e62358fa82242e9c72691598020810000https://acdl.mit.edu/csi/user/savithrusavithrusavithru@mit.eduReverting include path for boost output_test_stream 2020-08-21 10:40:10 -040072fb99e9af5c8a006c47e62358fa82242e9c7269Reverting include path for boost output_test_streamedittest/unit/pde/PorousMedia/PDETwoPhase_ArtificialViscosity2D_btest.cppedittest/unit/pde/PorousMedia/PDETwoPhase2D_btest.cppsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_LiftedBoundary.h28d2ee11a337e79ea64c1853800bbebff1c805781598024312000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.edumade algebraic eqn-set files more consistent between Galerkin and Galerkin_Stabilized 2020-08-21 08:38:32 -070028d2ee11a337e79ea64c1853800bbebff1c80578made algebraic eqn-set files more consistent between Galerkin and Galerkin_Stabilizededitsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_LiftedBoundary.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.hsrc/Field/output_gnuplot.cpp09a4f2b1111154d957f5ca146ad8fb1cadd88b921598024422000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduinstantiated VectorS<2> output 2020-08-21 08:40:22 -070009a4f2b1111154d957f5ca146ad8fb1cadd88b92instantiated VectorS<2> outputeditsrc/Field/output_gnuplot.cpptest/unit/pde/PorousMedia/BCTwoPhaseArtificialViscosity2D_btest.cpptest/system/CodeConsistency/PDEEulermitAVDiffusion2D_Consistency_btest.cppsrc/pde/ArtificialViscosity/AVSensor_AdvectiveFlux3D.hsrc/pde/NS/PDERANSSA2D.hsrc/pde/NS/BCEulermitAVSensor1D.hsrc/pde/ArtificialViscosity/PDEmitAVSensor3D.hsrc/pde/PorousMedia/PDEBuckleyLeverett_ArtificialViscosity1D.hsrc/pde/NDConvert/PDENDConvertSpaceTime1D.hsrc/pde/Sensor/PDESensorParameter1D.htest/system/CodeConsistency/PDEmitAVSensor1D_Consistency_btest.cpptest/unit/pde/NDConvert/PDENDConvert3D_AD_btest.cpptest/unit/pde/NS/PDEEulermitAVDiffusion2D_btest.cppsrc/pde/NS/PDEEulermitAVDiffusion3D.htest/system/CodeConsistency/PDEEulermitAVDiffusion3D_RANSSA_Consistency_btest.cpptest/system/CodeConsistency/PDEmitAVSensor3D_Consistency_RANSSA_btest.cppsrc/pde/PorousMedia/BCTwoPhase1D.htest/unit/pde/PorousMedia/BCTwoPhase2D_btest.cppsrc/pde/NDConvert/PDENDConvertSpace2D.htest/unit/pde/ArtificialViscosity/AVSensor_AdvectiveFlux2D_btest.cppsrc/pde/Lorenz/PDELorenz.htest/system/CodeConsistency/PDEEulermitAVDiffusion3D_Consistency_btest.cppsrc/Discretization/HDG/IntegrandInteriorTrace_HDGAdvective.hsrc/pde/NS/PDERANSSA3D.hsrc/pde/NS/BCEulermitAVSensor2D.hsrc/pde/PorousMedia/PDETwoPhase2D.htest/system/CodeConsistency/PDEmitAVSensor2D_Consistency_btest.cpptest/unit/pde/Sensor/Sensor_AdvectiveFlux2D_btest.cpptest/unit/pde/PorousMedia/PDETwoPhase_ArtificialViscosity2D_btest.cpptest/system/CodeConsistency/PDEmitAVSensor2D_Consistency_RANSSA_btest.cppsrc/pde/Sensor/PDESensorParameter2D.htest/unit/pde/NDConvert/PDENDConvert1D_AD_btest.cpptest/unit/pde/Sensor/PDESensorParameter1D_btest.cpptest/unit/pde/Burgers/PDEBurgers_ArtificialViscosity1D_btest.cppsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion_ArtificialViscosity2D.htest/unit/pde/NDConvert/PDENDConvert2D_AD_btest.cppsrc/Discretization/HDG/IntegrandBoundaryTrace_Flux_mitState_HDGAdvective.htest/unit/pde/PorousMedia/BCTwoPhaseArtificialViscosity1D_btest.cppsrc/pde/NS/BCEuler2D_mitState.hsrc/pde/Burgers/PDEBurgers_ArtificialViscosity2D.hsrc/Discretization/HDG/IntegrandBoundaryTrace_Flux_mitState_HDG.hsrc/pde/PorousMedia/PDETwoPhase_ArtificialViscosity1D.hsrc/pde/NS/BCEuler1D_mitState_ST.hsrc/pde/NS/BCEuler3D_mitState.hsrc/pde/PorousMedia/BCTwoPhase2D.hsrc/Discretization/FV_TPFA/IntegrandInteriorTrace_FV_TPFA.hsrc/pde/SourceOnly/PDESourceOnly2D.htest/unit/pde/Sensor/Sensor_AdvectiveFlux1D_btest.cpptest/unit/pde/PorousMedia/BCBuckleyLeverett_ArtificialViscosity1D_btest.cpptest/unit/pde/Sensor/PDESensorParameter2D_btest.cppsrc/pde/NS/PDEEuler2D.hsrc/pde/NS/BCEuler1D_mitState.hsrc/pde/NDConvert/PDENDConvertSpace1D.hsrc/pde/NS/BCEulermitAVSensor3D.hsrc/pde/Stokes/PDEStokes2D.hsrc/Discretization/VMSD/IntegrandTrace_VMSD_NL.hsrc/pde/NDConvert/PDENDConvertSpaceTime3D.hsrc/pde/Sensor/Sensor_AdvectiveFlux2D.htest/unit/pde/AdvectionDiffusion/PDEAdvectionDiffusion_ArtificialViscosity2D_btest.cpptest/unit/pde/NS/PDEEulermitAVDiffusion2D_RANSSA_btest.cpptest/system/CodeConsistency/PDEmitAVSensor3D_Consistency_btest.cppsrc/pde/ArtificialViscosity/PDEmitAVSensor1D.hsrc/pde/NS/PDEEulermitAVDiffusion1D.hsrc/pde/Burgers/PDEBurgers_ArtificialViscosity1D.htest/unit/pde/NS/PDEEulermitAVDiffusion3D_btest.cppsrc/Discretization/Galerkin/IntegrandInteriorTrace_Galerkin.htest/unit/pde/PorousMedia/PDEBuckleyLeverett_ArtificialViscosity1D_btest.cppsrc/pde/PorousMedia/PDETwoPhase_ArtificialViscosity2D.hsrc/Discretization/VMSDBR2/IntegrandTrace_VMSD_BR2.hsrc/pde/SourceOnly/PDESourceOnly3D.hsrc/pde/ArtificialViscosity/AVSensor_AdvectiveFlux2D.hsrc/Discretization/HDG/IntegrandInteriorTrace_HDG.hsrc/pde/NS/PDEEuler1D.hsrc/Discretization/Galerkin/IntegrandInteriorTrace_Galerkin_Stabilized.htest/unit/pde/ArtificialViscosity/PDEmitAVSensor1D_btest.cppsrc/SolutionTrek/Continuation/Homotopy/PDEHomotopy.htest/unit/pde/PorousMedia/PDETwoPhase2D_btest.cppsrc/Discretization/DG/IntegrandInteriorTrace_DGBR2.htest/unit/pde/NDConvert/PDENDConvert1D_AD_ST_btest.cppsrc/pde/Stokes/BCStokes2D.hsrc/pde/Sensor/Sensor_AdvectiveFlux1D.htest/unit/pde/SourceOnly/PDESourceOnly2D_btest.cppsrc/pde/NDConvert/PDENDConvertSpaceTime2D.htest/system/CodeConsistency/PDEEulermitAVDiffusion1D_Consistency_btest.cpptest/unit/pde/ArtificialViscosity/AVSensor_AdvectiveFlux1D_btest.cppsrc/pde/NS/PDEEulermitAVDiffusion2D.hsrc/pde/PorousMedia/BCBuckleyLeverett1D.hsrc/pde/ArtificialViscosity/PDEmitAVSensor2D.htest/unit/pde/ArtificialViscosity/PDEmitAVSensor2D_btest.cpptest/system/CodeConsistency/PDEEulermitAVDiffusion2D_RANSSA_Consistency_btest.cppsrc/pde/ArtificialViscosity/AVSensor_AdvectiveFlux1D.htest/unit/pde/ArtificialViscosity/PDEmitAVSensor3D_btest.cpptest/unit/pde/NS/PDEEulermitAVDiffusion1D_btest.cppsrc/pde/NDConvert/PDENDConvertSpace3D.h518bc853894a55052eaba72dc6f879d8d1af4b481598165301000https://acdl.mit.edu/csi/user/savithrusavithrusavithru@mit.eduUpdated discretizations and PDE interfaces to use both paramL and paramR when evaluating fluxAdvectiveUpwind or fluxAdvectiveUpwindSpaceTime. This is important for the two-phase flow PDE, where the temporal flux depends on the porosity param-field value (which can be heterogeneous). 2020-08-23 02:48:21 -0400518bc853894a55052eaba72dc6f879d8d1af4b48Updated discretizations and PDE interfaces to use both paramL and paramR when evaluating fluxAdvectiveUpwind or fluxAdvectiveUpwindSpaceTime. This is important for the two-phase flow PDE, where the temporal flux depends on the porosity param-field value (which can be heterogeneous).edittest/system/CodeConsistency/PDEEulermitAVDiffusion2D_RANSSA_Consistency_btest.cppedittest/system/CodeConsistency/PDEEulermitAVDiffusion3D_RANSSA_Consistency_btest.cppeditsrc/pde/ArtificialViscosity/PDEmitAVSensor3D.heditsrc/pde/Lorenz/PDELorenz.hedittest/unit/pde/ArtificialViscosity/PDEmitAVSensor3D_btest.cppedittest/system/CodeConsistency/PDEEulermitAVDiffusion1D_Consistency_btest.cppedittest/unit/pde/Sensor/Sensor_AdvectiveFlux1D_btest.cppedittest/unit/pde/PorousMedia/PDETwoPhase2D_btest.cppeditsrc/pde/PorousMedia/PDETwoPhase_ArtificialViscosity1D.heditsrc/pde/ArtificialViscosity/AVSensor_AdvectiveFlux1D.heditsrc/pde/PorousMedia/PDEBuckleyLeverett_ArtificialViscosity1D.heditsrc/pde/PorousMedia/BCTwoPhase1D.hedittest/unit/pde/SourceOnly/PDESourceOnly2D_btest.cppeditsrc/pde/Burgers/PDEBurgers_ArtificialViscosity1D.heditsrc/pde/NS/PDERANSSA2D.hedittest/system/CodeConsistency/PDEEulermitAVDiffusion2D_Consistency_btest.cppedittest/unit/pde/Sensor/PDESensorParameter1D_btest.cppedittest/system/CodeConsistency/PDEEulermitAVDiffusion3D_Consistency_btest.cppedittest/unit/pde/PorousMedia/PDETwoPhase_ArtificialViscosity2D_btest.cppedittest/unit/pde/NS/PDEEulermitAVDiffusion2D_btest.cppeditsrc/pde/Burgers/PDEBurgers_ArtificialViscosity2D.heditsrc/pde/NDConvert/PDENDConvertSpaceTime2D.heditsrc/pde/NS/BCEulermitAVSensor3D.hedittest/unit/pde/ArtificialViscosity/AVSensor_AdvectiveFlux2D_btest.cppeditsrc/Discretization/VMSDBR2/IntegrandTrace_VMSD_BR2.heditsrc/pde/NS/BCEulermitAVSensor1D.hedittest/unit/pde/PorousMedia/PDEBuckleyLeverett_ArtificialViscosity1D_btest.cppedittest/unit/pde/NDConvert/PDENDConvert2D_AD_btest.cppeditsrc/Discretization/Galerkin/IntegrandInteriorTrace_Galerkin.heditsrc/pde/NS/BCEuler1D_mitState.heditsrc/pde/PorousMedia/BCBuckleyLeverett1D.heditsrc/pde/NS/PDEEulermitAVDiffusion2D.heditsrc/pde/Sensor/PDESensorParameter1D.heditsrc/pde/NDConvert/PDENDConvertSpace1D.heditsrc/pde/NS/PDEEuler1D.hedittest/unit/pde/NS/PDEEulermitAVDiffusion2D_RANSSA_btest.cppedittest/unit/pde/PorousMedia/BCTwoPhaseArtificialViscosity2D_btest.cppedittest/unit/pde/PorousMedia/BCTwoPhaseArtificialViscosity1D_btest.cppeditsrc/pde/Sensor/Sensor_AdvectiveFlux2D.heditsrc/Discretization/DG/IntegrandInteriorTrace_DGBR2.hedittest/unit/pde/NDConvert/PDENDConvert1D_AD_ST_btest.cppedittest/unit/pde/NS/PDEEulermitAVDiffusion1D_btest.cppeditsrc/Discretization/Galerkin/IntegrandInteriorTrace_Galerkin_Stabilized.hedittest/system/CodeConsistency/PDEmitAVSensor3D_Consistency_RANSSA_btest.cppeditsrc/Discretization/FV_TPFA/IntegrandInteriorTrace_FV_TPFA.hedittest/system/CodeConsistency/PDEmitAVSensor2D_Consistency_RANSSA_btest.cppedittest/system/CodeConsistency/PDEmitAVSensor2D_Consistency_btest.cppeditsrc/Discretization/HDG/IntegrandBoundaryTrace_Flux_mitState_HDGAdvective.heditsrc/pde/ArtificialViscosity/PDEmitAVSensor2D.heditsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion_ArtificialViscosity2D.hedittest/unit/pde/ArtificialViscosity/PDEmitAVSensor1D_btest.cppeditsrc/pde/NS/PDEEuler2D.heditsrc/pde/NS/BCEuler1D_mitState_ST.heditsrc/pde/Stokes/PDEStokes2D.heditsrc/pde/SourceOnly/PDESourceOnly3D.heditsrc/pde/Sensor/PDESensorParameter2D.heditsrc/Discretization/HDG/IntegrandBoundaryTrace_Flux_mitState_HDG.heditsrc/pde/ArtificialViscosity/AVSensor_AdvectiveFlux3D.heditsrc/pde/NS/BCEuler2D_mitState.hedittest/system/CodeConsistency/PDEmitAVSensor3D_Consistency_btest.cppeditsrc/pde/NS/PDEEulermitAVDiffusion3D.heditsrc/pde/ArtificialViscosity/AVSensor_AdvectiveFlux2D.heditsrc/pde/NDConvert/PDENDConvertSpaceTime3D.hedittest/unit/pde/AdvectionDiffusion/PDEAdvectionDiffusion_ArtificialViscosity2D_btest.cppedittest/unit/pde/PorousMedia/BCBuckleyLeverett_ArtificialViscosity1D_btest.cppedittest/unit/pde/Burgers/PDEBurgers_ArtificialViscosity1D_btest.cppeditsrc/Discretization/VMSD/IntegrandTrace_VMSD_NL.heditsrc/pde/PorousMedia/PDETwoPhase_ArtificialViscosity2D.heditsrc/SolutionTrek/Continuation/Homotopy/PDEHomotopy.heditsrc/pde/Stokes/BCStokes2D.hedittest/unit/pde/NDConvert/PDENDConvert3D_AD_btest.cppeditsrc/pde/SourceOnly/PDESourceOnly2D.heditsrc/pde/NS/PDERANSSA3D.hedittest/unit/pde/Sensor/PDESensorParameter2D_btest.cppeditsrc/Discretization/HDG/IntegrandInteriorTrace_HDG.heditsrc/pde/NS/BCEulermitAVSensor2D.heditsrc/pde/PorousMedia/BCTwoPhase2D.heditsrc/pde/PorousMedia/PDETwoPhase2D.heditsrc/pde/NS/BCEuler3D_mitState.heditsrc/pde/ArtificialViscosity/PDEmitAVSensor1D.heditsrc/pde/NDConvert/PDENDConvertSpace3D.heditsrc/pde/NS/PDEEulermitAVDiffusion1D.heditsrc/pde/Sensor/Sensor_AdvectiveFlux1D.hedittest/unit/pde/NDConvert/PDENDConvert1D_AD_btest.cppedittest/unit/pde/PorousMedia/BCTwoPhase2D_btest.cppedittest/system/CodeConsistency/PDEmitAVSensor1D_Consistency_btest.cppedittest/unit/pde/ArtificialViscosity/PDEmitAVSensor2D_btest.cppeditsrc/pde/NDConvert/PDENDConvertSpace2D.hedittest/unit/pde/NS/PDEEulermitAVDiffusion3D_btest.cppedittest/unit/pde/Sensor/Sensor_AdvectiveFlux2D_btest.cppeditsrc/pde/NDConvert/PDENDConvertSpaceTime1D.hedittest/unit/pde/ArtificialViscosity/AVSensor_AdvectiveFlux1D_btest.cppeditsrc/Discretization/HDG/IntegrandInteriorTrace_HDGAdvective.hsrc/Meshing/ugrid/XField_ugrid.hsrc/Meshing/ugrid/XFieldArea_ugrid.cppsrc/Meshing/ugrid/XFieldVolume_ugrid.cppcfd7990e8c76bee520d177f4ed90ae924031c7631598226098000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdate 2D ugrid reader for UNFORATTED (.r8.ugrid) files. 2020-08-23 19:41:38 -0400cfd7990e8c76bee520d177f4ed90ae924031c763Update 2D ugrid reader for UNFORATTED (.r8.ugrid) files.editsrc/Meshing/ugrid/XField_ugrid.heditsrc/Meshing/ugrid/XFieldArea_ugrid.cppeditsrc/Meshing/ugrid/XFieldVolume_ugrid.cppsrc/Meshing/ugrid/XFieldArea_ugrid.cpp54e251f56189aa1c53ce0e19cb0e1ac3c1c9646c1598236972000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix warning 2020-08-23 22:42:52 -040054e251f56189aa1c53ce0e19cb0e1ac3c1c9646cFix warningeditsrc/Meshing/ugrid/XFieldArea_ugrid.cppsrc/Meshing/ugrid/XFieldArea_ugrid.cpp9322acf530f904b253fecd56365b9651b3362bd01598276372000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix warning 2020-08-24 09:39:32 -04009322acf530f904b253fecd56365b9651b3362bd0Fix warningeditsrc/Meshing/ugrid/XFieldArea_ugrid.cpptest/unit/LinearAlgebra/DenseLinAlg/VectorS_dot_btest.cpp12140cb00a35b9cdbfa01466f7fc6432b05068921598294543000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduadded Robin BC dot product tests; currently commented out, since they fail to compile 2020-08-24 11:42:23 -070012140cb00a35b9cdbfa01466f7fc6432b0506892added Robin BC dot product tests; currently commented out, since they fail to compileedittest/unit/LinearAlgebra/DenseLinAlg/VectorS_dot_btest.cpptest/unit/LinearAlgebra/DenseLinAlg/VectorS_dot_btest.cppsrc/LinearAlgebra/DenseLinAlg/tools/dot.hcb414935e3c785ab2a22802e6ad19a79fc46eff41598370806000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduadded Tensor-Vector dot-products: e.g. dot( VectorX, TensorMatrixQ ) 2020-08-25 08:53:26 -0700cb414935e3c785ab2a22802e6ad19a79fc46eff4added Tensor-Vector dot-products: e.g. dot( VectorX, TensorMatrixQ )edittest/unit/LinearAlgebra/DenseLinAlg/VectorS_dot_btest.cppeditsrc/LinearAlgebra/DenseLinAlg/tools/dot.hsrc/Discretization/Galerkin/IntegrandBoundaryTrace_Flux_mitState_Nitsche.h62f74d4b737ca82519f36686a9c84cdfb4d2fc0f1598371002000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.educlean up: MatrixS<D,D,MatrixQ> -> TensorMatrixQ 2020-08-25 08:56:42 -070062f74d4b737ca82519f36686a9c84cdfb4d2fc0fclean up: MatrixS<D,D,MatrixQ> -> TensorMatrixQeditsrc/Discretization/Galerkin/IntegrandBoundaryTrace_Flux_mitState_Nitsche.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin.h66b8d272ba5e22370cb14abf563c95d630fc6f781598371074000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduneeded additional #include's 2020-08-25 08:57:54 -070066b8d272ba5e22370cb14abf563c95d630fc6f78needed additional #include'seditsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin.hsrc/pde/NDConvert/BCNDConvertSpace1D.h164f337e0b5deffc788685feac43b8444c5981d21598371296000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduadded ND ctor for BCs: BC( PDE, BCArgs ) 2020-08-25 09:01:36 -0700164f337e0b5deffc788685feac43b8444c5981d2added ND ctor for BCs: BC( PDE, BCArgs )editsrc/pde/NDConvert/BCNDConvertSpace1D.hsrc/pde/IncompressibleNS/PDEIncompressibleNavierStokes1DChannel.hsrc/pde/IncompressibleNS/PDEIncompressibleRANSSA1DChannel.hsrc/pde/IncompressibleNS/BCIncompressibleRANSSA1DChannel.h24fb9af50de4c5bb04cdb65d8573182a438311a51598371502000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduadded dist parameters to certain functions; added jacobianMasterState; code clean-up 2020-08-25 09:05:02 -070024fb9af50de4c5bb04cdb65d8573182a438311a5added dist parameters to certain functions; added jacobianMasterState; code clean-upeditsrc/pde/IncompressibleNS/PDEIncompressibleNavierStokes1DChannel.heditsrc/pde/IncompressibleNS/PDEIncompressibleRANSSA1DChannel.heditsrc/pde/IncompressibleNS/BCIncompressibleRANSSA1DChannel.hsrc/pde/IncompressibleNS/OutputIncompressibleNavierStokes1DChannel.h3dc7b7f054b04e196b440b1187dda99da9f4ae1e1598371615000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduadded skin friction / drag output for 1D incompressible NS channel flow 2020-08-25 09:06:55 -07003dc7b7f054b04e196b440b1187dda99da9f4ae1eadded skin friction / drag output for 1D incompressible NS channel flowaddsrc/pde/IncompressibleNS/OutputIncompressibleNavierStokes1DChannel.hsrc/Discretization/Galerkin/IntegrandBoundaryTrace_Robin_sansLG_Galerkin.htest/unit/Discretization/Galerkin/IntegrandBoundaryTrace_Robin_sansLG_Galerkin_IncRANSSA_btest.cpptest/unit/Discretization/Galerkin/IntegrandBoundaryTrace_Robin_sansLG_Galerkin_IncNS_btest.cppbae111a81cc68ab5cecbc0d0ca2d6311e1e4a84f1598373304000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduadded #if's to try different combinations of '(gradphi . K . nHat) betaBC^t rsdBC'; added incompressible NS & RANS unit tests for Robin_sansLG integrand 2020-08-25 09:35:04 -0700bae111a81cc68ab5cecbc0d0ca2d6311e1e4a84fadded #if's to try different combinations of '(gradphi . K . nHat) betaBC^t rsdBC';editsrc/Discretization/Galerkin/IntegrandBoundaryTrace_Robin_sansLG_Galerkin.haddtest/unit/Discretization/Galerkin/IntegrandBoundaryTrace_Robin_sansLG_Galerkin_IncRANSSA_btest.cppaddtest/unit/Discretization/Galerkin/IntegrandBoundaryTrace_Robin_sansLG_Galerkin_IncNS_btest.cpptest/unit/pde/PorousMedia/PDETwoPhase2D_btest.cppsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion3D.htest/unit/Discretization/FV_TPFA/JacobianInteriorTrace_FV_TPFA_AD_btest.cpptest/sandbox/Solve2D_FV_TwoPhase_QuarterFiveSpot_BDF_toy.cppsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion2D.hsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_ArtificialViscosity_TwoPhase2D.cppsrc/pde/PorousMedia/PermeabilityModel2D.hsrc/pde/PorousMedia/PorosityModel.cppsrc/pde/PorousMedia/PDETwoPhase2D.hsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion1D.htest/unit/IO/pde/PorousMedia/PorosityModel_CartTable_pattern.txtsrc/pde/AdvectionDiffusion/ViscousFlux1D.hsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_ArtificialViscosity_TwoPhase2D_LogpnSw.cppsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_ArtificialViscosity_TwoPhase2D_LogpnSw.cppsrc/pde/AdvectionDiffusion/ViscousFlux3D.hsrc/pde/AdvectionDiffusion/ViscousFlux2D.hsrc/pde/PorousMedia/BCTwoPhase2D.hsrc/pde/NDConvert/PDENDConvertSpace2D.hsrc/Discretization/FV_TPFA/IntegrandInteriorTrace_FV_TPFA.hsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_ArtificialViscosity_TwoPhase2D.cppsrc/pde/NDConvert/PDENDConvertSpace3D.htest/unit/pde/PorousMedia/PorosityModel_btest.cppsrc/pde/PorousMedia/PorosityModel.hsrc/pde/NDConvert/PDENDConvertSpace1D.h8200149dd26ded9e02805b26bf8e5e5b641ba33a1598417993000https://acdl.mit.edu/csi/user/savithrusavithrusavithru@mit.eduUpdated FV-TPFA discretization to work for heterogeneous properties + some cleanup. 2020-08-26 00:59:53 -04008200149dd26ded9e02805b26bf8e5e5b641ba33aUpdated FV-TPFA discretization to work for heterogeneous properties + some cleanup.editsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion1D.heditsrc/pde/AdvectionDiffusion/ViscousFlux2D.heditsrc/pde/PorousMedia/PDETwoPhase2D.hedittest/unit/pde/PorousMedia/PDETwoPhase2D_btest.cppeditsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_ArtificialViscosity_TwoPhase2D.cppeditsrc/pde/NDConvert/PDENDConvertSpace2D.hdeletetest/unit/IO/pde/PorousMedia/PorosityModel_CartTable_pattern.txteditsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_ArtificialViscosity_TwoPhase2D_LogpnSw.cppedittest/unit/Discretization/FV_TPFA/JacobianInteriorTrace_FV_TPFA_AD_btest.cppeditsrc/pde/AdvectionDiffusion/ViscousFlux1D.heditsrc/pde/AdvectionDiffusion/ViscousFlux3D.heditsrc/pde/PorousMedia/BCTwoPhase2D.heditsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_ArtificialViscosity_TwoPhase2D.cppeditsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_ArtificialViscosity_TwoPhase2D_LogpnSw.cppeditsrc/Discretization/FV_TPFA/IntegrandInteriorTrace_FV_TPFA.heditsrc/pde/NDConvert/PDENDConvertSpace1D.hedittest/sandbox/Solve2D_FV_TwoPhase_QuarterFiveSpot_BDF_toy.cppeditsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion3D.heditsrc/pde/NDConvert/PDENDConvertSpace3D.heditsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion2D.heditsrc/pde/PorousMedia/PermeabilityModel2D.hedittest/unit/pde/PorousMedia/PorosityModel_btest.cppeditsrc/pde/PorousMedia/PorosityModel.heditsrc/pde/PorousMedia/PorosityModel.cppsrc/pde/AdvectionDiffusion/ViscousFlux3D.hsrc/pde/AdvectionDiffusion/ViscousFlux1D.hsrc/pde/AdvectionDiffusion/ViscousFlux2D.h8db6cadb4dbb2fd2822512ded63390a33a97c6761598442956000https://acdl.mit.edu/csi/user/savithrusavithrusavithru@mit.eduAdded missing includes 2020-08-26 07:55:56 -04008db6cadb4dbb2fd2822512ded63390a33a97c676Added missing includeseditsrc/pde/AdvectionDiffusion/ViscousFlux1D.heditsrc/pde/AdvectionDiffusion/ViscousFlux2D.heditsrc/pde/AdvectionDiffusion/ViscousFlux3D.htest/unit/LinearAlgebra/DenseLinAlg/VectorS_dot_btest.cppsrc/LinearAlgebra/DenseLinAlg/tools/dot.hsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_MatrixS_Instantiate.cppsrc/Discretization/Galerkin/IntegrandBoundaryTrace_Robin_sansLG_Galerkin.htest/unit/LinearAlgebra/DenseLinAlg/MatrixS_of_MatrixS_btest.cppsrc/pde/IncompressibleNS/BCIncompressibleRANS1DChannel.nbtest/unit/Discretization/Galerkin/IntegrandBoundaryTrace_Robin_sansLG_Galerkin_IncRANSSA_btest.cpptest/unit/Discretization/Galerkin/IntegrandBoundaryTrace_Robin_sansLG_Galerkin_IncNS_btest.cpp0cf665b18e1912c30a9558aa847decad1b9c77bd1598460375000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduremoved dot-products supporting (K . nHat) operator in Robin_sansLG BCs, and reverted back to mat-muls; added unit tests for 1D NS and RANS 2020-08-26 09:46:15 -07000cf665b18e1912c30a9558aa847decad1b9c77bdremoved dot-products supporting (K . nHat) operator in Robin_sansLG BCs, and revertededitsrc/Discretization/Galerkin/IntegrandBoundaryTrace_Robin_sansLG_Galerkin.hedittest/unit/LinearAlgebra/DenseLinAlg/MatrixS_of_MatrixS_btest.cppeditsrc/LinearAlgebra/DenseLinAlg/tools/dot.haddsrc/pde/IncompressibleNS/BCIncompressibleRANS1DChannel.nbeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_MatrixS_Instantiate.cppedittest/unit/Discretization/Galerkin/IntegrandBoundaryTrace_Robin_sansLG_Galerkin_IncRANSSA_btest.cppedittest/unit/LinearAlgebra/DenseLinAlg/VectorS_dot_btest.cppedittest/unit/Discretization/Galerkin/IntegrandBoundaryTrace_Robin_sansLG_Galerkin_IncNS_btest.cpptest/unit/Discretization/GloballyConstrained/CMakeLists.txttest/unit/Discretization/Galerkin/CMakeLists.txt85efbed7229de5056eeecba6c10f54fff6f9e6b71598475408000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduadded IncompressibleNSLib to unit test builders 2020-08-26 13:56:48 -070085efbed7229de5056eeecba6c10f54fff6f9e6b7added IncompressibleNSLib to unit test buildersedittest/unit/Discretization/GloballyConstrained/CMakeLists.txtedittest/unit/Discretization/Galerkin/CMakeLists.txttest/sandbox/Solve1D_CG_IncNS1D_Channel_toy.cpptest/sandbox/Solve1D_CG_IncRANSSA1D_Channel_toy.cppb74a0c3ff0ce0f113698b7aae26be65c5073f0601598475581000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.edulatest sandbox tests for 1D fully developed channel flow 2020-08-26 13:59:41 -0700b74a0c3ff0ce0f113698b7aae26be65c5073f060latest sandbox tests for 1D fully developed channel flowedittest/sandbox/Solve1D_CG_IncNS1D_Channel_toy.cppedittest/sandbox/Solve1D_CG_IncRANSSA1D_Channel_toy.cppsrc/LinearAlgebra/AlgebraicEquationSetBase.hsrc/NonLinearSolver/NonLinearSolver.htest/unit/pde/NS/PDEEuler3D_RotorSource_btest.cpptest/unit/LinearAlgebra/SparseLinAlg/PETSc/PETSc_LinearSolver_btest.cppsrc/SolutionTrek/Continuation/PseudoTime/AlgebraicEquationSet_PTC.hsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized.hsrc/SolutionTrek/Continuation/PseudoTime/AlgebraicEquationSetBase_PTC.hsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_Transpose.htest/unit/Discretization/GloballyConstrained/AlgebraicEquationSet_GloballyConstrained_btest.cppsrc/pde/NS/PDEEuler3D_RotorSource.hsrc/LinearAlgebra/AlgebraicEquationSet_Traits.hsrc/LinearAlgebra/AlgebraicEquationSetBase_GloballyConstrained.hsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_InverseLUP_Surreal_Instantiate.cppsrc/SolutionTrek/Continuation/Homotopy/AlgebraicEquationSet_HTC2.htest/unit/Discretization/GloballyConstrained/Ping_Euler_RotorSource_btest.cppsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/SparseLinAlg_LinearSolver.hsrc/Discretization/HDG/DiscretizationHDG.hsrc/pde/NS/OutputEuler3D.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized.hsrc/LinearAlgebra/TransposeTraits.hsrc/LinearAlgebra/SparseLinAlg/SparseLinAlg_LinearSolver.cppsrc/Discretization/Galerkin/ResidualCell_Galerkin_HB.hsrc/SolutionTrek/Continuation/PseudoTime/PseudoTime.hsrc/SolutionTrek/Continuation/PseudoTime/AlgebraicEquationSet_Block2x2_PTC.hsrc/NonLinearSolver/NewtonSolver_MatrixBlock_2x2_Instantiate.cppsrc/SolutionTrek/Continuation/Homotopy/Homotopy.hsrc/Discretization/Galerkin/Stabilization_Galerkin.htest/unit/Discretization/GloballyConstrained/CMakeLists.txtsrc/NonLinearSolver/LineUpdate/HalvingSearchLineUpdate_MatrixBlock_2x2_Instantiate.cppsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Conservative.hfc441b5d332f0ec7599e557d524b9f7df23e07691598734651000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdated global contraints. Solve rotor speed at specified power. 2020-08-29 16:57:31 -0400fc441b5d332f0ec7599e557d524b9f7df23e0769Updated global contraints. Solve rotor speed at specified power.edittest/unit/LinearAlgebra/SparseLinAlg/PETSc/PETSc_LinearSolver_btest.cppeditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized.heditsrc/Discretization/Galerkin/ResidualCell_Galerkin_HB.heditsrc/SolutionTrek/Continuation/Homotopy/Homotopy.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized.heditsrc/LinearAlgebra/BlockLinAlg/MatrixBlock_2x2_Transpose.heditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_InverseLUP_Surreal_Instantiate.cppeditsrc/Discretization/Galerkin/Stabilization_Galerkin.heditsrc/SolutionTrek/Continuation/PseudoTime/AlgebraicEquationSet_PTC.heditsrc/SolutionTrek/Continuation/PseudoTime/PseudoTime.heditsrc/Discretization/HDG/DiscretizationHDG.hedittest/unit/pde/NS/PDEEuler3D_RotorSource_btest.cppeditsrc/NonLinearSolver/NonLinearSolver.heditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppeditsrc/pde/NS/PDEEuler3D_RotorSource.heditsrc/SolutionTrek/Continuation/Homotopy/AlgebraicEquationSet_HTC2.hedittest/unit/Discretization/GloballyConstrained/CMakeLists.txtedittest/unit/Discretization/GloballyConstrained/AlgebraicEquationSet_GloballyConstrained_btest.cppaddtest/unit/Discretization/GloballyConstrained/Ping_Euler_RotorSource_btest.cppeditsrc/LinearAlgebra/AlgebraicEquationSetBase.heditsrc/SolutionTrek/Continuation/PseudoTime/AlgebraicEquationSetBase_PTC.heditsrc/LinearAlgebra/SparseLinAlg/SparseLinAlg_LinearSolver.cppeditsrc/SolutionTrek/Continuation/PseudoTime/AlgebraicEquationSet_Block2x2_PTC.heditsrc/LinearAlgebra/AlgebraicEquationSet_Traits.heditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Conservative.heditsrc/LinearAlgebra/AlgebraicEquationSetBase_GloballyConstrained.heditsrc/LinearAlgebra/SparseLinAlg/SparseLinAlg_LinearSolver.heditsrc/pde/NS/OutputEuler3D.heditsrc/LinearAlgebra/TransposeTraits.heditsrc/NonLinearSolver/NewtonSolver_MatrixBlock_2x2_Instantiate.cppeditsrc/NonLinearSolver/LineUpdate/HalvingSearchLineUpdate_MatrixBlock_2x2_Instantiate.cppsrc/SolutionTrek/Continuation/PseudoTime/AlgebraicEquationSetBase_PTC.htest/unit/Discretization/GloballyConstrained/AlgebraicEquationSet_GloballyConstrained_btest.cppsrc/SolutionTrek/Continuation/Homotopy/AlgebraicEquationSet_HTC2.htest/unit/LinearAlgebra/SparseLinAlg/PETSc/PETSc_LinearSolver_btest.cpp59abec0d0a7385bbf18f06464fbb2cf9a3a2d3181598799570000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduCompile fixes 2020-08-30 10:59:30 -040059abec0d0a7385bbf18f06464fbb2cf9a3a2d318Compile fixesedittest/unit/Discretization/GloballyConstrained/AlgebraicEquationSet_GloballyConstrained_btest.cppeditsrc/SolutionTrek/Continuation/PseudoTime/AlgebraicEquationSetBase_PTC.heditsrc/SolutionTrek/Continuation/Homotopy/AlgebraicEquationSet_HTC2.hedittest/unit/LinearAlgebra/SparseLinAlg/PETSc/PETSc_LinearSolver_btest.cppsrc/SolutionTrek/Continuation/PseudoTime/AlgebraicEquationSetBase_GloballyConstrained_PTC.hsrc/Discretization/Galerkin/ResidualParamSensitvity_Galerkin_Stabilized.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Rotor_GlobalConstraint.ha7f7029160297800fa1b93a2457cb31b9c6108901598799881000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdd missing files 2020-08-30 11:04:41 -0400a7f7029160297800fa1b93a2457cb31b9c610890Add missing filesaddsrc/Discretization/Galerkin/AlgebraicEquationSet_Rotor_GlobalConstraint.haddsrc/SolutionTrek/Continuation/PseudoTime/AlgebraicEquationSetBase_GloballyConstrained_PTC.haddsrc/Discretization/Galerkin/ResidualParamSensitvity_Galerkin_Stabilized.hsrc/Field/output_gnuplot.cppsrc/Field/output_gnuplot.h48eca3c7872ff5d661ede2803d44c0ec2d5acea61598918398000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduadded optional parameter to output_gnuplot for number of points per element (default remains 11) 2020-08-31 16:59:58 -070048eca3c7872ff5d661ede2803d44c0ec2d5acea6added optional parameter to output_gnuplot for number of points per element (default remains 11)editsrc/Field/output_gnuplot.heditsrc/Field/output_gnuplot.cppsrc/pde/IncompressibleNS/PDEIncompressibleNavierStokes1DChannel.hsrc/pde/IncompressibleNS/PDEIncompressibleRANSSA1DChannel.htest/unit/pde/IncompressibleNS/PDEIncompressibleRANSSA1DChannel_btest.cpped3c04143fd2b2f8e61f474bd2beaa3cd37707251598918822000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.educode cleanup for 1D NS/RANS 2020-08-31 17:07:02 -0700ed3c04143fd2b2f8e61f474bd2beaa3cd3770725code cleanup for 1D NS/RANSeditsrc/pde/IncompressibleNS/PDEIncompressibleNavierStokes1DChannel.heditsrc/pde/IncompressibleNS/PDEIncompressibleRANSSA1DChannel.hedittest/unit/pde/IncompressibleNS/PDEIncompressibleRANSSA1DChannel_btest.cpptest/unit/pde/IncompressibleNS/SolutionFunction_IncompressibleRANSSA1DChannel_btest.cppsrc/pde/IncompressibleNS/SolutionFunction_IncompressibleRANSSA1DChannel.hsrc/pde/IncompressibleNS/SolutionFunction_IncompressibleRANSSA1DChannel.cppsrc/pde/IncompressibleNS/CMakeLists.txt0965ea5b1dd9c86943b6c97d846fa0f2db2d8d761598919107000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.edusolution function for 1D RANS: analytic law-of-the-wall for SA 2020-08-31 17:11:47 -07000965ea5b1dd9c86943b6c97d846fa0f2db2d8d76solution function for 1D RANS: analytic law-of-the-wall for SAaddsrc/pde/IncompressibleNS/SolutionFunction_IncompressibleRANSSA1DChannel.haddtest/unit/pde/IncompressibleNS/SolutionFunction_IncompressibleRANSSA1DChannel_btest.cppaddsrc/pde/IncompressibleNS/SolutionFunction_IncompressibleRANSSA1DChannel.cppeditsrc/pde/IncompressibleNS/CMakeLists.txttest/unit/IO/pde/PDEIncompressibleRANSSA1DChannel_pattern.txt651a791e7356bf7af3b548ad7a31acae7fe5ba611598919141000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.edumissed a pattern file 2020-08-31 17:12:21 -0700651a791e7356bf7af3b548ad7a31acae7fe5ba61missed a pattern fileaddtest/unit/IO/pde/PDEIncompressibleRANSSA1DChannel_pattern.txttest/unit/pde/IncompressibleNS/BCIncompressibleRANSSA1DChannel_btest.cpp564766c8701290711362cdb94fe26981ead80cfc1598919251000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.edumissed a unit test file 2020-08-31 17:14:11 -0700564766c8701290711362cdb94fe26981ead80cfcmissed a unit test fileedittest/unit/pde/IncompressibleNS/BCIncompressibleRANSSA1DChannel_btest.cpptest/sandbox/Solve1D_CG_IncRANSSA1D_Channel_toy.cpp8fa84baec068ec3d6d34c19a540a7d50048615091598919368000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduupdated 1D RANS fully developed channel flow case to (a) work, (b) output useful data, and (c) dump CG tecplot files 2020-08-31 17:16:08 -07008fa84baec068ec3d6d34c19a540a7d5004861509updated 1D RANS fully developed channel flow case to (a) work, (b) output useful 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ialViscosity_toy.cpptest/sandbox/Solve2D_DGBR2_Triangle_Euler_GaussianBump_ArtificialViscosity_toy.cpptest/sandbox/Adapt3D_DGBR2_RANSSA_CornerFlatPlate_toy.cpptest/sandbox/Adapt3D_VMSD_RANSSA_FlatPlate_toy.cpptest/sandbox/Solve4D_DGBR2_AD_ST_toy.cpptest/sandbox/Solve3D_DGBR2_RANSSA_CRM_Sub_toy.cpptest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cpptest/unit/Discretization/Galerkin/FunctionalBoundaryTrace_WeightedResidual_Galerkin_btest.cpp8580065ee4b322bca89cdf0ff704b0d333bbb0911598921748000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix all output functionals to properly work in parallel 2020-08-31 20:55:48 -04008580065ee4b322bca89cdf0ff704b0d333bbb091Fix all output functionals to properly work in paralleledittest/sandbox/Solve1D_DGBR2_Line_Euler_Nozzle_ArtificialViscosity_toy.cppedittest/sandbox/Adapt4D_L2Project_MOESS_toy.cppedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_FixDOF_toy.cppeditsrc/Meshing/EPIC/WriteMeshMetric_Epic.cppedittest/sandbox/Adapt3D_DGBR2_RANSSA_CornerFlatPlate_toy.cppeditsrc/Discretization/Galerkin/FunctionalBoundaryTrace_Galerkin.hedittest/sandbox/Adapt4D_DGBR2_AD_ST_toy.cppedittest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_Joukowski_ArtificialViscosity_toy.cppedittest/sandbox/Solve3D_CGStabilized_RANSSA_HemisphereCylinder_toy.cppedittest/sandbox/Adapt2D_VMSD_RANSSA_MultiElementAirfoil_Q1_toy.cppedittest/sandbox/Solve2D_FV_TwoPhase_QuarterFiveSpot_BDF_toy.cppedittest/sandbox/Solve3D_Galerkin_Stabilized_AD_ST_toy.cppedittest/sandbox/Solve3D_Galerkin_Stabilized_NavierStokes_OjedaMMS_toy.cppedittest/unit/Discretization/Galerkin/JacobianFunctionalBoundaryTrace_WeightedResidual_Galerkin_btest.cppedittest/sandbox/Adapt4D_VMSD_AD_ST_toy.cppeditsrc/Discretization/VMSD/FunctionalBoundaryTrace_WeightedResidual_VMSD.heditsrc/Discretization/VMSDBR2/JacobianFunctionalBoundaryTrace_VMSD_BR2.hedittest/sandbox/Solve2D_DGBR2_Triangle_Euler_Ramp_ArtificialViscosity_toy.cppedittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppeditsrc/Field/Partition/XField_Lagrange_balance_impl.hedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppedittest/sandbox/Solve1D_DGBR2_Line_Euler_ShuOsher_AV_ST_toy.cppedittest/sandbox/Adapt4D_Galerkin_Stabilized_AD_ST_toy.cppeditsrc/Adaptation/MOESS/SolverInterface_VMSD_BR2.hedittest/sandbox/Adapt1D_L2Project_MOESS_toy.cppedittest/sandbox/Adapt3D_Galerkin_Stabilized_AD_ST_toy.cppedittest/sandbox/Solve2D_VMSDBR2_HOW5_VI2_toy.cppedittest/sandbox/Solve3D_DGBR2_AD_ST_toy.cppeditsrc/Adaptation/MOESS/SolverInterface_L2Project.hedittest/sandbox/Adapt4D_VMSD_AD_ST_SquareChannel_toy.cppedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppedittest/sandbox/Adapt2D_VMSD_RANSSA_AV_MultiElementAirfoil_toy.cppedittest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppedittest/sandbox/Adapt2D_DGBR2_Euler_GilesPierce_AV_toy.cppedittest/sandbox/Adapt3D_DGBR2_RANSSA_CRM_toy.cppedittest/sandbox/Adapt4D_L2Project_toy.cppedittest/unit/Discretization/Galerkin/FunctionalCell_Galerkin_btest.cppeditsrc/Field/Partition/XField_Lagrange_Distribute_impl.hedittest/sandbox/Adapt3D_VMSD_RANSSA_FlatPlate_toy.cppeditsrc/Discretization/VMSDBR2/FunctionalBoundaryTrace_VMSD_BR2.hedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_Pollutant_toy.cppeditsrc/Meshing/avro/MesherInterface_avro.cppedittest/sandbox/Solve3D_CGStabilized_RANSSA_CRM_Sub_toy.cppedittest/unit/ErrorEstimate/ErrorEstimate_Common_btest.cppedittest/sandbox/Solve2D_DGBR2_Triangle_NavierStokes_NACADuct_toy.cppedittest/sandbox/Solve2D_VMSD_Triangle_NavierStokes_OjedaMMS_toy.cppedittest/sandbox/Solve3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppeditsrc/Discretization/DG/FunctionalBoundaryTrace_DGBR2.hedittest/sandbox/Adapt2D_VMSD_AD_ST_toy.cppedittest/sandbox/ErrorOrder_1D_Galerkin_Stabilized_AD_Oliver_toy.cppeditsrc/Adaptation/MOESS/SolverInterface_DGBR2.hedittest/sandbox/Solve1D_DGBR2_Line_Euler_ArtNozzle_AV_BDF_toy.cppeditsrc/Adaptation/MOESS/SolverInterface_AGLS.hedittest/sandbox/Solve3D_CG_NACA_FP_Drela_toy.cppeditsrc/Discretization/Galerkin/FunctionalBoundaryTrace_FieldTrace_Galerkin.hedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppedittest/sandbox/Solve4D_DGBR2_AD_ST_SquareChannel_toy.cppeditsrc/Meshing/EPIC/SolutionField_PX.cppedittest/sandbox/Solve2D_VMSDBR2_HOW5_VI2_AV_HTC_toy.cppeditsrc/pde/AdvectionDiffusion/ViscousFlux2D.hedittest/sandbox/Solve2D_DGBR2_TwoPhase_ArtificialViscosity_QuarterFiveSpot_BDF_toy.cppeditsrc/Adaptation/MOESS/SolverInterface_VMSD.heditsrc/pde/AdvectionDiffusion/ViscousFlux3D.hedittest/sandbox/Adapt3D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cppedittest/sandbox/Solve4D_L2Project_toy.cppedittest/sandbox/Solve2D_VMSD_HOW5_VI2_toy.cppedittest/sandbox/Solve1D_DGBR2_Line_Euler_ArtNozzle_AV_Steady_toy.cppedittest/sandbox/Solve4D_VMSD_AD_ST_SquareChannel_toy.cppedittest/sandbox/Solve4D_VMSD_AD_ST_toy.cppedittest/system/Asymptotic/ErrorOrder_3D_DGBR2_Periodic_Hex_AD_btest.cppeditsrc/Meshing/libMeshb/ReadSolution_libMeshb.cppeditsrc/Adaptation/MOESS/SolverInterface_DGAdvective.heditsrc/Meshing/avro/MesherInterface_Wake_avro.cppeditsrc/Discretization/DG/FunctionalCell_DGBR2.hedittest/sandbox/Adapt3D_DGBR2_RANSSA_HCH_toy.cppedittest/sandbox/Solve2D_CGStabilized_Triangle_RANSSA_Joukowski_ArtificialViscosity_toy.cppedittest/sandbox/Adapt2D_L2Project_MOESS_toy.cppeditsrc/Discretization/Galerkin/FunctionalBoundaryTrace_WeightedResidual_Galerkin.hedittest/sandbox/Adapt4D_VMSD_AD_ST_ExpandingSphericalWave_toy.cppaddtest/unit/Discretization/Galerkin/FunctionalBoundaryTrace_Galerkin_btest.cppeditsrc/Meshing/gmsh/WriteMesh_gmsh.cppedittest/sandbox/Adapt1D_DGBR2_Line_Euler_SSMENozzle_toy.cppedittest/sandbox/Solve2D_DGBR2_Triangle_Euler_NACA0012_ArtificialViscosity_toy.cppedittest/sandbox/Solve3D_DGBR2_RANSSA_HemisphereCylinder_toy.cppedittest/sandbox/Adapt1D_DGBR2_Line_Euler_GilesPierce_toy.cppedittest/sandbox/Solve3D_CG_NACA_LIP_Drela_toy.cppedittest/unit/Discretization/VMSDBR2/JacobianFunctionalBoundaryTrace_VMSDBR2_btest.cppedittest/sandbox/Adapt3D_DGBR2_RANSSA_ArtificialViscosity_ONERA_M6_toy.cppeditsrc/Meshing/refine/MultiScale_metric.cppedittest/sandbox/Solve3D_Galerkin_Stabilized_RANSSA_HemisphereCylinder_toy.cppedittest/sandbox/Adapt4D_Galerkin_Stabilized_AD_ST_SquareChannel_toy.cppedittest/sandbox/Adapt2D_VMSDBR2_NavierStokes_Blottner_Mach20_AV_HTC_toy.cppeditsrc/Meshing/libMeshb/WriteSolution_libMeshb.cppedittest/sandbox/Solve3D_CGStabilized_Euler_Bump_ArtificialViscosity_toy.cppedittest/sandbox/Solve4D_VMSD_AD_ST_ExpandingSphericalWave_toy.cppedittest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cppedittest/unit/Discretization/HDG/FunctionalBoundaryTrace_HDG_sansLG_btest.cppedittest/sandbox/Solve2D_DGBR2_TwoPhase_QuarterFiveSpot_BDF_toy.cppedittest/sandbox/Adapt3D_VMSD_NavierStokes_DeltaWing_FixDOF_toy.cppeditsrc/Discretization/HDG/FunctionalBoundaryTrace_HDG_sansLG.hedittest/sandbox/Adapt2D_VMSD_RANSSA_MultiElementAirfoil_toy.cppedittest/sandbox/Adapt2D_DGBR2_RANSSA_Joukowski_toy.cppedittest/sandbox/Adapt2D_DGBR2_TwoPhase_Steady_QuarterFiveSpot_toy.cppedittest/sandbox/Solve3D_DGBR2_RANSSA_CRM_toy.cppedittest/sandbox/Solve3D_DGBR2_Tet_NS_2_Cylinder_toy.cppedittest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_FlatPlate_toy.cppedittest/sandbox/Solve3D_CGStabilized_RANSSA_OneraM6_Subsonic_toy.cppeditsrc/Field/Tuple/ParamTuple.hedittest/sandbox/Adapt3D_L2Project_MultiScale_toy.cppeditsrc/pde/NS/OutputEuler2D.heditsrc/pde/AdvectionDiffusion/ViscousFlux1D.hedittest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_GaussianBump_ArtificialViscosity_toy.cppedittest/sandbox/Solve3D_VMSDBR2_BlottnerSphere_AV_HTC_toy.cppedittest/sandbox/Adapt3D_VMSDBR2_NavierStokes_DeltaWing_Chain_toy.cppedittest/sandbox/Adapt3D_VMSD_AD_ST_toy.cppedittest/sandbox/Solve3D_CGStabilized_RANSSA_OneraM6_ArtificialViscosity_toy.cppedittest/sandbox/Adapt3D_DGBR2_RANSSA_CRM_Sub_toy.cppedittest/sandbox/Adapt3D_VMSD_RANSSA_CornerFlatPlate_toy.cppedittest/sandbox/Solve4D_Galerkin_Stabilized_AD_ST_toy.cppedittest/sandbox/Solve1D_DGBR2_TwoPhaseLinearized_BDF_toy.cppedittest/sandbox/Solve4D_Galerkin_Stabilized_AD_ST_SquareChannel_toy.cppedittest/sandbox/Adapt3D_L2Project_MOESS_toy.cppedittest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_MultiScale_toy.cppeditsrc/Adaptation/MOESS/SolverInterface_Galerkin.hedittest/sandbox/Solve2D_VMSD_HOW5_VI2_AV_toy.cppedittest/sandbox/Solve3D_CGStabilized_RANSSA_OneraM6_Subsonic_ArtificialViscosity_toy.cppeditsrc/Meshing/EPIC/XField_PX.cppedittest/sandbox/Solve2D_CGStabilized_Triangle_Euler_GaussianBump_ArtificialViscosity_toy.cppedittest/sandbox/Adapt3D_VMSDBR2_RANSSA_HemisphereCylinder_toy.cppedittest/sandbox/ErrorOrder_1D_Galerkin_Stabilized_AD_DoubleBL_toy.cppedittest/sandbox/Adapt2D_CGStabilized_HOW5_CI1_ArtificialViscosity_toy.cppedittest/sandbox/Adapt2D_VMSDBR2_RANSSA_Joukowski_toy.cppedittest/unit/Discretization/Galerkin/FunctionalBoundaryTrace_WeightedResidual_Galerkin_btest.cppeditsrc/Adaptation/MOESS/SolverInterface_AGLS_LiftedBoundary.hedittest/sandbox/Adapt2D_VMSD_RANSSA_MultiElementAirfoil_Q1_refine_toy.cppedittest/sandbox/Adapt3D_DGBR2_RANSSA_HemisphereCylinder_toy.cppeditsrc/Meshing/ugrid/WriteMesh_ugrid.cppedittest/sandbox/Solve1D_DGBR2_Line_Euler_ArtNozzle_AV_ST_toy.cppedittest/sandbox/Solve3D_VMSDBR2_RANSSA_HemisphereCylinder_toy.cppeditsrc/Discretization/Galerkin/FunctionalCell_Galerkin.hedittest/sandbox/Solve4D_DGBR2_AD_ST_toy.cppedittest/sandbox/Adapt2D_VMSD_Triangle_RANSSA_Joukowski_ArtificialViscosity_toy.cppeditsrc/Discretization/HDG/FunctionalCell_HDG.hedittest/sandbox/Adapt3D_VMSD_NavierStokes_DeltaWing_Chain_toy.cppedittest/unit/Discretization/DG/FunctionalBoundaryTrace_DGBR2_btest.cppedittest/sandbox/Solve2D_VMSD_Triangle_NavierStokes_Joukowski_ArtificialViscosity_toy.cppeditsrc/Meshing/refine/MesherInterface_refine.cppedittest/sandbox/Solve2D_CGStabilized_Triangle_RANSSA_Joukowski_BLSC_toy.cppedittest/sandbox/Adapt1D_DGAdvective_Line_Euler_GilesPierce_toy.cppedittest/sandbox/Solve2D_DGBR2_Euler_Riemann_AV_RK_toy.cppedittest/sandbox/Solve3D_DGBR2_NavierStokes_OjedaMMS_toy.cppedittest/sandbox/Solve1D_Lorenz_toy.cppedittest/sandbox/Adapt3D_VMSD_AD_TripleBoundaryLayer_toy.cppedittest/sandbox/Adapt4D_DGBR2_AD_ST_SquareChannel_toy.cppedittest/sandbox/Solve2D_DGBR2_Triangle_RANSSA_Joukowski_toy.cppeditsrc/Meshing/avro/XField_avro_impl.hedittest/sandbox/Solve2D_DGBR2_Triangle_RANSSA_Joukowski_ArtificialViscosity_toy.cppedittest/sandbox/Adapt2D_VMSD_RANSSA_AV_MultiElementAirfoil_Q1_toy.cppedittest/sandbox/Solve2D_CGStabilized_Triangle_Euler_NACA0012_ArtificialViscosity_toy.cppedittest/sandbox/ErrorOrder_1D_VMSD_AD_toy.cppedittest/sandbox/Solve2D_DGBR2_Triangle_NavierStokes_FlatPlate_toy.cppedittest/sandbox/Solve1D_DGBR2_Line_Euler_Sod_AV_ST_toy.cppeditsrc/Adaptation/MOESS/SolverInterface.hedittest/sandbox/Adapt3D_DGBR2_RANSSA_FlatPlate_toy.cppedittest/sandbox/Solve2D_DGBR2_Quad_Euler_ForwardFacingStep_AV_BDF_toy.cppedittest/sandbox/Solve1D_DGBR2_BuckleyLeverett_ArtificialViscosity_BDF_toy.cppedittest/sandbox/Solve2D_DGBR2_Triangle_Euler_GaussianBump_ArtificialViscosity_toy.cppedittest/sandbox/Adapt2D_DGBR2_NavierStokes_FlatPlate_LikelihoodSweep_toy.cppedittest/sandbox/Solve3D_DGBR2_RANSSA_CRM_Sub_toy.cppedittest/sandbox/Solve3D_VMSD_AD_ST_toy.cppedittest/sandbox/Solve3D_VMSD_NavierStokes_OjedaMMS_toy.cppeditsrc/LinearAlgebra/SparseLinAlg/tools/MPI_dot.cppedittest/sandbox/Solve2D_DGBR2_Euler_ForwardStep_AV_ST_toy.cppedittest/sandbox/Solve1D_DGBR2_Line_Euler_Lax_AV_ST_toy.cppedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_Chain_toy.cppeditsrc/Discretization/VMSD/FunctionalCell_VMSD.hedittest/sandbox/Solve2D_DGBR2_Quadrilateral_RANSSA_Joukowski_UROP_toy.cppedittest/sandbox/Adapt3D_VMSD_NavierStokes_DeltaWing_toy.cppedittest/sandbox/Adapt2D_DGBR2_NavierStokes_FlatPlate_MCMC_toy.cpptest/unit/Discretization/Galerkin/IntegrandBoundaryTrace_Robin_sansLG_Galerkin_IncRANSSA_btest.cpp180d30bf777309664b7d2809f511c5c24a47b0691598923928000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduname change for test suite to avoid link conflict for 'make unit' 2020-08-31 18:32:08 -0700180d30bf777309664b7d2809f511c5c24a47b069name change for test suite to avoid link conflict for 'make unit'edittest/unit/Discretization/Galerkin/IntegrandBoundaryTrace_Robin_sansLG_Galerkin_IncRANSSA_btest.cppsrc/Discretization/Potential_Drela/ResidualParamSensitivity_CG_Potential_Drela.h143c801d9e781e6009c661d93f5843b2b7078d671598925838000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix compile error 2020-08-31 22:03:58 -0400143c801d9e781e6009c661d93f5843b2b7078d67Fix compile erroreditsrc/Discretization/Potential_Drela/ResidualParamSensitivity_CG_Potential_Drela.hsrc/UserInterfaces/LIPSolver.cpp5f9382fcd86a5ec2c16f12f7f1dbca94cfbe9a521598965040000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduCompile fix 2020-09-01 08:57:20 -04005f9382fcd86a5ec2c16f12f7f1dbca94cfbe9a52Compile fixeditsrc/UserInterfaces/LIPSolver.cpptest/sandbox/Solve2D_HDG_Triangle_NavierStokes_OjedaMMS_toy.cpped97aa8b28714ea77f492f058e2c6893a51beb5c1598971605000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMissing include 2020-09-01 10:46:45 -0400ed97aa8b28714ea77f492f058e2c6893a51beb5cMissing includeedittest/sandbox/Solve2D_HDG_Triangle_NavierStokes_OjedaMMS_toy.cpptest/unit/Discretization/HDG/FunctionalCell_HDG_btest.cpptest/sandbox/Solve2D_EDG_Triangle_Stokes_OjedaMMS_toy.cpptest/sandbox/Solve2D_HDG_Triangle_Euler_CubicSource_toy.cppde6c4a15b549abe5e504bddae58e1d000ba8b66c1598971822000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMore missing includes 2020-09-01 10:50:22 -0400de6c4a15b549abe5e504bddae58e1d000ba8b66cMore missing includesedittest/sandbox/Solve2D_HDG_Triangle_Euler_CubicSource_toy.cppedittest/unit/Discretization/HDG/FunctionalCell_HDG_btest.cppedittest/sandbox/Solve2D_EDG_Triangle_Stokes_OjedaMMS_toy.cpptest/unit/Discretization/HDG/JacobianFunctionalCell_HDG_btest.cpptest/unit/Discretization/HDG/FunctionalCellwise_HDG_btest.cppa0887e8bc788c6f4b9276ff33c59c019d990aa7d1598989706000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMore missing includes 2020-09-01 15:48:26 -0400a0887e8bc788c6f4b9276ff33c59c019d990aa7dMore missing includesedittest/unit/Discretization/HDG/JacobianFunctionalCell_HDG_btest.cppedittest/unit/Discretization/HDG/FunctionalCellwise_HDG_btest.cpptest/unit/pde/IncompressibleNS/PDEIncompressibleNavierStokes1DChannel_btest.cpptest/unit/pde/IncompressibleNS/PDEIncompressibleRANSSA1DChannel_btest.cpptest/unit/pde/IncompressibleNS/BCIncompressibleRANSSA1DChannel_btest.cpptest/unit/pde/IncompressibleNS/BCIncompressibleNavierStokes1DChannel_btest.cpp7c276642e3bd42489c7bfe872f306a062ed32a4d1599003176000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.edureverted to depricated include directory for <boost/test/unit_test.hpp> 2020-09-01 16:32:56 -07007c276642e3bd42489c7bfe872f306a062ed32a4dreverted to depricated include directory for <boost/test/unit_test.hpp>edittest/unit/pde/IncompressibleNS/BCIncompressibleNavierStokes1DChannel_btest.cppedittest/unit/pde/IncompressibleNS/PDEIncompressibleNavierStokes1DChannel_btest.cppedittest/unit/pde/IncompressibleNS/BCIncompressibleRANSSA1DChannel_btest.cppedittest/unit/pde/IncompressibleNS/PDEIncompressibleRANSSA1DChannel_btest.cpptest/system/Asymptotic/Adjoint2D_HDG_Triangle_AD_sansLG_btest.cpptest/system/Asymptotic/ErrorOrder_1D_HDGAdvective_Advection_btest.cpptest/system/Asymptotic/Adjoint2D_HDG_Triangle_AD_mitState_btest.cpptest/system/Asymptotic/ErrorOrder_2D_HDG_Triangle_AD_btest.cpptest/unit/Discretization/HDG/FunctionalBoundaryTrace_HDG_sansLG_btest.cpptest/system/Asymptotic/ErrorOrder_1D_HDG_Burgers_btest.cppsrc/LinearAlgebra/AlgebraicEquationSetBase_GloballyConstrained.htest/system/Asymptotic/ErrorOrder_2D_EDG_Triangle_AD_btest.cpptest/system/Asymptotic/ErrorOrder_1D_HDG_AD_btest.cpptest/system/Asymptotic/ErrorOrder_1D_HDG_AD_BDF_btest.cpp5ac2439e5deee50f9ad4a96d1e8493b4b6125d831599004858000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMore missing include fixes 2020-09-01 20:00:58 -04005ac2439e5deee50f9ad4a96d1e8493b4b6125d83More missing include fixesedittest/system/Asymptotic/ErrorOrder_1D_HDG_AD_btest.cppedittest/system/Asymptotic/Adjoint2D_HDG_Triangle_AD_mitState_btest.cppeditsrc/LinearAlgebra/AlgebraicEquationSetBase_GloballyConstrained.hedittest/system/Asymptotic/Adjoint2D_HDG_Triangle_AD_sansLG_btest.cppedittest/unit/Discretization/HDG/FunctionalBoundaryTrace_HDG_sansLG_btest.cppedittest/system/Asymptotic/ErrorOrder_1D_HDG_AD_BDF_btest.cppedittest/system/Asymptotic/ErrorOrder_2D_HDG_Triangle_AD_btest.cppedittest/system/Asymptotic/ErrorOrder_2D_EDG_Triangle_AD_btest.cppedittest/system/Asymptotic/ErrorOrder_1D_HDG_Burgers_btest.cppedittest/system/Asymptotic/ErrorOrder_1D_HDGAdvective_Advection_btest.cppsrc/Meshing/EGTess/EGTessModel_aflr4.cppsrc/Meshing/EGADS/EGBody.cppscripts/jenkins/jenkins_env.shCMakeInclude/Checks/aflr_test.cxx66f757ba8d68a2ca87a47b4ba21d8db09afd96051599061481000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpgrade to AFLR 10.8.7 2020-09-02 11:44:41 -040066f757ba8d68a2ca87a47b4ba21d8db09afd9605Upgrade to AFLR 10.8.7editCMakeInclude/Checks/aflr_test.cxxeditscripts/jenkins/jenkins_env.sheditsrc/Meshing/EGTess/EGTessModel_aflr4.cppeditsrc/Meshing/EGADS/EGBody.cppCMakeInclude/Finds/FindAFLR.cmake77357e30bf34ae03cd861ccec41e5ea7d17f3faa1599063123000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdate AFLR libraries 2020-09-02 12:12:03 -040077357e30bf34ae03cd861ccec41e5ea7d17f3faaUpdate AFLR librarieseditCMakeInclude/Finds/FindAFLR.cmaketest/unit/pde/NS/BCRANSSA2D_btest.cpptest/unit/pde/AdvectionDiffusion/BCAdvectionDiffusion2D_btest.cpptest/unit/pde/PorousMedia/BCTwoPhaseArtificialViscosity2D_btest.cpptest/unit/pde/NS/BCEulermitAVSensor1D_btest.cpptest/unit/pde/NS/BCNavierStokes2D_btest.cpptest/unit/pde/Burgers/BCBurgers1D_btest.cpptest/unit/pde/NS/BCEuler2D_btest.cpptest/unit/pde/NS/BCRANSSA3D_mitState_btest.cpptest/unit/pde/Lorenz/BCLorenz_btest.cpptest/unit/pde/PorousMedia/BCTwoPhase2D_btest.cpptest/unit/pde/PorousMedia/BCTwoPhaseLinearized1D_btest.cpptest/unit/pde/IBL/BCIBL2D_btest.cpptest/unit/pde/Sensor/BCSensorParameter1D_btest.cpptest/unit/pde/PorousMedia/BCBuckleyLeverett1D_btest.cpptest/unit/pde/NS/BCNavierStokes3D_mitState_btest.cpptest/unit/pde/PorousMedia/BCTwoPhase1D_btest.cpptest/unit/pde/PorousMedia/BCTwoPhaseArtificialViscosity1D_btest.cpptest/unit/pde/NS/BCEuler3D_mitState_btest.cpptest/unit/pde/NS/BCEuler1D_btest.cpptest/unit/pde/IBL/BCIBLUniField2D_btest.cpptest/unit/pde/NDConvert/BCNDConvert_btest.cpptest/unit/pde/NS/BCEulermitAVSensor2D_btest.cpptest/unit/pde/PorousMedia/BCBuckleyLeverett_ArtificialViscosity1D_btest.cpptest/unit/pde/Burgers/BCBurgers2D_btest.cpptest/unit/pde/Sensor/BCSensorParameter2D_btest.cppc62bc712ac5662b6e87edea02d5db56a756453771599067158000https://acdl.mit.edu/csi/user/blscblscblsc@mit.edusrc/ 2020-09-02 13:19:18 -0400c62bc712ac5662b6e87edea02d5db56a75645377src/edittest/unit/pde/NS/BCNavierStokes2D_btest.cppedittest/unit/pde/PorousMedia/BCTwoPhaseArtificialViscosity2D_btest.cppedittest/unit/pde/NS/BCEuler3D_mitState_btest.cppedittest/unit/pde/NDConvert/BCNDConvert_btest.cppedittest/unit/pde/NS/BCRANSSA3D_mitState_btest.cppedittest/unit/pde/PorousMedia/BCBuckleyLeverett_ArtificialViscosity1D_btest.cppedittest/unit/pde/NS/BCEulermitAVSensor2D_btest.cppedittest/unit/pde/NS/BCEulermitAVSensor1D_btest.cppedittest/unit/pde/IBL/BCIBL2D_btest.cppedittest/unit/pde/Burgers/BCBurgers2D_btest.cppedittest/unit/pde/PorousMedia/BCTwoPhase1D_btest.cppedittest/unit/pde/Lorenz/BCLorenz_btest.cppedittest/unit/pde/AdvectionDiffusion/BCAdvectionDiffusion2D_btest.cppedittest/unit/pde/Burgers/BCBurgers1D_btest.cppedittest/unit/pde/Sensor/BCSensorParameter1D_btest.cppedittest/unit/pde/PorousMedia/BCBuckleyLeverett1D_btest.cppedittest/unit/pde/Sensor/BCSensorParameter2D_btest.cppedittest/unit/pde/IBL/BCIBLUniField2D_btest.cppedittest/unit/pde/NS/BCRANSSA2D_btest.cppedittest/unit/pde/PorousMedia/BCTwoPhase2D_btest.cppedittest/unit/pde/PorousMedia/BCTwoPhaseArtificialViscosity1D_btest.cppedittest/unit/pde/PorousMedia/BCTwoPhaseLinearized1D_btest.cppedittest/unit/pde/NS/BCEuler1D_btest.cppedittest/unit/pde/NS/BCEuler2D_btest.cppedittest/unit/pde/NS/BCNavierStokes3D_mitState_btest.cppsrc/SolutionTrek/Continuation/Homotopy/BCHomotopy.hsrc/pde/ShallowWater/BCShallowWater2D_manifold.hsrc/pde/FullPotential/BCLinearizedIncompressiblePotential2D_sansLG.hsrc/pde/Lorenz/BCLorenz.hsrc/pde/FullPotential/BCLinearizedIncompressiblePotential3D.hsrc/Field/FieldBaseVolume_Instantiate.cppsrc/pde/NDConvert/BCNDConvertSpace2D.hsrc/Field/FieldVolume_CG_InteriorTrace_Instantiate_3D.cppsrc/pde/Sensor/BCSensorParameter1D.hsrc/Discretization/isValidState/isValidStateBoundaryTrace_mitLG.hsrc/pde/NS/BCNavierStokes3D_mitState.hsrc/pde/PorousMedia/BCTwoPhase1D.hsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion1D.hsrc/pde/BCNone.hsrc/pde/IBL/BCIBLSplitAmpLag2D.hsrc/Field/FieldLiftVolume_DG_BoundaryTrace_Instantiate_3D.cppsrc/Discretization/VMSDBR2/AlgebraicEquationSet_VMSD_BR2.hsrc/pde/NS/BCEuler1D.hsrc/pde/NDConvert/BCNDConvertSpace1D.hsrc/Field/FieldVolume_Instantiate_3D.cppsrc/pde/FullPotential/BCLinearizedIncompressiblePotential2D.hsrc/pde/NS/BCEuler2D_mitState.hsrc/Discretization/isValidState/isValidStateBoundaryTrace_sansLG.hsrc/pde/IBL/BCIBLUniField.hsrc/pde/Sensor/BCSensorParameter2D.hsrc/pde/NS/BCEuler3D_mitState.hsrc/pde/NS/BCEuler1D_mitState_ST.hsrc/pde/PorousMedia/BCTwoPhase2D.hsrc/pde/NDConvert/BCNDConvertSpaceTime1D.hsrc/pde/NS/BCNavierStokes2D.hsrc/pde/NS/BCEuler1D_mitState.hsrc/Discretization/isValidState/call_derived_BoundaryState.hsrc/pde/Burgers/BCBurgers1D.hsrc/pde/IBL/BCIBL2D.hsrc/Discretization/isValidState/isValidStateBoundaryTrace_HDG.hsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion3D.hsrc/pde/NDConvert/BCNDConvertSpaceTime2D.hsrc/pde/Burgers/BCmitAVSensorBurgers2D.hsrc/pde/FullPotential/BCFullPotential3D.hsrc/pde/PorousMedia/BCTwoPhaseLinearized1D.hsrc/pde/ShallowWater/BCShallowWater1D.hsrc/pde/HSM/BCHSM2D.hsrc/pde/Stokes/BCStokes2D.hsrc/pde/IBL/BCIBL3D.hsrc/pde/PorousMedia/BCBuckleyLeverett1D.hsrc/pde/NDConvert/BCNDConvertSpace3D.hsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion2D.hsrc/Discretization/isValidState/call_derived_isValidState.hsrc/pde/NDConvert/BCNDConvertSpaceTime3D.hsrc/pde/Burgers/BCmitAVSensorBurgers1D.hsrc/pde/Burgers/BCBurgers2D.hsrc/pde/NS/BCEuler2D_BN.hsrc/pde/ShallowWater/BCShallowWater2D.hsrc/pde/NS/BCEulermitAVSensor3D.cppsrc/pde/NS/BCEuler2D_Dirichlet_sansLG.h39b014fbce4ee526f73a671f99dddeb741c1bbaf1599067323000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduUpdated BC::isValidState interface so mitState BCs can check if the boundary state generated is also valid 2020-09-02 13:22:03 -040039b014fbce4ee526f73a671f99dddeb741c1bbafUpdated BC::isValidState interface so mitState BCs can check if the boundary state generated is also valideditsrc/pde/IBL/BCIBLUniField.heditsrc/Field/FieldVolume_CG_InteriorTrace_Instantiate_3D.cppeditsrc/pde/FullPotential/BCLinearizedIncompressiblePotential3D.heditsrc/pde/PorousMedia/BCTwoPhase1D.heditsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion3D.heditsrc/pde/IBL/BCIBL3D.heditsrc/Discretization/VMSDBR2/AlgebraicEquationSet_VMSD_BR2.heditsrc/pde/Burgers/BCBurgers1D.heditsrc/pde/ShallowWater/BCShallowWater1D.heditsrc/pde/HSM/BCHSM2D.heditsrc/pde/FullPotential/BCLinearizedIncompressiblePotential2D_sansLG.heditsrc/Field/FieldBaseVolume_Instantiate.cppeditsrc/pde/Stokes/BCStokes2D.heditsrc/pde/PorousMedia/BCBuckleyLeverett1D.heditsrc/pde/NDConvert/BCNDConvertSpaceTime2D.heditsrc/pde/ShallowWater/BCShallowWater2D_manifold.heditsrc/pde/Burgers/BCmitAVSensorBurgers1D.heditsrc/pde/NS/BCEuler3D_mitState.heditsrc/Field/FieldLiftVolume_DG_BoundaryTrace_Instantiate_3D.cppeditsrc/Field/FieldVolume_Instantiate_3D.cppeditsrc/SolutionTrek/Continuation/Homotopy/BCHomotopy.heditsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion2D.heditsrc/pde/Sensor/BCSensorParameter1D.heditsrc/pde/FullPotential/BCLinearizedIncompressiblePotential2D.heditsrc/pde/NS/BCNavierStokes2D.heditsrc/pde/Lorenz/BCLorenz.heditsrc/pde/NS/BCNavierStokes3D_mitState.heditsrc/pde/Burgers/BCBurgers2D.heditsrc/pde/IBL/BCIBLSplitAmpLag2D.heditsrc/pde/NS/BCEuler2D_mitState.heditsrc/pde/NDConvert/BCNDConvertSpace3D.heditsrc/pde/NDConvert/BCNDConvertSpace1D.heditsrc/pde/NS/BCEuler1D.heditsrc/pde/Burgers/BCmitAVSensorBurgers2D.heditsrc/pde/NS/BCEulermitAVSensor3D.cppeditsrc/Discretization/isValidState/isValidStateBoundaryTrace_HDG.heditsrc/pde/NS/BCEuler1D_mitState_ST.heditsrc/Discretization/isValidState/isValidStateBoundaryTrace_mitLG.heditsrc/pde/NDConvert/BCNDConvertSpace2D.heditsrc/pde/BCNone.heditsrc/pde/FullPotential/BCFullPotential3D.heditsrc/Discretization/isValidState/call_derived_isValidState.heditsrc/pde/NS/BCEuler2D_Dirichlet_sansLG.heditsrc/pde/Sensor/BCSensorParameter2D.heditsrc/pde/IBL/BCIBL2D.heditsrc/pde/NDConvert/BCNDConvertSpaceTime3D.heditsrc/pde/NS/BCEuler2D_BN.heditsrc/pde/PorousMedia/BCTwoPhase2D.haddsrc/Discretization/isValidState/call_derived_BoundaryState.heditsrc/pde/NS/BCEuler1D_mitState.heditsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion1D.heditsrc/pde/PorousMedia/BCTwoPhaseLinearized1D.heditsrc/pde/NDConvert/BCNDConvertSpaceTime1D.heditsrc/Discretization/isValidState/isValidStateBoundaryTrace_sansLG.heditsrc/pde/ShallowWater/BCShallowWater2D.hsrc/Discretization/isValidState/call_derived_BoundaryState.he3bcdf267488d5a3ca61bc91ce58d3cf9a444b381599067361000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduRemoved file that didn't work out and shouldn't have been commited 2020-09-02 13:22:41 -0400e3bcdf267488d5a3ca61bc91ce58d3cf9a444b38Removed file that didn't work out and shouldn't have been commiteddeletesrc/Discretization/isValidState/call_derived_BoundaryState.hsrc/Meshing/EGTess/EGTessModel_aflr4.cppCMakeInclude/Finds/FindAFLR.cmake922c66c09f39de754acc00562b2ef3d8166879631599077399000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix AFLR library order 2020-09-02 16:09:59 -0400922c66c09f39de754acc00562b2ef3d816687963Fix AFLR library ordereditCMakeInclude/Finds/FindAFLR.cmakeeditsrc/Meshing/EGTess/EGTessModel_aflr4.cppsrc/pde/IBL/BCIBLSplitAmpLag2D.hsrc/pde/NS/PDERANSSA2D.hsrc/pde/FullPotential/BCLinearizedIncompressiblePotential2D_sansLG.hsrc/pde/IBL/BCIBL2D.hsrc/pde/NS/BCEuler1D.hsrc/pde/NDConvert/OutputNDConvertSpaceTime1D.hsrc/Discretization/Galerkin/JacobianCell_Galerkin_Param.hsrc/pde/FullPotential/BCLinearizedIncompressiblePotential2D.hsrc/Field/Element/GalerkinWeightedIntegral_New.hsrc/pde/IBL/BCIBLUniField.hsrc/LinearAlgebra/DenseLinAlg/StaticSize/Documentation/SVD_3x3/svd3.hsrc/pde/NS/BCNavierStokes3D_mitState.hsrc/pde/NS/BCEuler3D_mitState.hsrc/pde/BCNone.hsrc/pde/NS/PDEEuler3D_RotorSource.hsrc/Field/ElementCounter.hsrc/pde/NS/OutputNavierStokes2D.h06cc920dd20936bdc4c71342df3428fa1f63cde41599146613000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduFormatting fixes 2020-09-03 11:23:33 -040006cc920dd20936bdc4c71342df3428fa1f63cde4Formatting fixeseditsrc/LinearAlgebra/DenseLinAlg/StaticSize/Documentation/SVD_3x3/svd3.heditsrc/pde/FullPotential/BCLinearizedIncompressiblePotential2D_sansLG.heditsrc/pde/NS/OutputNavierStokes2D.heditsrc/Field/Element/GalerkinWeightedIntegral_New.heditsrc/pde/BCNone.heditsrc/pde/IBL/BCIBL2D.heditsrc/pde/NS/PDEEuler3D_RotorSource.heditsrc/Discretization/Galerkin/JacobianCell_Galerkin_Param.heditsrc/pde/IBL/BCIBLUniField.heditsrc/pde/NDConvert/OutputNDConvertSpaceTime1D.heditsrc/pde/NS/BCNavierStokes3D_mitState.heditsrc/pde/NS/BCEuler1D.heditsrc/pde/NS/BCEuler3D_mitState.heditsrc/pde/FullPotential/BCLinearizedIncompressiblePotential2D.heditsrc/Field/ElementCounter.heditsrc/pde/NS/PDERANSSA2D.heditsrc/pde/IBL/BCIBLSplitAmpLag2D.hsrc/Discretization/isValidState/isValidStateBoundaryTrace_sansLG.hsrc/pde/NS/BCEuler2D_BN.htest/unit/Discretization/DG/AlgebraicEquationSet_DGBR2_Quad_SA_btest.cpptest/sandbox/Adapt3D_CGStabilized_RANSSA_ArtificialViscosity_ONERA_M6_toy.cpp19c10827a3ec2a8126922021dfdc2bb5fbd0de7f1599188089000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduMissing instantiation and arguments flipped causing a unit test to fail 2020-09-03 22:54:49 -040019c10827a3ec2a8126922021dfdc2bb5fbd0de7fMissing instantiation and arguments flipped causing a unit test to faileditsrc/Discretization/isValidState/isValidStateBoundaryTrace_sansLG.hedittest/unit/Discretization/DG/AlgebraicEquationSet_DGBR2_Quad_SA_btest.cppeditsrc/pde/NS/BCEuler2D_BN.hedittest/sandbox/Adapt3D_CGStabilized_RANSSA_ArtificialViscosity_ONERA_M6_toy.cppsrc/Meshing/EGADS/EGFace.hsrc/Meshing/AFLR/AFLR3.cpptest/system/CodeConsistency/CMakeLists.txtsrc/Meshing/EGTess/EGTessModel_aflr4.cppsrc/Meshing/EGADS/EGEdge.hsrc/Meshing/EGADS/transform.cppsrc/Meshing/EGADS/EGFace.cppsrc/Meshing/EPIC/SolutionField_PX.cppsrc/Meshing/EGADS/EGBody.cppsrc/Meshing/EGADS/EGBody.hsrc/Meshing/EGTess/CMakeLists.txtsrc/Meshing/EPIC/SolutionField_PX.hsrc/Meshing/EGADS/transform.hsrc/Field/NormalField/NormalField_Volume.cppsrc/Meshing/EGADS/EGLoop.cppf1c4fbcc14aa663cc8728f46cbd7f9ec75acf3201599444423000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixes for AFLR4 and EGADS updates 2020-09-06 22:07:03 -0400f1c4fbcc14aa663cc8728f46cbd7f9ec75acf320Fixes for AFLR4 and EGADS updateseditsrc/Meshing/EGADS/EGEdge.hedittest/system/CodeConsistency/CMakeLists.txteditsrc/Meshing/EGADS/EGFace.cppeditsrc/Meshing/EGADS/EGBody.heditsrc/Field/NormalField/NormalField_Volume.cppeditsrc/Meshing/EGADS/EGBody.cppeditsrc/Meshing/EGADS/EGFace.heditsrc/Meshing/EGTess/CMakeLists.txteditsrc/Meshing/EPIC/SolutionField_PX.heditsrc/Meshing/EPIC/SolutionField_PX.cppeditsrc/Meshing/EGADS/transform.heditsrc/Meshing/EGADS/EGLoop.cppeditsrc/Meshing/EGADS/transform.cppeditsrc/Meshing/EGTess/EGTessModel_aflr4.cppeditsrc/Meshing/AFLR/AFLR3.cppsrc/UserInterfaces/capsAIM/intersectWake.cppsrc/Meshing/AFLR/AFLR3.cpptest/unit/Meshing/AFLR/AFLR3_btest.cpp1bf632374d6de19b13b0b571d4c3aed30ce64dc31599490093000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix for wake sheets 2020-09-07 10:48:13 -04001bf632374d6de19b13b0b571d4c3aed30ce64dc3Fix for wake sheetseditsrc/UserInterfaces/capsAIM/intersectWake.cppeditsrc/Meshing/AFLR/AFLR3.cppedittest/unit/Meshing/AFLR/AFLR3_btest.cppsrc/UserInterfaces/capsAIM/capsMesh.cppsrc/Meshing/avro/XField_avro_3D.cppsrc/Field/output_Tecplot/output_Tecplot.cppsrc/Meshing/AFLR/AFLR3.cpptest/system/CodeConsistency/CMakeLists.txtfb9501657f4c2a5854d22b291e1afcdbd61a756f1599791464000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduVarious small fixes 2020-09-10 22:31:04 -0400fb9501657f4c2a5854d22b291e1afcdbd61a756fVarious small fixeseditsrc/Meshing/avro/XField_avro_3D.cppeditsrc/Meshing/AFLR/AFLR3.cppeditsrc/UserInterfaces/capsAIM/capsMesh.cppedittest/system/CodeConsistency/CMakeLists.txtdeletesrc/Field/output_Tecplot/output_Tecplot.cppsrc/Field/XField.hsrc/Field/Partition/XField_Lagrange_Distribute_impl.hsrc/Field/output_Tecplot/output_Tecplot_FieldVolume4.cppsrc/Field/output_Tecplot/output_Tecplot_FieldVolume.cppsrc/Field/output_Tecplot/output_Tecplot_FieldArea.cppsrc/Field/Partition/LagrangeElementGroup.hsrc/Field/Partition/LagrangeElementGroup.cppsrc/Field/Partition/XField_Lagrange_impl.hsrc/Field/XField_impl.hsrc/Field/XFieldSpacetime_buildFrom_impl.htest/unit/Field/XField_Lagrange_btest.cppsrc/Field/XField_BoundaryTrace.hsrc/Field/Partition/XField_Lagrange.hsrc/Field/XFieldVolume_buildFrom_impl.hsrc/Field/XFieldLine_buildFrom_impl.hsrc/Field/Partition/XField_Lagrange_balance_impl.hsrc/Field/output_Tecplot/output_Tecplot_Field_impl.hsrc/Field/XFieldArea_buildFrom_impl.h2aeb1d8f20d9967aa11d3c1a77f26d36cb13b9d11600014231000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAllow specified interior traces 2020-09-13 12:23:51 -04002aeb1d8f20d9967aa11d3c1a77f26d36cb13b9d1Allow specified interior traceseditsrc/Field/Partition/XField_Lagrange_balance_impl.heditsrc/Field/Partition/XField_Lagrange_Distribute_impl.heditsrc/Field/output_Tecplot/output_Tecplot_FieldVolume.cppeditsrc/Field/XFieldArea_buildFrom_impl.heditsrc/Field/Partition/LagrangeElementGroup.heditsrc/Field/XField_BoundaryTrace.heditsrc/Field/XFieldSpacetime_buildFrom_impl.heditsrc/Field/output_Tecplot/output_Tecplot_FieldVolume4.cppedittest/unit/Field/XField_Lagrange_btest.cppeditsrc/Field/Partition/LagrangeElementGroup.cppeditsrc/Field/Partition/XField_Lagrange_impl.heditsrc/Field/output_Tecplot/output_Tecplot_FieldArea.cppeditsrc/Field/XFieldVolume_buildFrom_impl.heditsrc/Field/XField_impl.heditsrc/Field/Partition/XField_Lagrange.heditsrc/Field/XFieldLine_buildFrom_impl.heditsrc/Field/XField.heditsrc/Field/output_Tecplot/output_Tecplot_Field_impl.htest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_Xq.cppsrc/Field/Local/XField_LocalPatch/XField_LocalPatch_impl.htest/sandbox/Adapt2D_DGBR2_BuckleyLeverett_ArtificialViscosity_ST_toy.cppsrc/Field/Local/XField_LocalPatchConstructor/XField_LocalPatchConstructor_impl.htest/unit/Field/Field2D_EG_Triangle_btest.cpptest/unit/Field/Field2D_CG_Triangle_btest.cpptest/unit/UnitGrids/XField2D_Box_UnionJack_Triangle_X1.htest/sandbox/Adapt2D_DGBR2_BuckleyLeverett_ArtificialViscosity_ST_Block2x2_toy.cpptest/unit/UnitGrids/XField2D_Box_UnionJack_Triangle_X1.cpptest/unit/UnitGrids/XField2D_Box_UnionJack_Triangle_X1_btest.cpptest/unit/Field/Field2D_DG_Triangle_btest.cppsrc/Field/Partition/XField_Lagrange_impl.hsrc/Field/Partition/LagrangeElementGroup.hsrc/Field/Field_impl.hsrc/tools/safe_at.hsrc/Meshing/EGTess/EGTessModel.cpptest/unit/Meshing/EGADS/transform_btest.cppe7ae55d2caaaf288ec0211aae1e65d9acbba17d41600114796000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduCompile fixes. Allow UnionJack to work in parallel 2020-09-14 16:19:56 -0400e7ae55d2caaaf288ec0211aae1e65d9acbba17d4Compile fixes. Allow UnionJack to work in paralleleditsrc/Field/Local/XField_LocalPatchConstructor/XField_LocalPatchConstructor_impl.hedittest/unit/UnitGrids/XField2D_Box_UnionJack_Triangle_X1.cppedittest/unit/Field/Field2D_DG_Triangle_btest.cppedittest/unit/UnitGrids/XField2D_Box_UnionJack_Triangle_X1_btest.cppedittest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_Xq.cppedittest/unit/Field/Field2D_EG_Triangle_btest.cppeditsrc/tools/safe_at.hedittest/unit/Field/Field2D_CG_Triangle_btest.cppedittest/sandbox/Adapt2D_DGBR2_BuckleyLeverett_ArtificialViscosity_ST_toy.cppeditsrc/Field/Field_impl.hedittest/unit/UnitGrids/XField2D_Box_UnionJack_Triangle_X1.heditsrc/Field/Local/XField_LocalPatch/XField_LocalPatch_impl.heditsrc/Field/Partition/XField_Lagrange_impl.hedittest/sandbox/Adapt2D_DGBR2_BuckleyLeverett_ArtificialViscosity_ST_Block2x2_toy.cppeditsrc/Field/Partition/LagrangeElementGroup.heditsrc/Meshing/EGTess/EGTessModel.cppedittest/unit/Meshing/EGADS/transform_btest.cppsrc/Field/output_Tecplot/output_Tecplot_FieldVolume.cppc83a94d03058227390fac3d5bbeec1ad70a8f9d41600127364000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix compile error 2020-09-14 19:49:24 -0400c83a94d03058227390fac3d5bbeec1ad70a8f9d4Fix compile erroreditsrc/Field/output_Tecplot/output_Tecplot_FieldVolume.cpptest/sandbox/Solve1D_CG_IncNS1D_Channel_toy.cpp4ab9223395e376f565cd09e32641e4659a06c8391600184973000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduremoved 1D incompressible NS channel flow test case -- won't compile due to double vs VectorS<1> issues; test case is really not needed anyway 2020-09-15 08:49:33 -07004ab9223395e376f565cd09e32641e4659a06c839removed 1D incompressible NS channel flow test case -- won't compile due to doubledeletetest/sandbox/Solve1D_CG_IncNS1D_Channel_toy.cppsrc/pde/NS/OutputEuler2D.hsrc/Field/output_Tecplot/output_Tecplot_FieldLine_1D.cppsrc/Field/Partition/XField_Lagrange_Distribute_impl.htest/sandbox/Adapt2D_VMSDBR2_NavierStokes_ParkMMS_toy.cppsrc/pde/AnalyticFunction/ScalarFunction2D.hsrc/Field/output_Tecplot/output_Tecplot_FieldVolume.cppsrc/pde/NS/SolutionFunction_NavierStokes2D.cppsrc/pde/NS/BCEuler2D_mitState.hsrc/Field/Partition/XField_Lagrange_impl.hsrc/pde/NS/BCEuler2D_Solution.cppsrc/pde/NS/SolutionFunction_NavierStokes2D.hsrc/Field/FieldArea_EG_Cell_impl.hsrc/Field/Partition/XField_Lagrange_balance_impl.hsrc/pde/NS/OutputNavierStokes2D.htest/unit/pde/NS/OutputNavierStokes2D_btest.cppsrc/pde/NS/BCEuler2D_Solution.htest/CMakeLists.txtd7b8f05c6fae2f2c2b767dc49f8c1f37654426901600223670000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixes for parallel specified interior traces. Added ParkMMS and EntropyProduction output. 2020-09-15 22:34:30 -0400d7b8f05c6fae2f2c2b767dc49f8c1f3765442690Fixes for parallel specified interior traces. Added ParkMMS and EntropyProduction output.editsrc/pde/NS/OutputNavierStokes2D.heditsrc/Field/FieldArea_EG_Cell_impl.heditsrc/Field/Partition/XField_Lagrange_impl.hedittest/unit/pde/NS/OutputNavierStokes2D_btest.cppeditsrc/pde/NS/BCEuler2D_mitState.heditsrc/pde/NS/SolutionFunction_NavierStokes2D.heditsrc/pde/AnalyticFunction/ScalarFunction2D.heditsrc/Field/output_Tecplot/output_Tecplot_FieldLine_1D.cppeditsrc/Field/output_Tecplot/output_Tecplot_FieldVolume.cppeditsrc/pde/NS/BCEuler2D_Solution.cppaddtest/sandbox/Adapt2D_VMSDBR2_NavierStokes_ParkMMS_toy.cppeditsrc/pde/NS/SolutionFunction_NavierStokes2D.cppeditsrc/Field/Partition/XField_Lagrange_Distribute_impl.heditsrc/pde/NS/BCEuler2D_Solution.heditsrc/pde/NS/OutputEuler2D.heditsrc/Field/Partition/XField_Lagrange_balance_impl.hedittest/CMakeLists.txtsrc/Adaptation/MOESS/SolverInterface_VMSD_BR2.hsrc/Adaptation/MOESS/SolverInterface.h09aca45ac086895ce41b7992990d23564a94eb301600223955000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduForgot files 2020-09-15 22:39:15 -040009aca45ac086895ce41b7992990d23564a94eb30Forgot fileseditsrc/Adaptation/MOESS/SolverInterface.heditsrc/Adaptation/MOESS/SolverInterface_VMSD_BR2.hsrc/pde/NS/BCEuler2D_mitState.hsrc/Field/Partition/XField_Lagrange_impl.hsrc/Field/Partition/LagrangeElementGroup.cppsrc/Field/Partition/XField_Lagrange_Distribute_impl.hsrc/Field/output_Tecplot/output_Tecplot_FieldVolume.cppsrc/Field/output_Tecplot/output_Tecplot_Field_impl.hsrc/Field/output_Tecplot/output_Tecplot_FieldArea.cpp4955db09ccde4da6e11c125bb254ecc57a8442581600305782000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixes for parallel interior traces 2020-09-16 21:23:02 -04004955db09ccde4da6e11c125bb254ecc57a844258Fixes for parallel interior traceseditsrc/pde/NS/BCEuler2D_mitState.heditsrc/Field/Partition/XField_Lagrange_Distribute_impl.heditsrc/Field/Partition/XField_Lagrange_impl.heditsrc/Field/output_Tecplot/output_Tecplot_FieldArea.cppeditsrc/Field/output_Tecplot/output_Tecplot_FieldVolume.cppeditsrc/Field/Partition/LagrangeElementGroup.cppeditsrc/Field/output_Tecplot/output_Tecplot_Field_impl.hsrc/Discretization/VMSDBR2/AlgebraicEquationSet_VMSD_BR2.h9640d4f03e462fedd84bcd00ed61686e67ad82c81600309538000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix uninitialized data 2020-09-16 22:25:38 -04009640d4f03e462fedd84bcd00ed61686e67ad82c8Fix uninitialized dataeditsrc/Discretization/VMSDBR2/AlgebraicEquationSet_VMSD_BR2.hsrc/tools/safe_at.h08fed0316f14148cc971bbf07cefc7e93903be911600343169000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix intel warning 2020-09-17 07:46:09 -040008fed0316f14148cc971bbf07cefc7e93903be91Fix intel warningeditsrc/tools/safe_at.htest/sandbox/Solve2D_DGBR2_TwoPhase_ArtificialViscosity_SPE10_BDF_toy.cpptest/sandbox/Solve2D_FV_TwoPhase_SPE10_BDF_toy.cpptest/sandbox/Solve2D_FV_TwoPhase_QuarterFiveSpot_BDF_toy.cpptest/sandbox/Adapt3D_DGBR2_TwoPhase_ArtificialViscosity_ST_SPE10_toy.cpp1dcbebe4b83ff328c101b19d25394511166e4b021600354338000https://acdl.mit.edu/csi/user/savithrusavithrusavithru@mit.eduAdded new SPE10 cases for time-marching FV and DGBR2+AV. 2020-09-17 10:52:18 -04001dcbebe4b83ff328c101b19d25394511166e4b02Added new SPE10 cases for time-marching FV and DGBR2+AV.addtest/sandbox/Solve2D_DGBR2_TwoPhase_ArtificialViscosity_SPE10_BDF_toy.cppaddtest/sandbox/Solve2D_FV_TwoPhase_SPE10_BDF_toy.cppedittest/sandbox/Adapt3D_DGBR2_TwoPhase_ArtificialViscosity_ST_SPE10_toy.cppedittest/sandbox/Solve2D_FV_TwoPhase_QuarterFiveSpot_BDF_toy.cppsrc/MPI/continuousElementMap.htest/unit/UnitGrids/XField3D_ForwardStep_Hex_X1.cpptest/unit/UnitGrids/XField2D_Box_Mixed_X1.htest/unit/UnitGrids/XField2D_Box_Mixed_X1.cppsrc/Field/Field_DG_CellBase_impl.htest/unit/UnitGrids/XField2D_Box_Mixed_X1_btest.cppsrc/Field/FieldArea_EG_Cell_impl.htest/unit/UnitGrids/CMakeLists.txttest/unit/Field/Field2D_EG_Triangle_btest.cpp0da811199844978dc418e1d9f1f0bedc8284bd611600377975000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix parallel DG DOF indexing for multiple cell groups 2020-09-17 17:26:15 -04000da811199844978dc418e1d9f1f0bedc8284bd61Fix parallel DG DOF indexing for multiple cell groupsaddtest/unit/UnitGrids/XField2D_Box_Mixed_X1_btest.cppeditsrc/Field/FieldArea_EG_Cell_impl.hedittest/unit/UnitGrids/XField3D_ForwardStep_Hex_X1.cppedittest/unit/UnitGrids/CMakeLists.txtaddtest/unit/UnitGrids/XField2D_Box_Mixed_X1.cppaddtest/unit/UnitGrids/XField2D_Box_Mixed_X1.heditsrc/Field/Field_DG_CellBase_impl.heditsrc/MPI/continuousElementMap.hedittest/unit/Field/Field2D_EG_Triangle_btest.cppsrc/pde/IncompressibleNS/PDEIncompressibleNavierStokes1DChannel.htest/unit/pde/IncompressibleNS/SolutionFunction_IncompressibleRANSSA1DChannel_btest.cppsrc/pde/IncompressibleNS/BCIncompressibleRANSSA1DChannel.hc2df840c3ad9f22efffa3132148b24cc20c344e11600381601000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.edufixes for jenkins squawks 2020-09-17 15:26:41 -0700c2df840c3ad9f22efffa3132148b24cc20c344e1fixes for jenkins squawkseditsrc/pde/IncompressibleNS/BCIncompressibleRANSSA1DChannel.hedittest/unit/pde/IncompressibleNS/SolutionFunction_IncompressibleRANSSA1DChannel_btest.cppeditsrc/pde/IncompressibleNS/PDEIncompressibleNavierStokes1DChannel.hsrc/Field/FieldArea_EG_Cell_impl.hsrc/Field/Field_DG_CellBase_impl.hsrc/Discretization/VMSD/AlgebraicEquationSet_VMSD.h88c75480beaefb708de40b2c12e5036294f9871a1600399370000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix EG zombies 2020-09-17 23:22:50 -040088c75480beaefb708de40b2c12e5036294f9871aFix EG zombieseditsrc/Field/FieldArea_EG_Cell_impl.heditsrc/Field/Field_DG_CellBase_impl.heditsrc/Discretization/VMSD/AlgebraicEquationSet_VMSD.hsrc/pde/IncompressibleNS/PDEIncompressibleNavierStokes1DChannel.hsrc/pde/IncompressibleNS/PDEIncompressibleRANSSA1DChannel.h33fac33856c205c2ea7de47b8cdb01a7ff7f81071600404168000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.edumissing #include <vector> 2020-09-17 21:42:48 -070033fac33856c205c2ea7de47b8cdb01a7ff7f8107missing #include <vector>editsrc/pde/IncompressibleNS/PDEIncompressibleNavierStokes1DChannel.heditsrc/pde/IncompressibleNS/PDEIncompressibleRANSSA1DChannel.htest/sandbox/Solve1D_CG_IncRANSSA1D_Channel_toy.cpp9c28b6db063ee8871a973b424d06f27b4ddde8b61600404416000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.edufixed warning for un-used typedef 2020-09-17 21:46:56 -07009c28b6db063ee8871a973b424d06f27b4ddde8b6fixed warning for un-used typedefedittest/sandbox/Solve1D_CG_IncRANSSA1D_Channel_toy.cppsrc/pde/IncompressibleNS/BCIncompressibleRANSSA1DChannel.h10ff3db512906b3058692f96798ffe5415b7360a1600404835000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduadded isValidState with (x,time,nx,q) params for Dirichlet 2020-09-17 21:53:55 -070010ff3db512906b3058692f96798ffe5415b7360aadded isValidState with (x,time,nx,q) params for Dirichleteditsrc/pde/IncompressibleNS/BCIncompressibleRANSSA1DChannel.hsrc/Meshing/EPIC/SolutionField_PX.cpp133aead8ceadbef0be5fc06afc664d39f77d5bcc1600435339000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduHardening ReadSolution_PX to throw uniformly across MPI if rank 0 fails to load the file. Can now use try catch around restart blocks! 2020-09-18 09:22:19 -0400133aead8ceadbef0be5fc06afc664d39f77d5bccHardening ReadSolution_PX to throw uniformly across MPI if rank 0 fails to load the file. Can now use try catch around restart blocks!editsrc/Meshing/EPIC/SolutionField_PX.cpptest/unit/pde/IncompressibleNS/PDEIncompressibleRANSSA1DChannel_btest.cpp73939872f71e6c9a1193d925f241c2a511a837ab1600459232000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.edufixed uninitialized variables in test 2020-09-18 13:00:32 -070073939872f71e6c9a1193d925f241c2a511a837abfixed uninitialized variables in testedittest/unit/pde/IncompressibleNS/PDEIncompressibleRANSSA1DChannel_btest.cpptest/unit/pde/IncompressibleNS/PDEIncompressibleNavierStokes1DChannel_btest.cpp082bc01d6b1a8f4d2339961f3af68fedee87a24b1600463801000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.eduremoved redundant instantiation 2020-09-18 14:16:41 -0700082bc01d6b1a8f4d2339961f3af68fedee87a24bremoved redundant instantiationedittest/unit/pde/IncompressibleNS/PDEIncompressibleNavierStokes1DChannel_btest.cppsrc/Meshing/EPIC/SolutionField_PX.cppb351042e83bf1d0c2b33af5047342aeabc6166f61600464305000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduremoved unneeded print statements and a typo 2020-09-18 17:25:05 -0400b351042e83bf1d0c2b33af5047342aeabc6166f6removed unneeded print statements and a typoeditsrc/Meshing/EPIC/SolutionField_PX.cpptest/unit/BasisFunction/ReferenceElement_btest.cpptest/system/IO/ErrorEstimates/ErrorEst2D_HDG_L_AD_FullTest.txtf6574035cf628d49de3e610cf46304497597918d1600480159000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduNightly fixes 2020-09-18 21:49:19 -0400f6574035cf628d49de3e610cf46304497597918dNightly fixesedittest/system/IO/ErrorEstimates/ErrorEst2D_HDG_L_AD_FullTest.txtedittest/unit/BasisFunction/ReferenceElement_btest.cppsrc/Field/FieldLine_EG_Cell_impl.hsrc/Field/Partition/XField_Lagrange_impl.hsrc/Field/FieldSpacetime_EG_Cell_impl.hsrc/Field/FieldVolume_EG_Cell_impl.hsrc/Field/Partition/XField_Lagrange_Distribute_impl.hsrc/Field/FieldArea_EG_Cell_impl.hsrc/Discretization/Galerkin/ExtractCGLocalBoundaries/ExtractCGLocalBoundaries_impl.h4126a36ef2df37fed3626b79759f6e4dd3e701131600481789000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduVarious small fixes 2020-09-18 22:16:29 -04004126a36ef2df37fed3626b79759f6e4dd3e70113Various small fixeseditsrc/Field/FieldLine_EG_Cell_impl.heditsrc/Field/Partition/XField_Lagrange_impl.heditsrc/Field/FieldVolume_EG_Cell_impl.heditsrc/Field/FieldSpacetime_EG_Cell_impl.heditsrc/Discretization/Galerkin/ExtractCGLocalBoundaries/ExtractCGLocalBoundaries_impl.heditsrc/Field/Partition/XField_Lagrange_Distribute_impl.heditsrc/Field/FieldArea_EG_Cell_impl.hsrc/Meshing/EPIC/SolutionField_PX.cpp5ae6e94f560e8d6d265e277bc5846e45a0b8f1611600539250000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduFix to erroneous logic 2020-09-19 14:14:10 -04005ae6e94f560e8d6d265e277bc5846e45a0b8f161Fix to erroneous logiceditsrc/Meshing/EPIC/SolutionField_PX.cppsrc/tools/safe_at.h851b81df5137be291bf923fe3a59fe241c7809d11600539281000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduMake safe_at work for any container type, and reduce code duplication 2020-09-19 14:14:41 -0400851b81df5137be291bf923fe3a59fe241c7809d1Make safe_at work for any container type, and reduce code duplicationeditsrc/tools/safe_at.hsrc/LinearAlgebra/DenseLinAlg/tools/Identity.htest/unit/UnitGrids/XField3D_ForwardStep_Hex_X1.cpptest/unit/UnitGrids/XField2D_ForwardStep_Quad_X1.cpptest/unit/Field/XField_Lagrange_btest.cpptest/unit/Discretization/VMSDBR2/CMakeLists.txte3af87ee0b5493a4f45a85a420a505aeb5293f111600617538000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduNightly fixes 2020-09-20 11:58:58 -0400e3af87ee0b5493a4f45a85a420a505aeb5293f11Nightly fixesedittest/unit/Field/XField_Lagrange_btest.cppedittest/unit/Discretization/VMSDBR2/CMakeLists.txtedittest/unit/UnitGrids/XField3D_ForwardStep_Hex_X1.cppeditsrc/LinearAlgebra/DenseLinAlg/tools/Identity.hedittest/unit/UnitGrids/XField2D_ForwardStep_Quad_X1.cpptest/unit/Field/FieldDataMatrixD_TraceLift_btest.cpptest/system/IO/ErrorEstimates/ErrorEst2D_HDG_L_AD_FullTest.txttest/system/Asymptotic/CMakeLists.txtscripts/jenkins/jenkins_env.shtest/unit/Field/FieldDataMatrixD_CellLift_btest.cpp4af7dc0ac770ae44d943f1ac90a04f68d0c9e11b1600617550000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMore nightly fixes 2020-09-20 11:59:10 -04004af7dc0ac770ae44d943f1ac90a04f68d0c9e11bMore nightly fixeseditscripts/jenkins/jenkins_env.shedittest/unit/Field/FieldDataMatrixD_CellLift_btest.cppedittest/system/IO/ErrorEstimates/ErrorEst2D_HDG_L_AD_FullTest.txtedittest/system/Asymptotic/CMakeLists.txtedittest/unit/Field/FieldDataMatrixD_TraceLift_btest.cpptest/unit/pde/IncompressibleNS/PDEIncompressibleRANSSA1DChannel_btest.cpp0fcbc772021ff6cf570c7f7cf85fecd68f8371f01600708148000https://acdl.mit.edu/csi/user/allmarasallmarasallmaras@mit.edufixed nightly warning on unused variable 2020-09-21 10:09:08 -07000fcbc772021ff6cf570c7f7cf85fecd68f8371f0fixed nightly warning on unused variableedittest/unit/pde/IncompressibleNS/PDEIncompressibleRANSSA1DChannel_btest.cpptest/system/CodeConsistency/CMakeLists.txtd2e4f470fb5667c043285e7a790271cea912bd5c1600779019000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduRelax execution time 2020-09-22 08:50:19 -0400d2e4f470fb5667c043285e7a790271cea912bd5cRelax execution timeedittest/system/CodeConsistency/CMakeLists.txtsrc/Discretization/isValidState/isValidStateCell_VMSD.hsrc/Discretization/isValidState/isValidStateInteriorTrace_VMSD.h45741c8a4bfb59b17ad86a38f8fb67e02fb2c4051600960238000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduChanged isValid to check: qbar + qp at cell quads, and qbar, qbar + qpL and qbar + qpR for interior traces. These are the only values used in flux evaluation 2020-09-24 11:10:38 -040045741c8a4bfb59b17ad86a38f8fb67e02fb2c405Changed isValid to check: qbar + qp at cell quads, and qbar, qbar + qpL and qbar + qpR for interior traces. These are the only values used in flux evaluationeditsrc/Discretization/isValidState/isValidStateInteriorTrace_VMSD.heditsrc/Discretization/isValidState/isValidStateCell_VMSD.htest/system/Asymptotic/ErrorOrder_3D_CG_Hex_AD_btest.cppsrc/MPI/continuousElementMap.htest/unit/Discretization/VMSDBR2/JacobianCell_VMSD_BR2_AD_btest.cppsrc/Meshing/AFLR/AFLR3.cpptest/unit/Discretization/DG/JacobianBoundaryTrace_Dirichlet_mitState_DGBR2_AD_btest.cpptest/unit/UnitGrids/XField3D_Box_Hex_X1_btest.cppsrc/tools/BackTraceException.cppsrc/Field/Partition/XField_Lagrange_Distribute_impl.hsrc/SolutionTrek/Continuation/PseudoTime/AlgebraicEquationSet_PTC.htest/unit/UnitGrids/XField3D_ForwardStep_Hex_X1_btest.cpptest/unit/Field/DistanceFunction_btest.cpptest/unit/UnitGrids/XField2D_Box_Triangle_Lagrange_X1.cpptest/unit/Field/XField3D_Curved_Hex_btest.cppsrc/MPI/operations.htest/unit/Field/Field3D_CG_Hexahedron_btest.cpptest/unit/Discretization/VMSDBR2/JacobianBoundaryTrace_Dirichlet_mitState_VMSDBR2_AD_btest.cppsrc/Field/Partition/LagrangeElementGroup.cppsrc/Field/Partition/LagrangeElementGroup.hsrc/tools/CMakeLists.txttest/unit/Field/XField3D_Curved_Tet_btest.cpptest/unit/UnitGrids/XField4D_Box_Ptope_X1_btest.cpptest/unit/Meshing/AFLR/AFLR3_btest.cpptest/unit/Meshing/AFLR/CMakeLists.txtsrc/SolutionTrek/Continuation/PseudoTime/AlgebraicEquationSet_PTC_VMSD.hsrc/SolutionTrek/Continuation/ImplicitResidualSmoothing/AlgebraicEquationSet_IRS.htest/unit/UnitGrids/XField3D_GaussianBump_Xq_btest.cpptest/system/Asymptotic/ErrorOrder_3D_DGBR2_Periodic_Hex_AD_btest.cppscripts/vera/exclusions.txttest/system/LocalSolve/LocalSolve3D_Split_HDG_Tet_AD_btest.cppsrc/Python/InputException.cppsrc/Field/output_Tecplot/output_Tecplot_FieldVolume.cpptest/unit/UnitGrids/XField2D_Box_UnionJack_Triangle_X1.cpptest/unit/Field/Field3D_CG_Tetrahedron_btest.cppsrc/Field/XField_BoundaryTrace_impl.htest/system/LocalSolve/LocalSolve3D_HDG_Tet_AD_btest.cpptest/unit/Discretization/DG/JacobianInteriorTrace_DGBR2_AD_btest.cpptest/unit/Discretization/HDG/JacobianInteriorTrace_HDG_AD_btest.cpptest/system/Asymptotic/ErrorOrder_3D_DGBR2_Tet_AD_btest.cpptest/unit/Discretization/DG/JacobianBoundaryTrace_LinearScalar_sansLG_DGBR2_AD_btest.cppsrc/Field/Partition/XField_Lagrange_balance_impl.htest/unit/UnitGrids/XField3D_Box_Tet_X1_btest.cppsrc/Field/NormalField/NormalField_Volume.cppsrc/Meshing/AFLR/AFLR3.htest/system/Asymptotic/ErrorOrder_3D_CG_Tet_AD_btest.cppb895e60cb03b868b5c8cc2c071a96c27e80b7d1a1601077567000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix accross spelling. Fix AFLR3 to distribute in parallel. Update interior trace parallel construction. 2020-09-25 19:46:07 -0400b895e60cb03b868b5c8cc2c071a96c27e80b7d1aFix accross spelling. Fix AFLR3 to distribute in parallel. Update interior trace parallel construction.editsrc/Meshing/AFLR/AFLR3.cppedittest/unit/Field/Field3D_CG_Tetrahedron_btest.cppedittest/unit/Discretization/VMSDBR2/JacobianCell_VMSD_BR2_AD_btest.cppeditsrc/Field/Partition/XField_Lagrange_Distribute_impl.hedittest/system/Asymptotic/ErrorOrder_3D_CG_Tet_AD_btest.cppedittest/unit/Discretization/VMSDBR2/JacobianBoundaryTrace_Dirichlet_mitState_VMSDBR2_AD_btest.cppedittest/system/Asymptotic/ErrorOrder_3D_DGBR2_Periodic_Hex_AD_btest.cppeditsrc/MPI/operations.hedittest/unit/Meshing/AFLR/AFLR3_btest.cppeditscripts/vera/exclusions.txtedittest/unit/UnitGrids/XField3D_ForwardStep_Hex_X1_btest.cppedittest/system/LocalSolve/LocalSolve3D_HDG_Tet_AD_btest.cppeditsrc/Field/Partition/LagrangeElementGroup.cppeditsrc/Python/InputException.cppedittest/unit/Field/Field3D_CG_Hexahedron_btest.cppeditsrc/SolutionTrek/Continuation/PseudoTime/AlgebraicEquationSet_PTC.hedittest/unit/Discretization/DG/JacobianBoundaryTrace_Dirichlet_mitState_DGBR2_AD_btest.cppedittest/unit/UnitGrids/XField2D_Box_Triangle_Lagrange_X1.cppedittest/unit/UnitGrids/XField4D_Box_Ptope_X1_btest.cppeditsrc/Field/XField_BoundaryTrace_impl.heditsrc/SolutionTrek/Continuation/ImplicitResidualSmoothing/AlgebraicEquationSet_IRS.heditsrc/tools/CMakeLists.txtedittest/unit/Field/XField3D_Curved_Tet_btest.cppeditsrc/SolutionTrek/Continuation/PseudoTime/AlgebraicEquationSet_PTC_VMSD.hedittest/system/LocalSolve/LocalSolve3D_Split_HDG_Tet_AD_btest.cppeditsrc/Field/output_Tecplot/output_Tecplot_FieldVolume.cppedittest/unit/UnitGrids/XField2D_Box_UnionJack_Triangle_X1.cppedittest/unit/UnitGrids/XField3D_Box_Tet_X1_btest.cppedittest/unit/Field/XField3D_Curved_Hex_btest.cppedittest/system/Asymptotic/ErrorOrder_3D_CG_Hex_AD_btest.cppedittest/system/Asymptotic/ErrorOrder_3D_DGBR2_Tet_AD_btest.cppeditsrc/MPI/continuousElementMap.hedittest/unit/Field/DistanceFunction_btest.cppeditsrc/Meshing/AFLR/AFLR3.hedittest/unit/Discretization/DG/JacobianBoundaryTrace_LinearScalar_sansLG_DGBR2_AD_btest.cppedittest/unit/Discretization/DG/JacobianInteriorTrace_DGBR2_AD_btest.cppeditsrc/Field/Partition/XField_Lagrange_balance_impl.hedittest/unit/Meshing/AFLR/CMakeLists.txtedittest/unit/UnitGrids/XField3D_GaussianBump_Xq_btest.cppeditsrc/tools/BackTraceException.cppedittest/unit/UnitGrids/XField3D_Box_Hex_X1_btest.cppeditsrc/Field/Partition/LagrangeElementGroup.hedittest/unit/Discretization/HDG/JacobianInteriorTrace_HDG_AD_btest.cppeditsrc/Field/NormalField/NormalField_Volume.cpptest/system/CodeConsistency/PDESourceOnly_Projection_btest.cppe9198e0ad7af383a78e9d59991a23776388932ab1601135391000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduReduce maximum grid size for PDESourceOnly_Projection_btest 2020-09-26 11:49:51 -0400e9198e0ad7af383a78e9d59991a23776388932abReduce maximum grid size for PDESourceOnly_Projection_btestedittest/system/CodeConsistency/PDESourceOnly_Projection_btest.cppCMakeInclude/Builds/BuildPETSC.cmake77529dccbc1efa436b704e13b5e623592ed509201601137706000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdd latest PETSc version 2020-09-26 12:28:26 -040077529dccbc1efa436b704e13b5e623592ed50920Add latest PETSc versioneditCMakeInclude/Builds/BuildPETSC.cmaketest/system/IO/ErrorEstimates/ErrorEst2D_HDG_L_AD_FullTest.txt100ef1a5f57db2c996467914876088374c5609fc1601227946000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduNightly fix 2020-09-27 13:32:26 -0400100ef1a5f57db2c996467914876088374c5609fcNightly fixedittest/system/IO/ErrorEstimates/ErrorEst2D_HDG_L_AD_FullTest.txtCMakeInclude/Finds/FindSUITESPARSE.cmakeCMakeInclude/Builds/BuildTETGEN.cmakeCMakeInclude/Builds/BuildPARMETIS.cmakeCMakeInclude/Finds/FindAVRO.cmakeCMakeInclude/MakeSummaryFile.cmakeCMakeInclude/Builds/BuildSUITESPARSE.cmake1f3ba0f4019b73520aa91a1696b4b36a9ec8de211601261965000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduVarious CMake fixes 2020-09-27 22:59:25 -04001f3ba0f4019b73520aa91a1696b4b36a9ec8de21Various CMake fixeseditCMakeInclude/Finds/FindSUITESPARSE.cmakeeditCMakeInclude/Builds/BuildTETGEN.cmakeeditCMakeInclude/Builds/BuildPARMETIS.cmakeeditCMakeInclude/Finds/FindAVRO.cmakeeditCMakeInclude/MakeSummaryFile.cmakeeditCMakeInclude/Builds/BuildSUITESPARSE.cmakeCMakeInclude/Builds/BuildTETGEN.cmake422573980ea5ca6bb499c868f0b2764a4bca90d41601298925000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix for building Tetgen 2020-09-28 09:15:25 -0400422573980ea5ca6bb499c868f0b2764a4bca90d4Fix for building TetgeneditCMakeInclude/Builds/BuildTETGEN.cmakeCMakeInclude/Builds/BuildTETGEN.cmake9d34fd8e4d241dab0ed4004498add60f25c4cf5c1601307679000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduDon't ues intel compiler to compile TetGen 2020-09-28 11:41:19 -04009d34fd8e4d241dab0ed4004498add60f25c4cf5cDon't ues intel compiler to compile TetGeneditCMakeInclude/Builds/BuildTETGEN.cmaketest/system/IO/ErrorEstimates/ErrorEst_2D_DGAdvective_AD_FullTest.txt927f343e09770907d8e437546b48c47912c7c5901601385482000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduNightly fix 2020-09-29 09:18:02 -0400927f343e09770907d8e437546b48c47912c7c590Nightly fixedittest/system/IO/ErrorEstimates/ErrorEst_2D_DGAdvective_AD_FullTest.txttest/system/Asymptotic/ErrorEstimateOrder_2D_DGAdvective_Triangle_AD_btest.cpp4b752ee25e4fe2f6af3e0aea95de070416edad6b1601427100000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduRelax tolerance for nightly test 2020-09-29 20:51:40 -04004b752ee25e4fe2f6af3e0aea95de070416edad6bRelax tolerance for nightly testedittest/system/Asymptotic/ErrorEstimateOrder_2D_DGAdvective_Triangle_AD_btest.cppscripts/jenkins/SANS_Nightly.shCMakeInclude/Builds/BuildREFINE.cmakesrc/Field/NormalField/NormalField.hsrc/Python/Parameter.cppsrc/Meshing/EGADS/CMakeLists.txtsrc/Meshing/EGADS/Airfoils/CubicCamber.cppsrc/Meshing/EGADS/Airfoils/CamberBlade.hsrc/Meshing/EGADS/Airfoils/MeanlineBlade.htest/unit/Field/NormalField_btest.cpptest/unit/Meshing/EGADS/CamberBlade_btest.cppsrc/Meshing/EGADS/Airfoils/MeanlineBlade.cppsrc/Meshing/refine/refine_defs.hCMakeInclude/Finds/FindPARMETIS.cmakeCMakeInclude/Checks/aflr_test.cxxtest/unit/Python/Parameters_btest.cppsrc/Python/PyDict.hscripts/jenkins/jenkins_env.shsrc/Python/ExtractParam.cppsrc/Meshing/EGADS/Airfoils/CubicCamber.htest/unit/Meshing/EGADS/CMakeLists.txtsrc/Python/PyDict.cppsrc/Meshing/refine/XField_refine.cpptest/unit/Python/PyDict_btest.cppsrc/tools/Type2String.hsrc/Python/Parameter.hsrc/Meshing/TetGen/EGTetGen.cppsrc/Python/PyDict_impl.htest/unit/Meshing/EGADS/MeanlineBlade_btest.cppsrc/Meshing/EGADS/Airfoils/CamberBlade.cppsrc/Meshing/TetGen/makeTetGenModel.cppCMakeInclude/Builds/BuildTETGEN.cmakesrc/Meshing/EGADS/Airfoils/CubicCamber.nbsrc/Field/NormalField/NormalField_Volume.cppCMakeInclude/Dependencies.cmakesrc/Python/InputException.hsrc/Meshing/EGADS/revolve.h2e510f9c97d6f1ba80d42524141f9bfbbf44a69c1601438355000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdate refine, TetGen, and AFLR. Added ParameterDictList for a list of dictionaries. Rename MeanlineBlade to CamberBlade. 2020-09-29 23:59:15 -04002e510f9c97d6f1ba80d42524141f9bfbbf44a69cUpdate refine, TetGen, and AFLR. Added ParameterDictList for a list of dictionaries. Rename MeanlineBlade to CamberBlade.editsrc/Field/NormalField/NormalField_Volume.cppeditsrc/Meshing/TetGen/makeTetGenModel.cppaddsrc/Meshing/EGADS/Airfoils/CubicCamber.nbeditCMakeInclude/Builds/BuildTETGEN.cmakedeletesrc/Meshing/EGADS/Airfoils/MeanlineBlade.cppeditsrc/Python/Parameter.cppeditsrc/Meshing/refine/refine_defs.heditsrc/Meshing/refine/XField_refine.cppeditsrc/Meshing/EGADS/CMakeLists.txteditscripts/jenkins/jenkins_env.shedittest/unit/Python/PyDict_btest.cppaddtest/unit/Meshing/EGADS/CamberBlade_btest.cppeditsrc/Meshing/EGADS/Airfoils/CubicCamber.heditsrc/Python/PyDict.cppeditsrc/Python/ExtractParam.cppedittest/unit/Meshing/EGADS/CMakeLists.txteditCMakeInclude/Finds/FindPARMETIS.cmakeeditsrc/Meshing/TetGen/EGTetGen.cppeditsrc/Python/Parameter.heditscripts/jenkins/SANS_Nightly.sheditCMakeInclude/Checks/aflr_test.cxxeditCMakeInclude/Dependencies.cmakeeditsrc/Python/PyDict_impl.hdeletetest/unit/Meshing/EGADS/MeanlineBlade_btest.cppeditsrc/Field/NormalField/NormalField.heditsrc/tools/Type2String.heditsrc/Python/InputException.heditsrc/Meshing/EGADS/Airfoils/CubicCamber.cppaddsrc/Meshing/EGADS/Airfoils/CamberBlade.heditCMakeInclude/Builds/BuildREFINE.cmakeeditsrc/Python/PyDict.hedittest/unit/Python/Parameters_btest.cppeditsrc/Meshing/EGADS/revolve.hedittest/unit/Field/NormalField_btest.cppaddsrc/Meshing/EGADS/Airfoils/CamberBlade.cppdeletesrc/Meshing/EGADS/Airfoils/MeanlineBlade.hscripts/jenkins/jenkins_env.sh6ab1096b842dfdd8c209fe2e66657cb0126e6f1a1601473155000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduCorrect AFLR version 2020-09-30 09:39:15 -04006ab1096b842dfdd8c209fe2e66657cb0126e6f1aCorrect AFLR versioneditscripts/jenkins/jenkins_env.shCMakeInclude/Builds/tetgen-predicates.patche5a2cace4afec067e4e8e35c8b32c618870404b01601473646000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduForgot tetgen patch 2020-09-30 09:47:26 -0400e5a2cace4afec067e4e8e35c8b32c618870404b0Forgot tetgen patchaddCMakeInclude/Builds/tetgen-predicates.patchtest/unit/Discretization/GloballyConstrained/Ping_Euler_RotorSource_btest.cpptest/unit/Field/CMakeLists.txtsrc/Adaptation/MOESS/ErrorModel/ErrorModel_impl.htest/unit/Field/NormalField_btest.cppsrc/Meshing/ugrid/WriteMesh_ugrid.cppsrc/Meshing/EGADS/Airfoils/CamberBlade.cpptest/unit/Meshing/AFLR/AFLR3_btest.cpptest/CMakeLists.txtsrc/Meshing/EGADS/Airfoils/CamberBlade.h7a432d30e853c887809988f73d59f982696a243f1601522870000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduVarious fixes 2020-09-30 23:27:50 -04007a432d30e853c887809988f73d59f982696a243fVarious fixeseditsrc/Meshing/EGADS/Airfoils/CamberBlade.hedittest/CMakeLists.txtedittest/unit/Discretization/GloballyConstrained/Ping_Euler_RotorSource_btest.cppedittest/unit/Meshing/AFLR/AFLR3_btest.cppedittest/unit/Field/CMakeLists.txtedittest/unit/Field/NormalField_btest.cppeditsrc/Adaptation/MOESS/ErrorModel/ErrorModel_impl.heditsrc/Meshing/EGADS/Airfoils/CamberBlade.cppeditsrc/Meshing/ugrid/WriteMesh_ugrid.cpptest/unit/Field/CMakeLists.txt8d3a4f1834d8558c4b0a0df7218a1cc5c5fc3dcf1601555387000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix library order 2020-10-01 08:29:47 -04008d3a4f1834d8558c4b0a0df7218a1cc5c5fc3dcfFix library orderedittest/unit/Field/CMakeLists.txttest/unit/Discretization/GloballyConstrained/Ping_Euler_RotorSource_btest.cppe8c0a8d866fb08b19d28a55e5e802d647ccfecd81601564673000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduRelax ping tolerance 2020-10-01 11:04:33 -0400e8c0a8d866fb08b19d28a55e5e802d647ccfecd8Relax ping toleranceedittest/unit/Discretization/GloballyConstrained/Ping_Euler_RotorSource_btest.cpptest/unit/Meshing/AFLR/AFLR3_btest.cpp841f82c067471952b1e0d2409e17e340c975614c1601574507000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduComment out file dump 2020-10-01 13:48:27 -0400841f82c067471952b1e0d2409e17e340c975614cComment out file dumpedittest/unit/Meshing/AFLR/AFLR3_btest.cppsrc/Adaptation/MOESS/ErrorModel/ErrorModel_impl.htest/system/Asymptotic/ErrorOrder_2D_DGAdvective_Circle_Line_ShallowWater_btest.cpptest/system/Asymptotic/ErrorEstimateOrder_2D_CG_Nodal_Triangle_AD_btest.cppsrc/Adaptation/MOESS/NodalMetrics/NodalMetrics_impl.hCMakeInclude/Builds/BuildREFINE.cmaketest/unit/Meshing/refine/refine3D_btest.cppCMakeInclude/Builds/BuildTETGEN.cmakesrc/Meshing/gmsh/WriteMesh_gmsh.cppe71bd65a2f38ce42be5b2c423cf4fe0bfbd89d151601652942000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduNightly fixes 2020-10-02 11:35:42 -0400e71bd65a2f38ce42be5b2c423cf4fe0bfbd89d15Nightly fixesedittest/unit/Meshing/refine/refine3D_btest.cppeditsrc/Meshing/gmsh/WriteMesh_gmsh.cppeditsrc/Adaptation/MOESS/NodalMetrics/NodalMetrics_impl.heditsrc/Adaptation/MOESS/ErrorModel/ErrorModel_impl.heditCMakeInclude/Builds/BuildTETGEN.cmakeedittest/system/Asymptotic/ErrorOrder_2D_DGAdvective_Circle_Line_ShallowWater_btest.cppeditCMakeInclude/Builds/BuildREFINE.cmakeedittest/system/Asymptotic/ErrorEstimateOrder_2D_CG_Nodal_Triangle_AD_btest.cppsrc/NonLinearSolver/LineUpdate/LineUpdate.hsrc/UserInterfaces/PythonUI/PySANS_Euler_BodyForce.cppsrc/UserInterfaces/PythonUI/CMakeLists.txtsrc/Python/PyDict.cppsrc/Meshing/EGADS/Airfoils/CamberBlade.cppsrc/SolutionTrek/Continuation/PseudoTime/PseudoTime.hsrc/Meshing/EGADS/Airfoils/CamberBlade.h494c1d1594f871f8991cd60ad4515c9513c5b3791601676833000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdd python UI for body force calculations. 2020-10-02 18:13:53 -0400494c1d1594f871f8991cd60ad4515c9513c5b379Add python UI for body force calculations.editsrc/Meshing/EGADS/Airfoils/CamberBlade.heditsrc/SolutionTrek/Continuation/PseudoTime/PseudoTime.heditsrc/NonLinearSolver/LineUpdate/LineUpdate.heditsrc/UserInterfaces/PythonUI/CMakeLists.txteditsrc/Python/PyDict.cppeditsrc/Meshing/EGADS/Airfoils/CamberBlade.cppaddsrc/UserInterfaces/PythonUI/PySANS_Euler_BodyForce.cppsrc/UserInterfaces/PythonUI/PySANS_Euler_BodyForce.cppcf1b0bb1c3a861a855248b155d860803b09e5c211601684133000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix compile errors 2020-10-02 20:15:33 -0400cf1b0bb1c3a861a855248b155d860803b09e5c21Fix compile errorseditsrc/UserInterfaces/PythonUI/PySANS_Euler_BodyForce.cppsrc/UserInterfaces/PythonUI/PySANS_Euler_BodyForce.cpp196cec41f7efb7e047148e7c061923b9411af6e21601684391000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix warning 2020-10-02 20:19:51 -0400196cec41f7efb7e047148e7c061923b9411af6e2Fix warningeditsrc/UserInterfaces/PythonUI/PySANS_Euler_BodyForce.cppsrc/UserInterfaces/PythonUI/PySANS_Euler_BodyForce.cppsrc/UserInterfaces/PythonUI/CMakeLists.txtCMakeInclude/Builds/BuildPARMETIS.cmakee0704b1874c0b8447bf96a495d69ba00b01282b91601835274000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduVarious compile fixes 2020-10-04 14:14:34 -0400e0704b1874c0b8447bf96a495d69ba00b01282b9Various compile fixeseditsrc/UserInterfaces/PythonUI/PySANS_Euler_BodyForce.cppeditsrc/UserInterfaces/PythonUI/CMakeLists.txteditCMakeInclude/Builds/BuildPARMETIS.cmakeCMakeInclude/Dependencies.cmakesrc/UserInterfaces/PythonUI/PySANS_Euler_BodyForce.cpp1f60c7495f096dd0b5fa22fc0fd9df470256bc2c1601835544000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduSome small fixes 2020-10-04 14:19:04 -04001f60c7495f096dd0b5fa22fc0fd9df470256bc2cSome small fixeseditCMakeInclude/Dependencies.cmakeeditsrc/UserInterfaces/PythonUI/PySANS_Euler_BodyForce.cppsrc/Field/Partition/LagrangeElementGroup.cppsrc/Field/Partition/XField_Lagrange_impl.htest/sandbox/Adapt2D_DGBR2_Burgers_ST_toy.cpptest/sandbox/Adapt2D_DGBR2_Euler_ArtNozzle_AV_ST_toy.cppsrc/UserInterfaces/PythonUI/CMakeLists.txttest/sandbox/Adapt2D_DGBR2_Burgers_ArtificialViscosity_ST_toy.cppsrc/Field/Partition/XField_Lagrange_balance_impl.h0964e38b5feda8523e150885c90c618e96b6a6f51601855690000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix interior trace partitioning 2020-10-04 19:54:50 -04000964e38b5feda8523e150885c90c618e96b6a6f5Fix interior trace partitioningeditsrc/Field/Partition/LagrangeElementGroup.cppedittest/sandbox/Adapt2D_DGBR2_Burgers_ArtificialViscosity_ST_toy.cppeditsrc/Field/Partition/XField_Lagrange_impl.hedittest/sandbox/Adapt2D_DGBR2_Euler_ArtNozzle_AV_ST_toy.cppeditsrc/Field/Partition/XField_Lagrange_balance_impl.heditsrc/UserInterfaces/PythonUI/CMakeLists.txtedittest/sandbox/Adapt2D_DGBR2_Burgers_ST_toy.cppsrc/Meshing/EGADS/Airfoils/CamberBlade.cppsrc/Field/output_Tecplot/output_Tecplot_FieldVolume.cpptest/unit/Meshing/AFLR/AFLR3_btest.cppsrc/UserInterfaces/PythonUI/PySANS_Euler_BodyForce.cppsrc/Meshing/EGADS/Airfoils/CamberBlade.hca22eab5402c716f3d9e383628d8b28ddc7f99a61601917113000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduSome small fixes 2020-10-05 12:58:33 -0400ca22eab5402c716f3d9e383628d8b28ddc7f99a6Some small fixeseditsrc/Field/output_Tecplot/output_Tecplot_FieldVolume.cppeditsrc/Meshing/EGADS/Airfoils/CamberBlade.cppeditsrc/UserInterfaces/PythonUI/PySANS_Euler_BodyForce.cppeditsrc/Meshing/EGADS/Airfoils/CamberBlade.hedittest/unit/Meshing/AFLR/AFLR3_btest.cpptest/sandbox/Solve2D_DGBR2_TwoPhase_ArtificialViscosity_SPE10_BDF_toy.cppsrc/pde/PorousMedia/SourceTwoPhase2D.htest/sandbox/Solve2D_FV_TwoPhase_SPE10_BDF_toy.cppsrc/pde/PorousMedia/SourceTwoPhase2D.cpptest/sandbox/Adapt3D_DGBR2_TwoPhase_ArtificialViscosity_ST_SPE10_toy.cpp7f7580c8789bbadf6ae2481e789f1b21de31e5861601929200000https://acdl.mit.edu/csi/user/savithrusavithrusavithru@mit.eduAdded the option to specify a reference permeability for the well model. Updated SPE10 test cases to use the permeabilities at the well locations. 2020-10-05 16:20:00 -04007f7580c8789bbadf6ae2481e789f1b21de31e586Added the option to specify a reference permeability for the well model. Updated SPE10 test cases to use the permeabilities at the well locations.editsrc/pde/PorousMedia/SourceTwoPhase2D.heditsrc/pde/PorousMedia/SourceTwoPhase2D.cppedittest/sandbox/Solve2D_FV_TwoPhase_SPE10_BDF_toy.cppedittest/sandbox/Solve2D_DGBR2_TwoPhase_ArtificialViscosity_SPE10_BDF_toy.cppedittest/sandbox/Adapt3D_DGBR2_TwoPhase_ArtificialViscosity_ST_SPE10_toy.cppsrc/Discretization/Galerkin/IntegrandCell_Galerkin_manifold_IBL3D.h13c2bc754d39437080b9ded7c59ca25d5d37700b1602032227000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduWeekly fix 2020-10-06 20:57:07 -040013c2bc754d39437080b9ded7c59ca25d5d37700bWeekly fixeditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_manifold_IBL3D.hgithttps://acdl.mit.edu/csi/user/blscblscblschttps://acdl.mit.edu/csi/user/vpr11vpr11vpr11https://acdl.mit.edu/csi/user/savithrusavithrusavithruhttps://acdl.mit.edu/csi/user/ksaboksaboksabohttps://acdl.mit.edu/csi/user/hcarsonhcarsonhcarsonhttps://acdl.mit.edu/csi/user/galbramcgalbramcgalbramchttps://acdl.mit.edu/csi/user/allmarasallmarasallmarashttps://acdl.mit.edu/csi/user/shunzshunzshunzStarted by upstream project "SANS_Weekly" build number 270270SANS_Weeklyjob/SANS_Weekly/false#2702053730347191SANS_Weekly ยป debug_clang,reynolds #270270falsefalse27076023ABORTED1602362602425https://acdl.mit.edu/csi/job/SANS_Weekly/builddir=debug_clang,buildnode=reynolds/270/reynoldsStarted by upstream project "SANS_Weekly" build number 270270SANS_Weeklyjob/SANS_Weekly/false#2702089530541023SANS_Weekly ยป debug_gnu5,reynolds 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up potential flow 2018-05-13 11:06:42 -04008af37a9cc1806b6a846aa0f4b7ddd3c91b5d809eCleaning up potential 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fixes 2018-05-13 11:07:25 -0400e6d96edd24ebe2f991f9ee549302a92545e580a6Minor fixeseditsrc/UserInterfaces/capsAIM/markWakeEdges.cppeditsrc/Field/Partition/XField_Lagrange.cppsrc/UserInterfaces/LIPSolver.hsrc/pde/FullPotential/OutputLIP3D.hsrc/UserInterfaces/LIPSolver.cppsrc/pde/FullPotential/PDELinearizedIncompressiblePotential3D.htest/sandbox/Solve3D_CG_NACA_LIP_Drela_toy.cppf2785ee420d588ab1a555512d39e3f96cc07e7501526269197000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduWorking on stability derivatives 2018-05-13 23:39:57 -0400f2785ee420d588ab1a555512d39e3f96cc07e750Working on stability 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derivatives for LIPeditsrc/UserInterfaces/LIPSolver.cppeditsrc/pde/NDConvert/OutputNDConvertSpace3D.heditsrc/pde/FullPotential/BCLinearizedIncompressiblePotential3D.cppeditsrc/Discretization/Galerkin/IntegrateBoundaryTrace_Dispatch_Galerkin.heditsrc/pde/FullPotential/LinearizedIncompressiblePotential3D_Trefftz.heditsrc/Discretization/Galerkin/IntegrandBoundaryTrace_Output_Galerkin.heditsrc/pde/FullPotential/OutputLIP3D.heditsrc/pde/FullPotential/PDELinearizedIncompressiblePotential3D.heditsrc/Discretization/Potential_Drela/ResidualParamSensitivity_CG_Potential_Drela.htest/unit/pde/FullPotential/OutputLIP3D_btest.cppsrc/pde/FullPotential/LinearizedIncompressiblePotential3D_Trefftz.hsrc/UserInterfaces/LIPSolver.cppf21fbfcfbc2b0b9b68d5c9888fe59eabc5b14a1c1526355857000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMore work on stability derivatives 2018-05-14 23:44:17 -0400f21fbfcfbc2b0b9b68d5c9888fe59eabc5b14a1cMore work on stability derivativesedittest/unit/pde/FullPotential/OutputLIP3D_btest.cppeditsrc/UserInterfaces/LIPSolver.cppeditsrc/pde/FullPotential/LinearizedIncompressiblePotential3D_Trefftz.hsrc/pde/FullPotential/BCLinearizedIncompressiblePotential3D.cpptest/unit/pde/FullPotential/LinearizedIncompressiblePotential3D_Trefftz_btest.cpp919344e40abcb1c3c4959df72d309a726082f9611526386636000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed instantiation 2018-05-15 08:17:16 -0400919344e40abcb1c3c4959df72d309a726082f961Fixed instantiationedittest/unit/pde/FullPotential/LinearizedIncompressiblePotential3D_Trefftz_btest.cppeditsrc/pde/FullPotential/BCLinearizedIncompressiblePotential3D.cpptest/unit/Discretization/CG/ResidualParamSensitivity_CG_Triangle_AD_btest.cppsrc/LinearAlgebra/AlgebraicEquationSetBase.htest/system/Asymptotic/Adjoint2D_CG_Triangle_AD_btest.cppsrc/SolutionTrek/Continuation/Homotopy/AlgebraicEquationSet_HTC.htest/unit/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Triangle_AD_btest.cpptest/unit/Discretization/HDG/AlgebraicEquationSet_EDG_Triangle_AD_btest.cppsrc/SolutionTrek/Continuation/PseudoTime/AlgebraicEquationSet_PTC.htest/unit/Discretization/HDG/AlgebraicEquationSet_HDG_Triangle_AD_btest.cppsrc/Discretization/AlgebraicEquationSet_Debug.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized_LiftedBoundary.hsrc/Discretization/Block/AlgebraicEquationSet_Block4x4_impl.hsrc/Discretization/DG/AlgebraicEquationSet_Local_DG.hsrc/PanelMethod/XfoilPanelEquationSet.hsrc/Discretization/Block/AlgebraicEquationSet_Block4x4.htest/unit/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized_Triangle_AD_btest.cppsrc/Discretization/HDG/AlgebraicEquationSet_HDG.hsrc/Discretization/DG/AlgebraicEquationSet_Local_DG_impl.hsrc/SolutionTrek/TimeMarching/AlgebraicEquationSet_TimeMarch.hsrc/PanelMethod/AlgebraicEquationSet_ProjectToQauxi.hsrc/Discretization/Potential_Drela/AlgebraicEquationSet_CG_Potential_Drela.hsrc/PanelMethod/XfoilPanelEquationSet.cpptest/unit/LinearAlgebra/Advection1D_btest.hsrc/LinearAlgebra/VectorType.hsrc/Discretization/DG/AlgebraicEquationSet_DGBR2_impl.hsrc/SolutionTrek/TimeMarching/AlgebraicEquationSet_TimeStep.hsrc/LinearAlgebra/AlgebraicEquationSet_Traits.hsrc/Discretization/Block/AlgebraicEquationSet_Block2x2_impl.htest/sandbox/Solve2D_CG_NACABTE_IPTF_toy.cppsrc/Discretization/HDG/AlgebraicEquationSet_Local_HDG.hsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective_impl.hsrc/LinearAlgebra/SparseLinAlg/Preconditioners/LU_SGS_impl.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Project.hsrc/SolutionTrek/Continuation/ImplicitResidualSmoothing/AlgebraicEquationSet_IRS.hsrc/Discretization/DG/AlgebraicEquationSet_DGBR2.hsrc/pde/IBL/AlgebraicEquationSet_ProjectToQauxv_PanelMethod.htest/system/AnalyticSolve/AnalyticSolve2D_HDG_Triangle_NavierStokes_UniformStream_btest.cppsrc/Discretization/FV_TPFA/AlgebraicEquationSet_FV_TPFA.hsrc/Discretization/Galerkin/AlgebraicEquationSet_HubTrace_Galerkin.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized.hsrc/Discretization/Block/AlgebraicEquationSet_Block2x2.hsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.htest/sandbox/Solve2D_CG_NACA_IPTF_toy.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block2x2_Triangle_AD_btest.cpptest/unit/LinearAlgebra/Heat1D_btest.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin.hsrc/SolutionTrek/Continuation/DissipationBased/AlgebraicEquationSet_DBC.hsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective.hf2dad7c7da8ebf344b9c56e025239afbf23742531526407343000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduChanged vectors to vector view in algebraic equation sets 2018-05-15 14:02:23 -0400f2dad7c7da8ebf344b9c56e025239afbf2374253Changed vectors to vector view in algebraic equation setseditsrc/SolutionTrek/TimeMarching/AlgebraicEquationSet_TimeMarch.heditsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective.hedittest/unit/Discretization/CG/ResidualParamSensitivity_CG_Triangle_AD_btest.cppeditsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized_LiftedBoundary.hedittest/unit/LinearAlgebra/Advection1D_btest.heditsrc/SolutionTrek/Continuation/PseudoTime/AlgebraicEquationSet_PTC.heditsrc/LinearAlgebra/VectorType.heditsrc/Discretization/Block/AlgebraicEquationSet_Block2x2_impl.heditsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.hedittest/unit/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized_Triangle_AD_btest.cppeditsrc/Discretization/Block/AlgebraicEquationSet_Block2x2.heditsrc/Discretization/DG/AlgebraicEquationSet_Local_DG.heditsrc/Discretization/DG/AlgebraicEquationSet_DGBR2.heditsrc/pde/IBL/AlgebraicEquationSet_ProjectToQauxv_PanelMethod.heditsrc/Discretization/Block/AlgebraicEquationSet_Block4x4_impl.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.hedittest/sandbox/Solve2D_CG_NACABTE_IPTF_toy.cppedittest/system/AnalyticSolve/AnalyticSolve2D_HDG_Triangle_NavierStokes_UniformStream_btest.cppeditsrc/Discretization/HDG/AlgebraicEquationSet_HDG.heditsrc/LinearAlgebra/AlgebraicEquationSet_Traits.hedittest/sandbox/Solve2D_CG_NACA_IPTF_toy.cppedittest/unit/Discretization/Block/AlgebraicEquationSet_Block2x2_Triangle_AD_btest.cppeditsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective_impl.hedittest/unit/LinearAlgebra/Heat1D_btest.heditsrc/LinearAlgebra/SparseLinAlg/Preconditioners/LU_SGS_impl.hedittest/system/Asymptotic/Adjoint2D_CG_Triangle_AD_btest.cppedittest/unit/Discretization/HDG/AlgebraicEquationSet_HDG_Triangle_AD_btest.cppeditsrc/Discretization/DG/AlgebraicEquationSet_Local_DG_impl.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized.heditsrc/Discretization/DG/AlgebraicEquationSet_DGBR2_impl.heditsrc/SolutionTrek/TimeMarching/AlgebraicEquationSet_TimeStep.heditsrc/Discretization/AlgebraicEquationSet_Debug.heditsrc/LinearAlgebra/AlgebraicEquationSetBase.heditsrc/PanelMethod/XfoilPanelEquationSet.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin.hedittest/unit/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Triangle_AD_btest.cppeditsrc/PanelMethod/XfoilPanelEquationSet.cppedittest/unit/Discretization/HDG/AlgebraicEquationSet_EDG_Triangle_AD_btest.cppeditsrc/Discretization/FV_TPFA/AlgebraicEquationSet_FV_TPFA.heditsrc/Discretization/HDG/AlgebraicEquationSet_Local_HDG.heditsrc/Discretization/Block/AlgebraicEquationSet_Block4x4.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_HubTrace_Galerkin.heditsrc/SolutionTrek/Continuation/DissipationBased/AlgebraicEquationSet_DBC.heditsrc/SolutionTrek/Continuation/Homotopy/AlgebraicEquationSet_HTC.heditsrc/SolutionTrek/Continuation/ImplicitResidualSmoothing/AlgebraicEquationSet_IRS.heditsrc/PanelMethod/AlgebraicEquationSet_ProjectToQauxi.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Project.heditsrc/Discretization/Potential_Drela/AlgebraicEquationSet_CG_Potential_Drela.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixS_Instantiate.cpptest/unit/LinearAlgebra/CustomJacobianEqSet_btest.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETSc_VectorSize_impl.ha1113b445be052542d575077835dc33be9226cc51526440390000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduPETSc updates with Vector View 2018-05-15 23:13:10 -0400a1113b445be052542d575077835dc33be9226cc5PETSc updates with Vector Vieweditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixS_Instantiate.cppedittest/unit/LinearAlgebra/CustomJacobianEqSet_btest.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETSc_VectorSize_impl.hsrc/LinearAlgebra/AlgebraicEquationSetBase.hsrc/SolutionTrek/Continuation/Homotopy/AlgebraicEquationSet_HTC.hsrc/Discretization/Block/JacobianParam_Decoupled.hsrc/SolutionTrek/Continuation/PseudoTime/AlgebraicEquationSet_PTC.hsrc/Discretization/AlgebraicEquationSet_Debug.hsrc/Discretization/JacobianParamBase.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized_LiftedBoundary.hsrc/Discretization/DG/AlgebraicEquationSet_Local_DG.hsrc/PanelMethod/XfoilPanelEquationSet.hsrc/PanelMethod/JacobianParam_PanelEqn_Qauxi.hsrc/Discretization/DG/AlgebraicEquationSet_Local_DG_impl.hsrc/Discretization/JacobianParam_impl.hsrc/Discretization/HDG/AlgebraicEquationSet_HDG.hsrc/SolutionTrek/TimeMarching/AlgebraicEquationSet_TimeMarch.hsrc/Discretization/Potential_Drela/AlgebraicEquationSet_CG_Potential_Drela.htest/unit/LinearAlgebra/Advection1D_btest.htest/unit/LinearAlgebra/CustomJacobianEqSet_btest.hsrc/LinearAlgebra/MatrixViewType.hsrc/Discretization/DG/AlgebraicEquationSet_DGBR2_impl.hsrc/SolutionTrek/TimeMarching/AlgebraicEquationSet_TimeStep.hsrc/LinearAlgebra/AlgebraicEquationSet_Traits.htest/sandbox/Solve2D_CG_NACABTE_IPTF_toy.cppsrc/Discretization/HDG/AlgebraicEquationSet_Local_HDG.hsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective_impl.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Project.hsrc/SolutionTrek/Continuation/ImplicitResidualSmoothing/AlgebraicEquationSet_IRS.hsrc/Discretization/DG/AlgebraicEquationSet_DGBR2.hsrc/Discretization/FV_TPFA/AlgebraicEquationSet_FV_TPFA.hsrc/Discretization/Galerkin/AlgebraicEquationSet_HubTrace_Galerkin.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized.hsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.htest/sandbox/Solve2D_CG_NACA_IPTF_toy.cppsrc/Discretization/JacobianParam_Local.hsrc/pde/IBL/JacobianParam_ProjectToQauxi_Qauxv.htest/unit/LinearAlgebra/Heat1D_btest.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.hsrc/pde/IBL/JacobianParam_ProjectToQauxi_QIBL.hsrc/pde/IBL/JacobianParam_ProjectToQauxv_Qinv.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin.hsrc/Discretization/JacobianParam.hsrc/LinearAlgebra/NonZeroPatternType.hsrc/SolutionTrek/Continuation/DissipationBased/AlgebraicEquationSet_DBC.hsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective.h8502974746daa38bb633635c44a61fbb9dcf63a01526519102000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdated Matrix View for algebraic equation sets as well 2018-05-16 21:05:02 -04008502974746daa38bb633635c44a61fbb9dcf63a0Updated Matrix View for algebraic equation sets as welledittest/sandbox/Solve2D_CG_NACA_IPTF_toy.cppeditsrc/pde/IBL/JacobianParam_ProjectToQauxv_Qinv.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin.heditsrc/Discretization/JacobianParam_Local.heditsrc/SolutionTrek/Continuation/PseudoTime/AlgebraicEquationSet_PTC.heditsrc/Discretization/AlgebraicEquationSet_Debug.heditsrc/Discretization/FV_TPFA/AlgebraicEquationSet_FV_TPFA.haddsrc/LinearAlgebra/MatrixViewType.heditsrc/SolutionTrek/Continuation/Homotopy/AlgebraicEquationSet_HTC.heditsrc/Discretization/Potential_Drela/AlgebraicEquationSet_CG_Potential_Drela.heditsrc/Discretization/DG/AlgebraicEquationSet_Local_DG_impl.heditsrc/Discretization/JacobianParam.heditsrc/LinearAlgebra/NonZeroPatternType.heditsrc/Discretization/DG/AlgebraicEquationSet_Local_DG.heditsrc/SolutionTrek/Continuation/DissipationBased/AlgebraicEquationSet_DBC.heditsrc/SolutionTrek/TimeMarching/AlgebraicEquationSet_TimeStep.hedittest/unit/LinearAlgebra/CustomJacobianEqSet_btest.heditsrc/Discretization/DG/AlgebraicEquationSet_DGBR2.heditsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.heditsrc/Discretization/Block/JacobianParam_Decoupled.heditsrc/Discretization/JacobianParamBase.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.heditsrc/Discretization/DG/AlgebraicEquationSet_DGBR2_impl.heditsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective.heditsrc/PanelMethod/XfoilPanelEquationSet.heditsrc/Discretization/JacobianParam_impl.hedittest/unit/LinearAlgebra/Advection1D_btest.heditsrc/pde/IBL/JacobianParam_ProjectToQauxi_Qauxv.heditsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective_impl.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized_LiftedBoundary.heditsrc/PanelMethod/JacobianParam_PanelEqn_Qauxi.heditsrc/LinearAlgebra/AlgebraicEquationSetBase.hedittest/sandbox/Solve2D_CG_NACABTE_IPTF_toy.cppedittest/unit/LinearAlgebra/Heat1D_btest.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized.heditsrc/Discretization/HDG/AlgebraicEquationSet_HDG.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_HubTrace_Galerkin.heditsrc/Discretization/HDG/AlgebraicEquationSet_Local_HDG.heditsrc/SolutionTrek/TimeMarching/AlgebraicEquationSet_TimeMarch.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Project.heditsrc/pde/IBL/JacobianParam_ProjectToQauxi_QIBL.heditsrc/LinearAlgebra/AlgebraicEquationSet_Traits.heditsrc/SolutionTrek/Continuation/ImplicitResidualSmoothing/AlgebraicEquationSet_IRS.hsrc/UserInterfaces/capsAIM/CMakeLists.txtb9e65fec20824ecee7dc941092c4d5e2357600a21526740267000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMinimize dependencies for LIP aim 2018-05-19 10:31:07 -0400b9e65fec20824ecee7dc941092c4d5e2357600a2Minimize dependencies for LIP aimeditsrc/UserInterfaces/capsAIM/CMakeLists.txtsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_impl.hsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_factorize.hsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver.htest/unit/LinearAlgebra/SparseLinAlg/LinearSolver_btest.cppsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver.cppbfa106832b329fa5bca39c0aefbdbfaade013b881526860269000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded timings for UMFPACK 2018-05-20 19:51:09 -0400bfa106832b329fa5bca39c0aefbdbfaade013b88Added timings for UMFPACKeditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver.heditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_impl.hedittest/unit/LinearAlgebra/SparseLinAlg/LinearSolver_btest.cppeditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver.cppeditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_factorize.hsrc/UserInterfaces/LIPSolver.hsrc/UserInterfaces/capsAIM/sansLIPAIM.cppsrc/UserInterfaces/LIPSolver.cpp615773e647c71e4da57ed3f7b2958098290179511526869396000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpates to sensitvity calculations 2018-05-20 22:23:16 -0400615773e647c71e4da57ed3f7b295809829017951Upates to sensitvity calculationseditsrc/UserInterfaces/LIPSolver.heditsrc/UserInterfaces/LIPSolver.cppeditsrc/UserInterfaces/capsAIM/sansLIPAIM.cppgithttps://acdl.mit.edu/csi/user/galbramcgalbramcStarted by upstream project "SANS_Weekly" build number 233233SANS_Weeklyjob/SANS_Weekly/0096testReportfalse#2334833351033375740SANS_Weekly ยป debug_intel18,reynolds #233233falsefalse23354996SUCCESS1549090327511https://acdl.mit.edu/csi/job/SANS_Weekly/builddir=debug_intel18,buildnode=reynolds/233/reynoldssrc/pde/NS/PDEEulermitAVDiffusion2D.h7f3962937dca65f62e24ab2971167effad3c2f461527729868000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduAdded H tensor output from Euler2D 2018-05-30 19:24:28 -06007f3962937dca65f62e24ab2971167effad3c2f46Added H tensor output from Euler2Deditsrc/pde/NS/PDEEulermitAVDiffusion2D.hsrc/Meshing/EGTess/EGTessModel_aflr4.cppsrc/Meshing/AFLR/AFLR3.cppCMakeInclude/Finds/FindAFLR.cmakeCMakeInclude/Checks/aflr_test.cxxf563c698756c6eb1123706467837afef009acb811528223924000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduWorking on new AFLR4 interface 2018-06-05 14:38:44 -0400f563c698756c6eb1123706467837afef009acb81Working on new AFLR4 interfaceeditsrc/Meshing/AFLR/AFLR3.cppeditsrc/Meshing/EGTess/EGTessModel_aflr4.cppeditCMakeInclude/Checks/aflr_test.cxxeditCMakeInclude/Finds/FindAFLR.cmaketest/sandbox/Adapt2D_DGBR2_RANSSA_FlatPlate_toy.cppe3d6dcdca580abc7320871f3f0535c49af8552f91528315219000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edusome tweaks 2018-06-06 16:00:19 -0400e3d6dcdca580abc7320871f3f0535c49af8552f9some tweaksedittest/sandbox/Adapt2D_DGBR2_RANSSA_FlatPlate_toy.cpptest/sandbox/Adapt2D_DGBR2_RANSSA_FlatPlate_toy.cpp1d263e2d966af7879c27dd8104b6fb504cb23a521528476379000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edutweaks 2018-06-08 12:46:19 -04001d263e2d966af7879c27dd8104b6fb504cb23a52tweaksedittest/sandbox/Adapt2D_DGBR2_RANSSA_FlatPlate_toy.cppsrc/Meshing/EGTess/EGTessModel_aflr4.cppCMakeInclude/Finds/FindAFLR.cmaketest/unit/Meshing/AFLR/AFLR3_btest.cpp15c1426999d0a1fcd00aa998222a55f83d7563921528550125000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduDebugging AFLR4 2018-06-09 09:15:25 -040015c1426999d0a1fcd00aa998222a55f83d756392Debugging AFLR4editsrc/Meshing/EGTess/EGTessModel_aflr4.cppedittest/unit/Meshing/AFLR/AFLR3_btest.cppeditCMakeInclude/Finds/FindAFLR.cmaketest/sandbox/Adapt2D_DGBR2_RANSSA_FlatPlate_toy.cppfe60e7318129b134c60ac70155aeafbbd68246a31528806539000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduremoving erroneous refine things 2018-06-12 08:28:59 -0400fe60e7318129b134c60ac70155aeafbbd68246a3removing erroneous refine thingsedittest/sandbox/Adapt2D_DGBR2_RANSSA_FlatPlate_toy.cppCMakeInclude/Finds/FindEGADS.cmakeCMakeInclude/Builds/BuildPETSC.cmakeCMakeInclude/Checks/CheckREFINE.cmakeCMakeInclude/Dependencies.cmakeCMakeInclude/Finds/FindREFINE.cmakeCMakeInclude/Builds/BuildREFINE.cmake149f12134ba4ae56cb1c90611a686a7645d1634a1528806754000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edugetting acdl develop CMakeIncludes 2018-06-12 08:32:34 -0400149f12134ba4ae56cb1c90611a686a7645d1634agetting acdl develop CMakeIncludeseditCMakeInclude/Checks/CheckREFINE.cmakeeditCMakeInclude/Finds/FindREFINE.cmakeeditCMakeInclude/Finds/FindEGADS.cmakeeditCMakeInclude/Builds/BuildPETSC.cmakeaddCMakeInclude/Builds/BuildREFINE.cmakeeditCMakeInclude/Dependencies.cmaketest/sandbox/Adapt2D_DGBR2_RANSSA_FlatPlate_toy.cppe8817adf58fd1b1900ba67411c23a90c29f506ed1528806774000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumore tweaks 2018-06-12 08:32:54 -0400e8817adf58fd1b1900ba67411c23a90c29f506edmore tweaksedittest/sandbox/Adapt2D_DGBR2_RANSSA_FlatPlate_toy.cpptest/sandbox/Adapt2D_DGBR2_RANSSA_FlatPlate_toy.cpp24ab416a6e823de9d76befd21443874de39d5af51528809937000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumoving to hypersonic 2018-06-12 09:25:37 -040024ab416a6e823de9d76befd21443874de39d5af5moving to hypersonicedittest/sandbox/Adapt2D_DGBR2_RANSSA_FlatPlate_toy.cpptest/sandbox/Adapt2D_DGBR2_RANSSA_FlatPlate_toy.cppe3ebb3f0c7041824d057390be8b49f592256da9b1528810548000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educhange to let MPI build the directories just in time 2018-06-12 09:35:48 -0400e3ebb3f0c7041824d057390be8b49f592256da9bchange to let MPI build the directories just in timeedittest/sandbox/Adapt2D_DGBR2_RANSSA_FlatPlate_toy.cpptest/sandbox/Adapt2D_DGBR2_RANSSA_FlatPlate_toy.cppe154e5e008c88eb1e3de7b12e15c325a4c3ed8a11528810617000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edutoo many white lines 2018-06-12 09:36:57 -0400e154e5e008c88eb1e3de7b12e15c325a4c3ed8a1too many white linesedittest/sandbox/Adapt2D_DGBR2_RANSSA_FlatPlate_toy.cpptest/sandbox/Adapt2D_DGBR2_NavierStokes_FlatPlate_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cppb568d38fe85cb10fc568afee34dede845dc19d1f1528911117000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduto run on devastator 2018-06-13 13:31:57 -0400b568d38fe85cb10fc568afee34dede845dc19d1fto run on devastatoredittest/sandbox/Adapt2D_DGBR2_NavierStokes_FlatPlate_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cpptest/sandbox/Adapt2D_DGBR2_RANSSA_FlatPlate_toy.cppda90675f4de25ffa8af9024887f3e09c88b90aaf1528912274000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edutweaks for hypersonic 2018-06-13 13:51:14 -0400da90675f4de25ffa8af9024887f3e09c88b90aaftweaks for hypersonicedittest/sandbox/Adapt2D_DGBR2_RANSSA_FlatPlate_toy.cpptest/unit/ErrorEstimate/ErrorEstimateNodal_Galerkin_AD_btest.cppsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.hsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.hbdb26494c805be76f547a3b8ef3201513517fcca1528920236000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduNodal Error estimate. Takes the average of the attached nodes, the estimation happens using the weak form directly 2018-06-13 16:03:56 -0400bdb26494c805be76f547a3b8ef3201513517fccaNodal Error estimate. Takes the average of the attached nodes, the estimation happens using the weak form directlyaddtest/unit/ErrorEstimate/ErrorEstimateNodal_Galerkin_AD_btest.cppaddsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.haddsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized.hsrc/ErrorEstimate/ErrorEstimate_fwd.hsrc/Adaptation/MOESS/SolverInterface_Nodal_Galerkin.htest/sandbox/Adapt2D_Galerkin_Stabilized_Poisson_toy.cpp6bd3507494944f1bc8e9189e18d10ec7b6beb22b1528921870000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduhacking about trying Nodal Estimation 2018-06-13 16:31:10 -04006bd3507494944f1bc8e9189e18d10ec7b6beb22bhacking about trying Nodal Estimationaddsrc/Adaptation/MOESS/SolverInterface_Nodal_Galerkin.hedittest/sandbox/Adapt2D_Galerkin_Stabilized_Poisson_toy.cppeditsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized.heditsrc/ErrorEstimate/ErrorEstimate_fwd.hsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.h38318eea3f13e2271f889851b661ce1f7129acfd1528978461000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edutypo/bug maybe? 2018-06-14 08:14:21 -040038318eea3f13e2271f889851b661ce1f7129acfdtypo/bug maybe?editsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.hsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.hf45684f9b62753b8e189a5fb336f9de627884a581528979615000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduanother one 2018-06-14 08:33:35 -0400f45684f9b62753b8e189a5fb336f9de627884a58another oneeditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.htest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.hsrc/Adaptation/MOESS/SolverInterface.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.htest/sandbox/Adapt2D_Galerkin_Stabilized_Poisson_toy.cppsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.h7a05e1017aadf78f6d7439e462cbc4122c28d7721528995664000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edupre merge 2018-06-14 13:01:04 -04007a05e1017aadf78f6d7439e462cbc4122c28d772pre mergeeditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.hedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_Poisson_toy.cppeditsrc/Adaptation/MOESS/SolverInterface.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.heditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.htest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cpp30fd8d2a1b83df1b3ad1fabcae4762ca688fe92b1529058570000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduMultiscale metric case, debugging printing a continuous Mach number field 2018-06-15 06:29:30 -040030fd8d2a1b83df1b3ad1fabcae4762ca688fe92bMultiscale metric case, debugging printing a continuous Mach number fieldaddtest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppsrc/ErrorEstimate/Galerkin/ErrorEstimate_StrongForm_Galerkin.hsrc/Adaptation/MOESS/SolverInterface_DGAdvective.h035379d445956a947ba072e91d14f0c913b052e01529058767000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edupre merge 2018-06-15 06:32:47 -0400035379d445956a947ba072e91d14f0c913b052e0pre mergeeditsrc/Adaptation/MOESS/SolverInterface_DGAdvective.heditsrc/ErrorEstimate/Galerkin/ErrorEstimate_StrongForm_Galerkin.htest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cpp72733f21df4a27dd02c08dc6ffbfac23983370781529071695000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduforgot to assert the basis was the same for the two fields 2018-06-15 10:08:15 -040072733f21df4a27dd02c08dc6ffbfac2398337078forgot to assert the basis was the same for the two fieldsedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppa0d695ca843c7ef57a820f10ef4c48f88aedfb9f1529072425000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduprojects from the Dfld basis onto the Cfld basis so accumulating to the dofs is consistent now 2018-06-15 10:20:25 -0400a0d695ca843c7ef57a820f10ef4c48f88aedfb9fprojects from the Dfld basis onto the Cfld basis so accumulating to the dofs is consistent nowedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppsrc/ErrorEstimate/Galerkin/ErrorEstimate_StrongForm_Galerkin.h3b0d3d2ab172a45fd51a8a5a132a9f80ea5161c41529241229000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edupre merge 2018-06-17 09:13:49 -04003b0d3d2ab172a45fd51a8a5a132a9f80ea5161c4pre mergeeditsrc/ErrorEstimate/Galerkin/ErrorEstimate_StrongForm_Galerkin.htest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cpp84e3b4954944a4814ca80a8a62ee96e288ccc0311529242304000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduseems to write Mach number solbs now 2018-06-17 09:31:44 -040084e3b4954944a4814ca80a8a62ee96e288ccc031seems to write Mach number solbs nowedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cpp932b952e1c67742c5192e0f41a6c142bac336b8e1529242813000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumoving to hypersonic 2018-06-17 09:40:13 -0400932b952e1c67742c5192e0f41a6c142bac336b8emoving to hypersonicedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.h4c97e7280c8f85b8ed87fa36c6adf6b9a3dc74061529243111000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edua fix to go to hypersonic 2018-06-17 09:45:11 -04004c97e7280c8f85b8ed87fa36c6adf6b9a3dc7406a fix to go to hypersoniceditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.htest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppe00fe2c429f1521d6d59f682599d840ab640cc931529266046000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduweird tecplot bug 2018-06-17 16:07:26 -0400e00fe2c429f1521d6d59f682599d840ab640cc93weird tecplot bugedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.hsrc/Adaptation/MOESS/SolverInterface_Nodal_Galerkin.htest/sandbox/Adapt2D_Galerkin_Stabilized_Poisson_toy.cppsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.h8719f043d911c5ab1b744fdc0ba472ae0bda8c2d1529353060000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educompiles again, moving to devastator 2018-06-18 16:17:40 -04008719f043d911c5ab1b744fdc0ba472ae0bda8c2dcompiles again, moving to devastatoreditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.hedittest/sandbox/Adapt2D_Galerkin_Stabilized_Poisson_toy.cppeditsrc/Adaptation/MOESS/SolverInterface_Nodal_Galerkin.heditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.htest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cpp05a545a4edd487cff6c5fea07138534e8d8066f31529422055000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduMultiScaleMetric for transfering to NASA 2018-06-19 11:27:35 -040005a545a4edd487cff6c5fea07138534e8d8066f3MultiScaleMetric for transfering to NASAedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cpp61db27fc494c3ce64ab6a5327dc0cd606f8bf2ca1529442509000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumoving to laptop 2018-06-19 17:08:29 -040061db27fc494c3ce64ab6a5327dc0cd606f8bf2camoving to laptopedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.hsrc/Adaptation/MOESS/SolverInterface_Nodal_Galerkin.hsrc/Adaptation/MOESS/SolverInterface.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.hsrc/Adaptation/MOESS/SolverInterface_Galerkin.hsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.hbe2a3ebb3aaa5fee74c75b15a1e1c2613c906b9a1529605048000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edutransfering to Dev 2018-06-21 14:17:28 -0400be2a3ebb3aaa5fee74c75b15a1e1c2613c906b9atransfering to Deveditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.heditsrc/Adaptation/MOESS/SolverInterface_Galerkin.heditsrc/Adaptation/MOESS/SolverInterface_Nodal_Galerkin.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.heditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.heditsrc/Adaptation/MOESS/SolverInterface.htest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cpp9dee96b28f96678614a38687df0a02c129730c741529680015000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumoving to devastator to get EPIC 2018-06-22 11:06:55 -04009dee96b28f96678614a38687df0a02c129730c74moving to devastator to get EPICedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppedittest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cppd7c8f8f1f63dd1901d6b4552581e8c67087c86851529680692000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edu--ammend 2018-06-22 11:18:12 -0400d7c8f8f1f63dd1901d6b4552581e8c67087c8685--ammendedittest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_DGBR2_NavierStokes_FlatPlate_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cpp2c986ae8f4402c9d0d4e3931c7886c248de14ac31529931279000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumoving to devastator 2018-06-25 08:54:39 -04002c986ae8f4402c9d0d4e3931c7886c248de14ac3moving to devastatoredittest/sandbox/Adapt2D_DGBR2_NavierStokes_FlatPlate_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AR_toy.cpptest/sandbox/Adapt2D_DGBR2_AR_toy.cpp0e97ee7e6dad848170ea518e82fccd59cc4d66de1529963000000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edutransfering to dev 2018-06-25 17:43:20 -04000e97ee7e6dad848170ea518e82fccd59cc4d66detransfering to devedittest/sandbox/Adapt2D_DGBR2_AR_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_AR_toy.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cpp49fed73db0978a9f2a61001256afceba2c8246131529965150000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumoving to hyper 2018-06-25 18:19:10 -040049fed73db0978a9f2a61001256afceba2c824613moving to hyperedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.hsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.h0b8da3b00e2c6ecd3fbb5da7d3698758247706061530039441000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edupre merge 2018-06-26 14:57:21 -04000b8da3b00e2c6ecd3fbb5da7d369875824770606pre mergeaddsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.haddsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.htest/sandbox/Adapt2D_Galerkin_Stabilized_Poisson_toy.cpp70720469eb43e18494b12692dc72d2fe968c62331530043906000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edutweak 2018-06-26 16:11:46 -040070720469eb43e18494b12692dc72d2fe968c6233tweakedittest/sandbox/Adapt2D_Galerkin_Stabilized_Poisson_toy.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cpp45c60790f9a85aa0919cad104252dcc0fecea60e1530102339000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduadded output dump info to MultiScaleMetric case, should be ready to really run cases now 2018-06-27 08:25:39 -040045c60790f9a85aa0919cad104252dcc0fecea60eadded output dump info to MultiScaleMetric case, should be ready to really run cases nowedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppbbb9cd11b692f19d2a6226c85d813cc688d164881530104301000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumaking MultiScale and MOESS cases consistent and ready for hypersonic 2018-06-27 08:58:21 -0400bbb9cd11b692f19d2a6226c85d813cc688d16488making MultiScale and MOESS cases consistent and ready for hypersonicedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cpp9f39bc616ba2dff4494c5d9a71e418c71a9ed69d1530215555000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edutweaks back to labbox 2018-06-28 15:52:35 -04009f39bc616ba2dff4494c5d9a71e418c71a9ed69dtweaks back to labboxedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppsrc/Meshing/EGTess/CMakeLists.txtsrc/Meshing/EGTess/EGTessModel_aflr4.cppsrc/Meshing/EGTess/EGTessModel.cppsrc/Meshing/EGTess/EGTessModel.htest/unit/Meshing/AFLR/AFLR3_btest.cppCMakeInclude/Finds/FindAFLR.cmakesrc/UserInterfaces/capsAIM/sansLIPAIM.cppc3ca25793b78eb6b709507aa7f2ed45f47f54c941530498418000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdates for edge based AFLR4 calculations 2018-07-01 22:26:58 -0400c3ca25793b78eb6b709507aa7f2ed45f47f54c94Updates for edge based AFLR4 calculationseditCMakeInclude/Finds/FindAFLR.cmakeedittest/unit/Meshing/AFLR/AFLR3_btest.cppeditsrc/Meshing/EGTess/CMakeLists.txteditsrc/Meshing/EGTess/EGTessModel_aflr4.cppeditsrc/UserInterfaces/capsAIM/sansLIPAIM.cppeditsrc/Meshing/EGTess/EGTessModel.heditsrc/Meshing/EGTess/EGTessModel.cpptest/unit/UnitGrids/XField2D_BackwardsStep_X1.cpptest/unit/UnitGrids/XField2D_BackwardsStep_X1.htest/unit/UnitGrids/XField2D_BackwardsStep_X1_btest.cppa37c2f08feadeb98da3a12397f96d4ac9b0a9ff71530539289000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduBackwards facing step unit grid 2018-07-02 09:48:09 -0400a37c2f08feadeb98da3a12397f96d4ac9b0a9ff7Backwards facing step unit gridaddtest/unit/UnitGrids/XField2D_BackwardsStep_X1_btest.cppaddtest/unit/UnitGrids/XField2D_BackwardsStep_X1.cppaddtest/unit/UnitGrids/XField2D_BackwardsStep_X1.htest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_DGBR2_AR_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cpp7ecdbd66d49e88aa228cb3228f56c2ba6523a5ca1530618968000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edupre merge commit 2018-07-03 07:56:08 -04007ecdbd66d49e88aa228cb3228f56c2ba6523a5capre merge commitedittest/sandbox/Adapt2D_DGBR2_AR_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_BackwardsStep_toy.cpptest/unit/UnitGrids/XField2D_BackwardsStep_X1.cpptest/sandbox/Adapt2D_DGBR2_NavierStokes_BackwardsStep_toy.cpp58012bd086a5334c5a63d655bad2af6120965df51530794715000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edubackwards step cases 2018-07-05 08:45:15 -040058012bd086a5334c5a63d655bad2af6120965df5backwards step casesaddtest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_BackwardsStep_toy.cppaddtest/sandbox/Adapt2D_DGBR2_NavierStokes_BackwardsStep_toy.cppedittest/unit/UnitGrids/XField2D_BackwardsStep_X1.cppsrc/Adaptation/MOESS/SolverInterface_Nodal_Galerkin.htest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_BackwardsStep_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_Poisson_toy.cppsrc/Adaptation/MOESS/SolverInterface_Galerkin.hed3e89c28ef2002881a5c6e55a694e45fad52e571530794979000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduremoved SolverInterface_Nodal_Galerkin, it ended up only a tiny tweak from SolverInterface_Galerkin, so changed that instead 2018-07-05 08:49:39 -0400ed3e89c28ef2002881a5c6e55a694e45fad52e57removed SolverInterface_Nodal_Galerkin, it ended up only a tiny tweak from SolverInterface_Galerkin, so changed that insteadedittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_BackwardsStep_toy.cppdeletesrc/Adaptation/MOESS/SolverInterface_Nodal_Galerkin.hedittest/sandbox/Adapt2D_Galerkin_Stabilized_Poisson_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppeditsrc/Adaptation/MOESS/SolverInterface_Galerkin.hsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized.h906f6d11ef5df82d946710f3d6a0c8cc62c2b7951530795022000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduadded options for tweaking order of the tau stabilization. Can force the stabilization to be at a different polynomial order than the actual solve now 2018-07-05 08:50:22 -0400906f6d11ef5df82d946710f3d6a0c8cc62c2b795added options for tweaking order of the tau stabilization. Can force the stabilization to be at a different polynomial order than the actual solve noweditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized.hsrc/Discretization/Galerkin/Stabilization_Galerkin.h1361847ed20601e19a38e924cd0bc6a3901717de1530795044000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduadded Arthur's version of Experimental, copied from his email 2018-07-05 08:50:44 -04001361847ed20601e19a38e924cd0bc6a3901717deadded Arthur's version of Experimental, copied from his emaileditsrc/Discretization/Galerkin/Stabilization_Galerkin.hsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.hsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.h13352d56befb03823e4359cfe83a217ca1d29a411530795092000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edupreprocessor defined version with volume weighting, ought to remove this later 2018-07-05 08:51:32 -040013352d56befb03823e4359cfe83a217ca1d29a41preprocessor defined version with volume weighting, ought to remove this latereditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.heditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.htest/unit/UnitGrids/CMakeLists.txtc7c134b32d59ba4f02e79714151e2e9c92ceb9221530795122000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduforgot the CMakeLists 2018-07-05 08:52:02 -0400c7c134b32d59ba4f02e79714151e2e9c92ceb922forgot the CMakeListsedittest/unit/UnitGrids/CMakeLists.txttest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_DGBR2_NavierStokes_BackwardsStep_toy.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppc8a4da063c414a477de645fbf9f5db0f2c60076d1530795782000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduDG case updates 2018-07-05 09:03:02 -0400c8a4da063c414a477de645fbf9f5db0f2c60076dDG case updatesedittest/sandbox/Adapt2D_DGBR2_NavierStokes_BackwardsStep_toy.cppedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppedittest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cppsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.htest/unit/ErrorEstimate/ErrorEstimateNodal_Galerkin_AD_btest.cppa1ac28ffe154070a54d679b5cefb4303230340a91530796898000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edunodal test passes again 2018-07-05 09:21:38 -0400a1ac28ffe154070a54d679b5cefb4303230340a9nodal test passes againeditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.hedittest/unit/ErrorEstimate/ErrorEstimateNodal_Galerkin_AD_btest.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cppafcfabff1f843aaf4375c9fe0ae3191079fc54ee1530796986000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edupre merge 2018-07-05 09:23:06 -0400afcfabff1f843aaf4375c9fe0ae3191079fc54eepre mergeedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppedittest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cpptest/unit/UnitGrids/XField2D_BackwardsStep_X1.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_BackwardsStep_toy.cpptest/sandbox/Adapt2D_DGBR2_NavierStokes_BackwardsStep_toy.cpp706d8762af75aaef77969181b7a14c8bd449b1f61530876886000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumoving back to nia 2018-07-06 07:34:46 -0400706d8762af75aaef77969181b7a14c8bd449b1f6moving back to niaedittest/unit/UnitGrids/XField2D_BackwardsStep_X1.cppedittest/sandbox/Adapt2D_DGBR2_NavierStokes_BackwardsStep_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_BackwardsStep_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.hsrc/Adaptation/MOESS/SolverInterface_Galerkin.h6a1b4da6a4ac51ed23da2e3d9e959d608dc7cf051530879390000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumoving to dev 2018-07-06 08:16:30 -04006a1b4da6a4ac51ed23da2e3d9e959d608dc7cf05moving to devedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppeditsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.heditsrc/Adaptation/MOESS/SolverInterface_Galerkin.htest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cppba34b324e3e2ff17220164a5146319fb2135c6491530879730000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edutweaks to case 2018-07-06 08:22:10 -0400ba34b324e3e2ff17220164a5146319fb2135c649tweaks to caseedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppedittest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cpptest/unit/pde/IBL/BCIBL2D_btest.cppsrc/pde/IBL/PDEIBL2D.htest/unit/pde/IBL/PDEIBL2D_btest.cppsrc/pde/IBL/PDEIBLUniField.hsrc/pde/IBL/SpaldingLawModified_Instantiate.cppsrc/pde/IBL/BCIBL2D.hsrc/PanelMethod/FunctionEvalQauxv_IBL.hsrc/pde/IBL/VarInterpret2D.hsrc/pde/IBL/IBL_Traits.h45153f0a7ba1bdc2266e9f2c28951f1b912bb83c1531161706000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduStarted a single-field IBL formulation 2018-07-09 14:41:46 -040045153f0a7ba1bdc2266e9f2c28951f1b912bb83cStarted a single-field IBL formulationeditsrc/pde/IBL/IBL_Traits.haddsrc/pde/IBL/PDEIBLUniField.heditsrc/PanelMethod/FunctionEvalQauxv_IBL.heditsrc/pde/IBL/SpaldingLawModified_Instantiate.cppeditsrc/pde/IBL/VarInterpret2D.hedittest/unit/pde/IBL/PDEIBL2D_btest.cppeditsrc/pde/IBL/BCIBL2D.hedittest/unit/pde/IBL/BCIBL2D_btest.cppeditsrc/pde/IBL/PDEIBL2D.hsrc/PanelMethod/FunctionEvalQauxv_IBL.h1c72d657634718914141a0964cda98731afefd771531164722000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduBug fix 2018-07-09 15:32:02 -04001c72d657634718914141a0964cda98731afefd77Bug fixeditsrc/PanelMethod/FunctionEvalQauxv_IBL.hsrc/pde/IBL/IBLMiscClosures.hsrc/pde/IBL/PDEIBL2D.hsrc/pde/IBL/VarInterpret2D.hsrc/pde/IBL/PDEIBLUniField.hsrc/pde/IBL/IBLVarDataType2D.h65fe3df4a909b9da8009c2c31d1cdd34daf108de1531187707000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded PDEIBL class in a single-field formulation 2018-07-09 21:55:07 -040065fe3df4a909b9da8009c2c31d1cdd34daf108deAdded PDEIBL class in a single-field formulationeditsrc/pde/IBL/IBLVarDataType2D.heditsrc/pde/IBL/PDEIBL2D.haddsrc/pde/IBL/IBLMiscClosures.heditsrc/pde/IBL/PDEIBLUniField.heditsrc/pde/IBL/VarInterpret2D.hsrc/pde/IBL/PDEIBLUniField.h3607abc97e4e97e55371ad9bc3fca20bbe431efd1531228087000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed compiler errors 2018-07-10 09:08:07 -04003607abc97e4e97e55371ad9bc3fca20bbe431efdFixed compiler errorseditsrc/pde/IBL/PDEIBLUniField.hsrc/Discretization/Galerkin/IntegrandBoundaryTrace_WakeMatch_Galerkin_IBL.hsrc/pde/IBL/SecondaryVar2D.cppsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppsrc/pde/IBL/PDEIBL2D.hsrc/pde/IBL/PDEIBLUniField.cppsrc/pde/IBL/SetSolnDofCell_IBL2D.hsrc/pde/IBL/CMakeLists.txttest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBLUniField_NACA0004_LamiBL_btest.cppsrc/pde/IBL/BCIBL2D.hsrc/pde/IBL/IBL_Traits.hsrc/pde/IBL/BCIBLUniField.hsrc/pde/IBL/PDEIBLUniField.hsrc/pde/IBL/ElementProjectionIBLoutput_L2.hsrc/pde/IBL/SpaldingLawModified_Instantiate.cpptest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne64_a0_unifield.txtsrc/pde/IBL/VarInterpret2D.hsrc/pde/IBL/BCIBL2D.cppsrc/pde/IBL/BCIBLUniField.cpp2dfc64cc497d03f299b8c68923fca6f5836e85801531242577000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduCompleted UniField IBL uncoupled case of laminar BL over airfoil 2018-07-10 13:09:37 -04002dfc64cc497d03f299b8c68923fca6f5836e8580Completed UniField IBL uncoupled case of laminar BL over airfoiladdsrc/pde/IBL/BCIBLUniField.cppeditsrc/pde/IBL/CMakeLists.txteditsrc/pde/IBL/PDEIBL2D.heditsrc/pde/IBL/PDEIBLUniField.heditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppeditsrc/pde/IBL/ElementProjectionIBLoutput_L2.haddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne64_a0_unifield.txteditsrc/Discretization/Galerkin/IntegrandBoundaryTrace_WakeMatch_Galerkin_IBL.heditsrc/pde/IBL/VarInterpret2D.heditsrc/pde/IBL/SecondaryVar2D.cppaddtest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBLUniField_NACA0004_LamiBL_btest.cppaddsrc/pde/IBL/PDEIBLUniField.cppaddsrc/pde/IBL/BCIBLUniField.heditsrc/pde/IBL/SpaldingLawModified_Instantiate.cppeditsrc/pde/IBL/IBL_Traits.heditsrc/pde/IBL/BCIBL2D.cppeditsrc/pde/IBL/SetSolnDofCell_IBL2D.heditsrc/pde/IBL/BCIBL2D.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeIBL3eqmClosure_btest.cpptest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBL_turbulentWakeibl3eqm_naca0004_ne64_p1_TestNew.txttest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBL_turbulentWakeibl3eqm_naca0004_ne64_p1_Test.txt521b4b5b3760fbc75e7504ecbad210b3fbcb72a01531246098000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduJust file renaming 2018-07-10 14:08:18 -0400521b4b5b3760fbc75e7504ecbad210b3fbcb72a0Just file renamingedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeIBL3eqmClosure_btest.cppaddtest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBL_turbulentWakeibl3eqm_naca0004_ne64_p1_Test.txtdeletetest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBL_turbulentWakeibl3eqm_naca0004_ne64_p1_TestNew.txtsrc/NonLinearSolver/LineUpdate/HalvingSearchLineUpdate_MatrixBlock_4x4_Instantiate.cppsrc/PanelMethod/ProjectionToQauxi_IBL.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test.txtsrc/NonLinearSolver/NewtonSolver_MatrixBlock_4x4_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/Krylov/FGMRES_MatrixBlock_4x4_Instantiate.cppsrc/PanelMethod/AlgebraicEquationSet_ProjectToQauxi.hsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_MatrixBlock_4x4_Instantiate.cppsrc/pde/IBL/BCIBLUniField.hsrc/pde/IBL/PDEIBLUniField.hsrc/pde/IBL/ElementProjectionIBLoutput_L2.hsrc/LinearAlgebra/SparseLinAlg/ScalarMatrix_CRS_int.cppsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Real_Instantiate.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeIBL3eqmClosure_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpp403cfcf6571713a6d0b6b798a1ca2f5ff25720951531248617000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduCoupled IBL UniField is working now. No transition yet. 2018-07-10 14:50:17 -0400403cfcf6571713a6d0b6b798a1ca2f5ff2572095Coupled IBL UniField is working now. No transition yet.editsrc/PanelMethod/AlgebraicEquationSet_ProjectToQauxi.heditsrc/pde/IBL/PDEIBLUniField.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppeditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_MatrixBlock_4x4_Instantiate.cppeditsrc/LinearAlgebra/SparseLinAlg/ScalarMatrix_CRS_int.cppeditsrc/pde/IBL/ElementProjectionIBLoutput_L2.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeIBL3eqmClosure_btest.cppaddtest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test.txteditsrc/LinearAlgebra/SparseLinAlg/Krylov/FGMRES_MatrixBlock_4x4_Instantiate.cppaddtest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cppeditsrc/pde/IBL/BCIBLUniField.heditsrc/NonLinearSolver/NewtonSolver_MatrixBlock_4x4_Instantiate.cppeditsrc/PanelMethod/ProjectionToQauxi_IBL.heditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Real_Instantiate.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cppeditsrc/NonLinearSolver/LineUpdate/HalvingSearchLineUpdate_MatrixBlock_4x4_Instantiate.cppsrc/pde/IBL/BCIBL2D.cppsrc/pde/IBL/BCIBLUniField.cppsrc/pde/IBL/PDEIBLUniField.hfb93e566be75f4be3d2634387d885c472261692f1531248866000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed complier warnings and errors 2018-07-10 14:54:26 -0400fb93e566be75f4be3d2634387d885c472261692fFixed complier warnings and errorseditsrc/pde/IBL/BCIBL2D.cppeditsrc/pde/IBL/BCIBLUniField.cppeditsrc/pde/IBL/PDEIBLUniField.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpp7b41ebdd614d6f3711b6fc06cf47247f7cdb30241531271983000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded a forced transition case for three-field IBL 2018-07-10 21:19:43 -04007b41ebdd614d6f3711b6fc06cf47247f7cdb3024Added a forced transition case for three-field IBLaddtest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppsrc/PanelMethod/ProjectionToQauxi_IBL.hcb617255e0ee36ff067cdf6f9461ad30e0b670d71531274166000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed compiler error 2018-07-10 21:56:06 -0400cb617255e0ee36ff067cdf6f9461ad30e0b670d7Fixed compiler erroreditsrc/PanelMethod/ProjectionToQauxi_IBL.hsrc/Field/Element/GalerkinWeightedIntegral_New.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppc04ec6ae979a7502c0ddebb313df7aab2e5700831531420118000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactored GalerkinWeightedIntegral for cut-cell transion IBL. Started working on UniField implementation 2018-07-12 14:28:38 -0400c04ec6ae979a7502c0ddebb313df7aab2e570083Refactored GalerkinWeightedIntegral for cut-cell transion IBL. Started working on UniField implementationedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppeditsrc/Field/Element/GalerkinWeightedIntegral_New.hsrc/Field/Element/GalerkinWeightedIntegral_New.hsrc/pde/NDConvert/PDENDConvertSpace2D.hsrc/Discretization/Galerkin/IntegrandCell_Galerkin_CutCellTransitionIBLUniField.hsrc/pde/IBL/PDEIBLUniField.h2aeeb1cc5a9a19eee2ed0726d224d0760c2df39b1531428796000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded UniField IBL cut-cell integrand class 2018-07-12 16:53:16 -04002aeeb1cc5a9a19eee2ed0726d224d0760c2df39bAdded UniField IBL cut-cell integrand classeditsrc/pde/IBL/PDEIBLUniField.heditsrc/Field/Element/GalerkinWeightedIntegral_New.haddsrc/Discretization/Galerkin/IntegrandCell_Galerkin_CutCellTransitionIBLUniField.heditsrc/pde/NDConvert/PDENDConvertSpace2D.hsrc/Discretization/Galerkin/ResidualCell_Galerkin_CutCellTransitionIBL.hsrc/Discretization/DG/ResidualCell_DGBR2.h858edc9a830095aa0f6c51dad9f97c261dd21af61531504127000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduminor edit 2018-07-13 13:48:47 -0400858edc9a830095aa0f6c51dad9f97c261dd21af6minor editeditsrc/Discretization/DG/ResidualCell_DGBR2.heditsrc/Discretization/Galerkin/ResidualCell_Galerkin_CutCellTransitionIBL.hsrc/Field/Element/GalerkinWeightedIntegral_New.hsrc/Discretization/Galerkin/ResidualCell_Galerkin.hsrc/Discretization/Galerkin/ResidualCell_Galerkin_CutCellTransitionIBL.hsrc/pde/IBL/PDEIBLUniField.hsrc/Discretization/Galerkin/JacobianCell_Galerkin_CutCellTransitionIBLUniField.hsrc/pde/NDConvert/PDENDConvertSpace2D.hsrc/Discretization/Galerkin/ResidualCell_Galerkin_CutCellTransitionIBLUniField.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppsrc/Discretization/Galerkin/JacobianCell_Galerkin_Param_CutCellTransitionIBLUniField.hsrc/Discretization/Galerkin/IntegrandCell_Galerkin_CutCellTransitionIBLUniField.hsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective.h512764fa268d2d9628466ac2d4287f137eecd6941531744316000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduIntermediate commit: working on UniField IBL 2018-07-16 08:31:56 -0400512764fa268d2d9628466ac2d4287f137eecd694Intermediate commit: working on UniField IBLeditsrc/Discretization/Galerkin/ResidualCell_Galerkin_CutCellTransitionIBL.heditsrc/pde/IBL/PDEIBLUniField.heditsrc/Discretization/Galerkin/ResidualCell_Galerkin.heditsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective.heditsrc/pde/NDConvert/PDENDConvertSpace2D.heditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_CutCellTransitionIBLUniField.haddsrc/Discretization/Galerkin/ResidualCell_Galerkin_CutCellTransitionIBLUniField.haddsrc/Discretization/Galerkin/JacobianCell_Galerkin_CutCellTransitionIBLUniField.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppaddsrc/Discretization/Galerkin/JacobianCell_Galerkin_Param_CutCellTransitionIBLUniField.heditsrc/Field/Element/GalerkinWeightedIntegral_New.htest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBL_Panel_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBL_Panel_btest.cppe70732815e23c1960ba70be8000e0d96f7391b341531748284000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduPruned some ping tests for speedup 2018-07-16 09:38:04 -0400e70732815e23c1960ba70be8000e0d96f7391b34Pruned some ping tests for speedupedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBL_Panel_btest.cppedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBL_Panel_btest.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cpp2aa05339e53d0e1e5b7176fae3f114860e88401d1531769086000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edupre merge 2018-07-16 15:24:46 -04002aa05339e53d0e1e5b7176fae3f114860e88401dpre mergeedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppsrc/Discretization/Galerkin/Stabilization_Galerkin.h747e239334b8195899036a7f40f6da8401c8206d1531772590000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumoving to dev 2018-07-16 16:23:10 -0400747e239334b8195899036a7f40f6da8401c8206dmoving to devedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppeditsrc/Discretization/Galerkin/Stabilization_Galerkin.htest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cpp155e86430ec794ac435af3509e258044fec9582a1531772762000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edupre merge 2018-07-16 16:26:02 -0400155e86430ec794ac435af3509e258044fec9582apre mergeedittest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppsrc/Field/Element/GalerkinWeightedIntegral_New.hsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppsrc/Discretization/Galerkin/JacobianCell_Galerkin_CutCellTransitionIBLUniField.hsrc/Discretization/Galerkin/ResidualCell_Galerkin_CutCellTransitionIBLUniField.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppsrc/Discretization/Galerkin/JacobianCell_Galerkin_CutCellTransitionIBL.hsrc/Discretization/Galerkin/JacobianCell_Galerkin_Param_CutCellTransitionIBLUniField.hsrc/Discretization/Galerkin/IntegrandCell_Galerkin_CutCellTransitionIBLUniField.hsrc/Field/Element/ElementXFieldLine_Instantiate_2D.cppsrc/Discretization/Galerkin/JacobianCell_Galerkin_Param.h99ee2ca4d6f62de58a72ed40bac9cf79d9a2eb9e1531787905000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduUniField IBL now working with cut-cell forced transition 2018-07-16 20:38:25 -040099ee2ca4d6f62de58a72ed40bac9cf79d9a2eb9eUniField IBL now working with cut-cell forced transitioneditsrc/Discretization/Galerkin/JacobianCell_Galerkin_Param.heditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_CutCellTransitionIBLUniField.heditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppeditsrc/Field/Element/ElementXFieldLine_Instantiate_2D.cppeditsrc/Field/Element/GalerkinWeightedIntegral_New.heditsrc/Discretization/Galerkin/JacobianCell_Galerkin_CutCellTransitionIBLUniField.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppeditsrc/Discretization/Galerkin/JacobianCell_Galerkin_CutCellTransitionIBL.heditsrc/Discretization/Galerkin/ResidualCell_Galerkin_CutCellTransitionIBLUniField.heditsrc/Discretization/Galerkin/JacobianCell_Galerkin_Param_CutCellTransitionIBLUniField.hsrc/Discretization/Galerkin/JacobianCell_Galerkin_Param.htest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBLUniField_Panel_btest.cpp82bb424ecb64d5a2cfc12a09dce2a7d178d6951b1531789625000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded a 4x4 system ping test for cut-cell UniField IBL forced transition 2018-07-16 21:07:05 -040082bb424ecb64d5a2cfc12a09dce2a7d178d6951bAdded a 4x4 system ping test for cut-cell UniField IBL forced transitioneditsrc/Discretization/Galerkin/JacobianCell_Galerkin_Param.haddtest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBLUniField_Panel_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBLUniField_Panel_btest.cpp8a00ce2e073374247a62bc26e8e95d8788e888bf1531794284000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded a 4x4 system ping test for cut-cell UniField IBL natural transition 2018-07-16 22:24:44 -04008a00ce2e073374247a62bc26e8e95d8788e888bfAdded a 4x4 system ping test for cut-cell UniField IBL natural transitionaddtest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBLUniField_Panel_btest.cppsrc/pde/IBL/PDEIBLUniField.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppdc5f2d425f215f03f8375f7ab1fbb01d5099a3421531794305000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduPlaying with natural transition cut-cell UniField IBL test case 2018-07-16 22:25:05 -0400dc5f2d425f215f03f8375f7ab1fbb01d5099a342Playing with natural transition cut-cell UniField IBL test caseeditsrc/pde/IBL/PDEIBLUniField.haddtest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppsrc/ErrorEstimate/Galerkin/ErrorEstimate_StrongForm_Galerkin.hsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.hsrc/Discretization/Galerkin/Stabilization_Galerkin.hsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Output_Stabilized.hsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized.hsrc/Discretization/Galerkin/SolutionData_Galerkin_Stabilized.h8e543c0adf8c4c35aa83f9e31f354a9c059997931531830322000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduadded an argument for fixing the order used in the calculation of tau. Thus the same tau is used in the primal and the adjoint calculation. 2018-07-17 08:25:22 -04008e543c0adf8c4c35aa83f9e31f354a9c05999793added an argument for fixing the order used in the calculation of tau. Thus the same tau is used in the primal and the adjoint calculation.editsrc/Discretization/Galerkin/SolutionData_Galerkin_Stabilized.hedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppeditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.heditsrc/Discretization/Galerkin/Stabilization_Galerkin.heditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Output_Stabilized.heditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized.heditsrc/ErrorEstimate/Galerkin/ErrorEstimate_StrongForm_Galerkin.hsrc/pde/NS/SolutionFunction_Euler2D.htest/sandbox/Adapt2D_DGBR2_NavierStokes_NACADuct_toy.cppsrc/pde/NS/SolutionFunction_Euler2D.cppe0f1f586470544c5d604e71e49e45c745df78be41531845745000https://acdl.mit.edu/csi/user/arthuangarthuangarthuang@mit.edumod solution fcn 2018-07-17 12:42:25 -0400e0f1f586470544c5d604e71e49e45c745df78be4mod solution fcneditsrc/pde/NS/SolutionFunction_Euler2D.cppedittest/sandbox/Adapt2D_DGBR2_NavierStokes_NACADuct_toy.cppeditsrc/pde/NS/SolutionFunction_Euler2D.hsrc/Field/Element/GalerkinWeightedIntegral_New.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBLUniField_Panel_btest.cpp34e21b7e85e1062d0411f6d92b7b50182b121eca1531851718000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduMinor cleanup before pushing to Jenkins 2018-07-17 14:21:58 -040034e21b7e85e1062d0411f6d92b7b50182b121ecaMinor cleanup before pushing to Jenkinsedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBLUniField_Panel_btest.cppeditsrc/Field/Element/GalerkinWeightedIntegral_New.htest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_IBL_Panel_btest.cppe4de30a085b20b76fc7b2a256c23b16b784238ea1531853530000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed compilation error 2018-07-17 14:52:10 -0400e4de30a085b20b76fc7b2a256c23b16b784238eaFixed compilation erroredittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_IBL_Panel_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppsrc/pde/IBL/PDEIBLUniField.ha8c8e1ad2f956f2e805ff6a65f42f6918ad8c5ab1531853881000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed point source term at transition (aka ctau fitting) 2018-07-17 14:58:01 -0400a8c8e1ad2f956f2e805ff6a65f42f6918ad8c5abFixed point source term at transition (aka ctau fitting)edittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppeditsrc/pde/IBL/PDEIBLUniField.htest/sandbox/Adapt1D_Galerkin_Stabilized_AD_BoundaryLayer_toy.cpp1396bba76bf908afc12c3162c766cb09485a99191531854731000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumoving to dev 2018-07-17 15:12:11 -04001396bba76bf908afc12c3162c766cb09485a9919moving to devedittest/sandbox/Adapt1D_Galerkin_Stabilized_AD_BoundaryLayer_toy.cpptest/sandbox/Adapt1D_Galerkin_Stabilized_AD_BoundaryLayer_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppf945d9d8ac8a5e1c5e4a91c1363a097adea979d21531854876000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumoving to dev 2018-07-17 15:14:36 -0400f945d9d8ac8a5e1c5e4a91c1363a097adea979d2moving to devedittest/sandbox/Adapt1D_Galerkin_Stabilized_AD_BoundaryLayer_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppsrc/PanelMethod/ProjectionToQauxi_IBL.hsrc/pde/IBL/BCIBLUniField.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne64_a0_unifield_test.txttest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_laminarBLforcedTransition0p8244925_turbulentWakexfoillag_naca0004_ne64_p1_Test_ExplicitMassCons.txtsrc/pde/IBL/ElementProjectionIBLoutput_L2.hsrc/pde/IBL/PDEIBLUniField.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpp8f9c87b4baacba1f565400815efac1fde9b66af01531878150000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFirst converged case with cut-cell UniField IBL forced transition 2018-07-17 21:42:30 -04008f9c87b4baacba1f565400815efac1fde9b66af0First converged case with cut-cell UniField IBL forced transitioneditsrc/PanelMethod/ProjectionToQauxi_IBL.heditsrc/pde/IBL/ElementProjectionIBLoutput_L2.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne64_a0_unifield_test.txteditsrc/pde/IBL/BCIBLUniField.haddtest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_laminarBLforcedTransition0p8244925_turbulentWakexfoillag_naca0004_ne64_p1_Test_ExplicitMassCons.txtedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppeditsrc/pde/IBL/PDEIBLUniField.hsrc/Meshing/refine/MesherInterface_refine_2D.cppsrc/Meshing/refine/CMakeLists.txtsrc/Adaptation/MeshAdapter.cpp811f08f9c0e21cbfff0c5b58f0b3ad0de8d923a81531917471000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edu2D refine interface, it doesn't work yet 2018-07-18 08:37:51 -0400811f08f9c0e21cbfff0c5b58f0b3ad0de8d923a82D refine interface, it doesn't work yeteditsrc/Meshing/refine/CMakeLists.txteditsrc/Adaptation/MeshAdapter.cppaddsrc/Meshing/refine/MesherInterface_refine_2D.cpptest/sandbox/Adapt2D_DGBR2_NavierStokes_BackwardsStep_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AR_toy.cppsrc/Discretization/Galerkin/Stabilization_Galerkin.htest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_BackwardsStep_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cpptest/sandbox/Adapt2D_DGBR2_AR_toy.cpp4f8a53bff27bf316ee18008b8568bf5fb454c8821531917534000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduhacks to move to NASA box 2018-07-18 08:38:54 -04004f8a53bff27bf316ee18008b8568bf5fb454c882hacks to move to NASA boxedittest/sandbox/Adapt2D_DGBR2_NavierStokes_BackwardsStep_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cppeditsrc/Discretization/Galerkin/Stabilization_Galerkin.hedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppedittest/sandbox/Adapt2D_DGBR2_AR_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_BackwardsStep_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_AR_toy.cppsrc/pde/IBL/ElementProjectionIBLoutput_L2.h13bce2c6ec5fe2f08a7db508cd94071fb852a4531531932868000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduOutput primary unknowns (delta, A) before scaling 2018-07-18 12:54:28 -040013bce2c6ec5fe2f08a7db508cd94071fb852a453Output primary unknowns (delta, A) before scalingeditsrc/pde/IBL/ElementProjectionIBLoutput_L2.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppb05a01dbd0f1b121662ca60f608b848c112ac40f1531938520000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed typo 2018-07-18 14:28:40 -0400b05a01dbd0f1b121662ca60f608b848c112ac40fFixed typoedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/sandbox/Solve2D_Uncoupled_DGAdvective_IBL_toy.cpptest/sandbox/Solve2D_Uncoupled_DGAdvective_IBL_p0_toy.cpp36fcde1030102cf6084b1797691e188b5bd5cce81532025311000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduExamined DG residual smoothness on p0 and p1 2018-07-19 14:35:11 -040036fcde1030102cf6084b1797691e188b5bd5cce8Examined DG residual smoothness on p0 and p1addtest/sandbox/Solve2D_Uncoupled_DGAdvective_IBL_p0_toy.cppedittest/sandbox/Solve2D_Uncoupled_DGAdvective_IBL_toy.cppsrc/pde/IBL/PDEIBL2D.h61a1f78931b7c10591435c9b510f71baec632e941532028830000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded a new transition front flux formulation that is consistent with DG full-upwind interface flux scheme 2018-07-19 15:33:50 -040061a1f78931b7c10591435c9b510f71baec632e94Added a new transition front flux formulation that is consistent with DG full-upwind interface flux schemeeditsrc/pde/IBL/PDEIBL2D.hsrc/Discretization/Galerkin/IntegrandCell_Galerkin_CutCellTransitionIBL.h4bbe4bdd38ac3c337b6a45ddb5ebd206491b9d321532034217000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded remarks 2018-07-19 17:03:37 -04004bbe4bdd38ac3c337b6a45ddb5ebd206491b9d32Added remarkseditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_CutCellTransitionIBL.hsrc/pde/IBL/PDEIBLUniField.h99fb99431cb30780d09773a3ddaf8397bbb651db1532094021000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRenamed macro 2018-07-20 09:40:21 -040099fb99431cb30780d09773a3ddaf8397bbb651dbRenamed macroeditsrc/pde/IBL/PDEIBLUniField.hsrc/pde/NDConvert/PDENDConvertSpace2D.hsrc/Field/Element/TraceUnitNormal.hsrc/Discretization/Galerkin/IntegrandInteriorTrace_Galerkin_manifold.hsrc/Discretization/Galerkin/Integrand_Galerkin_fwd.ha052e2b8300b244ff734e047ccf8da0202e802b41532101733000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded a separate trace unit normal formulation for manifold interior trace integrand 2018-07-20 11:48:53 -0400a052e2b8300b244ff734e047ccf8da0202e802b4Added a separate trace unit normal formulation for manifold interior trace integrandeditsrc/Discretization/Galerkin/Integrand_Galerkin_fwd.heditsrc/Field/Element/TraceUnitNormal.heditsrc/Discretization/Galerkin/IntegrandInteriorTrace_Galerkin_manifold.heditsrc/pde/NDConvert/PDENDConvertSpace2D.hsrc/PanelMethod/ProjectionToQauxi_IBL.hsrc/pde/IBL/PDEIBL2D.htest/sandbox/Solve2D_Uncoupled_DGAdvective_IBL_toy.cppsrc/Discretization/Galerkin/Integrand_Galerkin_fwd.htest/sandbox/Solve2D_Uncoupled_DGAdvective_IBL_p0_toy.cppf6c16fa97d4955a916f24ebdca778b3c5396ac731532110774000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactored duplicate-field cut-cell IBL numerical flux at element interface and transition front to make them consistent. Many pyrite files are no longer valid (to be fixed later) 2018-07-20 14:19:34 -0400f6c16fa97d4955a916f24ebdca778b3c5396ac73Refactored duplicate-field cut-cell IBL numerical flux at element interface and transition front to make them consistent. Many pyrite files are no longer valid (to be fixed later)editsrc/PanelMethod/ProjectionToQauxi_IBL.heditsrc/Discretization/Galerkin/Integrand_Galerkin_fwd.heditsrc/pde/IBL/PDEIBL2D.hedittest/sandbox/Solve2D_Uncoupled_DGAdvective_IBL_p0_toy.cppedittest/sandbox/Solve2D_Uncoupled_DGAdvective_IBL_toy.cppsrc/pde/NDConvert/PDENDConvertSpace2D.hsrc/Field/Element/GalerkinWeightedIntegral_New.hsrc/Discretization/Galerkin/IntegrandCell_Galerkin_CutCellTransitionIBL.hsrc/pde/IBL/PDEIBL2D.htest/unit/pde/IBL/PDEIBL2D_btest.cpp075d75f3bcde97f8dedb59347fe7ca04bd57d3471532350304000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduReplaced amplification factor growth rate term in turbulent BL regions 2018-07-23 08:51:44 -0400075d75f3bcde97f8dedb59347fe7ca04bd57d347Replaced amplification factor growth rate term in turbulent BL regionseditsrc/pde/NDConvert/PDENDConvertSpace2D.heditsrc/Field/Element/GalerkinWeightedIntegral_New.heditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_CutCellTransitionIBL.heditsrc/pde/IBL/PDEIBL2D.hedittest/unit/pde/IBL/PDEIBL2D_btest.cppsrc/pde/IBL/IBLMiscClosures.hsrc/PanelMethod/ProjectionToQauxi_IBL.h9db7ba204a0c5a84ab45dc418a8be0b6f2f918a41532355725000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduMinor edits 2018-07-23 10:22:05 -04009db7ba204a0c5a84ab45dc418a8be0b6f2f918a4Minor editseditsrc/pde/IBL/IBLMiscClosures.heditsrc/PanelMethod/ProjectionToQauxi_IBL.hsrc/pde/NS/BCEuler2D_mitState.hsrc/pde/NS/OutputEuler2D.htest/sandbox/Adapt2D_DGBR2_NavierStokes_NACADuct_toy.cppsrc/pde/AnalyticFunction/ScalarFunction1D.hsrc/pde/NS/BCEuler2D_BN.htest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_OjedaMMS_toy.cpptest/sandbox/ErrorOrder_1D_CGStab_AD_toy.cppsrc/Discretization/Galerkin/Stabilization_Galerkin.hsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Output_Stabilized.hsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized.hsrc/Discretization/Galerkin/IntegrandBoundaryTrace_Flux_mitState_Nitsche.h5be81b31dd042ca0e06102751543d882a56769071532367977000https://acdl.mit.edu/csi/user/arthuangarthuangarthuang@mit.eduwent back to nNodes for advective stabilization 2018-07-23 13:46:17 -04005be81b31dd042ca0e06102751543d882a5676907went back to nNodes for advective stabilizationedittest/sandbox/Adapt2D_DGBR2_NavierStokes_NACADuct_toy.cppeditsrc/pde/AnalyticFunction/ScalarFunction1D.heditsrc/pde/NS/BCEuler2D_mitState.heditsrc/Discretization/Galerkin/Stabilization_Galerkin.heditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Output_Stabilized.heditsrc/pde/NS/BCEuler2D_BN.heditsrc/pde/NS/OutputEuler2D.hedittest/sandbox/ErrorOrder_1D_CGStab_AD_toy.cppeditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized.hedittest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_OjedaMMS_toy.cppeditsrc/Discretization/Galerkin/IntegrandBoundaryTrace_Flux_mitState_Nitsche.htest/sandbox/IO/naca0004_qinit_ne64_a0_laminar_xfoil.txttest/sandbox/IO/naca0004_ne63.txttest/sandbox/IO/naca0004_vel_ne63_a0_laminar.txttest/sandbox/IO/naca0004_qinit_ne63_a0_laminar_xfoil.txttest/sandbox/IO/naca0004_ne64.txttest/sandbox/IO/naca0004_vel_ne64_a0_laminar.txtfce97050de5688364dbc9cbc7c9568f9c429a5b51532377048000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRemoved IO files 2018-07-23 16:17:28 -0400fce97050de5688364dbc9cbc7c9568f9c429a5b5Removed IO filesdeletetest/sandbox/IO/naca0004_ne63.txtdeletetest/sandbox/IO/naca0004_vel_ne63_a0_laminar.txtdeletetest/sandbox/IO/naca0004_ne64.txtdeletetest/sandbox/IO/naca0004_qinit_ne63_a0_laminar_xfoil.txtdeletetest/sandbox/IO/naca0004_vel_ne64_a0_laminar.txtdeletetest/sandbox/IO/naca0004_qinit_ne64_a0_laminar_xfoil.txtsrc/Field/Element/GalerkinWeightedIntegral_New.hsrc/Discretization/DG/AlgebraicEquationSet_TransitionIBL.hb3f2da0e4684a24909e767dd0ffd7356e8ae123c1532439728000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduminor edits 2018-07-24 09:42:08 -0400b3f2da0e4684a24909e767dd0ffd7356e8ae123cminor editseditsrc/Discretization/DG/AlgebraicEquationSet_TransitionIBL.heditsrc/Field/Element/GalerkinWeightedIntegral_New.hsrc/Discretization/DG/AlgebraicEquationSet_TransitionIBL.hsrc/Discretization/UpdateFraction/UpdateFractionCell.hc708c5d2b176b47a67ad70f080594fad6905c2b11532440291000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadded comments 2018-07-24 09:51:31 -0400c708c5d2b176b47a67ad70f080594fad6905c2b1added commentseditsrc/Discretization/DG/AlgebraicEquationSet_TransitionIBL.heditsrc/Discretization/UpdateFraction/UpdateFractionCell.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppeddc6e12283d537e2a71083251fcff0d0008b0441532442032000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduUpdated printout 2018-07-24 10:20:32 -0400eddc6e12283d537e2a71083251fcff0d0008b044Updated printoutedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/sandbox/Solve3D_CGStabilized_RANSSA_HemisphereCylinder_toy.cpptest/sandbox/Adapt2D_DGBR2_NavierStokes_FlatPlate_toy.cpptest/sandbox/Solve2D_CGStabilized_Triangle_RANSSA_Joukowski_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_Euler_CubicSource_toy.cpptest/unit/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_Triangle_Euler_btest.cpptest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_OjedaMMS_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_L2_CornerSingularity_toy.cpptest/sandbox/ErrorOrder_1D_CGStab_AD_toy.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cpptest/system/Adaptation/SolverInterface_Galerkin_Stabilized_btest.cpptest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_Joukowski_toy.cpptest/unit/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized_Triangle_AD_btest.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_Helmholtz_toy.cpptest/system/Asymptotic/ErrorEstimateOrder_2D_CG_Triangle_AD_btest.cpptest/sandbox/ErrorOrder_2D_CGStabilizedLifted_Triangle_AD_toy.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AR_btest.cpptest/sandbox/ErrorOrder_2D_CGStabilized_Triangle_AD_toy.cpptest/sandbox/Solve2D_CGStabilized_Triangle_Euler_GaussianBump_toy.cpptest/unit/Discretization/Galerkin/IntegrandCell_Galerkin_StrongForm_AD_btest.cpptest/unit/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized_AD_btest.cpptest/system/LocalSolve/EdgeLocalSolve2D_Primal_Galerkin_Stabilized_Triangle_AD_btest.cpptest/system/LocalSolve/EdgeLocalSolve1D_Dual_Galerkin_Stabilized_Line_AD_btest.cpptest/unit/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized_NS_btest.cpptest/unit/ErrorEstimate/ErrorEstimateCell_Galerkin_AD_btest.cpptest/unit/Discretization/Galerkin/StabilizationMatrix_NS_btest.cpptest/unit/Discretization/Galerkin/JacobianCell_Galerkin_Stabilized_NS_btest.cpptest/sandbox/Solve3D_CGStabilized_RANSSA_CRM_Sub_toy.cpptest/system/Asymptotic/ErrorEstimateOrder_1D_CG_Line_AD_btest.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_Poisson_toy.cpptest/unit/ErrorEstimate/ErrorEstimate_Galerkin_AD_btest.cpptest/unit/ErrorEstimate/ErrorEstimateNodal_Galerkin_AD_btest.cpptest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_FlatPlate_toy.cpptest/unit/Discretization/Galerkin/IntegrandCell_Galerkin_Output_Stabilized_AD_btest.cpptest/system/Asymptotic/ErrorEstimateOrder_2D_CG_Triangle_RD_btest.cpptest/unit/Discretization/Galerkin/JacobianCell_Galerkin_Stabilized_AD_btest.cpptest/system/Asymptotic/ErrorOrder_2D_CGStabilized_RANS_MMS_btest.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/unit/Discretization/Galerkin/SolutionData_Galerkin_Stabilized_btest.cpptest/unit/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_Triangle_AD_btest.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_Euler_btest.cppsrc/Discretization/Galerkin/Stabilization_Galerkin.htest/unit/ErrorEstimate/ErrorEstimateCell_PrimalStrongForm_Galerkin_AD_btest.cpptest/sandbox/Adapt1D_Galerkin_Stabilized_AR_toy.cpp109b3ca73265bbe84f4addbc51a5490ff992977f1532523227000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educhanged to all take order of stabilization as argument to stab 2018-07-25 08:53:47 -0400109b3ca73265bbe84f4addbc51a5490ff992977fchanged to all take order of stabilization as argument to stabedittest/unit/Discretization/Galerkin/JacobianCell_Galerkin_Stabilized_NS_btest.cppedittest/unit/Discretization/Galerkin/IntegrandCell_Galerkin_StrongForm_AD_btest.cppedittest/unit/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_Triangle_AD_btest.cppedittest/system/Asymptotic/ErrorEstimateOrder_1D_CG_Line_AD_btest.cppedittest/sandbox/ErrorOrder_1D_CGStab_AD_toy.cppedittest/unit/Discretization/Galerkin/StabilizationMatrix_NS_btest.cppedittest/unit/ErrorEstimate/ErrorEstimateCell_PrimalStrongForm_Galerkin_AD_btest.cppedittest/unit/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_Triangle_Euler_btest.cppedittest/system/LocalSolve/EdgeLocalSolve2D_Primal_Galerkin_Stabilized_Triangle_AD_btest.cppedittest/unit/ErrorEstimate/ErrorEstimate_Galerkin_AD_btest.cppedittest/system/LocalSolve/EdgeLocalSolve1D_Dual_Galerkin_Stabilized_Line_AD_btest.cppedittest/sandbox/ErrorOrder_2D_CGStabilized_Triangle_AD_toy.cppedittest/unit/Discretization/Galerkin/IntegrandCell_Galerkin_Output_Stabilized_AD_btest.cppedittest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_OjedaMMS_toy.cppedittest/sandbox/Adapt2D_DGBR2_NavierStokes_FlatPlate_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_Poisson_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_Euler_CubicSource_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_L2_CornerSingularity_toy.cppedittest/sandbox/Adapt1D_Galerkin_Stabilized_AR_toy.cppedittest/sandbox/Solve2D_CGStabilized_Triangle_RANSSA_Joukowski_toy.cppedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_Euler_btest.cppedittest/unit/ErrorEstimate/ErrorEstimateNodal_Galerkin_AD_btest.cppedittest/sandbox/Solve3D_CGStabilized_RANSSA_CRM_Sub_toy.cppedittest/unit/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized_NS_btest.cppedittest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_Joukowski_toy.cppedittest/unit/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized_AD_btest.cppedittest/system/Adaptation/SolverInterface_Galerkin_Stabilized_btest.cppedittest/system/Asymptotic/ErrorOrder_2D_CGStabilized_RANS_MMS_btest.cppedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cppedittest/system/Asymptotic/ErrorEstimateOrder_2D_CG_Triangle_RD_btest.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_Helmholtz_toy.cppedittest/unit/Discretization/Galerkin/SolutionData_Galerkin_Stabilized_btest.cppedittest/system/Asymptotic/ErrorEstimateOrder_2D_CG_Triangle_AD_btest.cppedittest/unit/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized_Triangle_AD_btest.cppedittest/unit/ErrorEstimate/ErrorEstimateCell_Galerkin_AD_btest.cppedittest/sandbox/Solve2D_CGStabilized_Triangle_Euler_GaussianBump_toy.cppedittest/unit/Discretization/Galerkin/JacobianCell_Galerkin_Stabilized_AD_btest.cppeditsrc/Discretization/Galerkin/Stabilization_Galerkin.hedittest/sandbox/ErrorOrder_2D_CGStabilizedLifted_Triangle_AD_toy.cppedittest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_FlatPlate_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppedittest/sandbox/Solve3D_CGStabilized_RANSSA_HemisphereCylinder_toy.cppedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AR_btest.cppsrc/PanelMethod/ProjectionToQauxi_IBL.h59d8e9cc7625ae12f3e6b2bf625a0d2ad5c8e3fe1532523642000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduTurned off one upwind flux advective method in Projection to Qauxi. Switched from full upwinding to LF flux 2018-07-25 09:00:42 -040059d8e9cc7625ae12f3e6b2bf625a0d2ad5c8e3feTurned off one upwind flux advective method in Projection to Qauxi. Switched from full upwinding to LF fluxeditsrc/PanelMethod/ProjectionToQauxi_IBL.hsrc/Adaptation/MOESS/SolverInterface.hsrc/Discretization/Galerkin/Stabilization_Galerkin.h580bc55cea371173724948a9718644b6f61eb60d1532523873000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edudiff got lost in the merge, and a line too long 2018-07-25 09:04:33 -0400580bc55cea371173724948a9718644b6f61eb60ddiff got lost in the merge, and a line too longeditsrc/Adaptation/MOESS/SolverInterface.heditsrc/Discretization/Galerkin/Stabilization_Galerkin.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.hsrc/Adaptation/MeshAdapter.cppc661db32b446df7f31693bb02dae2af9cd9d61191532524412000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduforgot the refine preprocessor bits, and a curly brace was one space away from where it should be 2018-07-25 09:13:32 -0400c661db32b446df7f31693bb02dae2af9cd9d6119forgot the refine preprocessor bits, and a curly brace was one space away from where it should beeditsrc/Adaptation/MeshAdapter.cppeditsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.htest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cpptest/unit/UnitGrids/XField2D_BackwardsStep_X1.cpptest/system/Asymptotic/ErrorEstimateOrder_2D_CG_Triangle_AD_btest.cppb9492c2695319fcd99ff5cf3c35b9ae6a8220bf81532525608000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduvera fixes 2018-07-25 09:33:28 -0400b9492c2695319fcd99ff5cf3c35b9ae6a8220bf8vera fixesedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppedittest/unit/UnitGrids/XField2D_BackwardsStep_X1.cppedittest/system/Asymptotic/ErrorEstimateOrder_2D_CG_Triangle_AD_btest.cpptest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_OjedaMMS_toy.cpp4e6dce396960f01c6002616fdd0349a332df92471532528772000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduforgot another one 2018-07-25 10:26:12 -04004e6dce396960f01c6002616fdd0349a332df9247forgot another oneedittest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_OjedaMMS_toy.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cpptest/sandbox/Adapt2D_DGBR2_AR_toy.cpptest/sandbox/Adapt2D_DGBR2_NavierStokes_FlatPlate_toy.cpp19cf6f52d3c43b18b72b1cbcf2e98cdb737882141532538059000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edutweaks for jenkins 2018-07-25 13:00:59 -040019cf6f52d3c43b18b72b1cbcf2e98cdb73788214tweaks for jenkinsedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppedittest/sandbox/Adapt2D_DGBR2_AR_toy.cppedittest/sandbox/Adapt2D_DGBR2_NavierStokes_FlatPlate_toy.cpptest/sandbox/Adapt2D_DGBR2_NavierStokes_FlatPlate_toy.cpp2b39858f2ec2f491580c5b3d5b19903686daffd61532539020000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educurly braces again 2018-07-25 13:17:00 -04002b39858f2ec2f491580c5b3d5b19903686daffd6curly braces againedittest/sandbox/Adapt2D_DGBR2_NavierStokes_FlatPlate_toy.cppsrc/Meshing/refine/XField3D_refine.cpptest/unit/Meshing/refine/refine3D_btest.cpp62da1362eac1292c96e8c0229f97c0da158b5f5a1532543174000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edufixed coarsening node numbering bug, added a unit test to guard it 2018-07-25 14:26:14 -040062da1362eac1292c96e8c0229f97c0da158b5f5afixed coarsening node numbering bug, added a unit test to guard itedittest/unit/Meshing/refine/refine3D_btest.cppeditsrc/Meshing/refine/XField3D_refine.cppsrc/Meshing/refine/MesherInterface_refine.cppsrc/Meshing/refine/XField3D_refine.cpptest/unit/Meshing/refine/refine3D_btest.cppa55bd6a779f0c45f717a52ccadea63cfb396cc261532543563000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduforgot some things 2018-07-25 14:32:43 -0400a55bd6a779f0c45f717a52ccadea63cfb396cc26forgot some thingseditsrc/Meshing/refine/MesherInterface_refine.cppedittest/unit/Meshing/refine/refine3D_btest.cppeditsrc/Meshing/refine/XField3D_refine.cpptest/unit/UnitGrids/XField2D_BackwardsStep_X1.cpp4e62a964434c8b0b0c6825aeed61907a6054a30d1532616310000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edufixed warning about unread data 2018-07-26 10:45:10 -04004e62a964434c8b0b0c6825aeed61907a6054a30dfixed warning about unread dataedittest/unit/UnitGrids/XField2D_BackwardsStep_X1.cppsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion3D.hsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion2D.hsrc/BasisFunction/Quadrature_Cache.htest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_OjedaMMS_toy.cpptest/sandbox/ErrorOrder_1D_CGStab_AD_toy.cppsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion1D.htest/sandbox/Solve2D_DGBR2_Triangle_NavierStokes_OjedaMMS_toy.cppsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized.hsrc/Discretization/Galerkin/IntegrandCell_Galerkin_StrongForm.htest/sandbox/Solve2D_HDG_Triangle_NavierStokes_OjedaMMS_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppsrc/pde/NS/SolutionFunction_NavierStokes2D.hsrc/pde/NDConvert/PDENDConvertSpace2D.hsrc/Discretization/Galerkin/Stabilization_Galerkin.hsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Output_Stabilized.hsrc/pde/NS/PDEEuler2D.hsrc/pde/NDConvert/PDENDConvertSpace1D.h84032170e940ec49fba808d61af56893b0a277b81532630974000https://acdl.mit.edu/csi/user/arthuangarthuangarthuang@mit.edumodified stabilized output, reverted to node based advection stabilization 2018-07-26 14:49:34 -040084032170e940ec49fba808d61af56893b0a277b8modified stabilized output, reverted to node based advection stabilizationeditsrc/BasisFunction/Quadrature_Cache.heditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized.heditsrc/pde/NS/SolutionFunction_NavierStokes2D.heditsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion1D.heditsrc/pde/NDConvert/PDENDConvertSpace2D.hedittest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_OjedaMMS_toy.cppeditsrc/pde/NS/PDEEuler2D.hedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppeditsrc/pde/NDConvert/PDENDConvertSpace1D.hedittest/sandbox/Solve2D_HDG_Triangle_NavierStokes_OjedaMMS_toy.cppeditsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion2D.heditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_StrongForm.heditsrc/Discretization/Galerkin/Stabilization_Galerkin.heditsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion3D.heditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Output_Stabilized.hedittest/sandbox/ErrorOrder_1D_CGStab_AD_toy.cppedittest/sandbox/Solve2D_DGBR2_Triangle_NavierStokes_OjedaMMS_toy.cpptest/sandbox/Solve2D_DGBR2_Triangle_RANSSA_Joukowski_UROP_toy.cppsrc/Discretization/DG/AlgebraicEquationSet_DGBR2_impl.htest/sandbox/Adapt2D_DGBR2_RANSSA_Joukowski_UROP_toy.cpptest/sandbox/Solve2D_DGBR2_Quadrilateral_RANSSA_Joukowski_UROP_toy.cppsrc/Meshing/EPIC/XField_PX.cpp51c27de4ad23207ea79f3fb505d8636cb4dcfedb1532705114000https://acdl.mit.edu/csi/user/jzavalajzavalajzavala@mit.edusandbox, added high order quads to PX mesh reader, fixed periodic bug in DG 2018-07-27 11:25:14 -040051c27de4ad23207ea79f3fb505d8636cb4dcfedbsandbox, added high order quads to PX mesh reader, fixed periodic bug in DGeditsrc/Discretization/DG/AlgebraicEquationSet_DGBR2_impl.haddtest/sandbox/Solve2D_DGBR2_Triangle_RANSSA_Joukowski_UROP_toy.cppeditsrc/Meshing/EPIC/XField_PX.cppaddtest/sandbox/Solve2D_DGBR2_Quadrilateral_RANSSA_Joukowski_UROP_toy.cppaddtest/sandbox/Adapt2D_DGBR2_RANSSA_Joukowski_UROP_toy.cpptest/sandbox/Solve2D_DGBR2_Triangle_RANSSA_Joukowski_UROP_toy.cpptest/sandbox/Adapt2D_DGBR2_RANSSA_Joukowski_UROP_toy.cpptest/sandbox/Solve2D_DGBR2_Quadrilateral_RANSSA_Joukowski_UROP_toy.cppsrc/Meshing/EPIC/XField_PX.cpp3e6d68f95d20b4037fc6cbe56e88955097287f211532717714000https://acdl.mit.edu/csi/user/jzavalajzavalajzavala@mit.eduRemoved tabs from files in previous commit. 2018-07-27 14:55:14 -04003e6d68f95d20b4037fc6cbe56e88955097287f21Removed tabs from files in previous commit.editsrc/Meshing/EPIC/XField_PX.cppedittest/sandbox/Solve2D_DGBR2_Triangle_RANSSA_Joukowski_UROP_toy.cppedittest/sandbox/Solve2D_DGBR2_Quadrilateral_RANSSA_Joukowski_UROP_toy.cppedittest/sandbox/Adapt2D_DGBR2_RANSSA_Joukowski_UROP_toy.cpptest/unit/Discretization/Galerkin/FunctionalBoundaryTrace_Dispatch_Galerkin_AD_btest.cpptest/sandbox/Solve2D_DGBR2_Triangle_NavierStokes_NACADuct_toy.cpptest/unit/Discretization/Galerkin/StabilizationMatrix_NS_btest.cpptest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_OjedaMMS_toy.cpptest/sandbox/Solve2D_DGBR2_Triangle_NavierStokes_OjedaMMS_toy.cppsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized.htest/unit/pde/NS/EulerSolutionFunction2D_btest.cpptest/unit/pde/NS/BCEuler2D_btest.cpptest/unit/pde/NS/NavierStokesSolutionFunction2D_btest.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cpptest/sandbox/Solve2D_DGAdvective_Triangle_Euler_Wake_toy.cpptest/unit/Discretization/Galerkin/IntegrandCell_Galerkin_Output_Stabilized_AD_btest.cpptest/unit/Discretization/Galerkin/Galerkin_AlgEqSet_OutputFunctional.nbsrc/pde/NS/SolutionFunction_NavierStokes2D.hsrc/pde/NDConvert/PDENDConvertSpace2D.hsrc/pde/NS/BCEuler2D_BN.hsrc/Discretization/Galerkin/Stabilization_Galerkin.hsrc/pde/NS/SolutionFunction_Euler2D.hsrc/Discretization/Galerkin/IntegrandBoundaryTrace_Flux_mitState_Nitsche.htest/unit/Discretization/Galerkin/IntegrandBoundaryTrace_Flux_mitState_Nitsche_AD_btest.cpptest/unit/Discretization/Galerkin/Galerkin_Stabilized_AD.nbb1f9bce218eb01c5ca7e2bf4f60e598613bf79381532721893000https://acdl.mit.edu/csi/user/arthuangarthuangarthuang@mit.edustabilization consistent and passing unit tests. updated nitsche parameters 2018-07-27 16:04:53 -0400b1f9bce218eb01c5ca7e2bf4f60e598613bf7938stabilization consistent and passing unit tests. updated nitsche parametersedittest/unit/Discretization/Galerkin/FunctionalBoundaryTrace_Dispatch_Galerkin_AD_btest.cppedittest/unit/Discretization/Galerkin/Galerkin_Stabilized_AD.nbeditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized.hedittest/unit/pde/NS/NavierStokesSolutionFunction2D_btest.cppeditsrc/pde/NDConvert/PDENDConvertSpace2D.hedittest/unit/Discretization/Galerkin/Galerkin_AlgEqSet_OutputFunctional.nbeditsrc/pde/NS/BCEuler2D_BN.hedittest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_OjedaMMS_toy.cppedittest/unit/pde/NS/EulerSolutionFunction2D_btest.cppeditsrc/pde/NS/SolutionFunction_NavierStokes2D.hedittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cppedittest/unit/Discretization/Galerkin/IntegrandBoundaryTrace_Flux_mitState_Nitsche_AD_btest.cppeditsrc/Discretization/Galerkin/IntegrandBoundaryTrace_Flux_mitState_Nitsche.heditsrc/pde/NS/SolutionFunction_Euler2D.hedittest/unit/Discretization/Galerkin/StabilizationMatrix_NS_btest.cppedittest/unit/pde/NS/BCEuler2D_btest.cppeditsrc/Discretization/Galerkin/Stabilization_Galerkin.hedittest/sandbox/Solve2D_DGAdvective_Triangle_Euler_Wake_toy.cppedittest/unit/Discretization/Galerkin/IntegrandCell_Galerkin_Output_Stabilized_AD_btest.cppedittest/sandbox/Solve2D_DGBR2_Triangle_NavierStokes_NACADuct_toy.cppedittest/sandbox/Solve2D_DGBR2_Triangle_NavierStokes_OjedaMMS_toy.cpptest/sandbox/Solve2D_DGBR2_Triangle_RANSSA_Joukowski_UROP_toy.cpptest/sandbox/Adapt2D_DGBR2_RANSSA_Joukowski_UROP_toy.cpptest/sandbox/Solve2D_DGBR2_Quadrilateral_RANSSA_Joukowski_UROP_toy.cppcd515601439e86886858553af306d8282f66c04f1532725753000https://acdl.mit.edu/csi/user/jzavalajzavalajzavala@mit.eduFixed curly brackets formatting in previous commit's files. 2018-07-27 17:09:13 -0400cd515601439e86886858553af306d8282f66c04fFixed curly brackets formatting in previous commit's files.edittest/sandbox/Solve2D_DGBR2_Triangle_RANSSA_Joukowski_UROP_toy.cppedittest/sandbox/Adapt2D_DGBR2_RANSSA_Joukowski_UROP_toy.cppedittest/sandbox/Solve2D_DGBR2_Quadrilateral_RANSSA_Joukowski_UROP_toy.cppCMakeInclude/Finds/FindCAPS.cmakesrc/Meshing/EGTess/EGTessModel.cppCMakeInclude/Builds/BuildTETGEN.cmakesrc/UserInterfaces/LIPSolver.cppdc3458c5dc3ff3db19c3d2456aca48408b52a65c1532732604000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMinor cleanup 2018-07-27 19:03:24 -0400dc3458c5dc3ff3db19c3d2456aca48408b52a65cMinor cleanupeditsrc/UserInterfaces/LIPSolver.cppeditCMakeInclude/Finds/FindCAPS.cmakeeditCMakeInclude/Builds/BuildTETGEN.cmakeeditsrc/Meshing/EGTess/EGTessModel.cppsrc/pde/NDConvert/PDENDConvertSpaceTime3D.hsrc/pde/NS/PDERANSSA2D.hsrc/pde/PorousMedia/PDEBuckleyLeverett_ArtificialViscosity1D.hsrc/pde/NDConvert/PDENDConvertSpaceTime1D.hsrc/pde/ArtificialViscosity/PDEmitAVSensor3D.hsrc/pde/Sensor/PDESensorParameter1D.hsrc/pde/NS/PDEEulermitAVDiffusion3D.hsrc/pde/ArtificialViscosity/PDEmitAVSensor1D.hsrc/pde/NS/PDEEulermitAVDiffusion1D.hsrc/pde/Burgers/PDEBurgers_ArtificialViscosity1D.hsrc/pde/ArtificialViscosity/AVSensor_ViscousFlux2D.hsrc/pde/PorousMedia/PDETwoPhase_ArtificialViscosity2D.hsrc/pde/NS/BCEulerArtificialViscosity3D.hsrc/pde/NDConvert/PDENDConvertSpace2D.hsrc/Discretization/DG/IntegrandInteriorTrace_DGBR2.hsrc/pde/NS/PDERANSSA3D.hsrc/pde/NDConvert/PDENDConvertSpaceTime2D.hsrc/pde/Sensor/PDESensorParameter2D.hsrc/pde/NS/PDEEulermitAVDiffusion2D.hsrc/pde/ArtificialViscosity/PDEmitAVSensor2D.hsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion_ArtificialViscosity2D.hsrc/pde/Burgers/PDEBurgers_ArtificialViscosity2D.hsrc/pde/PorousMedia/PDETwoPhase_ArtificialViscosity1D.hsrc/pde/ArtificialViscosity/AVSensor_ViscousFlux1D.hsrc/pde/ArtificialViscosity/AVSensor_ViscousFlux3D.hsrc/pde/NDConvert/PDENDConvertSpace3D.hsrc/pde/NDConvert/PDENDConvertSpace1D.h88c57424d8890bfb4f746d0c04575b8b2b831a491532740720000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduFixed continuous-param assumption for fluxViscous 2018-07-27 19:18:40 -060088c57424d8890bfb4f746d0c04575b8b2b831a49Fixed continuous-param assumption for fluxViscouseditsrc/pde/NS/PDEEulermitAVDiffusion1D.heditsrc/Discretization/DG/IntegrandInteriorTrace_DGBR2.heditsrc/pde/NS/PDERANSSA3D.heditsrc/pde/NS/PDEEulermitAVDiffusion3D.heditsrc/pde/PorousMedia/PDEBuckleyLeverett_ArtificialViscosity1D.heditsrc/pde/ArtificialViscosity/PDEmitAVSensor2D.heditsrc/pde/ArtificialViscosity/AVSensor_ViscousFlux2D.heditsrc/pde/Sensor/PDESensorParameter2D.heditsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion_ArtificialViscosity2D.heditsrc/pde/ArtificialViscosity/AVSensor_ViscousFlux3D.heditsrc/pde/PorousMedia/PDETwoPhase_ArtificialViscosity1D.heditsrc/pde/NS/BCEulerArtificialViscosity3D.heditsrc/pde/Burgers/PDEBurgers_ArtificialViscosity1D.heditsrc/pde/Sensor/PDESensorParameter1D.heditsrc/pde/NDConvert/PDENDConvertSpace2D.heditsrc/pde/NS/PDEEulermitAVDiffusion2D.heditsrc/pde/NDConvert/PDENDConvertSpace1D.heditsrc/pde/NDConvert/PDENDConvertSpaceTime3D.heditsrc/pde/NDConvert/PDENDConvertSpaceTime1D.heditsrc/pde/PorousMedia/PDETwoPhase_ArtificialViscosity2D.heditsrc/pde/ArtificialViscosity/PDEmitAVSensor3D.heditsrc/pde/NDConvert/PDENDConvertSpace3D.heditsrc/pde/ArtificialViscosity/PDEmitAVSensor1D.heditsrc/pde/ArtificialViscosity/AVSensor_ViscousFlux1D.heditsrc/pde/NDConvert/PDENDConvertSpaceTime2D.heditsrc/pde/NS/PDERANSSA2D.heditsrc/pde/Burgers/PDEBurgers_ArtificialViscosity2D.hsrc/SolutionTrek/Continuation/Homotopy/PDEHomotopy.hsrc/pde/NDConvert/PDENDConvertSpaceTime3D.htest/unit/pde/NDConvert/PDENDConvert1D_AD_ST_btest.cpptest/system/CodeConsistency/PDEmitAVSensor1D_Consistency_btest.cpptest/unit/pde/PorousMedia/PDETwoPhase_ArtificialViscosity2D_btest.cpptest/unit/pde/AdvectionDiffusion/PDEAdvectionDiffusion_ArtificialViscosity2D_btest.cpptest/unit/pde/NDConvert/PDENDConvert3D_AD_btest.cpptest/unit/pde/NDConvert/PDENDConvert1D_AD_btest.cpptest/unit/pde/Sensor/PDESensorParameter1D_btest.cpptest/unit/pde/NS/PDEEulermitAVDiffusion2D_btest.cpptest/unit/pde/NDConvert/PDENDConvert2D_AD_btest.cpptest/unit/pde/NS/PDEEulermitAVDiffusion3D_btest.cpptest/unit/pde/ArtificialViscosity/PDEmitAVSensor2D_btest.cpptest/unit/pde/PorousMedia/PDEBuckleyLeverett_ArtificialViscosity1D_btest.cppsrc/Discretization/FV_TPFA/IntegrandInteriorTrace_FV_TPFA.htest/unit/pde/Sensor/PDESensorParameter2D_btest.cpptest/unit/pde/PorousMedia/PDETwoPhase_ArtificialViscosity1D_btest.cpptest/unit/pde/NS/PDEEulermitAVDiffusion1D_btest.cpptest/unit/pde/ArtificialViscosity/PDEmitAVSensor1D_btest.cppaa4cc7c02204125a913382a66d3f15bd30f02cc91532750466000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduUnit tests passing with param bug fix 2018-07-27 22:01:06 -0600aa4cc7c02204125a913382a66d3f15bd30f02cc9Unit tests passing with param bug fixedittest/unit/pde/PorousMedia/PDETwoPhase_ArtificialViscosity2D_btest.cppedittest/unit/pde/NDConvert/PDENDConvert1D_AD_ST_btest.cppeditsrc/pde/NDConvert/PDENDConvertSpaceTime3D.hedittest/unit/pde/AdvectionDiffusion/PDEAdvectionDiffusion_ArtificialViscosity2D_btest.cppedittest/unit/pde/NS/PDEEulermitAVDiffusion3D_btest.cppedittest/unit/pde/NDConvert/PDENDConvert2D_AD_btest.cppedittest/unit/pde/NS/PDEEulermitAVDiffusion1D_btest.cppedittest/unit/pde/PorousMedia/PDEBuckleyLeverett_ArtificialViscosity1D_btest.cppedittest/unit/pde/ArtificialViscosity/PDEmitAVSensor2D_btest.cppeditsrc/Discretization/FV_TPFA/IntegrandInteriorTrace_FV_TPFA.heditsrc/SolutionTrek/Continuation/Homotopy/PDEHomotopy.hedittest/unit/pde/Sensor/PDESensorParameter2D_btest.cppedittest/unit/pde/NDConvert/PDENDConvert3D_AD_btest.cppedittest/unit/pde/NS/PDEEulermitAVDiffusion2D_btest.cppedittest/unit/pde/ArtificialViscosity/PDEmitAVSensor1D_btest.cppedittest/unit/pde/NDConvert/PDENDConvert1D_AD_btest.cppedittest/unit/pde/Sensor/PDESensorParameter1D_btest.cppedittest/unit/pde/PorousMedia/PDETwoPhase_ArtificialViscosity1D_btest.cppedittest/system/CodeConsistency/PDEmitAVSensor1D_Consistency_btest.cppsrc/Adaptation/MOESS/ErrorModel.cpp866b2186821cdfd8a979348b383af01fb41e27191532816407000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed a nightly warning 2018-07-28 18:20:07 -0400866b2186821cdfd8a979348b383af01fb41e2719Fixed a nightly warningeditsrc/Adaptation/MOESS/ErrorModel.cppsrc/pde/NS/BCEulermitAVDiffusion1D.hsrc/pde/NS/BCEuler1D.hsrc/pde/NS/BCEuler1D.cpptest/sandbox/Solve1D_DGBR2_Line_Euler_ShuOsher_AV_ST_toy.cppsrc/pde/NS/PDEEulermitAVDiffusion1D.htest/unit/IO/pde/NS/BCEuler1D_pattern.txttest/unit/pde/NS/BCEuler1D_btest.cpptest/sandbox/Solve1D_DGBR2_Line_Euler_Lax_AV_ST_toy.cppsrc/pde/NS/SolutionFunction_Euler1D.cppsrc/pde/NS/BCEuler1D_mitState_ST.htest/sandbox/Solve1D_DGBR2_Line_Euler_Sod_toy.cpptest/sandbox/Solve1D_DGBR2_Line_Euler_Sod_AV_ST_toy.cppsrc/pde/NS/SolutionFunction_Euler1D.hsrc/pde/NS/BCEuler1D_mitState.h366881e41cb5e23eaffb3aa7e9d816c68f741ade1532821667000https://acdl.mit.edu/csi/user/blscblscblsc@mit.edu1D spacetime shock problems 2018-07-28 17:47:47 -0600366881e41cb5e23eaffb3aa7e9d816c68f741ade1D spacetime shock problemsaddtest/sandbox/Solve1D_DGBR2_Line_Euler_Lax_AV_ST_toy.cppedittest/unit/pde/NS/BCEuler1D_btest.cppeditsrc/pde/NS/SolutionFunction_Euler1D.heditsrc/pde/NS/BCEuler1D.heditsrc/pde/NS/BCEuler1D_mitState.heditsrc/pde/NS/BCEuler1D.cppaddtest/sandbox/Solve1D_DGBR2_Line_Euler_ShuOsher_AV_ST_toy.cppeditsrc/pde/NS/BCEulermitAVDiffusion1D.heditsrc/pde/NS/PDEEulermitAVDiffusion1D.haddtest/sandbox/Solve1D_DGBR2_Line_Euler_Sod_AV_ST_toy.cppdeletetest/sandbox/Solve1D_DGBR2_Line_Euler_Sod_toy.cppedittest/unit/IO/pde/NS/BCEuler1D_pattern.txteditsrc/pde/NS/SolutionFunction_Euler1D.cppeditsrc/pde/NS/BCEuler1D_mitState_ST.hsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion_ArtificialViscosity2D.h4b5c5a1b4422577ab22db42a04d721105e355c691532833954000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduFormatting errors 2018-07-28 21:12:34 -06004b5c5a1b4422577ab22db42a04d721105e355c69Formatting errorseditsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion_ArtificialViscosity2D.hsrc/pde/NS/SolutionFunction_Euler1D.hsrc/pde/ArtificialViscosity/AVSensor_ViscousFlux1D.hbcac0eae7fc29947ddfa926126ec10466636acc11532875465000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduMore bug fix 2018-07-29 08:44:25 -0600bcac0eae7fc29947ddfa926126ec10466636acc1More bug fixeditsrc/pde/NS/SolutionFunction_Euler1D.heditsrc/pde/ArtificialViscosity/AVSensor_ViscousFlux1D.hsrc/Meshing/gmsh/XField_gmsh.cppsrc/pde/FullPotential/BCLinearizedIncompressiblePotential3D.hsrc/UserInterfaces/capsAIM/markWakeEdges.cppsrc/UserInterfaces/capsAIM/sansLIPAIM.cppsrc/Meshing/refine/MesherInterface_refine_2D.cppa24115b4b797372af52029b2080dbb4132ec60b21532911224000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdding hinge computation from CSM. Other minor cleanup. 2018-07-29 20:40:24 -0400a24115b4b797372af52029b2080dbb4132ec60b2Adding hinge computation from CSM. Other minor cleanup.editsrc/UserInterfaces/capsAIM/markWakeEdges.cppeditsrc/pde/FullPotential/BCLinearizedIncompressiblePotential3D.heditsrc/UserInterfaces/capsAIM/sansLIPAIM.cppeditsrc/Meshing/refine/MesherInterface_refine_2D.cppeditsrc/Meshing/gmsh/XField_gmsh.cpptest/system/IO/CodeConsistency/IBL/naca0004_ne78.txtsrc/pde/IBL/PDEIBL2D.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_p0_btest.cpptest/system/IO/CodeConsistency/IBL/naca0004_ne78_wake_a0.txttest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne78_a0_transition.txt7d7ffe2f5f355be9fc200826842527be1df1049c1532956647000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduIntermediate commit: working DG cut-cell IBL of various formulations. Now switching to try HDG 2018-07-30 09:17:27 -04007d7ffe2f5f355be9fc200826842527be1df1049cIntermediate commit: working DG cut-cell IBL of various formulations. Now switching to try HDGeditsrc/pde/IBL/PDEIBL2D.haddtest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_p0_btest.cppaddtest/system/IO/CodeConsistency/IBL/naca0004_ne78.txtedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppaddtest/system/IO/CodeConsistency/IBL/naca0004_ne78_wake_a0.txtaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne78_a0_transition.txtsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppsrc/Discretization/Galerkin/ResidualCell_Galerkin.htest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBLUniField_Panel_btest.cppsrc/Discretization/Galerkin/JacobianCell_Galerkin_CutCellTransitionIBLUniField.hsrc/Discretization/Galerkin/ResidualCell_Galerkin_CutCellTransitionIBL.htest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBLUniField_Panel_btest.cppsrc/Discretization/Galerkin/JacobianCell_Galerkin_CutCellTransitionIBL.hsrc/Discretization/Galerkin/IntegrandCell_Galerkin_CutCellTransitionIBLUniField.hsrc/Field/Element/ElementXFieldLine_Instantiate_2D.cppsrc/Discretization/Galerkin/JacobianCell_Galerkin_Param.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppsrc/Field/Element/GalerkinWeightedIntegral_New.htest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBL_Panel_btest.cppsrc/pde/IBL/PDEIBLUniField.htest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBL_Panel_btest.cppsrc/pde/NDConvert/PDENDConvertSpace2D.hsrc/Discretization/Galerkin/ResidualCell_Galerkin_CutCellTransitionIBLUniField.hsrc/Discretization/Galerkin/JacobianCell_Galerkin_Param_CutCellTransitionIBLUniField.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppf75d9efb7ab7f226645243c8e1d854a8457ad2c81532958236000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRevert "Merge branch 'threeFieldIBL' into shunz/develop" This reverts commit 13871a91f1018c555b66fa1d703fcaba7fcd6c72, reversing changes made to e4f9b9838654ab1c62f374a916c431c0ef45645e. 2018-07-30 09:43:56 -0400f75d9efb7ab7f226645243c8e1d854a8457ad2c8Revert "Merge branch 'threeFieldIBL' into shunz/develop"deletetest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBLUniField_Panel_btest.cppdeletesrc/Discretization/Galerkin/JacobianCell_Galerkin_CutCellTransitionIBLUniField.hdeletesrc/Discretization/Galerkin/JacobianCell_Galerkin_Param_CutCellTransitionIBLUniField.hdeletetest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBLUniField_Panel_btest.cppeditsrc/Discretization/Galerkin/JacobianCell_Galerkin_Param.heditsrc/Discretization/Galerkin/ResidualCell_Galerkin_CutCellTransitionIBL.heditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppdeletesrc/Discretization/Galerkin/IntegrandCell_Galerkin_CutCellTransitionIBLUniField.heditsrc/pde/IBL/PDEIBLUniField.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBL_Panel_btest.cppeditsrc/Field/Element/GalerkinWeightedIntegral_New.heditsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppeditsrc/pde/NDConvert/PDENDConvertSpace2D.heditsrc/Discretization/Galerkin/JacobianCell_Galerkin_CutCellTransitionIBL.hdeletesrc/Discretization/Galerkin/ResidualCell_Galerkin_CutCellTransitionIBLUniField.hdeletetest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppeditsrc/Discretization/Galerkin/ResidualCell_Galerkin.heditsrc/Field/Element/ElementXFieldLine_Instantiate_2D.cppedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBL_Panel_btest.cppsrc/Discretization/Galerkin/ResidualCell_Galerkin.hsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBLUniField_Panel_btest.cppsrc/Discretization/Galerkin/JacobianCell_Galerkin_CutCellTransitionIBLUniField.hsrc/Discretization/Galerkin/ResidualCell_Galerkin_CutCellTransitionIBL.htest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBLUniField_Panel_btest.cppsrc/Discretization/Galerkin/JacobianCell_Galerkin_CutCellTransitionIBL.hsrc/Discretization/Galerkin/IntegrandCell_Galerkin_CutCellTransitionIBLUniField.hsrc/Field/Element/ElementXFieldLine_Instantiate_2D.cppsrc/Discretization/Galerkin/JacobianCell_Galerkin_Param.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppsrc/Field/Element/GalerkinWeightedIntegral_New.htest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBL_Panel_btest.cppsrc/pde/IBL/PDEIBLUniField.htest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBL_Panel_btest.cppsrc/pde/NDConvert/PDENDConvertSpace2D.hsrc/Discretization/Galerkin/ResidualCell_Galerkin_CutCellTransitionIBLUniField.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppsrc/Discretization/Galerkin/JacobianCell_Galerkin_Param_CutCellTransitionIBLUniField.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective.h1468a3f584f5c4ca69c9d139db53174d5b6419471532962602000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRevert "Revert "Merge branch 'threeFieldIBL' into shunz/develop"" This reverts commit f75d9efb7ab7f226645243c8e1d854a8457ad2c8. 2018-07-30 10:56:42 -04001468a3f584f5c4ca69c9d139db53174d5b641947Revert "Revert "Merge branch 'threeFieldIBL' into shunz/develop""editsrc/Discretization/Galerkin/JacobianCell_Galerkin_CutCellTransitionIBL.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBL_Panel_btest.cppeditsrc/Discretization/Galerkin/ResidualCell_Galerkin.haddsrc/Discretization/Galerkin/JacobianCell_Galerkin_Param_CutCellTransitionIBLUniField.haddtest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBLUniField_Panel_btest.cppaddsrc/Discretization/Galerkin/IntegrandCell_Galerkin_CutCellTransitionIBLUniField.haddtest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBLUniField_Panel_btest.cppeditsrc/Field/Element/GalerkinWeightedIntegral_New.haddtest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppeditsrc/Discretization/Galerkin/JacobianCell_Galerkin_Param.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppeditsrc/pde/NDConvert/PDENDConvertSpace2D.haddsrc/Discretization/Galerkin/JacobianCell_Galerkin_CutCellTransitionIBLUniField.heditsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective.haddsrc/Discretization/Galerkin/ResidualCell_Galerkin_CutCellTransitionIBLUniField.heditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBL_Panel_btest.cppeditsrc/Field/Element/ElementXFieldLine_Instantiate_2D.cppeditsrc/Discretization/Galerkin/ResidualCell_Galerkin_CutCellTransitionIBL.heditsrc/pde/IBL/PDEIBLUniField.htest/system/IO/ErrorOrder/ErrorOrder_1D_HDG_Advection_MinTest.txtsrc/Discretization/HDG/Instantiate/AlgebraicEquationSet_HDG_AdvectionDiffusion1D_AUDUSUG.cpptest/system/Asymptotic/ErrorOrder_1D_HDG_Advection_btest.cpptest/system/Asymptotic/ErrorOrder_1D_HDG_AD_btest.cppsrc/Discretization/HDG/AlgebraicEquationSet_HDG.htest/system/IO/ErrorOrder/ErrorOrder_1D_HDG_Advection_FullTest.txte97ac7f3f2580073bfd77bbe255c8177553283111532972481000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded a pure advection HDG system test 2018-07-30 13:41:21 -0400e97ac7f3f2580073bfd77bbe255c817755328311Added a pure advection HDG system testaddtest/system/IO/ErrorOrder/ErrorOrder_1D_HDG_Advection_FullTest.txteditsrc/Discretization/HDG/Instantiate/AlgebraicEquationSet_HDG_AdvectionDiffusion1D_AUDUSUG.cppedittest/system/Asymptotic/ErrorOrder_1D_HDG_AD_btest.cppaddtest/system/Asymptotic/ErrorOrder_1D_HDG_Advection_btest.cppaddtest/system/IO/ErrorOrder/ErrorOrder_1D_HDG_Advection_MinTest.txteditsrc/Discretization/HDG/AlgebraicEquationSet_HDG.hsrc/Discretization/HDG/ResidualCell_HDG.hsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.hsrc/Discretization/HDG/IntegrandCell_HDG.hc2fb59450c4f0b63708d8160f33db1f320f09ae11532975893000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactored residual HDG to handle tuple of qfld and afld 2018-07-30 14:38:13 -0400c2fb59450c4f0b63708d8160f33db1f320f09ae1Refactored residual HDG to handle tuple of qfld and afldeditsrc/Discretization/HDG/ResidualCell_HDG.heditsrc/Discretization/HDG/IntegrandCell_HDG.heditsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.hsrc/Discretization/HDG/JacobianBoundaryTrace_Dispatch_HDG.hsrc/Discretization/HDG/JacobianBoundaryCell_HDG_AuxiliaryVariable.hsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.hsrc/Discretization/HDG/ResidualBoundaryTrace_Dispatch_HDG.hsrc/Discretization/HDG/JacobianBoundaryTrace_HDG.h42f97b3382856ebf22d496f7c70b6a7fd875a3831532977808000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactored HDG boundary trace residual and jacobian to handle tuple of qfld and afld 2018-07-30 15:10:08 -040042f97b3382856ebf22d496f7c70b6a7fd875a383Refactored HDG boundary trace residual and jacobian to handle tuple of qfld and afldeditsrc/Discretization/HDG/ResidualBoundaryTrace_Dispatch_HDG.heditsrc/Discretization/HDG/JacobianBoundaryTrace_Dispatch_HDG.heditsrc/Discretization/HDG/JacobianBoundaryTrace_HDG.heditsrc/Discretization/HDG/JacobianBoundaryCell_HDG_AuxiliaryVariable.heditsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.hsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.hsrc/Discretization/HDG/IntegrandBoundaryTrace_LinearScalar_mitLG_HDG.hsrc/Discretization/HDG/AlgebraicEquationSet_HDG.h10438327732560167c699abacb110be9ae2439301532981153000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduminor edits 2018-07-30 16:05:53 -040010438327732560167c699abacb110be9ae243930minor editseditsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.heditsrc/Discretization/HDG/IntegrandBoundaryTrace_LinearScalar_mitLG_HDG.heditsrc/Discretization/HDG/AlgebraicEquationSet_HDG.hsrc/Adaptation/MOESS/NLOPT/ImpliedMetric_Optimizer_NLOPT.cppsrc/Adaptation/MOESS/NodalMetrics.cppsrc/Adaptation/MOESS/NodalMetrics.hsrc/Adaptation/MOESS/MOESS.hsrc/Adaptation/MeshAdapter.cppsrc/Meshing/avro/MesherInterface_avro.cppsrc/Adaptation/MOESS/MOESS.cppsrc/Meshing/avro/MesherInterface_avro.htest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cpp0f210d86a9fdc40da4dcaf2918d4728ed28ccb171532982769000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edutesting with avro 2018-07-30 16:32:49 -04000f210d86a9fdc40da4dcaf2918d4728ed28ccb17testing with avroedittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppeditsrc/Adaptation/MOESS/NLOPT/ImpliedMetric_Optimizer_NLOPT.cppeditsrc/Adaptation/MOESS/NodalMetrics.heditsrc/Meshing/avro/MesherInterface_avro.cppeditsrc/Meshing/avro/MesherInterface_avro.heditsrc/Adaptation/MOESS/MOESS.heditsrc/Adaptation/MOESS/MOESS.cppeditsrc/Adaptation/MeshAdapter.cppeditsrc/Adaptation/MOESS/NodalMetrics.cppsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.h46c52a29352cb184bc9dd1af63eb8679247684501532984784000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduShouldn't have removed an include 2018-07-30 17:06:24 -040046c52a29352cb184bc9dd1af63eb867924768450Shouldn't have removed an includeeditsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.hsrc/pde/ArtificialViscosity/AVSensor_Source2D.hsrc/pde/NS/OutputEuler2D.hsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cpptest/unit/UnitGrids/XField3D_ForwardStep_Hex_X1.hsrc/pde/NS/BCEulermitAVDiffusion2D.htest/sandbox/Solve2D_DGBR2_Euler_ForwardStep_AV_ST_toy.cppsrc/pde/NS/Q2DConservative.htest/unit/UnitGrids/CMakeLists.txttest/sandbox/Solve1D_DGBR2_Line_Euler_ShuOsher_AV_ST_toy.cppsrc/pde/NS/BCEuler2D.hsrc/pde/NS/PDEEulermitAVDiffusion2D.hsrc/pde/NS/BCEuler2D_mitState.hsrc/pde/NS/Q2DEntropy.hsrc/pde/NS/Q2DPrimitiveRhoPressure.htest/unit/UnitGrids/XField3D_ForwardStep_Hex_X1.cpptest/sandbox/Solve1D_DGBR2_Line_Euler_Lax_AV_ST_toy.cppsrc/pde/NS/BCEuler2D.cppsrc/pde/NS/BCEuler2D_Solution.cppsrc/pde/NS/SolutionFunction_NavierStokes2D.hsrc/pde/NS/Q2DPrimitiveSurrogate.htest/sandbox/Solve1D_DGBR2_Line_Euler_Sod_AV_ST_toy.cppsrc/pde/NS/SolutionFunction_Euler2D.hsrc/pde/NS/PDEEuler2D.hdb96d950a19d365b7f203943faf34a27301e47a71533013994000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduForward facing step unit grid and spacetime euler2d artificial viscosity 2018-07-30 23:13:14 -0600db96d950a19d365b7f203943faf34a27301e47a7Forward facing step unit grid and spacetime euler2d artificial viscosityeditsrc/pde/ArtificialViscosity/AVSensor_Source2D.heditsrc/pde/NS/SolutionFunction_Euler2D.heditsrc/pde/NS/BCEuler2D.heditsrc/pde/NS/Q2DPrimitiveRhoPressure.heditsrc/pde/NS/Q2DConservative.hedittest/sandbox/Solve1D_DGBR2_Line_Euler_Sod_AV_ST_toy.cppeditsrc/pde/NS/SolutionFunction_NavierStokes2D.heditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppeditsrc/pde/NS/BCEulermitAVDiffusion2D.hedittest/sandbox/Solve1D_DGBR2_Line_Euler_ShuOsher_AV_ST_toy.cppeditsrc/pde/NS/BCEuler2D_Solution.cppedittest/sandbox/Solve1D_DGBR2_Line_Euler_Lax_AV_ST_toy.cppeditsrc/pde/NS/BCEuler2D.cppaddtest/unit/UnitGrids/XField3D_ForwardStep_Hex_X1.haddtest/unit/UnitGrids/XField3D_ForwardStep_Hex_X1.cppeditsrc/pde/NS/BCEuler2D_mitState.heditsrc/pde/NS/Q2DEntropy.heditsrc/pde/NS/OutputEuler2D.hedittest/unit/UnitGrids/CMakeLists.txteditsrc/pde/NS/PDEEuler2D.heditsrc/pde/NS/PDEEulermitAVDiffusion2D.haddtest/sandbox/Solve2D_DGBR2_Euler_ForwardStep_AV_ST_toy.cppeditsrc/pde/NS/Q2DPrimitiveSurrogate.htest/unit/UnitGrids/XField3D_ForwardStep_Hex_X1.cpp94ae7e68ea2f0ba508fb85526af39bf8a8042c261533014064000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduTurned off some debug output 2018-07-30 23:14:24 -060094ae7e68ea2f0ba508fb85526af39bf8a8042c26Turned off some debug outputedittest/unit/UnitGrids/XField3D_ForwardStep_Hex_X1.cpptest/sandbox/Solve2D_DGBR2_Euler_ForwardStep_AV_ST_toy.cpp55e07410af314b70fc41044ae6156a97030440e21533014563000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduPETSc option for spacetime forward facing step 2018-07-30 23:22:43 -060055e07410af314b70fc41044ae6156a97030440e2PETSc option for spacetime forward facing stepedittest/sandbox/Solve2D_DGBR2_Euler_ForwardStep_AV_ST_toy.cppsrc/Field/tools/for_each_InteriorTraceGroup_Cell.hsrc/Field/Field_DG_CellBase_impl.hsrc/Field/tools/for_each_GhostBoundaryTraceGroup_Cell.hsrc/Field/FieldArea_DG_Cell_impl.hsrc/Field/CountGhostNeighbors.hfe290181752a37cf71a1bb6e7a69a686edb809e21533040622000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduWork towards Zombie DOFs 2018-07-31 08:37:02 -0400fe290181752a37cf71a1bb6e7a69a686edb809e2Work towards Zombie DOFseditsrc/Field/Field_DG_CellBase_impl.heditsrc/Field/FieldArea_DG_Cell_impl.haddsrc/Field/tools/for_each_GhostBoundaryTraceGroup_Cell.heditsrc/Field/tools/for_each_InteriorTraceGroup_Cell.haddsrc/Field/CountGhostNeighbors.hsrc/UserInterfaces/capsAIM/sansLIPAIM.cppsrc/Field/CountGhostNeighbors.hsrc/Field/FieldArea_DG_Cell_impl.hsrc/UserInterfaces/LIPSolver.cppc1f179ba9514f5a035fd21253cf2e60936a456b61533073273000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdates for LIP solver to use hinge lines 2018-07-31 17:41:13 -0400c1f179ba9514f5a035fd21253cf2e60936a456b6Updates for LIP solver to use hinge lineseditsrc/Field/CountGhostNeighbors.heditsrc/Field/FieldArea_DG_Cell_impl.heditsrc/UserInterfaces/LIPSolver.cppeditsrc/UserInterfaces/capsAIM/sansLIPAIM.cppsrc/UserInterfaces/LIPSolver.cppa2532d72d4d2d6faeb1e9fa3011653f74bc360a91533075318000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed inconsistency in LIPSolver sensitivity 2018-07-31 18:15:18 -0400a2532d72d4d2d6faeb1e9fa3011653f74bc360a9Fixed inconsistency in LIPSolver sensitivityeditsrc/UserInterfaces/LIPSolver.cpptest/sandbox/Solve2D_DGBR2_Euler_ForwardStep_AV_ST_toy.cppc91721f97f0440466085d65dcd9a8e6714f67cb91533092820000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduFixed PETSc setup in step case 2018-07-31 21:07:00 -0600c91721f97f0440466085d65dcd9a8e6714f67cb9Fixed PETSc setup in step caseedittest/sandbox/Solve2D_DGBR2_Euler_ForwardStep_AV_ST_toy.cpptest/unit/UnitGrids/XField3D_ForwardStep_Hex_X1_btest.cpp9335099999e418b0cca4ba3f6ce8a92f6c3cf7871533094788000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduUnit test for forward facing step grid 2018-07-31 21:39:48 -06009335099999e418b0cca4ba3f6ce8a92f6c3cf787Unit test for forward facing step gridaddtest/unit/UnitGrids/XField3D_ForwardStep_Hex_X1_btest.cpptest/unit/IO/pde/NS/BCEuler2D_pattern.txttest/unit/UnitGrids/XField3D_ForwardStep_Hex_X1.cpptest/unit/pde/NS/BCEuler2D_btest.cpp81fb89368a2ca010e069fd09cda8c6e4afc9d0701533095900000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduNew Euler BC unit tests 2018-07-31 21:58:20 -060081fb89368a2ca010e069fd09cda8c6e4afc9d070New Euler BC unit testsedittest/unit/UnitGrids/XField3D_ForwardStep_Hex_X1.cppedittest/unit/pde/NS/BCEuler2D_btest.cppedittest/unit/IO/pde/NS/BCEuler2D_pattern.txtsrc/Field/CountGhostNeighbors.h23fa5b0ee4c3f4dc7f625f632b043b8bd8d3f7311533130128000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed index bug for Zombies 2018-08-01 09:28:48 -040023fa5b0ee4c3f4dc7f625f632b043b8bd8d3f731Fixed index bug for Zombieseditsrc/Field/CountGhostNeighbors.hsrc/BasisFunction/CanonicalTraceToCell.hsrc/Discretization/HDG/ResidualInteriorTrace_HDG.hsrc/Field/CellToTraceAssociativity.h1c43289d23d410f720d080e70602fb6425c7d0bc1533132123000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.educommenting and formatting 2018-08-01 10:02:03 -04001c43289d23d410f720d080e70602fb6425c7d0bccommenting and formattingeditsrc/Field/CellToTraceAssociativity.heditsrc/BasisFunction/CanonicalTraceToCell.heditsrc/Discretization/HDG/ResidualInteriorTrace_HDG.hCMakeInclude/Builds/BuildTETGEN.cmake337c073caf39389c514d62268590c8b97dae19d31533137794000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduTweak for building tetgen with MSYS 2018-08-01 11:36:34 -0400337c073caf39389c514d62268590c8b97dae19d3Tweak for building tetgen with MSYSeditCMakeInclude/Builds/BuildTETGEN.cmakesrc/Field/Element/GalerkinWeightedIntegral_New.hsrc/Field/Element/ElementLine.hsrc/Discretization/HDG/ResidualCell_HDG.hsrc/Discretization/Galerkin/ResidualInteriorTrace_Galerkin.hsrc/Discretization/IntegrateInteriorTraceGroups_FieldTrace.hsrc/Discretization/HDG/ResidualInteriorTrace_HDG.h238eb28c21a4b34322205ebe7c765db43d1eaf3d1533154259000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduMinor edits on existing established code 2018-08-01 16:10:59 -0400238eb28c21a4b34322205ebe7c765db43d1eaf3dMinor edits on existing established codeeditsrc/Discretization/Galerkin/ResidualInteriorTrace_Galerkin.heditsrc/Discretization/IntegrateInteriorTraceGroups_FieldTrace.heditsrc/Field/Element/ElementLine.heditsrc/Discretization/HDG/ResidualCell_HDG.heditsrc/Field/Element/GalerkinWeightedIntegral_New.heditsrc/Discretization/HDG/ResidualInteriorTrace_HDG.hsrc/Discretization/HDG/IntegrandInteriorTrace_HDGAdvective.hsrc/Discretization/HDG/ResidualInteriorTrace_HDGAdvective.h5361dcf3f39b7904811698324d7b317f377f49c11533154395000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edudrafted interior trace integrand and residual for HDGAdvective 2018-08-01 16:13:15 -04005361dcf3f39b7904811698324d7b317f377f49c1drafted interior trace integrand and residual for HDGAdvectiveaddsrc/Discretization/HDG/IntegrandInteriorTrace_HDGAdvective.haddsrc/Discretization/HDG/ResidualInteriorTrace_HDGAdvective.hsrc/Meshing/FeFloa/MesherInterface_FeFloa.hsrc/Meshing/refine/MesherInterface_refineParams.cppsrc/Meshing/refine/MesherInterface_refine.hsrc/Meshing/refine/MesherInterface_refine.cppsrc/Meshing/refine/MesherInterface_refine_2D.cpptest/unit/Meshing/refine/refine3D_btest.cpp30c239d40c86ab6c6484ac82cf41ba320c912e3d1533175183000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded system call option for refine 2018-08-01 21:59:43 -040030c239d40c86ab6c6484ac82cf41ba320c912e3dAdded system call option for refineeditsrc/Meshing/refine/MesherInterface_refine.heditsrc/Meshing/refine/MesherInterface_refine.cppeditsrc/Meshing/FeFloa/MesherInterface_FeFloa.heditsrc/Meshing/refine/MesherInterface_refineParams.cppeditsrc/Meshing/refine/MesherInterface_refine_2D.cppedittest/unit/Meshing/refine/refine3D_btest.cpptest/unit/UnitGrids/CMakeLists.txttest/unit/UnitGrids/XField3D_ForwardStep_Hex_X1.cpptest/unit/UnitGrids/XField2D_ForwardStep_Quad_X1.htest/sandbox/Solve2D_DGBR2_Quad_Euler_ForwardFacingStep_AV_BDF_toy.cpptest/unit/UnitGrids/XField2D_ForwardStep_Quad_X1.cpptest/sandbox/Solve2D_DGBR2_Euler_ForwardStep_AV_ST_toy.cppef1e57c3cb7084b44b582b61ef638f13982472561533185097000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduMaybe BDF case for forward facing step 2018-08-01 22:44:57 -0600ef1e57c3cb7084b44b582b61ef638f1398247256Maybe BDF case for forward facing stepaddtest/unit/UnitGrids/XField2D_ForwardStep_Quad_X1.haddtest/sandbox/Solve2D_DGBR2_Quad_Euler_ForwardFacingStep_AV_BDF_toy.cppedittest/unit/UnitGrids/CMakeLists.txtedittest/unit/UnitGrids/XField3D_ForwardStep_Hex_X1.cppaddtest/unit/UnitGrids/XField2D_ForwardStep_Quad_X1.cppedittest/sandbox/Solve2D_DGBR2_Euler_ForwardStep_AV_ST_toy.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppsrc/Meshing/refine/MesherInterface_refine.hsrc/Meshing/refine/XField_refine.hsrc/Adaptation/MeshAdapter.cppsrc/Adaptation/MeshAdapter.hsrc/Meshing/refine/MesherInterface_refineParams.cppCMakeLists.txtsrc/Meshing/refine/MesherInterface_refine.cppsrc/Meshing/refine/CMakeLists.txt01cd749cf181caa46dde6662d6ad159e9624623c1533209593000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdates for calling refine with a system call 2018-08-02 07:33:13 -040001cd749cf181caa46dde6662d6ad159e9624623cUpdates for calling refine with a system calleditsrc/Meshing/refine/MesherInterface_refine.hedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppeditCMakeLists.txteditsrc/Meshing/refine/MesherInterface_refineParams.cppeditsrc/Meshing/refine/XField_refine.heditsrc/Meshing/refine/CMakeLists.txteditsrc/Adaptation/MeshAdapter.heditsrc/Adaptation/MeshAdapter.cppeditsrc/Meshing/refine/MesherInterface_refine.cppsrc/Discretization/Galerkin/JacobianInteriorTrace_Galerkin.h1667db6f8fd65fe6902f7295361e6ce10b75c0671533222447000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduMinor edit 2018-08-02 11:07:27 -04001667db6f8fd65fe6902f7295361e6ce10b75c067Minor editeditsrc/Discretization/Galerkin/JacobianInteriorTrace_Galerkin.hsrc/Discretization/HDG/JacobianInteriorTrace_HDGAdvective.hsrc/Discretization/HDG/IntegrandInteriorTrace_HDGAdvective.hsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.hsrc/Discretization/HDG/ResidualInteriorTrace_HDGAdvective.h528716b8b50db6b53ef6479e0949d14d6cd5abad1533222577000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactored/completed HDGAdvective interior trace machinery (integrand, residual, jacobian) 2018-08-02 11:09:37 -0400528716b8b50db6b53ef6479e0949d14d6cd5abadRefactored/completed HDGAdvective interior trace machinery (integrand, residual, jacobian)addsrc/Discretization/HDG/JacobianInteriorTrace_HDGAdvective.heditsrc/Discretization/HDG/IntegrandInteriorTrace_HDGAdvective.haddsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.heditsrc/Discretization/HDG/ResidualInteriorTrace_HDGAdvective.hsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.hsrc/Discretization/HDG/IntegrandBoundaryTrace_None_HDGAdvective.hsrc/Discretization/HDG/IntegrandBoundaryTrace_LinearScalar_mitLG_HDGAdvective.hsrc/Discretization/HDG/ResidualBoundaryTrace_FieldTrace_HDGAdvective.hsrc/Discretization/HDG/IntegrandBoundaryTrace_LinearScalar_sansLG_HDGAdvective.hsrc/Discretization/HDG/ResidualBoundaryTrace_Dispatch_HDG.hsrc/Discretization/HDG/ResidualBoundaryTrace_Dispatch_HDGAdvective.hsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective.hsrc/Discretization/HDG/ResidualBoundaryTrace_HDGAdvective.hsrc/Discretization/HDG/Integrand_HDG_fwd.hsrc/Discretization/HDG/IntegrandBoundaryTrace_Flux_mitState_HDGAdvective.h075d89209dad853079ee5109441cab9ab2d8d12d1533223105000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduResidualBoundaryTrace stuff compiling for HDGAdvective 2018-08-02 11:18:25 -0400075d89209dad853079ee5109441cab9ab2d8d12dResidualBoundaryTrace stuff compiling for HDGAdvectiveaddsrc/Discretization/HDG/IntegrandBoundaryTrace_LinearScalar_mitLG_HDGAdvective.haddsrc/Discretization/HDG/ResidualBoundaryTrace_HDGAdvective.haddsrc/Discretization/HDG/IntegrandBoundaryTrace_Flux_mitState_HDGAdvective.heditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.heditsrc/Discretization/HDG/Integrand_HDG_fwd.haddsrc/Discretization/HDG/ResidualBoundaryTrace_Dispatch_HDGAdvective.haddsrc/Discretization/HDG/ResidualBoundaryTrace_FieldTrace_HDGAdvective.haddsrc/Discretization/HDG/IntegrandBoundaryTrace_LinearScalar_sansLG_HDGAdvective.haddsrc/Discretization/HDG/IntegrandBoundaryTrace_None_HDGAdvective.heditsrc/Discretization/HDG/ResidualBoundaryTrace_Dispatch_HDG.haddsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective.htest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cpptest/unit/Meshing/refine/CMakeLists.txtsrc/Meshing/refine/MesherInterface_refine.cpptest/unit/Adaptation/MOESS/CMakeLists.txttest/unit/Adaptation/MOESS/TAO/CMakeLists.txttest/unit/Meshing/refine/refine3D_btest.cpp47646bad15e680ab6ba97fb2f7645c7f81f86aa31533227346000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMore refine fixes 2018-08-02 12:29:06 -040047646bad15e680ab6ba97fb2f7645c7f81f86aa3More refine fixesedittest/unit/Meshing/refine/CMakeLists.txtedittest/unit/Adaptation/MOESS/CMakeLists.txteditsrc/Meshing/refine/MesherInterface_refine.cppedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppedittest/unit/Adaptation/MOESS/TAO/CMakeLists.txtedittest/unit/Meshing/refine/refine3D_btest.cppsrc/UserInterfaces/capsAIM/sansLIPAIM.cpptest/system/Adaptation/CMakeLists.txt0579341590839099bd0463402e1d786056025bd21533253056000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduOne more refine fix. And some sansLIPAIM fixes. 2018-08-02 19:37:36 -04000579341590839099bd0463402e1d786056025bd2One more refine fix. And some sansLIPAIM fixes.editsrc/UserInterfaces/capsAIM/sansLIPAIM.cppedittest/system/Adaptation/CMakeLists.txttest/unit/Meshing/refine/refine3D_btest.cppcc6d1e9042b39a7038af7ac5adae8f82ba69a4451533253363000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMissing include 2018-08-02 19:42:43 -0400cc6d1e9042b39a7038af7ac5adae8f82ba69a445Missing includeedittest/unit/Meshing/refine/refine3D_btest.cpptest/unit/Meshing/refine/refine3D_btest.cppc3bd5e141021f96c7d25973ef61071b82d2057111533257709000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduCorrect missing include 2018-08-02 20:55:09 -0400c3bd5e141021f96c7d25973ef61071b82d205711Correct missing includeedittest/unit/Meshing/refine/refine3D_btest.cppsrc/UserInterfaces/capsAIM/sansLIPAIM.cpp8b448d171c8b2525104c95b1f0fd6da76e3811fd1533314149000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMinor fix 2018-08-03 12:35:49 -04008b448d171c8b2525104c95b1f0fd6da76e3811fdMinor fixeditsrc/UserInterfaces/capsAIM/sansLIPAIM.cppsrc/Discretization/HDG/JacobianInteriorTrace_HDGAdvective.hsrc/Discretization/Galerkin/JacobianBoundaryTrace_Galerkin.hsrc/Discretization/HDG/IntegrandInteriorTrace_HDGAdvective.h6577b07cd569b67040b66b37ea6733accd7b92d81533325896000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactored interior trace machinery for HDGAdvective 2018-08-03 15:51:36 -04006577b07cd569b67040b66b37ea6733accd7b92d8Refactored interior trace machinery for HDGAdvectiveeditsrc/Discretization/Galerkin/JacobianBoundaryTrace_Galerkin.heditsrc/Discretization/HDG/IntegrandInteriorTrace_HDGAdvective.heditsrc/Discretization/HDG/JacobianInteriorTrace_HDGAdvective.htest/system/Asymptotic/ErrorOrder_1D_HDGAdvective_Advection_btest.cppsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.hsrc/Discretization/HDG/IntegrandBoundaryTrace_None_HDGAdvective.hsrc/Discretization/HDG/ResidualBoundaryTrace_FieldTrace_HDGAdvective.hsrc/Discretization/HDG/IntegrandBoundaryTrace_LinearScalar_sansLG_HDGAdvective.hsrc/Discretization/HDG/ResidualBoundaryTrace_HDGAdvective.hsrc/Discretization/HDG/JacobianBoundaryTrace_Dispatch_HDGAdvective.hsrc/Discretization/HDG/JacobianBoundaryTrace_HDGAdvective.hsrc/Discretization/HDG/JacobianBoundaryTrace_FieldTrace_HDGAdvective.hsrc/Discretization/HDG/IntegrandBoundaryTrace_Flux_mitState_HDGAdvective.h68174bdd7f8de9fcddcdcf413af899f5259228a01533326176000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduHDGAdvective equation set compiiles now with residuals and jacobians 2018-08-03 15:56:16 -040068174bdd7f8de9fcddcdcf413af899f5259228a0HDGAdvective equation set compiiles now with residuals and jacobiansaddsrc/Discretization/HDG/JacobianBoundaryTrace_FieldTrace_HDGAdvective.heditsrc/Discretization/HDG/ResidualBoundaryTrace_FieldTrace_HDGAdvective.haddtest/system/Asymptotic/ErrorOrder_1D_HDGAdvective_Advection_btest.cppeditsrc/Discretization/HDG/ResidualBoundaryTrace_HDGAdvective.heditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.heditsrc/Discretization/HDG/IntegrandBoundaryTrace_LinearScalar_sansLG_HDGAdvective.haddsrc/Discretization/HDG/JacobianBoundaryTrace_Dispatch_HDGAdvective.heditsrc/Discretization/HDG/IntegrandBoundaryTrace_Flux_mitState_HDGAdvective.heditsrc/Discretization/HDG/IntegrandBoundaryTrace_None_HDGAdvective.haddsrc/Discretization/HDG/JacobianBoundaryTrace_HDGAdvective.hsrc/Discretization/HDG/IntegrandBoundaryTrace_Flux_mitState_HDGAdvective.hsrc/Discretization/HDG/ResidualInteriorTrace_HDGAdvective.h9180fce28758b2fd234ed36682a661ef41f93aff1533330929000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduminor refactoring 2018-08-03 17:15:29 -04009180fce28758b2fd234ed36682a661ef41f93affminor refactoringeditsrc/Discretization/HDG/IntegrandBoundaryTrace_Flux_mitState_HDGAdvective.heditsrc/Discretization/HDG/ResidualInteriorTrace_HDGAdvective.htest/system/Asymptotic/ErrorOrder_1D_HDGAdvective_Advection_btest.cppsrc/Discretization/HDG/IntegrandInteriorTrace_HDGAdvective.htest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBL_Panel_btest.cppsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion1D.hsrc/pde/AnalyticFunction/ScalarFunction1D.hsrc/Discretization/HDG/JacobianInteriorTrace_HDGAdvective.hsrc/Discretization/HDG/IntegrandBoundaryTrace_Flux_mitState_HDGAdvective.hc27d889bcefb85d1f6a5c24b504b9d6aed9a6bd61533404787000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduCleaned up HDGAdvective test case, and some other minor refactoring 2018-08-04 13:46:27 -0400c27d889bcefb85d1f6a5c24b504b9d6aed9a6bd6Cleaned up HDGAdvective test case, and some other minor refactoringeditsrc/Discretization/HDG/IntegrandBoundaryTrace_Flux_mitState_HDGAdvective.hedittest/system/Asymptotic/ErrorOrder_1D_HDGAdvective_Advection_btest.cppeditsrc/Discretization/HDG/JacobianInteriorTrace_HDGAdvective.heditsrc/pde/AnalyticFunction/ScalarFunction1D.hedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBL_Panel_btest.cppeditsrc/Discretization/HDG/IntegrandInteriorTrace_HDGAdvective.heditsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion1D.hsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.hsrc/Discretization/HDG/IntegrandInteriorTrace_HDGAdvective.htest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Advection_btest.cppsrc/Discretization/HDG/ResidualInteriorTrace_HDGAdvective.hsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective.hsrc/Discretization/HDG/JacobianInteriorTrace_HDGAdvective.hsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.h2c190d850f5da0a5fa44f6bde738cdbe926875ac1533493541000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFound and fixed a bug when conducting ping test: forgot to set qIfldElemTrace. Other minor refactoring 2018-08-05 14:25:41 -04002c190d850f5da0a5fa44f6bde738cdbe926875acFound and fixed a bug when conducting ping test: forgot to set qIfldElemTrace. Other minor refactoringaddtest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Advection_btest.cppeditsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.heditsrc/Discretization/HDG/JacobianInteriorTrace_HDGAdvective.heditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.heditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective.heditsrc/Discretization/HDG/IntegrandInteriorTrace_HDGAdvective.heditsrc/Discretization/HDG/ResidualInteriorTrace_HDGAdvective.hsrc/Discretization/HDG/JacobianBoundaryTrace_HDGAdvective.hf1e7aefc5fca3c4d566b61c724f3fe7c1110e2051533495971000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduBug fix in HDGAdvective boundary jacobian 2018-08-05 15:06:11 -0400f1e7aefc5fca3c4d566b61c724f3fe7c1110e205Bug fix in HDGAdvective boundary jacobianeditsrc/Discretization/HDG/JacobianBoundaryTrace_HDGAdvective.htest/system/Asymptotic/ErrorOrder_1D_HDGAdvective_Advection_btest.cppsrc/Discretization/HDG/IntegrandBoundaryTrace_None_HDGAdvective.hsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.hsrc/Discretization/HDG/Instantiate/AlgebraicEquationSet_HDGAdvective_Advection1D_AUSU.cpptest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Advection_btest.cppsrc/Discretization/CMakeLists.txttest/system/IO/ErrorOrder/ErrorOrder_1D_HDGAdvective_Advection_FullTest.txttest/system/IO/ErrorOrder/ErrorOrder_1D_HDGAdvective_Advection_MinTest.txtsrc/Discretization/HDG/IntegrandBoundaryTrace_Flux_mitState_HDGAdvective.hf7a9f6b324be075339c7c089ee530d883efe64a81533496934000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduCompleted ping tests and ErrorOrder test for HDGAdvective (pure advection with source) 2018-08-05 15:22:14 -0400f7a9f6b324be075339c7c089ee530d883efe64a8Completed ping tests and ErrorOrder test for HDGAdvective (pure advection with source)edittest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Advection_btest.cppaddtest/system/IO/ErrorOrder/ErrorOrder_1D_HDGAdvective_Advection_FullTest.txteditsrc/Discretization/HDG/IntegrandBoundaryTrace_None_HDGAdvective.heditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.haddsrc/Discretization/HDG/Instantiate/AlgebraicEquationSet_HDGAdvective_Advection1D_AUSU.cppeditsrc/Discretization/CMakeLists.txteditsrc/Discretization/HDG/IntegrandBoundaryTrace_Flux_mitState_HDGAdvective.hedittest/system/Asymptotic/ErrorOrder_1D_HDGAdvective_Advection_btest.cppaddtest/system/IO/ErrorOrder/ErrorOrder_1D_HDGAdvective_Advection_MinTest.txtsrc/UserInterfaces/LIPSolver.hsrc/Meshing/TetGen/makeTetGenModel.cppsrc/UserInterfaces/capsAIM/sansLIPAIM.cppsrc/UserInterfaces/LIPSolver.cpp0225f4b31491885a501fdc22b389fd7137bcab131533513701000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMade the volume generator option for sansLIP. 2018-08-05 20:01:41 -04000225f4b31491885a501fdc22b389fd7137bcab13Made the volume generator option for sansLIP.editsrc/UserInterfaces/capsAIM/sansLIPAIM.cppeditsrc/UserInterfaces/LIPSolver.heditsrc/Meshing/TetGen/makeTetGenModel.cppeditsrc/UserInterfaces/LIPSolver.cppsrc/UserInterfaces/LIPSolver.h9221e4785ae6c48008f96fd6f16d730669e181261533517911000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduDefault meshesr for sansLIP 2018-08-05 21:11:51 -04009221e4785ae6c48008f96fd6f16d730669e18126Default meshesr for sansLIPeditsrc/UserInterfaces/LIPSolver.htest/unit/UnitGrids/CMakeLists.txttest/sandbox/Adapt2D_DGBR2_RANSSA_Joukowski_UROP_toy.cpptest/sandbox/duct_meshing_UROP_toy.cpptest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_X1.cpptest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_X1.h59fe31f3d96d585436f5ff15f7ed1d09d74c27ea1533570194000https://acdl.mit.edu/csi/user/jzavalajzavalajzavala@mit.eduAdded Lagrange-basis duct mesh creator and corresponding sandbox test file. Minor changes on Adapt2D toy file. 2018-08-06 11:43:14 -040059fe31f3d96d585436f5ff15f7ed1d09d74c27eaAdded Lagrange-basis duct mesh creator and corresponding sandbox test file.addtest/sandbox/duct_meshing_UROP_toy.cppaddtest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_X1.cppedittest/unit/UnitGrids/CMakeLists.txtedittest/sandbox/Adapt2D_DGBR2_RANSSA_Joukowski_UROP_toy.cppaddtest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_X1.hsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective_impl.hsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.htest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_NACA0004_LamiBL_btest.cppa011b02bbaefbe2f0e8edb83e7ac1daf4a1edb0c1533581866000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduminor refactoring 2018-08-06 14:57:46 -0400a011b02bbaefbe2f0e8edb83e7ac1daf4a1edb0cminor refactoringeditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.hedittest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_NACA0004_LamiBL_btest.cppeditsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective_impl.hsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective.htest/system/Asymptotic/ErrorOrder_1D_HDGAdvective_Advection_btest.cppsrc/Discretization/HDG/Instantiate/AlgebraicEquationSet_HDGAdvective_Advection1D_AUSU.cppsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.htest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Advection_btest.cpp264c092e145166ddf4bb97c60d3efd71fe5d09771533589052000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded discretization tag template to HDGAdvective AES class 2018-08-06 16:57:32 -0400264c092e145166ddf4bb97c60d3efd71fe5d0977Added discretization tag template to HDGAdvective AES classeditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective.hedittest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Advection_btest.cppeditsrc/Discretization/HDG/Instantiate/AlgebraicEquationSet_HDGAdvective_Advection1D_AUSU.cppedittest/system/Asymptotic/ErrorOrder_1D_HDGAdvective_Advection_btest.cppeditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.hsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective.hsrc/Discretization/Galerkin/IntegrandCell_ProjectFunction.hsrc/Discretization/HDG/IntegrandInteriorTrace_HDGAdvective.hsrc/Discretization/HDG/Integrand_HDG_fwd.hafdf803b72daf2b69b3bd695c438df9ed98498ef1533597786000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduGeneralized HDGAdvective interior trace integrand class 2018-08-06 19:23:06 -0400afdf803b72daf2b69b3bd695c438df9ed98498efGeneralized HDGAdvective interior trace integrand classeditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective.heditsrc/Discretization/HDG/Integrand_HDG_fwd.heditsrc/Discretization/Galerkin/IntegrandCell_ProjectFunction.heditsrc/Discretization/HDG/IntegrandInteriorTrace_HDGAdvective.hsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective.htest/system/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_NACA0004_LamiBL_btest.cppsrc/pde/IBL/BCIBL2D.hsrc/Discretization/HDG/IntegrandInteriorTrace_HDGAdvective.hsrc/pde/IBL/BCIBL2D.cppsrc/Field/FieldLine_DG_Trace_Instantiate_2D.cppa764b2d7b7bc49ccc6ab62d405e8f8cec4105f1c1533600296000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduGot HDGAdvective cell and interior trace to compile 2018-08-06 20:04:56 -0400a764b2d7b7bc49ccc6ab62d405e8f8cec4105f1cGot HDGAdvective cell and interior trace to compileeditsrc/Discretization/HDG/IntegrandInteriorTrace_HDGAdvective.heditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective.heditsrc/pde/IBL/BCIBL2D.cppaddtest/system/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_NACA0004_LamiBL_btest.cppeditsrc/Field/FieldLine_DG_Trace_Instantiate_2D.cppeditsrc/pde/IBL/BCIBL2D.hsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective.htest/system/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_NACA0004_LamiBL_btest.cppsrc/pde/IBL/BCIBL2D.hsrc/Discretization/HDG/IntegrandBoundaryTrace_None_HDGAdvective.hdb522687031c981302d3472001af2dba5e9054c21533602914000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactored None BC for HDGAdvective 2018-08-06 20:48:34 -0400db522687031c981302d3472001af2dba5e9054c2Refactored None BC for HDGAdvectiveeditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective.heditsrc/pde/IBL/BCIBL2D.hedittest/system/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_NACA0004_LamiBL_btest.cppeditsrc/Discretization/HDG/IntegrandBoundaryTrace_None_HDGAdvective.hsrc/UserInterfaces/capsAIM/sansLIPAIM.cppcde165f7c1934620a3e278dd374fe4e4daea89361533606946000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduWorking on a bug in sansLIPAIM 2018-08-06 21:55:46 -0400cde165f7c1934620a3e278dd374fe4e4daea8936Working on a bug in sansLIPAIMeditsrc/UserInterfaces/capsAIM/sansLIPAIM.cpptest/unit/Discretization/HDG/CMakeLists.txttest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Line_IBL_airfoilOnly_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_IBL_Panel_btest.cpp82a621ba7296e8f0fa49e53daa7d161284e3665c1533607614000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded ping test to HDGAdvective for uncoupled IBL on airfoil only 2018-08-06 22:06:54 -040082a621ba7296e8f0fa49e53daa7d161284e3665cAdded ping test to HDGAdvective for uncoupled IBL on airfoil onlyedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_IBL_Panel_btest.cppaddtest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Line_IBL_airfoilOnly_btest.cppedittest/unit/Discretization/HDG/CMakeLists.txtsrc/UserInterfaces/capsAIM/sansLIPAIM.cppbae280da991f1c9247e653892f234047b348086e1533609996000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.edusansLIPAIM fix 2018-08-06 22:46:36 -0400bae280da991f1c9247e653892f234047b348086esansLIPAIM fixeditsrc/UserInterfaces/capsAIM/sansLIPAIM.cppsrc/UserInterfaces/capsAIM/sansLIPAIM.cpp102746becb3f94db76a717a6bd5b0834b64c274a1533616104000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed sansLIP data transfer with hinge bodies 2018-08-07 00:28:24 -0400102746becb3f94db76a717a6bd5b0834b64c274aFixed sansLIP data transfer with hinge bodieseditsrc/UserInterfaces/capsAIM/sansLIPAIM.cppsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.h2ca13073ba298092d2fe326b25e4e4727718ff521533649886000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduUse hacky isValidState checks for HDGAdvective: not checking trace variables yet 2018-08-07 09:51:26 -04002ca13073ba298092d2fe326b25e4e4727718ff52Use hacky isValidState checks for HDGAdvective: not checking trace variables yeteditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.htest/sandbox/Solve2D_DGAdvective_Triangle_Euler_SmoothBump_toy.cpptest/sandbox/duct_meshing_UROP_toy.cpptest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_X1.cpptest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_X1.h4f469ead90d00e5399355ddd40c3b7b065210eaa1533654720000https://acdl.mit.edu/csi/user/jzavalajzavalajzavala@mit.eduFixed formatting errors. 2018-08-07 11:12:00 -04004f469ead90d00e5399355ddd40c3b7b065210eaaFixed formatting errors.edittest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_X1.cppedittest/sandbox/duct_meshing_UROP_toy.cppedittest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_X1.hedittest/sandbox/Solve2D_DGAdvective_Triangle_Euler_SmoothBump_toy.cppsrc/pde/IBL/PDEIBL2D.cppsrc/Discretization/HDG/IntegrandInteriorTrace_HDGAdvective.hsrc/Discretization/HDG/IntegrandBoundaryTrace_None_HDGAdvective.hsrc/pde/IBL/PDEIBL2D.hsrc/pde/IBL/PDEIBL2D_impl.htest/system/IO/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_naca0004_ne64_p1_airfoil_Test_DGvsHDG.txttest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_NACA0004_LamiBL_btest.cppsrc/pde/NDConvert/PDENDConvertSpace2D.htest/system/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_NACA0004_LamiBL_btest.cpp922e1a8d95f7a960cda95f56bddec9eb3a54a65c1533666307000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduHDGAdvective uncoupled IBL (with airfoil only) now works and matches DG IBL 2018-08-07 14:25:07 -0400922e1a8d95f7a960cda95f56bddec9eb3a54a65cHDGAdvective uncoupled IBL (with airfoil only) now works and matches DG IBLeditsrc/pde/NDConvert/PDENDConvertSpace2D.haddtest/system/IO/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_naca0004_ne64_p1_airfoil_Test_DGvsHDG.txteditsrc/Discretization/HDG/IntegrandInteriorTrace_HDGAdvective.hedittest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_NACA0004_LamiBL_btest.cppedittest/system/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_NACA0004_LamiBL_btest.cppeditsrc/pde/IBL/PDEIBL2D.cppeditsrc/Discretization/HDG/IntegrandBoundaryTrace_None_HDGAdvective.haddsrc/pde/IBL/PDEIBL2D_impl.heditsrc/pde/IBL/PDEIBL2D.htest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Line_IBL_airfoilOnly_btest.cpp10eec08dbea101cf6e0aaec5beb8e404f0da7adf1533666379000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed an include 2018-08-07 14:26:19 -040010eec08dbea101cf6e0aaec5beb8e404f0da7adfFixed an includeedittest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Line_IBL_airfoilOnly_btest.cppsrc/Adaptation/MOESS/NLOPT/MOESS_Metric_Optimizer_NLOPT.cpptest/sandbox/CMakeLists.txtsrc/Meshing/Metric/MetricOps.hsrc/Meshing/Adaptive/AnalyticMetrics/MetricField.hsrc/Adaptation/MOESS/MOESS.hsrc/Adaptation/MOESS/MetricError.hsrc/Adaptation/MeshAdapter.cppsrc/Adaptation/MeshAdapter.hsrc/Adaptation/MOESS/MetricError.cppsrc/Adaptation/CMakeLists.txtsrc/Adaptation/MOESS/NLOPT/ImpliedMetric_Optimizer_NLOPT.cppsrc/Adaptation/MOESS/NodalMetrics.hsrc/Adaptation/MOESS/NLOPT/MOESS_Metric_Optimizer_NLOPT.hsrc/Adaptation/MOESS/MOESS.cppsrc/Meshing/avro/MesherInterface_avro.cppsrc/Meshing/avro/MesherInterface_avro.h34678adcbf32006b606f3b3055218bc50336e7d41533668472000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edumoess to minimize distance between implied metric and target field 2018-08-07 15:01:12 -040034678adcbf32006b606f3b3055218bc50336e7d4moess to minimize distance between implied metric and target fieldeditsrc/Adaptation/CMakeLists.txteditsrc/Adaptation/MOESS/NodalMetrics.haddsrc/Adaptation/MOESS/MetricError.cppedittest/sandbox/CMakeLists.txtaddsrc/Adaptation/MOESS/NLOPT/MOESS_Metric_Optimizer_NLOPT.haddsrc/Adaptation/MOESS/MetricError.haddsrc/Meshing/Adaptive/AnalyticMetrics/MetricField.heditsrc/Adaptation/MOESS/MOESS.cppeditsrc/Adaptation/MOESS/NLOPT/ImpliedMetric_Optimizer_NLOPT.cppaddsrc/Adaptation/MOESS/NLOPT/MOESS_Metric_Optimizer_NLOPT.cppeditsrc/Adaptation/MeshAdapter.cppeditsrc/Adaptation/MOESS/MOESS.heditsrc/Meshing/Metric/MetricOps.heditsrc/Meshing/avro/MesherInterface_avro.heditsrc/Adaptation/MeshAdapter.heditsrc/Meshing/avro/MesherInterface_avro.cppsrc/Adaptation/MOESS/MOESS.cppsrc/Adaptation/MOESS/NLOPT/MOESS_Metric_Optimizer_NLOPT.cppsrc/Adaptation/MOESS/MetricError.cppsrc/Topology/ElementTopology.cppsrc/Topology/ElementTopology.h0788e73588979378bbfdf806c6eb33775308799b1533671725000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edumove to new branch 2018-08-07 15:55:25 -04000788e73588979378bbfdf806c6eb33775308799bmove to new brancheditsrc/Adaptation/MOESS/NLOPT/MOESS_Metric_Optimizer_NLOPT.cppeditsrc/Adaptation/MOESS/MOESS.cppeditsrc/Adaptation/MOESS/MetricError.cppeditsrc/Topology/ElementTopology.heditsrc/Topology/ElementTopology.cppsrc/Discretization/Galerkin/IntegrandBoundaryTrace_WakeMatch_Galerkin_IBL.hsrc/pde/IBL/BCIBL2D.hsrc/pde/IBL/BCIBL2D.cppsrc/Discretization/Galerkin/AlgebraicEquationSet_HubTrace_Galerkin.he2b1b0f6660b189fc7c0ede2e61d0624040fd7571533675495000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduminor cleanup 2018-08-07 16:58:15 -0400e2b1b0f6660b189fc7c0ede2e61d0624040fd757minor cleanupeditsrc/Discretization/Galerkin/AlgebraicEquationSet_HubTrace_Galerkin.heditsrc/pde/IBL/BCIBL2D.heditsrc/pde/IBL/BCIBL2D.cppeditsrc/Discretization/Galerkin/IntegrandBoundaryTrace_WakeMatch_Galerkin_IBL.hsrc/Topology/ElementTopology.hsrc/Meshing/gmsh/GMSHtoSANS.cpp5cdbb946c0820e1ca6549c6d9d70a4c8daafb07a1533687690000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edua few (very simple) pentatope things 2018-08-07 20:21:30 -04005cdbb946c0820e1ca6549c6d9d70a4c8daafb07aa few (very simple) pentatope thingseditsrc/Topology/ElementTopology.heditsrc/Meshing/gmsh/GMSHtoSANS.cppsrc/Adaptation/MOESS/MOESS.cppsrc/Adaptation/MOESS/NLOPT/MOESS_Metric_Optimizer_NLOPT.cppsrc/Adaptation/MOESS/MetricError.cppsrc/Meshing/Metric/MetricOps.hsrc/Adaptation/MeshAdapter.cppb72648d6cf7ea6879ed52de4fa5c38fc01430b6a1533687718000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edumetric optimisation to match target metric 2018-08-07 20:21:58 -0400b72648d6cf7ea6879ed52de4fa5c38fc01430b6ametric optimisation to match target metriceditsrc/Adaptation/MeshAdapter.cppeditsrc/Adaptation/MOESS/NLOPT/MOESS_Metric_Optimizer_NLOPT.cppeditsrc/Adaptation/MOESS/MOESS.cppeditsrc/Adaptation/MOESS/MetricError.cppeditsrc/Meshing/Metric/MetricOps.hsrc/Meshing/Metric/MetricOps.h89877ea5a417631b084fdf4214148d219f5ac6091533687751000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edudelete bad stuff 2018-08-07 20:22:31 -040089877ea5a417631b084fdf4214148d219f5ac609delete bad stuffeditsrc/Meshing/Metric/MetricOps.htest/sandbox/Adapt2D_DGBR2_RANSSA_Joukowski_UROP_toy.cpptest/sandbox/Solve2D_DGAdvective_Triangle_Euler_SmoothBump_toy.cpptest/sandbox/duct_meshing_UROP_toy.cpptest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_X1.h89295a9a06a3044dbf2f7a419a8b69ee1f6f23cf1533694178000https://acdl.mit.edu/csi/user/jzavalajzavalajzavala@mit.eduFixed more formatting errors. 2018-08-07 22:09:38 -040089295a9a06a3044dbf2f7a419a8b69ee1f6f23cfFixed more formatting errors.edittest/sandbox/duct_meshing_UROP_toy.cppedittest/sandbox/Adapt2D_DGBR2_RANSSA_Joukowski_UROP_toy.cppedittest/sandbox/Solve2D_DGAdvective_Triangle_Euler_SmoothBump_toy.cppedittest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_X1.htest/sandbox/duct_meshing_UROP_toy.cpptest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_Xq.cpptest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_X1.cpptest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_X1.htest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_Xq.hda6de1355b62744a707d18ab2fcfd65bddc3dc1a1533710445000https://acdl.mit.edu/csi/user/jzavalajzavalajzavala@mit.eduRenamed duct mesh generator header and source files and edited corresponding includes. 2018-08-08 02:40:45 -0400da6de1355b62744a707d18ab2fcfd65bddc3dc1aRenamed duct mesh generator header and source files and edited corresponding includes.deletetest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_X1.haddtest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_Xq.cppaddtest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_Xq.hedittest/sandbox/duct_meshing_UROP_toy.cppdeletetest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_X1.cppsrc/Meshing/avro/MesherInterface_avro.cppsrc/Adaptation/MOESS/MOESS.cppsrc/Adaptation/MOESS/NLOPT/MOESS_Metric_Optimizer_NLOPT.cppsrc/Adaptation/MOESS/MetricError.cppsrc/Adaptation/MeshAdapter.cpp0ddc3b3cc58bbefbaef176129e0239cd19ee07ab1533725475000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edutesting with metric optimizer, will definitely fail jenkins 2018-08-08 06:51:15 -04000ddc3b3cc58bbefbaef176129e0239cd19ee07abtesting with metric optimizer, will definitely fail jenkinseditsrc/Meshing/avro/MesherInterface_avro.cppeditsrc/Adaptation/MOESS/MOESS.cppeditsrc/Adaptation/MOESS/MetricError.cppeditsrc/Adaptation/MOESS/NLOPT/MOESS_Metric_Optimizer_NLOPT.cppeditsrc/Adaptation/MeshAdapter.cpptest/sandbox/CMakeLists.txtdf34dfed8ed51100d7ad20c8db74f89c6b1e1c761533725600000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduforgot to remove cmake add_subdir for my sandbox, will gitignore 2018-08-08 06:53:20 -0400df34dfed8ed51100d7ad20c8db74f89c6b1e1c76forgot to remove cmake add_subdir for my sandbox, will gitignoreedittest/sandbox/CMakeLists.txtsrc/Adaptation/MOESS/SolverInterface_MetricError.hsrc/Adaptation/MOESS/NLOPT/MOESS_Metric_Optimizer_NLOPT.cpp21c498109a14a89a4503ba271f851da435aef90c1533728460000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduvera fixes, missing file 2018-08-08 07:41:00 -040021c498109a14a89a4503ba271f851da435aef90cvera fixes, missing fileaddsrc/Adaptation/MOESS/SolverInterface_MetricError.heditsrc/Adaptation/MOESS/NLOPT/MOESS_Metric_Optimizer_NLOPT.cppsrc/Adaptation/MOESS/MOESS.cppsrc/Adaptation/MOESS/MetricError.hb867098212ee1e46135d6b7e5db071dc82163b411533729603000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edutry to fix invalid initializations 2018-08-08 08:00:03 -0400b867098212ee1e46135d6b7e5db071dc82163b41try to fix invalid initializationseditsrc/Adaptation/MOESS/MOESS.cppeditsrc/Adaptation/MOESS/MetricError.hsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.htest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Line_IBL_airfoilOnly_btest.cppsrc/pde/IBL/PDEIBL2D_impl.htest/system/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_NACA0004_LamiBL_btest.cppsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective.hsrc/Discretization/HDG/AlgebraicEquationSet_Hubtrace_HDGAdvective.htest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_LamiBL_TurbWake_btest.cpp93c4abd9f5aae0228ad760d72eb5e830f7f8eafa1533737355000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduCleanup. Working on HDGAdvective hubtrace 2018-08-08 10:09:15 -040093c4abd9f5aae0228ad760d72eb5e830f7f8eafaCleanup. Working on HDGAdvective hubtraceedittest/system/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_NACA0004_LamiBL_btest.cppeditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective.hedittest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Line_IBL_airfoilOnly_btest.cppaddsrc/Discretization/HDG/AlgebraicEquationSet_Hubtrace_HDGAdvective.haddtest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_LamiBL_TurbWake_btest.cppeditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.heditsrc/pde/IBL/PDEIBL2D_impl.htest/unit/UnitGrids/CMakeLists.txt99aac0c2434e0d134893feaf33f64da7ec935e9f1533741331000https://acdl.mit.edu/csi/user/jzavalajzavalajzavala@mit.eduRenamed the duct mesher file mentioned inside CMakeLists.txt 2018-08-08 11:15:31 -040099aac0c2434e0d134893feaf33f64da7ec935e9fRenamed the duct mesher file mentioned inside CMakeLists.txtedittest/unit/UnitGrids/CMakeLists.txtsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective.hsrc/Discretization/HDG/AlgebraicEquationSet_Hubtrace_HDGAdvective.hsrc/Discretization/HDG/IntegrandBoundaryTrace_HubTrace_HDGAdvective.hsrc/Discretization/HDG/IntegrandBoundaryTrace_None_HDGAdvective.hsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.htest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_LamiBL_TurbWake_btest.cpp5efb5f67b256e96e03efd8aac7fc57b88689586c1533751701000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduGet coupled IBL to compile with HDGAdvective 2018-08-08 14:08:21 -04005efb5f67b256e96e03efd8aac7fc57b88689586cGet coupled IBL to compile with HDGAdvectiveeditsrc/Discretization/HDG/IntegrandBoundaryTrace_None_HDGAdvective.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_LamiBL_TurbWake_btest.cppeditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.heditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective.heditsrc/Discretization/HDG/AlgebraicEquationSet_Hubtrace_HDGAdvective.haddsrc/Discretization/HDG/IntegrandBoundaryTrace_HubTrace_HDGAdvective.htest/sandbox/Adapt2D_DGBR2_NavierStokes_FlatPlate_toy.cppa4b4035e957f0083756b88a62831528a9ab9a5941533753180000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduremoved the rfld dumping as it doesn't work in parallel 2018-08-08 14:33:00 -0400a4b4035e957f0083756b88a62831528a9ab9a594removed the rfld dumping as it doesn't work in paralleledittest/sandbox/Adapt2D_DGBR2_NavierStokes_FlatPlate_toy.cppsrc/pde/AnalyticFunction/ScalarFunction1D.htest/sandbox/Adapt1D_DGBR2_L2Project_toy.cpp2c6ac16b3fe0f0c6269a170457ffee500766c3601533753214000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educhanged monomial to accept reals, added a 1D L2Projection toy 2018-08-08 14:33:34 -04002c6ac16b3fe0f0c6269a170457ffee500766c360changed monomial to accept reals, added a 1D L2Projection toyeditsrc/pde/AnalyticFunction/ScalarFunction1D.haddtest/sandbox/Adapt1D_DGBR2_L2Project_toy.cppsrc/pde/AnalyticFunction/ScalarFunction1D.htest/sandbox/Adapt1D_DGBR2_L2Project_toy.cpptest/sandbox/Adapt2D_DGBR2_NavierStokes_FlatPlate_toy.cpp0d499d6ab77f4c2c8dbde579b51272b16ad4af0b1533753536000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educhanged monomial to accept reals, added a 1D L2Projection toy 2018-08-08 14:38:56 -04000d499d6ab77f4c2c8dbde579b51272b16ad4af0bchanged monomial to accept reals, added a 1D L2Projection toyedittest/sandbox/Adapt2D_DGBR2_NavierStokes_FlatPlate_toy.cppaddtest/sandbox/Adapt1D_DGBR2_L2Project_toy.cppeditsrc/pde/AnalyticFunction/ScalarFunction1D.htest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Advection_btest.cpptest/system/Asymptotic/ErrorOrder_1D_HDGAdvective_Advection_btest.cppsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.hc4c5d9a7c8f597ff01f09d31ce7ac0d4377df6441533756008000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduUpdated constructor signature 2018-08-08 15:20:08 -0400c4c5d9a7c8f597ff01f09d31ce7ac0d4377df644Updated constructor signatureedittest/system/Asymptotic/ErrorOrder_1D_HDGAdvective_Advection_btest.cppedittest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Advection_btest.cppeditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.htest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HDGAdvIBL_Panel_btest.cppe4b8047303c83f646dcb7e3b40eda241b46430281533757245000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded ping test for coupled HDGAdv IBL system. [TBD]: JacobianParam and hubtrace stuff 2018-08-08 15:40:45 -0400e4b8047303c83f646dcb7e3b40eda241b4643028Added ping test for coupled HDGAdv IBL system. [TBD]: JacobianParam and hubtrace stuffaddtest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HDGAdvIBL_Panel_btest.cpptest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_FlatPlate_toy.cpptest/sandbox/Adapt2D_DGBR2_NavierStokes_FlatPlate_toy.cpptest/sandbox/Adapt2D_DGBR2_NavierStokes_NACADuct_toy.cpptest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_OjedaMMS_toy.cpptest/sandbox/Solve2D_HDG_Triangle_NavierStokes_FlatPlate_toy.cpptest/sandbox/Adapt2D_HDG_NavierStokes_FlatPlate_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cpp402eaf0ff467fa034a6019cfcb2ed817d50e2c651533759042000https://acdl.mit.edu/csi/user/arthuangarthuangarthuang@mit.edusandbox edits 2018-08-08 16:10:42 -0400402eaf0ff467fa034a6019cfcb2ed817d50e2c65sandbox editsedittest/sandbox/Adapt2D_DGBR2_NavierStokes_FlatPlate_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cppedittest/sandbox/Solve2D_HDG_Triangle_NavierStokes_FlatPlate_toy.cppedittest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_OjedaMMS_toy.cppedittest/sandbox/Adapt2D_DGBR2_NavierStokes_NACADuct_toy.cppedittest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_FlatPlate_toy.cppedittest/sandbox/Adapt2D_HDG_NavierStokes_FlatPlate_toy.cpptest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_OjedaMMS_toy.cppef4ef161f771cc3fa2b0cc6afa0feae765240eb81533759346000https://acdl.mit.edu/csi/user/arthuangarthuangarthuang@mit.edurevert sandbox not working 2018-08-08 16:15:46 -0400ef4ef161f771cc3fa2b0cc6afa0feae765240eb8revert sandbox not workingedittest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_OjedaMMS_toy.cpptest/sandbox/Solve2D_DGAdvective_Triangle_Euler_SmoothBump_toy.cppee26a6f57cfb3ac0a7b7975afa21a70a7e0deb971533763937000https://acdl.mit.edu/csi/user/jzavalajzavalajzavala@mit.eduAdded Pseudo Time solving to DGAdvective Smoothbump toy. 2018-08-08 17:32:17 -0400ee26a6f57cfb3ac0a7b7975afa21a70a7e0deb97Added Pseudo Time solving to DGAdvective Smoothbump toy.edittest/sandbox/Solve2D_DGAdvective_Triangle_Euler_SmoothBump_toy.cpptest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_Xq.cpptest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_Xq.h47f3c433ad2b8b79cabd1527aabbba81db31b0511533764164000https://acdl.mit.edu/csi/user/jzavalajzavalajzavala@mit.eduCleaned up duct mesh generator files. 2018-08-08 17:36:04 -040047f3c433ad2b8b79cabd1527aabbba81db31b051Cleaned up duct mesh generator files.edittest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_Xq.cppedittest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_Xq.htest/unit/UnitGrids/XField2D_Arc_Triangle_Lagrange_Xq.cpptest/unit/UnitGrids/XField2D_Arc_Triangle_Lagrange_Xq.htest/unit/UnitGrids/CMakeLists.txttest/sandbox/arc_meshing_UROP_toy.cpp22426d53655cb5fc4d836c5f3c44cdcb97d3116b1533764291000https://acdl.mit.edu/csi/user/jzavalajzavalajzavala@mit.eduAdded arc mesh generator and corresponding toy test file. Updated CMakeLists accordingly. 2018-08-08 17:38:11 -040022426d53655cb5fc4d836c5f3c44cdcb97d3116bAdded arc mesh generator and corresponding toy test file. Updated CMakeLists accordingly.addtest/unit/UnitGrids/XField2D_Arc_Triangle_Lagrange_Xq.cppaddtest/unit/UnitGrids/XField2D_Arc_Triangle_Lagrange_Xq.haddtest/sandbox/arc_meshing_UROP_toy.cppedittest/unit/UnitGrids/CMakeLists.txtsrc/UserInterfaces/LIPSolver.hsrc/UserInterfaces/capsAIM/sansLIPAIM.cppsrc/UserInterfaces/LIPSolver.cppCMakeInclude/Checks/petsc_ksp_ex1_test.cxxd7a54d03e45bbeb84a30ba8ae5dd609aeef277801533776011000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduVarious fixes for LIP AIM 2018-08-08 20:53:31 -0400d7a54d03e45bbeb84a30ba8ae5dd609aeef27780Various fixes for LIP AIMeditsrc/UserInterfaces/capsAIM/sansLIPAIM.cppeditsrc/UserInterfaces/LIPSolver.heditsrc/UserInterfaces/LIPSolver.cppeditCMakeInclude/Checks/petsc_ksp_ex1_test.cxxtest/unit/CMakeLists.txtaa9c544f1d0bba1a00e483651dd1683a731f6ac01533810529000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduRelaxed unit test timing a bit more 2018-08-09 06:28:49 -0400aa9c544f1d0bba1a00e483651dd1683a731f6ac0Relaxed unit test timing a bit moreedittest/unit/CMakeLists.txttest/unit/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized_AD_btest.cpp73576e7812a4fdb74e53340038537c05ea24f9961533825630000https://acdl.mit.edu/csi/user/arthuangarthuangarthuang@mit.edurelax tol 2018-08-09 10:40:30 -040073576e7812a4fdb74e53340038537c05ea24f996relax toledittest/unit/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized_AD_btest.cpptest/unit/UnitGrids/XField2D_Arc_Triangle_Lagrange_Xq.htest/unit/UnitGrids/XField2D_Arc_Triangle_Lagrange_Xq.cpptest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_Xq.cpptest/sandbox/arc_meshing_UROP_toy.cpptest/unit/UnitGrids/CMakeLists.txttest/unit/UnitGrids/XField2D_Annulus_Triangle_Lagrange_Xq.cpptest/sandbox/Solve2D_DGAdvective_Triangle_Euler_SmoothBump_toy.cpptest/sandbox/annulus_meshing_UROP_toy.cpptest/unit/UnitGrids/XField2D_Annulus_Triangle_Lagrange_Xq.hdf696412d1bfd2ccfca5783af3564da8584f842a1533836427000https://acdl.mit.edu/csi/user/jzavalajzavalajzavala@mit.eduRenamed arc mesh generator files to annulus. Minor changes elsewhere. 2018-08-09 13:40:27 -0400df696412d1bfd2ccfca5783af3564da8584f842aRenamed arc mesh generator files to annulus. Minor changes elsewhere.edittest/unit/UnitGrids/CMakeLists.txtdeletetest/unit/UnitGrids/XField2D_Arc_Triangle_Lagrange_Xq.haddtest/unit/UnitGrids/XField2D_Annulus_Triangle_Lagrange_Xq.cppdeletetest/unit/UnitGrids/XField2D_Arc_Triangle_Lagrange_Xq.cppaddtest/unit/UnitGrids/XField2D_Annulus_Triangle_Lagrange_Xq.hedittest/sandbox/Solve2D_DGAdvective_Triangle_Euler_SmoothBump_toy.cppdeletetest/sandbox/arc_meshing_UROP_toy.cppaddtest/sandbox/annulus_meshing_UROP_toy.cppedittest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_Xq.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HDGAdvIBL_Panel_btest.cppsrc/Discretization/IntegrateBoundaryTrace_Dispatch.hsrc/Discretization/HDG/IntegrandBoundaryTrace_None_HDGAdvective.hsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.hsrc/Discretization/Galerkin/JacobianInteriorTrace_Galerkin_Param.hsrc/Discretization/HDG/JacobianInteriorTrace_HDGAdvective_Param.hsrc/Discretization/HDG/ResidualBoundaryTrace_Dispatch_HDGAdvective.hsrc/Discretization/HDG/ResidualInteriorTrace_HDGAdvective.hsrc/Discretization/HDG/JacobianInteriorTrace_HDGAdvective.hsrc/Discretization/HDG/AlgebraicEquationSet_Hubtrace_HDGAdvective.hsrc/Discretization/HDG/IntegrandBoundaryTrace_HubTrace_HDGAdvective.hsrc/Discretization/HDG/ResidualBoundaryTrace_HDGAdvective.hf84637eedb75a6ac1f28e0cb55306d6acb8759bf1533841849000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduHDGAdv progress: (1) jacobian w.r.t. parameter field now working for interior traces; (2) hubtrace jacobian and residual now working 2018-08-09 15:10:49 -0400f84637eedb75a6ac1f28e0cb55306d6acb8759bfHDGAdv progress: (1) jacobian w.r.t. parameter field now working for interior traces; (2) hubtrace jacobian and residual now workingeditsrc/Discretization/HDG/JacobianInteriorTrace_HDGAdvective.heditsrc/Discretization/HDG/AlgebraicEquationSet_Hubtrace_HDGAdvective.heditsrc/Discretization/HDG/IntegrandBoundaryTrace_HubTrace_HDGAdvective.haddsrc/Discretization/HDG/JacobianInteriorTrace_HDGAdvective_Param.heditsrc/Discretization/HDG/IntegrandBoundaryTrace_None_HDGAdvective.heditsrc/Discretization/HDG/ResidualBoundaryTrace_HDGAdvective.hedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HDGAdvIBL_Panel_btest.cppeditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.heditsrc/Discretization/Galerkin/JacobianInteriorTrace_Galerkin_Param.heditsrc/Discretization/HDG/ResidualBoundaryTrace_Dispatch_HDGAdvective.heditsrc/Discretization/IntegrateBoundaryTrace_Dispatch.heditsrc/Discretization/HDG/ResidualInteriorTrace_HDGAdvective.htest/unit/UnitGrids/XField2D_Annulus_Triangle_Lagrange_Xq.cppda23f71294ef702eaf79d0212b04c85e21edb87a1533843740000https://acdl.mit.edu/csi/user/jzavalajzavalajzavala@mit.eduMinor change. 2018-08-09 15:42:20 -0400da23f71294ef702eaf79d0212b04c85e21edb87aMinor change.edittest/unit/UnitGrids/XField2D_Annulus_Triangle_Lagrange_Xq.cppsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.hsrc/Discretization/HDG/JacobianBoundaryTrace_HDGAdvective_Param.hsrc/Discretization/HDG/JacobianInteriorTrace_HDGAdvective_Param.hsrc/Discretization/HDG/JacobianBoundaryTrace_Dispatch_HDGAdvective_Param.hsrc/Discretization/HDG/JacobianBoundaryTrace_FieldTrace_HDGAdvective_Param.hsrc/Discretization/HDG/JacobianBoundaryTrace_Dispatch_HDGAdvective.hsrc/Discretization/HDG/JacobianBoundaryTrace_FieldTrace_HDGAdvective.hdc9354f7f2a7cf5a47426405a948265d759c3bb01533847381000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduCompleted HDGAdv jacobian w.r.t. parameter fields at boundary traces 2018-08-09 16:43:01 -0400dc9354f7f2a7cf5a47426405a948265d759c3bb0Completed HDGAdv jacobian w.r.t. parameter fields at boundary traceseditsrc/Discretization/HDG/JacobianBoundaryTrace_Dispatch_HDGAdvective.heditsrc/Discretization/HDG/JacobianInteriorTrace_HDGAdvective_Param.heditsrc/Discretization/HDG/JacobianBoundaryTrace_FieldTrace_HDGAdvective.haddsrc/Discretization/HDG/JacobianBoundaryTrace_FieldTrace_HDGAdvective_Param.heditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.haddsrc/Discretization/HDG/JacobianBoundaryTrace_Dispatch_HDGAdvective_Param.haddsrc/Discretization/HDG/JacobianBoundaryTrace_HDGAdvective_Param.hsrc/Discretization/Galerkin/JacobianBoundaryTrace_FieldTrace_Galerkin_Param.hsrc/Discretization/HDG/AlgebraicEquationSet_Hubtrace_HDGAdvective.hf9c2de8a8047320e91eab8b3af7e0dcc4250fe831533848387000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduTurned on HDGAdv jacobian w.r.t. paramter field at HubTrace, and it just worked 2018-08-09 16:59:47 -0400f9c2de8a8047320e91eab8b3af7e0dcc4250fe83Turned on HDGAdv jacobian w.r.t. paramter field at HubTrace, and it just workededitsrc/Discretization/Galerkin/JacobianBoundaryTrace_FieldTrace_Galerkin_Param.heditsrc/Discretization/HDG/AlgebraicEquationSet_Hubtrace_HDGAdvective.htest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HDGAdvIBL_Panel_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_IBL_Panel_btest.cpp944ebec5cf55eaf4331b3638bf138a25982e0a611533849848000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduPing test fixed, but the resulting jacobian is too ill-conditioned such that linear solver fails. Original DG stuff also suffers the same problem. Probably broke sth in some previous commits --> To be fixed 2018-08-09 17:24:08 -0400944ebec5cf55eaf4331b3638bf138a25982e0a61Ping test fixed, but the resulting jacobian is too ill-conditioned such that linear solver fails. Original DG stuff also suffers the same problem. Probably broke sth in some previous commits --> To be fixededittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HDGAdvIBL_Panel_btest.cppedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_IBL_Panel_btest.cpptest/sandbox/Solve2D_DGAdvective_Triangle_Euler_SmoothBump_toy.cpptest/unit/UnitGrids/XField2D_Annulus_Triangle_Lagrange_Xq.cppa8597816454216902a56c8b40b97706aa62642e71533870995000https://acdl.mit.edu/csi/user/jzavalajzavalajzavala@mit.eduMinor fixes. 2018-08-09 23:16:35 -0400a8597816454216902a56c8b40b97706aa62642e7Minor fixes.edittest/sandbox/Solve2D_DGAdvective_Triangle_Euler_SmoothBump_toy.cppedittest/unit/UnitGrids/XField2D_Annulus_Triangle_Lagrange_Xq.cpptest/sandbox/Adapt1D_DGBR2_L2Project_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cpp518b84995060b7814a5f86be80c6aac3ea5d707a1533901072000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edubranch change 2018-08-10 07:37:52 -0400518b84995060b7814a5f86be80c6aac3ea5d707abranch changeedittest/sandbox/Adapt1D_DGBR2_L2Project_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cppsrc/Meshing/EGADS/EGModel.cppsrc/Meshing/EGADS/EGBody.cppsrc/Meshing/EGADS/EGBody.hsrc/Meshing/EGADS/EGTopologyBase.hsrc/UserInterfaces/capsAIM/intersectWake.cppsrc/Meshing/EGADS/EGIntersection.hsrc/Meshing/EGADS/EGTopologyBase.cppsrc/UserInterfaces/capsAIM/sansLIPAIM.cpp18318cc3df6516d8fcc9227cbc7bc429bd0d9ed31534096449000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduRemoved non-determinstic wake intersection 2018-08-12 13:54:09 -040018318cc3df6516d8fcc9227cbc7bc429bd0d9ed3Removed non-determinstic wake intersectioneditsrc/Meshing/EGADS/EGBody.heditsrc/Meshing/EGADS/EGTopologyBase.heditsrc/UserInterfaces/capsAIM/sansLIPAIM.cppeditsrc/Meshing/EGADS/EGBody.cppeditsrc/Meshing/EGADS/EGTopologyBase.cppeditsrc/UserInterfaces/capsAIM/intersectWake.cppeditsrc/Meshing/EGADS/EGIntersection.heditsrc/Meshing/EGADS/EGModel.cppsrc/Meshing/EGADS/EGBody.hsrc/Meshing/EGADS/EGBody.cpptest/unit/Meshing/EGADS/EGTessModel_btest.cppea52daa8b99551550bb73e241a9b9969c844d3a11534111370000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed compile errors 2018-08-12 18:02:50 -0400ea52daa8b99551550bb73e241a9b9969c844d3a1Fixed compile errorseditsrc/Meshing/EGADS/EGBody.heditsrc/Meshing/EGADS/EGBody.cppedittest/unit/Meshing/EGADS/EGTessModel_btest.cpptest/unit/Discretization/DG/AlgebraicEquationSet_DGAdvective_BuckleyLeverett_ST_btest.cpptest/unit/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_BuckleyLeverett_ST_btest.cpptest/unit/pde/FullPotential/LinearizedIncompressiblePotential3D_Trefftz_btest.cppCMakeInclude/Builds/BuildPETSC.cmaketest/unit/Discretization/DG/AlgebraicEquationSet_DGBR2_BuckleyLeverett_ST_btest.cpptest/unit/Discretization/HDG/AlgebraicEquationSet_HDG_BuckleyLeverett_ST_btest.cppe61bad2708ac75069f5b661cb5ccdf073a2cf11d1534112400000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAnother compile problem 2018-08-12 18:20:00 -0400e61bad2708ac75069f5b661cb5ccdf073a2cf11dAnother compile problemedittest/unit/Discretization/DG/AlgebraicEquationSet_DGBR2_BuckleyLeverett_ST_btest.cppedittest/unit/Discretization/DG/AlgebraicEquationSet_DGAdvective_BuckleyLeverett_ST_btest.cppeditCMakeInclude/Builds/BuildPETSC.cmakeedittest/unit/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_BuckleyLeverett_ST_btest.cppedittest/unit/Discretization/HDG/AlgebraicEquationSet_HDG_BuckleyLeverett_ST_btest.cppedittest/unit/pde/FullPotential/LinearizedIncompressiblePotential3D_Trefftz_btest.cpptest/unit/Discretization/DG/AlgebraicEquationSet_DGAdvective_BuckleyLeverett_ST_btest.cpptest/unit/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_BuckleyLeverett_ST_btest.cpptest/unit/Discretization/DG/AlgebraicEquationSet_DGBR2_BuckleyLeverett_ST_btest.cpptest/unit/Discretization/HDG/AlgebraicEquationSet_HDG_BuckleyLeverett_ST_btest.cppc9f16df1ce847aa2c7e0c43fcfa66ccf0d82d43d1534113265000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUndo 2018-08-12 18:34:25 -0400c9f16df1ce847aa2c7e0c43fcfa66ccf0d82d43dUndoedittest/unit/Discretization/DG/AlgebraicEquationSet_DGAdvective_BuckleyLeverett_ST_btest.cppedittest/unit/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_BuckleyLeverett_ST_btest.cppedittest/unit/Discretization/DG/AlgebraicEquationSet_DGBR2_BuckleyLeverett_ST_btest.cppedittest/unit/Discretization/HDG/AlgebraicEquationSet_HDG_BuckleyLeverett_ST_btest.cppsrc/Field/FieldLine_DG_Cell_impl.hsrc/Field/FieldVolume_DG_Cell_impl.hsrc/Field/Partition/XField_Lagrange.cppsrc/Field/Field_DG_CellBase.hsrc/Field/Field_DG_CellBase_impl.hsrc/Field/Partition/XField_Lagrange.htest/unit/Field/XField_Lagrange_Partition_btest.cppsrc/LinearAlgebra/GlobalContinuousMap.hsrc/Field/Partition/XField_Lagrange_balance_impl.hsrc/Field/FieldBase.hsrc/Field/FieldArea_DG_Cell_impl.htest/unit/Field/Field2D_DG_Triangle_btest.cpp697f39d1333ec3df53c16cb0264c672f7df4e9a51534124209000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduLots of work towards Zombies 2018-08-12 21:36:49 -0400697f39d1333ec3df53c16cb0264c672f7df4e9a5Lots of work towards Zombieseditsrc/Field/FieldBase.heditsrc/Field/Field_DG_CellBase_impl.heditsrc/Field/Partition/XField_Lagrange.heditsrc/Field/Partition/XField_Lagrange.cppeditsrc/Field/FieldLine_DG_Cell_impl.heditsrc/LinearAlgebra/GlobalContinuousMap.heditsrc/Field/FieldArea_DG_Cell_impl.heditsrc/Field/Field_DG_CellBase.heditsrc/Field/Partition/XField_Lagrange_balance_impl.hedittest/unit/Field/Field2D_DG_Triangle_btest.cppeditsrc/Field/FieldVolume_DG_Cell_impl.hedittest/unit/Field/XField_Lagrange_Partition_btest.cppsrc/UserInterfaces/capsAIM/intersectWake.cppsrc/Meshing/EGADS/replaceFaces.hc3a2f2cadf1b06cd29667dcd15bfbe2c3e0a2ac51534125167000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduForgot a file 2018-08-12 21:52:47 -0400c3a2f2cadf1b06cd29667dcd15bfbe2c3e0a2ac5Forgot a fileaddsrc/Meshing/EGADS/replaceFaces.heditsrc/UserInterfaces/capsAIM/intersectWake.cppsrc/Field/Field_DG_CellBase.h52b690fb0da3b01a0e818af98def3fedc6aedb781534125731000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed compile error 2018-08-12 22:02:11 -040052b690fb0da3b01a0e818af98def3fedc6aedb78Fixed compile erroreditsrc/Field/Field_DG_CellBase.hscripts/jenkins/cmake_jenkins.shsrc/UserInterfaces/capsAIM/sansLIPAIM.cppd381809db54f04c585ab63253a2cd10b9ed9f1e81534128423000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded sansLIPAIM to jenkins compile 2018-08-12 22:47:03 -0400d381809db54f04c585ab63253a2cd10b9ed9f1e8Added sansLIPAIM to jenkins compileeditscripts/jenkins/cmake_jenkins.sheditsrc/UserInterfaces/capsAIM/sansLIPAIM.cppsrc/Field/Field_DG_CellBase_impl.h8573ed4aed8bb05cf09dbc7d83eade0013083e411534163706000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduHopefully fixed local2native DG indexing 2018-08-13 08:35:06 -04008573ed4aed8bb05cf09dbc7d83eade0013083e41Hopefully fixed local2native DG indexingeditsrc/Field/Field_DG_CellBase_impl.htest/system/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_NACA0004_LamiBL_btest.cpptest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Line_IBL_airfoilOnly_btest.cppac5896099a7a21af13f13803f3044ce46eb39f111534169241000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduUpdated and verified existing test cases 2018-08-13 10:07:21 -0400ac5896099a7a21af13f13803f3044ce46eb39f11Updated and verified existing test casesedittest/system/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_NACA0004_LamiBL_btest.cppedittest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Line_IBL_airfoilOnly_btest.cppsrc/pde/IBL/PDEIBL2D_impl.htest/unit/Discretization/HDG/AlgebraicEquationSet_Hubtrace_HDGAdvective_IBL_btest.cpp0859e18ddec144d52c9dcd8f2d5eab2fe0636d681534181063000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded ping test for HDGAdvective HubTrace AES of uncoupled IBL 2018-08-13 13:24:23 -04000859e18ddec144d52c9dcd8f2d5eab2fe0636d68Added ping test for HDGAdvective HubTrace AES of uncoupled IBLeditsrc/pde/IBL/PDEIBL2D_impl.haddtest/unit/Discretization/HDG/AlgebraicEquationSet_Hubtrace_HDGAdvective_IBL_btest.cpptest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Line_IBL_airfoilOnly_btest.cpptest/unit/Discretization/DG/AlgebraicEquationSet_DGAdvective_Line_IBL_airfoilOnly_btest.cpptest/unit/Discretization/HDG/AlgebraicEquationSet_Hubtrace_HDGAdvective_IBL_btest.cpp0b6f9df70d136e89e22c2b5cab5cae550c2445591534182246000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded ping test 2018-08-13 13:44:06 -04000b6f9df70d136e89e22c2b5cab5cae550c244559Added ping testedittest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Line_IBL_airfoilOnly_btest.cppaddtest/unit/Discretization/DG/AlgebraicEquationSet_DGAdvective_Line_IBL_airfoilOnly_btest.cppedittest/unit/Discretization/HDG/AlgebraicEquationSet_Hubtrace_HDGAdvective_IBL_btest.cppsrc/Discretization/Galerkin/AlgebraicEquationSet_HubTrace_Galerkin_cutCellTransitionIBL.hsrc/Discretization/HDG/AlgebraicEquationSet_Hubtrace_HDGAdvective.hsrc/Discretization/Galerkin/AlgebraicEquationSet_HubTrace_Galerkin.ha03b5415432a458143f7f442425d6911602c1d151534182795000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduminor refactoring 2018-08-13 13:53:15 -0400a03b5415432a458143f7f442425d6911602c1d15minor refactoringeditsrc/Discretization/Galerkin/AlgebraicEquationSet_HubTrace_Galerkin.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_HubTrace_Galerkin_cutCellTransitionIBL.heditsrc/Discretization/HDG/AlgebraicEquationSet_Hubtrace_HDGAdvective.hsrc/Discretization/Galerkin/AlgebraicEquationSet_HubTrace_Galerkin_cutCellTransitionIBL.htest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBL_Panel_btest.cpp2953971b86ac5a7cacf6a366208937d7d942aa791534186068000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduminor refactoring 2018-08-13 14:47:48 -04002953971b86ac5a7cacf6a366208937d7d942aa79minor refactoringeditsrc/Discretization/Galerkin/AlgebraicEquationSet_HubTrace_Galerkin_cutCellTransitionIBL.hedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBL_Panel_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HDGAdvIBL_Panel_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_IBL_Panel_btest.cpp67905fab587df70335b0dee53ea462774a05f6211534187094000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduIntermediate commit: debugging coupled IBL 2018-08-13 15:04:54 -040067905fab587df70335b0dee53ea462774a05f621Intermediate commit: debugging coupled IBLedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HDGAdvIBL_Panel_btest.cppedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_IBL_Panel_btest.cpptest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_HDGAdv_IBL_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test.txttest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_LamiBL_TurbWake_btest.cpp8be658fa271b3bdab14f69070cd26af4ad65d36d1534193629000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduCoupled IBL with HDGAdv looks good qualitatively, compared to DG results from acdl/develop branch version. Ping test produces ill-conditioned jacoabian, which should be expected given the ill-conditioned amp equation (aka without proper initial condition at stagnation point) 2018-08-13 16:53:49 -04008be658fa271b3bdab14f69070cd26af4ad65d36dCoupled IBL with HDGAdv looks good qualitatively, compared to DG results from acdl/develop branch version. Ping test produces ill-conditioned jacoabian, which should be expected given the ill-conditioned amp equation (aka without proper initial condition at stagnation point)addtest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_HDGAdv_IBL_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test.txtedittest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_LamiBL_TurbWake_btest.cppsrc/Field/Field_DG_CellBase.hsrc/Field/Field_DG_CellBase_impl.hsrc/Field/CountGhostNeighbors.hsrc/Field/output_Tecplot.cppsrc/LinearAlgebra/GlobalContinuousMap.hsrc/Field/FieldBase.htest/unit/Field/Field2D_DG_Triangle_btest.cpp66f7dbef3fa5eaea26ae3c8a6b2c1029d4615f9b1534204666000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix for zombie counting 2018-08-13 19:57:46 -040066f7dbef3fa5eaea26ae3c8a6b2c1029d4615f9bFix for zombie countingeditsrc/Field/CountGhostNeighbors.heditsrc/Field/Field_DG_CellBase_impl.heditsrc/Field/output_Tecplot.cppedittest/unit/Field/Field2D_DG_Triangle_btest.cppeditsrc/Field/FieldBase.heditsrc/LinearAlgebra/GlobalContinuousMap.heditsrc/Field/Field_DG_CellBase.hsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_CutcellTransitionIBL.htest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HubtraceHDGAdvIBL_CutCellForcedTransition_Panel_btest.cppsrc/Discretization/HDG/AlgebraicEquationSet_Hubtrace_HDGAdvective.hsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.hsrc/Discretization/HDG/AlgebraicEquationSet_Hubtrace_HDGAdvective_CutcellTransitionIBL.h81ddd9a3fe63df28d31a8e9f1eb9e192278813d71534211641000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduImplemented HDGAdv cut-cell transition, and added ping test for forced transition 2018-08-13 21:54:01 -040081ddd9a3fe63df28d31a8e9f1eb9e192278813d7Implemented HDGAdv cut-cell transition, and added ping test for forced transitioneditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.haddtest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HubtraceHDGAdvIBL_CutCellForcedTransition_Panel_btest.cppaddsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_CutcellTransitionIBL.haddsrc/Discretization/HDG/AlgebraicEquationSet_Hubtrace_HDGAdvective_CutcellTransitionIBL.heditsrc/Discretization/HDG/AlgebraicEquationSet_Hubtrace_HDGAdvective.hsrc/pde/NS/BCEuler1D_mitState.htest/sandbox/Solve1D_DGBR2_Line_Euler_ShuOsher_AV_ST_toy.cppsrc/pde/NS/BCEulermitAVDiffusion1D.hf561c9f8934760dad91fd385a264b87a273710a11534218959000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduHigher-resolution ShuOsher case 2018-08-13 21:55:59 -0600f561c9f8934760dad91fd385a264b87a273710a1Higher-resolution ShuOsher caseeditsrc/pde/NS/BCEuler1D_mitState.heditsrc/pde/NS/BCEulermitAVDiffusion1D.hedittest/sandbox/Solve1D_DGBR2_Line_Euler_ShuOsher_AV_ST_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cpp11177852a9a6c3e4ff7756c48153d62937e94b491534253648000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduadded order and power runtime flags 2018-08-14 09:34:08 -040011177852a9a6c3e4ff7756c48153d62937e94b49added order and power runtime flagsedittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HubtraceHDGAdvIBL_CutCellNaturalTransition_Panel_btest.cpp1e0166385d45361aa4e37a50848adeddfeb34b8d1534255232000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded ping test for natural transition of HDGAdv cut-cell IBL 2018-08-14 10:00:32 -04001e0166385d45361aa4e37a50848adeddfeb34b8dAdded ping test for natural transition of HDGAdv cut-cell IBLaddtest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HubtraceHDGAdvIBL_CutCellNaturalTransition_Panel_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HubtraceHDGAdvIBL_CutCellNaturalTransition_Panel_btest.cppecc1a3907af14e365751ee90122f6bbafdcf76781534257340000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded HDGAdv cut-cell case with natural transition 2018-08-14 10:35:40 -0400ecc1a3907af14e365751ee90122f6bbafdcf7678Added HDGAdv cut-cell case with natural transitionedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HubtraceHDGAdvIBL_CutCellNaturalTransition_Panel_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppaddtest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppsrc/Discretization/Galerkin/Stabilization_Galerkin.htest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cppc39399ee3ab0618a579a8287992a5d7b96dbafec1534259166000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edutweaks to case and considering a different stabilization 2018-08-14 11:06:06 -0400c39399ee3ab0618a579a8287992a5d7b96dbafectweaks to case and considering a different stabilizationeditsrc/Discretization/Galerkin/Stabilization_Galerkin.hedittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cppsrc/pde/IBL/PDEIBL2D_impl.h99b1da46f6cd45ef5e7f3541d1da0817f8f16bbf1534266251000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed a bug in HDG interface equation of ctau 2018-08-14 13:04:11 -040099b1da46f6cd45ef5e7f3541d1da0817f8f16bbfFixed a bug in HDG interface equation of ctaueditsrc/pde/IBL/PDEIBL2D_impl.hsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_CutcellTransitionIBL.hsrc/Discretization/isValidState/isValidStateInteriorTrace_HDG.hd443e4df41859ea9842a36bbad92fb34368321021534270456000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduEnabled checking of state validity of interior trace DOFs of HDGAdv 2018-08-14 14:14:16 -0400d443e4df41859ea9842a36bbad92fb3436832102Enabled checking of state validity of interior trace DOFs of HDGAdveditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_CutcellTransitionIBL.heditsrc/Discretization/isValidState/isValidStateInteriorTrace_HDG.hsrc/pde/AnalyticFunction/ScalarFunction1D.htest/sandbox/Adapt1D_DGBR2_Line_Euler_GilesPierce_toy.cpp254e1d0925791e8c44b2c8acc083e45f41b5045d1534271713000https://acdl.mit.edu/csi/user/ursachiursachiursachi@mit.eduQ1D Adaptive Giles Pierce nozzle with p-sequencing 2018-08-14 14:35:13 -0400254e1d0925791e8c44b2c8acc083e45f41b5045dQ1D Adaptive Giles Pierce nozzle with p-sequencingeditsrc/pde/AnalyticFunction/ScalarFunction1D.haddtest/sandbox/Adapt1D_DGBR2_Line_Euler_GilesPierce_toy.cppsrc/pde/IBL/PDEIBL2D_impl.h999d4cdd3d6f75c3b1d2d5a35c32dab813a94bc71534272359000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed bugs in HDG-IBL interface fluxes and equations 2018-08-14 14:45:59 -0400999d4cdd3d6f75c3b1d2d5a35c32dab813a94bc7Fixed bugs in HDG-IBL interface fluxes and equationseditsrc/pde/IBL/PDEIBL2D_impl.hsrc/pde/NS/BCEuler2D_mitState.hsrc/pde/NS/BCEuler2D.hsrc/pde/NS/BCEulermitAVDiffusion2D.hsrc/pde/NS/BCEuler2D.cpptest/unit/pde/NS/BCEuler2D_btest.cppf3fff65a9f4ce86ab988db7a622fd133d3a7ef6e1534276399000https://acdl.mit.edu/csi/user/ursachiursachiursachi@mit.eduAdded supersonic outflow BC 2018-08-14 15:53:19 -0400f3fff65a9f4ce86ab988db7a622fd133d3a7ef6eAdded supersonic outflow BCeditsrc/pde/NS/BCEuler2D.heditsrc/pde/NS/BCEuler2D_mitState.hedittest/unit/pde/NS/BCEuler2D_btest.cppeditsrc/pde/NS/BCEulermitAVDiffusion2D.heditsrc/pde/NS/BCEuler2D.cpptest/sandbox/grids/GPNozzle0_X0.csftest/unit/UnitGrids/XField2D_GilesPierceNozzle_HACK.cpptest/unit/UnitGrids/CMakeLists.txttest/sandbox/Adapt2D_DGBR2_Euler_GilesPierce_AV_toy.cpptest/unit/UnitGrids/XField2D_GilesPierceNozzle_HACK_btest.cpptest/unit/UnitGrids/XField2D_GilesPierceNozzle_HACK.hdd4d83341c1eeae3b57e2e27b6decbebade8f9ee1534276516000https://acdl.mit.edu/csi/user/ursachiursachiursachi@mit.eduCreated grid and test case for adaptive 2D Giles Pierce nozzle 2018-08-14 15:55:16 -0400dd4d83341c1eeae3b57e2e27b6decbebade8f9eeCreated grid and test case for adaptive 2D Giles Pierce nozzleaddtest/sandbox/Adapt2D_DGBR2_Euler_GilesPierce_AV_toy.cppaddtest/sandbox/grids/GPNozzle0_X0.csfaddtest/unit/UnitGrids/XField2D_GilesPierceNozzle_HACK_btest.cppedittest/unit/UnitGrids/CMakeLists.txtaddtest/unit/UnitGrids/XField2D_GilesPierceNozzle_HACK.haddtest/unit/UnitGrids/XField2D_GilesPierceNozzle_HACK.cppsrc/pde/IBL/PDEIBL2D.hc8ceb7489fa755e06585df5f0b5bb2aaef8177f41534295385000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduswitched amp source, and transition front flux treatment 2018-08-14 21:09:45 -0400c8ceb7489fa755e06585df5f0b5bb2aaef8177f4switched amp source, and transition front flux treatmenteditsrc/pde/IBL/PDEIBL2D.hsrc/Discretization/HDG/IntegrandBoundaryTrace_None_HDGAdvective.hsrc/Discretization/HDG/IntegrandInteriorTrace_HDGAdvective.h15987db98eeb2dfd0a54831478a582fcdb267e441534301881000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduminor refactoring on HDGAdv integrands for IBL 2018-08-14 22:58:01 -040015987db98eeb2dfd0a54831478a582fcdb267e44minor refactoring on HDGAdv integrands for IBLeditsrc/Discretization/HDG/IntegrandBoundaryTrace_None_HDGAdvective.heditsrc/Discretization/HDG/IntegrandInteriorTrace_HDGAdvective.hsrc/pde/IBL/PDEIBL2D_impl.hsrc/pde/IBL/PDEIBL2D.h229a962e0030b249f5af7579c9d2f29bea091b001534303735000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduHacking with mitLG type of matching condition at element interfaces and transition front. Hacks are turned off in this commit 2018-08-14 23:28:55 -0400229a962e0030b249f5af7579c9d2f29bea091b00Hacking with mitLG type of matching condition at element interfaces and transition front. Hacks are turned off in this commiteditsrc/pde/IBL/PDEIBL2D.heditsrc/pde/IBL/PDEIBL2D_impl.htest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HubtraceHDGAdvIBL_CutCellNaturalTransition_Panel_btest.cppa9899ac3f7a13ca3c672fc306531df27a79151911534304026000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduminor refactoring 2018-08-14 23:33:46 -0400a9899ac3f7a13ca3c672fc306531df27a7915191minor refactoringedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HubtraceHDGAdvIBL_CutCellNaturalTransition_Panel_btest.cppsrc/Discretization/Galerkin/Stabilization_Galerkin.htest/sandbox/Adapt2D_DGBR2_NavierStokes_FlatPlate_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cpp91d2793539fff760d025701ee87a18156e4593231534427550000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduworking on a new tau and moving some stuff to dev 2018-08-16 09:52:30 -040091d2793539fff760d025701ee87a18156e459323working on a new tau and moving some stuff to deveditsrc/Discretization/Galerkin/Stabilization_Galerkin.hedittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppedittest/sandbox/Adapt2D_DGBR2_NavierStokes_FlatPlate_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpp81fbf18ffc8eb744754f00954ab5cfea7176844c1534429025000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduallowing command line spec 2018-08-16 10:17:05 -040081fbf18ffc8eb744754f00954ab5cfea7176844callowing command line specedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpp66f75faffe9ab1d4e334bd40027b2d2aee315fac1534440204000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduVMS seems to be adapting properlygit status! 2018-08-16 13:23:24 -040066f75faffe9ab1d4e334bd40027b2d2aee315facVMS seems to be adapting properlygit status!edittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cpp6b0a47619b1267a4d15386a1a12d1764d11b16161534440381000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educonflicts 2018-08-16 13:26:21 -04006b0a47619b1267a4d15386a1a12d1764d11b1616conflictsedittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cpp87f2853f21021fae4dba56153ca7b268ccaa0e391534440739000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edutypo 2018-08-16 13:32:19 -040087f2853f21021fae4dba56153ca7b268ccaa0e39typoedittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cppsrc/pde/NDConvert/PDENDConvertSpace2D.hsrc/Discretization/HDG/IntegrandInteriorTrace_HDGAdvective.hsrc/pde/IBL/PDEIBL2D.hsrc/pde/IBL/PDEIBL2D_impl.hfcdf78b6f6e77463395fe25a5125b65050d05ad81534443879000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduput HDG interface flux and matching equation (source) into one function 2018-08-16 14:24:39 -0400fcdf78b6f6e77463395fe25a5125b65050d05ad8put HDG interface flux and matching equation (source) into one functioneditsrc/pde/IBL/PDEIBL2D_impl.heditsrc/Discretization/HDG/IntegrandInteriorTrace_HDGAdvective.heditsrc/pde/IBL/PDEIBL2D.heditsrc/pde/NDConvert/PDENDConvertSpace2D.hsrc/pde/IBL/PDEIBL2D_impl.h997a0e2cdfd678789521ae0c23ecadc310973f2e1534444585000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed the interface flux and source for the other version of HDG-IBL as well 2018-08-16 14:36:25 -0400997a0e2cdfd678789521ae0c23ecadc310973f2eFixed the interface flux and source for the other version of HDG-IBL as welleditsrc/pde/IBL/PDEIBL2D_impl.hsrc/Discretization/Galerkin/Stabilization_Galerkin.hd822d5046a855f249e8a3e67448de599bd190c3d1534454846000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educhanging back to nDOF 2018-08-16 17:27:26 -0400d822d5046a855f249e8a3e67448de599bd190c3dchanging back to nDOFeditsrc/Discretization/Galerkin/Stabilization_Galerkin.htest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppsrc/Discretization/Galerkin/Stabilization_Galerkin.hd238911a1bc796ced0e6c78eac891ea830fbe2711534460153000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edutesting theory on linear basis for tau 2018-08-16 18:55:53 -0400d238911a1bc796ced0e6c78eac891ea830fbe271testing theory on linear basis for tauedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppeditsrc/Discretization/Galerkin/Stabilization_Galerkin.hsrc/Discretization/Galerkin/Stabilization_Galerkin.hc16a1b97ecdfba79cafb151578079282957c2a9e1534505854000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edureverting to develop 2018-08-17 07:37:34 -0400c16a1b97ecdfba79cafb151578079282957c2a9ereverting to developeditsrc/Discretization/Galerkin/Stabilization_Galerkin.hsrc/Adaptation/MOESS/NodalMetrics.cppsrc/Adaptation/MeshAdapter.hsrc/Adaptation/MOESS/NodalMetrics.hsrc/Adaptation/MeshAdapter.cpp780e9e4f0f8b6e2579c106459189174df29a217a1534541694000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edutool to guide mesh generator towards target metric from implied one (this build will certainly fail but i just want to get things in the repo 2018-08-17 17:34:54 -0400780e9e4f0f8b6e2579c106459189174df29a217atool to guide mesh generator towards target metric from implied one (this build will certainly fail but i just want to get things in the repoeditsrc/Adaptation/MOESS/NodalMetrics.cppeditsrc/Adaptation/MeshAdapter.heditsrc/Adaptation/MOESS/NodalMetrics.heditsrc/Adaptation/MeshAdapter.cppsrc/Discretization/Galerkin/Stabilization_Galerkin.hc7087ce03cb5ac2cadbb1057930bd0dc5a5f01511534773379000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educhanges to Experimental2, gives p order scaling stabilization now 2018-08-20 09:56:19 -0400c7087ce03cb5ac2cadbb1057930bd0dc5a5f0151changes to Experimental2, gives p order scaling stabilization noweditsrc/Discretization/Galerkin/Stabilization_Galerkin.hsrc/Discretization/Galerkin/Stabilization_Galerkin.h3f2ff9521a8cb148115c6d29e79e03f3a2ef05c11534773941000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educhanges to Experimental2, gives p order scaling stabilization now 2018-08-20 10:05:41 -04003f2ff9521a8cb148115c6d29e79e03f3a2ef05c1changes to Experimental2, gives p order scaling stabilization noweditsrc/Discretization/Galerkin/Stabilization_Galerkin.hsrc/pde/NS/BCEuler2D_mitState.htest/sandbox/Solve2D_DGBR2_Euler_ForwardStep_AV_ST_toy.cpp15ab1d0635ff236506f59d67f4b1e1f13d22e4d01534875355000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduChanges to help converge forward facing step 2018-08-21 14:15:55 -040015ab1d0635ff236506f59d67f4b1e1f13d22e4d0Changes to help converge forward facing stepedittest/sandbox/Solve2D_DGBR2_Euler_ForwardStep_AV_ST_toy.cppeditsrc/pde/NS/BCEuler2D_mitState.hsrc/Field/Field.hsrc/LinearAlgebra/SparseLinAlg/PETSc/MDFOrdering.hsrc/Discretization/Galerkin/JacobianInteriorTrace_Galerkin.hsrc/Discretization/Galerkin/JacobianCell_Galerkin_BDF.hsrc/Discretization/HDG/JacobianBoundaryTrace_FieldTrace_HDG.hsrc/Field/FieldBase.htest/system/LocalSolve/ElementLocalSolve2D_DGBR2_Triangle_AD_btest.cpptest/unit/Discretization/DG/ResidualBoundaryTrace_Dirichlet_mitState_DGBR2_AD_btest.cppsrc/MPI/serialize_DenseLinAlg_MatrixS.htest/unit/Discretization/DG/ResidualBoundaryTrace_LinearScalar_sansLG_DGBR2_AD_btest.cpptest/system/LocalSolve/LocalSolve3D_Split_DGBR2_Tet_AD_btest.cppsrc/Field/FieldVolume_DG_Cell_impl.htest/system/LocalSolve/CMakeLists.txtsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver.hsrc/pde/AdvectionDiffusion/ViscousFlux2D.htest/unit/Discretization/DG/JacobianBoundaryTrace_Dirichlet_mitState_DGBR2_TwoPhase_btest.cppsrc/Discretization/DG/AlgebraicEquationSet_DGBR2_impl.htest/system/LocalSolve/LocalSolve3D_DGAdvective_Tet_AD_btest.cppsrc/UserInterfaces/capsAIM/sansLIPAIM.cppsrc/Discretization/Galerkin/SolutionData_Galerkin_Stabilized.hsrc/Discretization/LIP_HACK/JacobianInteriorTrace_Galerkin_IPTF.hsrc/Field/FieldArea_DG_Cell_impl.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Project.htest/unit/Discretization/HDG/JacobianTest_HDG.hsrc/Discretization/DG/SolutionData_DGAdvective.hsrc/Discretization/DG/ResidualBoundaryTrace_DGBR2.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized.htest/system/LocalSolve/LocalSolve3D_DGBR2_Tet_AD_btest.cppsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.hsrc/Discretization/HDG/JacobianCell_HDG.hsrc/Discretization/HDG/JacobianBoundaryTrace_HDG.hsrc/Discretization/LIP_HACK/JacobianBoundaryTrace_sansLG_Galerkin_IPTF.hsrc/Field/FieldLine_DG_Cell_impl.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixS_Instantiate.cppsrc/Discretization/DG/JacobianInteriorTrace_DGBR2.hsrc/Field/Field_DG_CellBase_impl.hsrc/Adaptation/MOESS/SolverInterface_Galerkin.hsrc/Discretization/Galerkin/JacobianCell_Galerkin_HB.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin.hsrc/Field/Partition/XField_Lagrange_balance_impl.hsrc/Discretization/Galerkin/JacobianCell_Galerkin.hsrc/Field/FieldLine_Instantiate_2D.cppsrc/Discretization/Potential_Drela/JacobianCell_CG_Potential_Drela.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_factorize.hsrc/Discretization/Galerkin/JacobianBoundaryTrace_Dirichlet_mitLG_Galerkin.hsrc/Field/Partition/XField_Lagrange.cppscripts/jenkins/cmake_jenkins.shsrc/Field/FieldLine_DG_Cell.htest/system/LocalSolve/ElementLocalSolve3D_DGBR2_Tet_AD_btest.cppsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized_LiftedBoundary.hsrc/Discretization/DG/JacobianCell_DGBR2.hsrc/Adaptation/MOESS/SolverInterface_DGBR2.hsrc/Discretization/DG/JacobianBoundaryTrace_mitLG_DGBR2.hsrc/Field/FieldArea_Instantiate_2D.cppscripts/valgrind/OpenMPI.suppsrc/Discretization/Potential_Drela/AlgebraicEquationSet_CG_Potential_Drela.hsrc/Field/Field_DG_CellBase.hsrc/Field/Field_impl.hsrc/Discretization/Galerkin/JacobianBoundaryTrace_Galerkin.htest/unit/LinearAlgebra/SparseLinAlg/PETSc/PETSc_MDF_Ordering_btest.cppsrc/Discretization/DG/SolutionData_DGBR2_Block2.hsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective_impl.hsrc/Discretization/Galerkin/JacobianBoundaryTrace_mitLG_Galerkin.hsrc/Field/FieldArea_DG_Cell.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppsrc/Discretization/FV_TPFA/AlgebraicEquationSet_FV_TPFA.htest/unit/Field/XField_Lagrange_Partition_btest.cppsrc/Discretization/DG/AlgebraicEquationSet_TransitionIBL.hsrc/Discretization/Galerkin/ResidualBoundaryTrace_Galerkin.hsrc/MPI/serialize_SurrealS.hsrc/Discretization/DG/JacobianBoundaryTrace_DGBR2.hsrc/UserInterfaces/capsAIM/markWakeEdges.cpptest/system/LocalSolve/ElementLocalSolve3D_DGAdvective_Tet_AD_btest.cppsrc/Discretization/DG/SolutionData_DGBR2.htest/unit/Field/Field2D_DG_Triangle_btest.cppsrc/Field/FieldVolume_DG_Cell.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_impl.hsrc/Adaptation/MOESS/SolverInterface_DGAdvective.htest/system/LocalSolve/EdgeLocalSolve2D_Primal_DGBR2_Triangle_AD_btest.cppsrc/LinearAlgebra/SparseLinAlg/PETSc/MDFOrdering.cppsrc/UserInterfaces/capsAIM/intersectWake.cppsrc/Discretization/Potential_Drela/JacobianBoundaryTrace_CG_Potential_Drela.hsrc/Adaptation/MOESS/SolverInterface_DGBR2_Block2x2.htest/unit/Discretization/DG/Adjoint_LiftingOperator_DGBR2_Triangle_NS_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeIBL3eqmClosure_btest.cpp0986f7c3abfd7f46f80dff44dd524164da53731c1534887159000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduDG field now includes zombies 2018-08-21 17:32:39 -04000986f7c3abfd7f46f80dff44dd524164da53731cDG field now includes zombiesedittest/unit/Field/Field2D_DG_Triangle_btest.cppeditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_impl.heditscripts/jenkins/cmake_jenkins.sheditsrc/Discretization/Galerkin/JacobianCell_Galerkin_HB.heditsrc/UserInterfaces/capsAIM/sansLIPAIM.cppaddsrc/MPI/serialize_SurrealS.heditsrc/Adaptation/MOESS/SolverInterface_DGAdvective.heditsrc/Discretization/LIP_HACK/JacobianInteriorTrace_Galerkin_IPTF.hedittest/unit/Discretization/DG/Adjoint_LiftingOperator_DGBR2_Triangle_NS_btest.cppeditsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective_impl.heditsrc/UserInterfaces/capsAIM/intersectWake.cppeditsrc/Discretization/HDG/JacobianBoundaryTrace_FieldTrace_HDG.hedittest/unit/Discretization/DG/ResidualBoundaryTrace_LinearScalar_sansLG_DGBR2_AD_btest.cppeditsrc/Discretization/DG/SolutionData_DGAdvective.heditsrc/Field/FieldLine_Instantiate_2D.cppeditsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized_LiftedBoundary.heditsrc/Field/FieldVolume_DG_Cell.heditsrc/Discretization/Galerkin/JacobianBoundaryTrace_Galerkin.heditsrc/Discretization/HDG/JacobianBoundaryTrace_HDG.heditsrc/Field/FieldBase.heditsrc/Field/Field_DG_CellBase_impl.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Project.heditsrc/Field/FieldLine_DG_Cell_impl.heditsrc/UserInterfaces/capsAIM/markWakeEdges.cppeditsrc/Discretization/DG/AlgebraicEquationSet_DGBR2_impl.heditsrc/Field/Field_DG_CellBase.hedittest/system/LocalSolve/EdgeLocalSolve2D_Primal_DGBR2_Triangle_AD_btest.cppeditsrc/Discretization/Potential_Drela/JacobianBoundaryTrace_CG_Potential_Drela.heditsrc/Discretization/DG/ResidualBoundaryTrace_DGBR2.heditsrc/Discretization/DG/JacobianCell_DGBR2.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/MDFOrdering.heditsrc/Discretization/Galerkin/JacobianBoundaryTrace_mitLG_Galerkin.hedittest/unit/Field/XField_Lagrange_Partition_btest.cppeditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_factorize.heditsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.hedittest/unit/Discretization/DG/JacobianBoundaryTrace_Dirichlet_mitState_DGBR2_TwoPhase_btest.cppeditsrc/Discretization/Galerkin/JacobianInteriorTrace_Galerkin.heditsrc/Field/Partition/XField_Lagrange_balance_impl.haddtest/system/LocalSolve/ElementLocalSolve3D_DGAdvective_Tet_AD_btest.cppeditsrc/Discretization/Galerkin/SolutionData_Galerkin_Stabilized.heditsrc/Discretization/DG/SolutionData_DGBR2.heditsrc/Discretization/Galerkin/JacobianBoundaryTrace_Dirichlet_mitLG_Galerkin.hedittest/unit/Discretization/DG/ResidualBoundaryTrace_Dirichlet_mitState_DGBR2_AD_btest.cppeditsrc/Field/FieldLine_DG_Cell.hdeletetest/system/LocalSolve/LocalSolve3D_DGBR2_Tet_AD_btest.cppedittest/unit/LinearAlgebra/SparseLinAlg/PETSc/PETSc_MDF_Ordering_btest.cppedittest/system/LocalSolve/CMakeLists.txteditsrc/Discretization/DG/JacobianBoundaryTrace_DGBR2.heditsrc/Discretization/FV_TPFA/AlgebraicEquationSet_FV_TPFA.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeIBL3eqmClosure_btest.cppeditsrc/Field/FieldArea_DG_Cell_impl.heditsrc/Discretization/DG/JacobianInteriorTrace_DGBR2.heditsrc/Field/Partition/XField_Lagrange.cppeditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixS_Instantiate.cppeditsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized.heditsrc/Discretization/Potential_Drela/AlgebraicEquationSet_CG_Potential_Drela.heditsrc/Discretization/LIP_HACK/JacobianBoundaryTrace_sansLG_Galerkin_IPTF.heditsrc/Discretization/Galerkin/JacobianCell_Galerkin_BDF.heditsrc/Adaptation/MOESS/SolverInterface_Galerkin.heditscripts/valgrind/OpenMPI.suppeditsrc/Field/Field.hedittest/unit/Discretization/HDG/JacobianTest_HDG.heditsrc/Discretization/DG/SolutionData_DGBR2_Block2.heditsrc/Field/FieldArea_Instantiate_2D.cppeditsrc/Adaptation/MOESS/SolverInterface_DGBR2.heditsrc/Discretization/Galerkin/JacobianCell_Galerkin.heditsrc/Field/FieldArea_DG_Cell.hedittest/system/LocalSolve/ElementLocalSolve2D_DGBR2_Triangle_AD_btest.cppeditsrc/Field/Field_impl.hdeletetest/system/LocalSolve/LocalSolve3D_DGAdvective_Tet_AD_btest.cppaddtest/system/LocalSolve/ElementLocalSolve3D_DGBR2_Tet_AD_btest.cppdeletetest/system/LocalSolve/LocalSolve3D_Split_DGBR2_Tet_AD_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppeditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver.heditsrc/pde/AdvectionDiffusion/ViscousFlux2D.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/MDFOrdering.cppeditsrc/Discretization/HDG/JacobianCell_HDG.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin.heditsrc/Adaptation/MOESS/SolverInterface_DGBR2_Block2x2.heditsrc/Discretization/DG/JacobianBoundaryTrace_mitLG_DGBR2.heditsrc/Discretization/Galerkin/ResidualBoundaryTrace_Galerkin.heditsrc/Discretization/Potential_Drela/JacobianCell_CG_Potential_Drela.heditsrc/MPI/serialize_DenseLinAlg_MatrixS.heditsrc/Discretization/DG/AlgebraicEquationSet_TransitionIBL.heditsrc/Field/FieldVolume_DG_Cell_impl.hsrc/MPI/serialize_DenseLinAlg_MatrixS.hef8b07aff03769c60731abb57f814eaaa5632f021534891294000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMinor fix 2018-08-21 18:41:34 -0400ef8b07aff03769c60731abb57f814eaaa5632f02Minor fixeditsrc/MPI/serialize_DenseLinAlg_MatrixS.htest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cpp1cb033bb8ac157eb008b8473a444332327d772311534893722000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edutweaks 2018-08-21 19:22:02 -04001cb033bb8ac157eb008b8473a444332327d77231tweaksedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppedittest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cppsrc/Adaptation/MOESS/SolverInterface_Galerkin.htest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cpp11bf817f4e2d70814e857efb6fa62489d22fc9c51534894398000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edufix to SolverInterface, and changes to NSFlat Plate 2018-08-21 19:33:18 -040011bf817f4e2d70814e857efb6fa62489d22fc9c5fix to SolverInterface, and changes to NSFlat Plateedittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cppeditsrc/Adaptation/MOESS/SolverInterface_Galerkin.hsrc/Discretization/Galerkin/Stabilization_Galerkin.htest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cpp5ea6f50dd12b47e3d767e838beca1455c220644d1534894836000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduusing Exp not Exp2 as missing some instanations for LinAlg. 2018-08-21 19:40:36 -04005ea6f50dd12b47e3d767e838beca1455c220644dusing Exp not Exp2 as missing some instanations for LinAlg.editsrc/Discretization/Galerkin/Stabilization_Galerkin.hedittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cppsrc/Field/Field_impl.h0bd70aefbd9f880ea5613e3d9e58721d6abc0c211534901384000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded missing include 2018-08-21 21:29:44 -04000bd70aefbd9f880ea5613e3d9e58721d6abc0c21Added missing includeeditsrc/Field/Field_impl.htest/system/LocalSolve/LocalSolve2D_DGBR2_Triangle_AD_btest.cppaf10a15da7b9508c5db5d9e72eac1d5df759f0411534901506000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduNeed to remove LocalSolve2D_DGBR2_Triangle_AD_btest 2018-08-21 21:31:46 -0400af10a15da7b9508c5db5d9e72eac1d5df759f041Need to remove LocalSolve2D_DGBR2_Triangle_AD_btestedittest/system/LocalSolve/LocalSolve2D_DGBR2_Triangle_AD_btest.cpptest/system/LocalSolve/LocalSolve2D_Split_DGBR2_Triangle_AD_btest.cpptest/system/LocalSolve/LocalSolve2D_DGBR2_Triangle_AD_btest.cpptest/system/LocalSolve/ElementLocalSolve2D_DGBR2_Triangle_AD_btest.cppf259452a84635744b6e9c05a22823aedfe49c6ba1534909401000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduProper parallel DGBR2 LocalSolve 2018-08-21 23:43:21 -0400f259452a84635744b6e9c05a22823aedfe49c6baProper parallel DGBR2 LocalSolvedeletetest/system/LocalSolve/LocalSolve2D_Split_DGBR2_Triangle_AD_btest.cppdeletetest/system/LocalSolve/LocalSolve2D_DGBR2_Triangle_AD_btest.cppedittest/system/LocalSolve/ElementLocalSolve2D_DGBR2_Triangle_AD_btest.cpptest/system/LocalSolve/ElementLocalSolve3D_DGBR2_Tet_AD_btest.cpp0bdf3b7c3b3cf3386df83a934148539a3fdfe7fc1534936390000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduReduce runtime for ElementLocalSolve3D_DGBR2_Tet_AD_btest 2018-08-22 07:13:10 -04000bdf3b7c3b3cf3386df83a934148539a3fdfe7fcReduce runtime for ElementLocalSolve3D_DGBR2_Tet_AD_btestedittest/system/LocalSolve/ElementLocalSolve3D_DGBR2_Tet_AD_btest.cpptest/system/LocalSolve/ElementLocalSolve2D_DGBR2_Triangle_AD_btest.cpptest/system/LocalSolve/ElementLocalSolve3D_DGBR2_Tet_AD_btest.cpp3918b85d55977c2049c0086de12be45cd2e9393d1534937388000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduReduced number of partitions for ElementLocalSolve2D_DGBR2_Triangle_AD_btest 2018-08-22 07:29:48 -04003918b85d55977c2049c0086de12be45cd2e9393dReduced number of partitions for ElementLocalSolve2D_DGBR2_Triangle_AD_btestedittest/system/LocalSolve/ElementLocalSolve2D_DGBR2_Triangle_AD_btest.cppedittest/system/LocalSolve/ElementLocalSolve3D_DGBR2_Tet_AD_btest.cppsrc/Field/FieldBase_impl.hsrc/Discretization/Galerkin/JacobianCell_Galerkin_HB.hCMakeInclude/Finds/FindCAPS.cmakesrc/Field/FieldSequence.hsrc/Discretization/Galerkin/JacobianCell_Galerkin_BDF.htest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cpptest/unit/Field/Field2D_DG_Triangle_btest.cppcc35ea66bce6f6981e25121ba3375bdce966b5361534952860000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduVarious fixes 2018-08-22 11:47:40 -0400cc35ea66bce6f6981e25121ba3375bdce966b536Various fixeseditCMakeInclude/Finds/FindCAPS.cmakeedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppeditsrc/Discretization/Galerkin/JacobianCell_Galerkin_BDF.heditsrc/Field/FieldBase_impl.hedittest/unit/Field/Field2D_DG_Triangle_btest.cppeditsrc/Discretization/Galerkin/JacobianCell_Galerkin_HB.heditsrc/Field/FieldSequence.hsrc/Meshing/libMeshb/WriteSolution_libMeshb.cpptest/unit/Meshing/libMeshb/ReadSolution_libMeshb_btest.cppsrc/Meshing/libMeshb/ReadSolution_libMeshb.cppsrc/Field/Partition/XField_Lagrange.hsrc/Meshing/libMeshb/ReadSolution_libMeshb.hsrc/Meshing/libMeshb/CMakeLists.txttest/unit/Meshing/libMeshb/WriteSolution_libMeshb_btest.cppf3332362d56b84325ce3e5aff88d7bf6db1b20c01534963095000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded libMeshb solution reader 2018-08-22 14:38:15 -0400f3332362d56b84325ce3e5aff88d7bf6db1b20c0Added libMeshb solution readereditsrc/Meshing/libMeshb/WriteSolution_libMeshb.cppaddsrc/Meshing/libMeshb/ReadSolution_libMeshb.haddtest/unit/Meshing/libMeshb/ReadSolution_libMeshb_btest.cppeditsrc/Field/Partition/XField_Lagrange.haddsrc/Meshing/libMeshb/ReadSolution_libMeshb.cppeditsrc/Meshing/libMeshb/CMakeLists.txtedittest/unit/Meshing/libMeshb/WriteSolution_libMeshb_btest.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppsrc/Field/XField_impl.hsrc/Field/Field_impl.hsrc/Field/Field.hsrc/Adaptation/MeshAdapter.cppsrc/Field/Partition/XField_Lagrange.hsrc/Meshing/libMeshb/WriteMesh_libMeshb.cppsrc/Field/Partition/XField_Lagrange_balance_impl.hsrc/Meshing/refine/MesherInterface_refine.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppf5d4e7cb8e7138f8c3d67bd267d16f3b0e41ca701534994032000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduReworked multiscale metric so it mostly works 2018-08-22 23:13:52 -0400f5d4e7cb8e7138f8c3d67bd267d16f3b0e41ca70Reworked multiscale metric so it mostly workseditsrc/Adaptation/MeshAdapter.cppeditsrc/Field/Field.heditsrc/Field/XField_impl.hedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppeditsrc/Field/Partition/XField_Lagrange.heditsrc/Meshing/refine/MesherInterface_refine.cppeditsrc/Field/Partition/XField_Lagrange_balance_impl.heditsrc/Meshing/libMeshb/WriteMesh_libMeshb.cppeditsrc/Field/Field_impl.htest/unit/Meshing/libMeshb/ReadSolution_libMeshb_btest.cppsrc/Meshing/libMeshb/ReadSolution_libMeshb.cppsrc/Adaptation/MeshAdapter.cppc3f889ce5d94bdeb98f2ae3746adcbd7bbc5f3bb1535020644000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMinor fixes 2018-08-23 06:37:24 -0400c3f889ce5d94bdeb98f2ae3746adcbd7bbc5f3bbMinor fixeseditsrc/Adaptation/MeshAdapter.cppedittest/unit/Meshing/libMeshb/ReadSolution_libMeshb_btest.cppeditsrc/Meshing/libMeshb/ReadSolution_libMeshb.cppsrc/Adaptation/callMesher2D.cppsrc/Adaptation/callMesher.hsrc/Adaptation/MeshAdapter.cppsrc/Field/tools/for_each_BoundaryFieldTraceGroup_Cell.hsrc/Adaptation/callMesher3D.cppsrc/Adaptation/callMesher1D.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppsrc/Adaptation/CMakeLists.txt5cb822dcfa6849129aaae6a2ed5b91e0aa0fe4471535034133000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix link error. Zero out Mach number of walls for MultiScale metric. 2018-08-23 10:22:13 -04005cb822dcfa6849129aaae6a2ed5b91e0aa0fe447Fix link error. Zero out Mach number of walls for MultiScale metric.addsrc/Adaptation/callMesher2D.cppaddsrc/Adaptation/callMesher.hedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppeditsrc/Adaptation/MeshAdapter.cppeditsrc/Adaptation/CMakeLists.txtaddsrc/Adaptation/callMesher1D.cppeditsrc/Field/tools/for_each_BoundaryFieldTraceGroup_Cell.haddsrc/Adaptation/callMesher3D.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppf887916f4f1801b303c615d7cdf7f5e7f3d3d1fd1535053303000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduTweaks to DeltaWing MultiScale 2018-08-23 15:41:43 -0400f887916f4f1801b303c615d7cdf7f5e7f3d3d1fdTweaks to DeltaWing MultiScaleedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cpp0c96806ce3b00a2555d7cc23da8e3f3c02b24b831535053387000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduTypo 2018-08-23 15:43:07 -04000c96806ce3b00a2555d7cc23da8e3f3c02b24b83Typoedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppsrc/Discretization/DG/FunctionalBoundaryTrace_DGBR2.htest/unit/Discretization/DG/FunctionalBoundaryTrace_DGBR2_btest.cppff89f011cda23f2d74f05175f112b525b8847c451535060808000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed bug in FunctionalBoundaryTrace_DGBR2 related to new partitioning 2018-08-23 17:46:48 -0400ff89f011cda23f2d74f05175f112b525b8847c45Fixed bug in FunctionalBoundaryTrace_DGBR2 related to new partitioningedittest/unit/Discretization/DG/FunctionalBoundaryTrace_DGBR2_btest.cppeditsrc/Discretization/DG/FunctionalBoundaryTrace_DGBR2.htest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppsrc/Discretization/DG/SetFieldBoundaryTrace_DGBR2_AdjointLO.hsrc/ErrorEstimate/DG/ErrorEstimateBoundaryTrace_DGBR2.hsrc/Discretization/DG/SetFieldBoundaryTrace_DGBR2_LiftingOperator.hsrc/Discretization/DG/ResidualBoundaryTrace_FieldTrace_DGBR2.hsrc/Discretization/DG/JacobianBoundaryTrace_mitLG_DGBR2.htest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppeb3268dc7e0edf901b8e37557c09e7b396f2bd3b1535126683000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed some bugs related to new partitioning 2018-08-24 12:04:43 -0400eb3268dc7e0edf901b8e37557c09e7b396f2bd3bFixed some bugs related to new partitioningeditsrc/Discretization/DG/JacobianBoundaryTrace_mitLG_DGBR2.hedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppeditsrc/Discretization/DG/ResidualBoundaryTrace_FieldTrace_DGBR2.heditsrc/ErrorEstimate/DG/ErrorEstimateBoundaryTrace_DGBR2.hedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppeditsrc/Discretization/DG/SetFieldBoundaryTrace_DGBR2_LiftingOperator.heditsrc/Discretization/DG/SetFieldBoundaryTrace_DGBR2_AdjointLO.hsrc/Discretization/DG/SetFieldBoundaryTrace_DGBR2_AdjointLO.htest/unit/ErrorEstimate/ErrorEstimateBoundaryTrace_DGBR2_AD_btest.cpptest/unit/Discretization/DG/SetFieldBoundaryTrace_DGBR2_LO_AD_Dirichlet_mitState_btest.cppsrc/Discretization/DG/SetFieldBoundaryTrace_DGBR2_LiftingOperator.hsrc/ErrorEstimate/DG/ErrorEstimateBoundaryTrace_DGBR2.hdf5161c3d8a445f977425c3c778085ca560436631535127947000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduForgot some steps in the fixes 2018-08-24 12:25:47 -0400df5161c3d8a445f977425c3c778085ca56043663Forgot some steps in the fixeseditsrc/Discretization/DG/SetFieldBoundaryTrace_DGBR2_LiftingOperator.heditsrc/Discretization/DG/SetFieldBoundaryTrace_DGBR2_AdjointLO.heditsrc/ErrorEstimate/DG/ErrorEstimateBoundaryTrace_DGBR2.hedittest/unit/ErrorEstimate/ErrorEstimateBoundaryTrace_DGBR2_AD_btest.cppedittest/unit/Discretization/DG/SetFieldBoundaryTrace_DGBR2_LO_AD_Dirichlet_mitState_btest.cppsrc/UserInterfaces/capsAIM/sansLIPAIM.cpp571b1a6faf306e0bed13026bd0a08ce4a9713b111535146143000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduupdated sansLIPAIM with consistent function signatures 2018-08-24 17:29:03 -0400571b1a6faf306e0bed13026bd0a08ce4a9713b11updated sansLIPAIM with consistent function signatureseditsrc/UserInterfaces/capsAIM/sansLIPAIM.cppsrc/Field/FieldVolume_CG_InteriorTrace_impl.hsrc/Field/FieldVolume_CG_Trace_impl.htest/unit/Field/Field3D_CG_Tetrahedron_btest.cpptest/unit/Field/XField3D_Curved_Hex_btest.cppsrc/Field/FieldBase.htest/unit/Field/Field3D_CG_Hexahedron_btest.cppsrc/Field/FieldVolume_CG_Cell_impl.htest/unit/Field/XField3D_Curved_Tet_btest.cppsrc/Field/XFieldVolume_buildFrom_impl.hsrc/Field/FieldArea_CG_Cell_impl.hsrc/Field/Field_CG_Topology.hsrc/Field/FieldVolume_CG_BoundaryTrace_impl.hsrc/Field/Field_CG_Topology.cpp30182b797bab2c936efb9c017ad4b1b1a19b21831535171456000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduReworking CG DOF ordering 2018-08-25 00:30:56 -040030182b797bab2c936efb9c017ad4b1b1a19b2183Reworking CG DOF orderingeditsrc/Field/FieldVolume_CG_InteriorTrace_impl.heditsrc/Field/Field_CG_Topology.hedittest/unit/Field/Field3D_CG_Tetrahedron_btest.cppeditsrc/Field/FieldVolume_CG_BoundaryTrace_impl.heditsrc/Field/FieldArea_CG_Cell_impl.heditsrc/Field/FieldVolume_CG_Trace_impl.hedittest/unit/Field/XField3D_Curved_Hex_btest.cppedittest/unit/Field/XField3D_Curved_Tet_btest.cppedittest/unit/Field/Field3D_CG_Hexahedron_btest.cppeditsrc/Field/FieldBase.heditsrc/Field/FieldVolume_CG_Cell_impl.heditsrc/Field/Field_CG_Topology.cppeditsrc/Field/XFieldVolume_buildFrom_impl.hsrc/pde/NS/BCEuler2D_mitState.hsrc/pde/NS/BCEuler2D.hsrc/pde/NS/BCEulermitAVDiffusion2D.hsrc/pde/NS/PDEEulermitAVDiffusion2D.htest/sandbox/Solve2D_DGBR2_Euler_ForwardStep_AV_ST_toy.cpp3d9ae19b30b05d113281a47daadc6e901e6779491535284483000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduAdded spactime diffusion option for 2D Euler with artificial viscosity 2018-08-26 07:54:43 -04003d9ae19b30b05d113281a47daadc6e901e677949Added spactime diffusion option for 2D Euler with artificial viscosityeditsrc/pde/NS/BCEuler2D.heditsrc/pde/NS/BCEuler2D_mitState.hedittest/sandbox/Solve2D_DGBR2_Euler_ForwardStep_AV_ST_toy.cppeditsrc/pde/NS/PDEEulermitAVDiffusion2D.heditsrc/pde/NS/BCEulermitAVDiffusion2D.htest/sandbox/Solve2D_DGBR2_Triangle_Euler_RAE2822_ArtificialViscosity_Block_toy.cpptest/sandbox/Solve2D_DGBR2_HOW5_CI1_Block_toy.cpptest/sandbox/Solve2D_DGBR2_Triangle_Euler_Ramp_ArtificialViscosity_toy.cpptest/sandbox/Solve2D_DGBR2_Triangle_Euler_NACA0012_ArtificialViscosity_toy.cpptest/unit/pde/ArtificialViscosity/AVSensor_Source2D_Euler_btest.cpptest/unit/pde/NS/PDEEulermitAVDiffusion2D_btest.cpptest/unit/pde/ArtificialViscosity/PDEmitAVSensor2D_btest.cpptest/sandbox/Solve2D_DGBR2_HOW5_VI2_AV_toy.cpptest/unit/pde/ArtificialViscosity/AVSensor_ViscousFlux2D_btest.cpptest/sandbox/Solve2D_DGBR2_Triangle_Euler_RAE2822_ArtificialViscosity_toy.cpptest/sandbox/Solve2D_DGBR2_Triangle_Euler_Ramp_ArtificialViscosity_Block2x2_toy.cpptest/sandbox/Solve2D_DGBR2_Quad_Euler_ForwardFacingStep_AV_BDF_toy.cpptest/sandbox/Adapt2D_DGBR2_HOW5_CI1_toy.cpptest/unit/pde/NS/BCEulermitAVDiffusion2D_btest.cpptest/sandbox/Solve2D_DGBR2_HOW5_CI1_toy.cppf0e2581b0a8b43f5db8dbd91705d81b6514f6e291535287792000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduUpdated test for new PDEEuler2D with artificial viscosity interface 2018-08-26 08:49:52 -0400f0e2581b0a8b43f5db8dbd91705d81b6514f6e29Updated test for new PDEEuler2D with artificial viscosity interfaceedittest/sandbox/Solve2D_DGBR2_HOW5_VI2_AV_toy.cppedittest/sandbox/Solve2D_DGBR2_Triangle_Euler_RAE2822_ArtificialViscosity_toy.cppedittest/sandbox/Solve2D_DGBR2_Triangle_Euler_Ramp_ArtificialViscosity_Block2x2_toy.cppedittest/sandbox/Solve2D_DGBR2_Quad_Euler_ForwardFacingStep_AV_BDF_toy.cppedittest/sandbox/Solve2D_DGBR2_Triangle_Euler_NACA0012_ArtificialViscosity_toy.cppedittest/unit/pde/ArtificialViscosity/AVSensor_Source2D_Euler_btest.cppedittest/sandbox/Solve2D_DGBR2_HOW5_CI1_toy.cppedittest/unit/pde/NS/BCEulermitAVDiffusion2D_btest.cppedittest/sandbox/Adapt2D_DGBR2_HOW5_CI1_toy.cppedittest/sandbox/Solve2D_DGBR2_HOW5_CI1_Block_toy.cppedittest/unit/pde/ArtificialViscosity/PDEmitAVSensor2D_btest.cppedittest/sandbox/Solve2D_DGBR2_Triangle_Euler_RAE2822_ArtificialViscosity_Block_toy.cppedittest/sandbox/Solve2D_DGBR2_Triangle_Euler_Ramp_ArtificialViscosity_toy.cppedittest/unit/pde/ArtificialViscosity/AVSensor_ViscousFlux2D_btest.cppedittest/unit/pde/NS/PDEEulermitAVDiffusion2D_btest.cppsrc/Field/Element/UniqueElem.htest/unit/Field/XField2D_Local_Split_Part1_btest.cpptest/unit/Field/Field2D_CG_Triangle_btest.cppDeveloperEmailAddressestest/unit/Discretization/DG/FunctionalBoundaryTrace_DGBR2_btest.cppsrc/Field/Element/UniqueElem.cpptest/unit/Field/Field2D_EdgeLocal_PrimalNeighbors_CG_btest.cppsrc/Field/Field_CG_CellBase.hsrc/Field/CMakeLists.txttest/unit/IO/Field/Field2D_CG_Triangle_pattern.txtsrc/Meshing/EGTess/EGTessModel.cpptest/unit/Field/XField2D_Curved_btest.cppsrc/Field/FieldArea_CG_Cell_impl.hsrc/Meshing/EGTess/EGTessModel.hsrc/Field/Field_CG_Topology.htest/unit/Field/Field2D_EdgeLocal_Primal_CG_btest.cppsrc/Field/Field_CG_Topology.cppsrc/Field/XFieldArea_buildFrom_impl.h024e3a5a3e830753c39bc19f19ed7cdb68b56b281535340157000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdated 2D CG edge numbering 2018-08-26 23:22:37 -0400024e3a5a3e830753c39bc19f19ed7cdb68b56b28Updated 2D CG edge numberingeditsrc/Field/CMakeLists.txteditsrc/Field/Field_CG_Topology.cppedittest/unit/Field/Field2D_EdgeLocal_PrimalNeighbors_CG_btest.cppeditsrc/Field/FieldArea_CG_Cell_impl.hedittest/unit/IO/Field/Field2D_CG_Triangle_pattern.txtaddsrc/Field/Element/UniqueElem.heditsrc/Field/XFieldArea_buildFrom_impl.hedittest/unit/Field/XField2D_Local_Split_Part1_btest.cppeditDeveloperEmailAddresseseditsrc/Meshing/EGTess/EGTessModel.cppeditsrc/Field/Field_CG_CellBase.heditsrc/Meshing/EGTess/EGTessModel.hedittest/unit/Field/XField2D_Curved_btest.cppedittest/unit/Field/Field2D_CG_Triangle_btest.cppaddsrc/Field/Element/UniqueElem.cppeditsrc/Field/Field_CG_Topology.hedittest/unit/Discretization/DG/FunctionalBoundaryTrace_DGBR2_btest.cppedittest/unit/Field/Field2D_EdgeLocal_Primal_CG_btest.cppsrc/pde/NS/BCEulermitAVDiffusion2D.htest/sandbox/Solve2D_DGBR2_Quad_Euler_ForwardFacingStep_AV_BDF_toy.cpp8722e4163b6ecf680debf7fb4f605a3b06735d701535379392000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduAdded back working spacetime diffusion to euler in artificial viscosity 2018-08-27 10:16:32 -04008722e4163b6ecf680debf7fb4f605a3b06735d70Added back working spacetime diffusion to euler in artificial viscosityedittest/sandbox/Solve2D_DGBR2_Quad_Euler_ForwardFacingStep_AV_BDF_toy.cppeditsrc/pde/NS/BCEulermitAVDiffusion2D.htest/sandbox/Solve1D_DGBR2_Line_Euler_ArtNozzle_AV_BDF_toy.cpptest/unit/pde/ArtificialViscosity/AVSensor_ViscousFlux1D_btest.cppsrc/pde/NS/BCEulermitAVDiffusion1D.htest/sandbox/Adapt2D_DGBR2_Euler_ArtificialViscosity_ST_toy.cpptest/system/CodeConsistency/PDEmitAVSensor1D_Consistency_btest.cppsrc/pde/NS/PDEEulermitAVDiffusion1D.htest/sandbox/Solve1D_DGBR2_Line_Euler_ArtNozzle_AV_ST_toy.cpptest/sandbox/Solve1D_DGBR2_Line_Euler_ArtNozzle_AV_Steady_toy.cpptest/sandbox/Adapt1D_DGBR2_Line_Euler_SSMENozzle_toy.cpptest/sandbox/Solve1D_DGBR2_Line_Euler_Sod_AV_ST_toy.cpptest/sandbox/Solve1D_DGBR2_Line_Euler_Nozzle_ArtificialViscosity_toy.cpptest/sandbox/Solve2D_DGBR2_Quad_Euler_ForwardFacingStep_AV_BDF_toy.cpptest/unit/pde/ArtificialViscosity/PDEmitAVSensor1D_btest.cpptest/unit/Discretization/DG/JacobianCell_DGBR2_Param_Euler1D_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block2x2_DGBR2_Line_Euler1DSensor_btest.cpptest/sandbox/Solve1D_DGBR2_Line_Euler_ShuOsher_AV_ST_toy.cpptest/system/CodeConsistency/PDEEulermitAVDiffusion1D_Consistency_btest.cppsrc/pde/NS/PDEEulermitAVDiffusion2D.htest/unit/pde/NS/BCEulermitAVDiffusion1D_btest.cpptest/sandbox/Solve1D_DGBR2_Line_Euler_Lax_AV_ST_toy.cpptest/unit/Discretization/DG/JacobianInteriorTrace_DGBR2_Param_Euler1D_btest.cppsrc/pde/NS/PDEEuler1D_Source.htest/unit/pde/ArtificialViscosity/AVSensor_Source1D_Euler_btest.cpptest/sandbox/Adapt2D_DGBR2_Euler_ArtNozzle_AV_ST_toy.cpptest/unit/pde/NS/PDEEulermitAVDiffusion1D_btest.cppd3dd70099ed8a52507a54a410db6a968c82b3d8d1535389257000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduUpdated 1D euler with optional spacetime diffusion 2018-08-27 13:00:57 -0400d3dd70099ed8a52507a54a410db6a968c82b3d8dUpdated 1D euler with optional spacetime diffusionedittest/sandbox/Solve2D_DGBR2_Quad_Euler_ForwardFacingStep_AV_BDF_toy.cppeditsrc/pde/NS/PDEEuler1D_Source.hedittest/sandbox/Solve1D_DGBR2_Line_Euler_Sod_AV_ST_toy.cppedittest/sandbox/Solve1D_DGBR2_Line_Euler_ArtNozzle_AV_Steady_toy.cppedittest/sandbox/Solve1D_DGBR2_Line_Euler_Nozzle_ArtificialViscosity_toy.cppedittest/unit/pde/NS/BCEulermitAVDiffusion1D_btest.cppeditsrc/pde/NS/PDEEulermitAVDiffusion2D.hedittest/unit/pde/NS/PDEEulermitAVDiffusion1D_btest.cppedittest/unit/Discretization/DG/JacobianCell_DGBR2_Param_Euler1D_btest.cppedittest/unit/pde/ArtificialViscosity/AVSensor_Source1D_Euler_btest.cppedittest/sandbox/Solve1D_DGBR2_Line_Euler_ArtNozzle_AV_BDF_toy.cppedittest/system/CodeConsistency/PDEmitAVSensor1D_Consistency_btest.cppedittest/sandbox/Solve1D_DGBR2_Line_Euler_Lax_AV_ST_toy.cppedittest/unit/pde/ArtificialViscosity/PDEmitAVSensor1D_btest.cppedittest/unit/pde/ArtificialViscosity/AVSensor_ViscousFlux1D_btest.cppedittest/unit/Discretization/DG/JacobianInteriorTrace_DGBR2_Param_Euler1D_btest.cppedittest/sandbox/Adapt1D_DGBR2_Line_Euler_SSMENozzle_toy.cppedittest/unit/Discretization/Block/AlgebraicEquationSet_Block2x2_DGBR2_Line_Euler1DSensor_btest.cppeditsrc/pde/NS/BCEulermitAVDiffusion1D.hedittest/sandbox/Adapt2D_DGBR2_Euler_ArtificialViscosity_ST_toy.cppedittest/sandbox/Adapt2D_DGBR2_Euler_ArtNozzle_AV_ST_toy.cppedittest/system/CodeConsistency/PDEEulermitAVDiffusion1D_Consistency_btest.cppeditsrc/pde/NS/PDEEulermitAVDiffusion1D.hedittest/sandbox/Solve1D_DGBR2_Line_Euler_ShuOsher_AV_ST_toy.cppedittest/sandbox/Solve1D_DGBR2_Line_Euler_ArtNozzle_AV_ST_toy.cppsrc/ErrorEstimate/DG/ErrorEstimate_DGAdvective.hc414ccf7fbf6c271de155ac21ef8b3b2217f15b91535392222000https://acdl.mit.edu/csi/user/ursachiursachiursachi@mit.eduChanged Galerkin tag to DGAdv 2018-08-27 13:50:22 -0400c414ccf7fbf6c271de155ac21ef8b3b2217f15b9Changed Galerkin tag to DGAdveditsrc/ErrorEstimate/DG/ErrorEstimate_DGAdvective.hsrc/pde/NS/PDEEulermitAVDiffusion2D.hsrc/pde/NS/PDEEulermitAVDiffusion1D.h15fe24d755de824e97b5b7dab342587db43602dc1535394785000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduAdded asserts to stop bad parameters using for spacetime 2018-08-27 14:33:05 -040015fe24d755de824e97b5b7dab342587db43602dcAdded asserts to stop bad parameters using for spacetimeeditsrc/pde/NS/PDEEulermitAVDiffusion2D.heditsrc/pde/NS/PDEEulermitAVDiffusion1D.hsrc/pde/NS/BCEuler2D_mitState.htest/unit/pde/ArtificialViscosity/AVSensor_ViscousFlux1D_btest.cppsrc/pde/NS/SolutionFunction_Euler2D.htest/unit/pde/NS/BCEuler2D_btest.cppe2a9d9da70adebd55c2164f15072c4927d4435e81535399783000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduFormatting errors 2018-08-27 15:56:23 -0400e2a9d9da70adebd55c2164f15072c4927d4435e8Formatting errorseditsrc/pde/NS/SolutionFunction_Euler2D.hedittest/unit/pde/ArtificialViscosity/AVSensor_ViscousFlux1D_btest.cppeditsrc/pde/NS/BCEuler2D_mitState.hedittest/unit/pde/NS/BCEuler2D_btest.cppsrc/Field/FieldVolume_CG_InteriorTrace_impl.hsrc/Field/Field_CG_CellConstructor.hsrc/Field/Element/UniqueElem.hsrc/Field/Field_CG_CellConstructor.cppsrc/Field/XField.hsrc/Field/FieldArea_CG_BoundaryTrace_impl.hsrc/Field/FieldArea_CG_InteriorTrace_impl.hsrc/Field/FieldVolume_CG_Trace_impl.hsrc/Field/FieldArea_CG_Trace_impl.hsrc/Field/FieldVolume_CG_Cell_impl.hsrc/Field/FieldLine_CG_Cell_impl.hsrc/Field/Field_CG_TraceBase.hsrc/Field/Element/UniqueElem.cppsrc/Field/Field_CG_CellBase.hsrc/Field/XFieldVolume_buildFrom_impl.hsrc/Field/FieldArea_CG_Cell_impl.hsrc/Field/Field_CG_Topology.hsrc/Field/FieldVolume_CG_BoundaryTrace_impl.hsrc/Field/XFieldArea_buildFrom_impl.hsrc/Field/Field_CG_Topology.cpp468818ffae2801cb5939a4a6100a2216697450c41535413954000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduCompletely reworking CG field constructions 2018-08-27 19:52:34 -0400468818ffae2801cb5939a4a6100a2216697450c4Completely reworking CG field constructionseditsrc/Field/FieldArea_CG_BoundaryTrace_impl.heditsrc/Field/XFieldVolume_buildFrom_impl.heditsrc/Field/FieldArea_CG_InteriorTrace_impl.heditsrc/Field/XFieldArea_buildFrom_impl.heditsrc/Field/FieldVolume_CG_Trace_impl.heditsrc/Field/FieldVolume_CG_Cell_impl.heditsrc/Field/Field_CG_Topology.heditsrc/Field/Field_CG_CellBase.heditsrc/Field/XField.heditsrc/Field/FieldArea_CG_Cell_impl.heditsrc/Field/FieldLine_CG_Cell_impl.heditsrc/Field/FieldVolume_CG_InteriorTrace_impl.haddsrc/Field/Field_CG_CellConstructor.heditsrc/Field/Field_CG_TraceBase.heditsrc/Field/Element/UniqueElem.heditsrc/Field/Field_CG_Topology.cppeditsrc/Field/Element/UniqueElem.cppeditsrc/Field/FieldArea_CG_Trace_impl.heditsrc/Field/FieldVolume_CG_BoundaryTrace_impl.haddsrc/Field/Field_CG_CellConstructor.cppsrc/Field/FieldVolume_CG_InteriorTrace_impl.hsrc/Field/Field_CG_CellConstructor.cppsrc/Field/Field_CG_CellConstructor.hsrc/Field/FieldArea_CG_BoundaryTrace_impl.hsrc/Field/FieldArea_CG_InteriorTrace_impl.hsrc/Field/Field_CG_TraceBase.hxxsrc/Field/FieldVolume_CG_Trace_impl.hsrc/Field/FieldArea_CG_Trace_impl.hsrc/Field/FieldVolume_CG_Cell_impl.hsrc/Field/Field_CG_CellBase.hxxsrc/Field/Field_CG_TraceBase.hsrc/Field/Field_CG_CellBase.hsrc/Field/CMakeLists.txtsrc/Field/XFieldVolume_buildFrom_impl.hsrc/Field/FieldArea_CG_Cell_impl.hsrc/Field/FieldVolume_CG_BoundaryTrace_impl.hsrc/Field/Field_CG_Topology.hsrc/Field/Field_CG_Topology.cppsrc/Field/XFieldArea_buildFrom_impl.h4f5d795fe683d89d09dfd0e05658611716481d961535427717000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMore work on new CG Field creation 2018-08-27 23:41:57 -04004f5d795fe683d89d09dfd0e05658611716481d96More work on new CG Field creationeditsrc/Field/CMakeLists.txteditsrc/Field/FieldArea_CG_InteriorTrace_impl.hdeletesrc/Field/Field_CG_TraceBase.heditsrc/Field/FieldArea_CG_Cell_impl.heditsrc/Field/Field_CG_CellConstructor.cppeditsrc/Field/FieldVolume_CG_BoundaryTrace_impl.heditsrc/Field/Field_CG_Topology.cppaddsrc/Field/Field_CG_TraceBase.hxxeditsrc/Field/FieldVolume_CG_Trace_impl.haddsrc/Field/Field_CG_CellBase.hxxeditsrc/Field/XFieldArea_buildFrom_impl.heditsrc/Field/FieldVolume_CG_InteriorTrace_impl.heditsrc/Field/Field_CG_Topology.heditsrc/Field/XFieldVolume_buildFrom_impl.heditsrc/Field/FieldArea_CG_BoundaryTrace_impl.heditsrc/Field/FieldArea_CG_Trace_impl.hdeletesrc/Field/Field_CG_CellBase.heditsrc/Field/Field_CG_CellConstructor.heditsrc/Field/FieldVolume_CG_Cell_impl.hsrc/pde/NS/BCEuler2D.ha918f50ffbc399a07469e94eb97c62685866795e1535471929000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduHopefully fixed intel error by extending boost::mpl::vector 2018-08-28 11:58:49 -0400a918f50ffbc399a07469e94eb97c62685866795eHopefully fixed intel error by extending boost::mpl::vectoreditsrc/pde/NS/BCEuler2D.hsrc/pde/IBL/PDEIBL2D_impl.hdf0770d16c0c58a1cb8368255cfc929d56ec32df1535491510000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduTried continuous nt but other variables discontinuous. Not quite fruitful yet. Might re-examine this in the future 2018-08-28 17:25:10 -0400df0770d16c0c58a1cb8368255cfc929d56ec32dfTried continuous nt but other variables discontinuous. Not quite fruitful yet. Might re-examine this in the futureeditsrc/pde/IBL/PDEIBL2D_impl.hsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_CutcellTransitionIBL.h697bb93e1b5531f9d0c687d8b1b544abbf7dea681535491572000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduDo not check HDG trace variable validity when those variables are Lagrange multipliers instead of primary IBL unknowns 2018-08-28 17:26:12 -0400697bb93e1b5531f9d0c687d8b1b544abbf7dea68Do not check HDG trace variable validity when those variables are Lagrange multipliers instead of primary IBL unknownseditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_CutcellTransitionIBL.hsrc/pde/IBL/PDEIBL2D.hsrc/pde/IBL/PDEIBL2D_impl.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBLnaturalTransition_ntcrit0p6500_turbulentWakexfoillag_naca0004_ne64_p1_Test_DGmatchHDG.txttest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBLnaturalTransition_ntcrit0p6500_turbulentWakexfoillag_naca0004_ne64_p1_Test_HDGcontinuous.txt5a9ad409c2c43126a264d274ea7973ab8233f2451535506893000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduCleaned up and only maintained two versions of cut-cell IBL: 1. HDG and DG whose solution are represented with DG fields; 2. HDG hacked so that all unknowns are continous across elements (essentially CG solution) 2018-08-28 21:41:33 -04005a9ad409c2c43126a264d274ea7973ab8233f245Cleaned up and only maintained two versions of cut-cell IBL: 1. HDG and DG whose solution are represented with DG fields; 2. HDG hacked so that all unknowns are continous across elements (essentially CG solution)editsrc/pde/IBL/PDEIBL2D_impl.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppeditsrc/pde/IBL/PDEIBL2D.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppaddtest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBLnaturalTransition_ntcrit0p6500_turbulentWakexfoillag_naca0004_ne64_p1_Test_HDGcontinuous.txtaddtest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBLnaturalTransition_ntcrit0p6500_turbulentWakexfoillag_naca0004_ne64_p1_Test_DGmatchHDG.txttest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_p0_btest.cppb126d27aa9d510699114386b5874b99a228f3a571535506945000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduCommitted a p0 HDG test case. (This is not expected to work for HDG that is hacked to be CG) 2018-08-28 21:42:25 -0400b126d27aa9d510699114386b5874b99a228f3a57Committed a p0 HDG test case. (This is not expected to work for HDG that is hacked to be CG)addtest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_p0_btest.cpptest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBLnaturalTransition_ntcrit0p6500_turbulentWakexfoillag_naca0004_ne64_p1_Test_DGmatchHDG.txtbc21d13c7143a5ffde1f51a527f20daf6df9b8df1535510094000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduThe pyrite file in the last commit seems to be corrupted.. now updated 2018-08-28 22:34:54 -0400bc21d13c7143a5ffde1f51a527f20daf6df9b8dfThe pyrite file in the last commit seems to be corrupted.. now updatededittest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBLnaturalTransition_ntcrit0p6500_turbulentWakexfoillag_naca0004_ne64_p1_Test_DGmatchHDG.txtsrc/pde/NS/BCEulermitAVDiffusion2D.htest/unit/pde/NS/BCNavierStokes2D_btest.cppsrc/pde/NS/TraitsNavierStokesArtificialViscosity.htest/unit/IO/pde/NS/BCNavierStokes2D_pattern.txtsrc/pde/NS/BCNavierStokes2D.hsrc/pde/NS/PDEEulermitAVDiffusion2D.hsrc/pde/NS/OutputNavierStokes2D.htest/unit/pde/NS/OutputNavierStokes2D_btest.cppsrc/pde/NS/BCNavierStokes2D.cppc7364e12515c6c6b56eac9e28c04e7298fed42001535547547000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduNavierStokes2D with artificial viscosity 2018-08-29 08:59:07 -0400c7364e12515c6c6b56eac9e28c04e7298fed4200NavierStokes2D with artificial viscosityeditsrc/pde/NS/BCNavierStokes2D.hedittest/unit/pde/NS/BCNavierStokes2D_btest.cppeditsrc/pde/NS/PDEEulermitAVDiffusion2D.hedittest/unit/IO/pde/NS/BCNavierStokes2D_pattern.txtaddsrc/pde/NS/TraitsNavierStokesArtificialViscosity.heditsrc/pde/NS/BCEulermitAVDiffusion2D.heditsrc/pde/NS/BCNavierStokes2D.cppaddsrc/pde/NS/OutputNavierStokes2D.haddtest/unit/pde/NS/OutputNavierStokes2D_btest.cppsrc/pde/NS/OutputNavierStokes2D.h4f506e572739446da8f1fce9d465a3f33cd8e68c1535547934000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduFormatting issues 2018-08-29 09:05:34 -04004f506e572739446da8f1fce9d465a3f33cd8e68cFormatting issueseditsrc/pde/NS/OutputNavierStokes2D.hsrc/pde/NS/CMakeLists.txtsrc/pde/NS/GasModel.hsrc/pde/NS/NavierStokesArtificialViscosity2D.cppsrc/pde/NS/PDEEulermitAVDiffusion2D.hsrc/pde/NS/BCNavierStokes2D.hsrc/pde/NS/BCEulermitAVDiffusion2D.cppsrc/pde/NS/BCNavierStokes2D.cppb9eaabe7fcad001120708d33815191064833dd811535558077000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduMissed a few files 2018-08-29 11:54:37 -0400b9eaabe7fcad001120708d33815191064833dd81Missed a few fileseditsrc/pde/NS/BCEulermitAVDiffusion2D.cppaddsrc/pde/NS/NavierStokesArtificialViscosity2D.cppeditsrc/pde/NS/CMakeLists.txteditsrc/pde/NS/BCNavierStokes2D.cppeditsrc/pde/NS/GasModel.heditsrc/pde/NS/PDEEulermitAVDiffusion2D.heditsrc/pde/NS/BCNavierStokes2D.hsrc/pde/NS/BCEulermitAVDiffusion2D.cpp85f733742dc1ad504e059b9cd20a092ff861dadf1535559184000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduFormatting fix 2018-08-29 12:13:04 -040085f733742dc1ad504e059b9cd20a092ff861dadfFormatting fixeditsrc/pde/NS/BCEulermitAVDiffusion2D.cppsrc/pde/NS/BCEulermitAVDiffusion2D.cppe6ebbc5f349fe1b474b3e4f9529a899d5a90e7e11535559940000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduFormatting fix 2018-08-29 12:25:40 -0400e6ebbc5f349fe1b474b3e4f9529a899d5a90e7e1Formatting fixeditsrc/pde/NS/BCEulermitAVDiffusion2D.cppsrc/pde/NS/BCEulermitAVDiffusion2D.cpp624e1f4e80b49b45e66250088c549689a7df62381535560567000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduFormatting fix 2018-08-29 12:36:07 -0400624e1f4e80b49b45e66250088c549689a7df6238Formatting fixeditsrc/pde/NS/BCEulermitAVDiffusion2D.cppsrc/NonLinearSolver/LineUpdate/HalvingSearchLineUpdate_impl.h84df587da4f2fd66cd3959a5b051caa98f079e5a1535563451000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed residual dump to be what is described in the paramter dictionary 2018-08-29 13:24:11 -040084df587da4f2fd66cd3959a5b051caa98f079e5aFixed residual dump to be what is described in the paramter dictionaryeditsrc/NonLinearSolver/LineUpdate/HalvingSearchLineUpdate_impl.htest/system/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_NACA0004_LamiBL_btest.cpptest/system/IO/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_naca0004_ne64_p1_airfoil_Test_HDGcontinuous.txte73d53c1c28a3206ad37293af32db2c62410d8201535569430000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded pyrite file for uncoupled IBL 2018-08-29 15:03:50 -0400e73d53c1c28a3206ad37293af32db2c62410d820Added pyrite file for uncoupled IBLedittest/system/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_NACA0004_LamiBL_btest.cppaddtest/system/IO/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_naca0004_ne64_p1_airfoil_Test_HDGcontinuous.txttest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpp8bb8684adde0e43a5e9dd1741483df4a4b754e5c1535637388000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduVerified pyrite tests & playing with test cases 2018-08-30 09:56:28 -04008bb8684adde0e43a5e9dd1741483df4a4b754e5cVerified pyrite tests & playing with test casesedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppsrc/Field/FieldVolume_CG_InteriorTrace_impl.htest/system/Asymptotic/Adjoint2D_HDG_Triangle_AD_sansLG_btest.cppsrc/Field/FieldArea_CG_BoundaryTrace_impl.hsrc/Adaptation/MOESS/ErrorModel.cpptest/unit/Field/XField3D_Curved_Hex_btest.cppsrc/Field/FieldArea_CG_BoundaryTrace_Instantiate_2D.cpptest/system/Asymptotic/ErrorOrder_2D_DGAdvective_Annulus_Quad_btest.cpptest/sandbox/Adjoint1D_DGAdvective_AD_ST_toy.cppsrc/BasisFunction/TraceToCellRefCoord.htest/system/LocalSolve/LocalSolve1D_Split_DGBR2_AD_btest.cpptest/sandbox/ErrorOrder_1D_DGBR2_NonLinPoisson_toy.cppsrc/Topology/ElementTopology.htest/system/Asymptotic/ErrorOrder_2D_DGAdvective_Annulus_Triangle_btest.cppsrc/Field/CMakeLists.txttest/sandbox/Solve1D_DGAdvective_BuckleyLeverett_ST_toy.cppsrc/Field/Field_CG_Topology.hsrc/Field/XFieldArea_buildFrom_impl.hsrc/Discretization/Galerkin/SolutionData_Galerkin_Stabilized.hsrc/Field/FieldLine_CG_BoundaryTrace_impl.htest/unit/Field/Field3D_HDG_btest.cppsrc/Discretization/DG/SolutionData_DGAdvective.htest/unit/Discretization/HDG/isValidStateInteriorTrace_HDG_Euler_btest.cppsrc/Field/FieldArea_CG_BoundaryTrace_Instantiate_3D.cpptest/system/Asymptotic/ErrorEstimateOrder_1D_HDG_Line_AD_btest_LGOFF.cppsrc/Field/FieldLine_CG_BoundaryTrace_Instantiate_1D.cppsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.hsrc/Field/FieldLine_CG_Cell_impl.htest/system/Asymptotic/ErrorOrder_1D_DGBR2_AD_btest.cpptest/unit/Field/Field2D_CG_Quad_btest.cpptest/system/Asymptotic/ErrorOrder_1D_DGBR2_Burgers_btest.cppsrc/Adaptation/MOESS/MOESS.cppsrc/Field/HField/GenHField_CG.cpptest/sandbox/Solve1D_EDG_Line_Euler_Sod_ST_toy.cpptest/unit/IO/Field/Field2D_CG_Triangle_pattern.txttest/sandbox/Solve1D_HDG_Burgers_toy_LGOFF.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cppsrc/Field/FieldAssociativityConstructor.htest/system/Asymptotic/ErrorOrder_2D_DGAdvective_Flat_Line_AD_btest.cppsrc/Field/Field_CG_CellConstructor.htest/sandbox/Solve1D_DGAdvective_AD_ST_toy.cppsrc/Field/Partition/XField_Lagrange.cpptest/system/LocalSolve/ElementLocalSolve3D_DGBR2_Tet_AD_btest.cpptest/unit/Discretization/Galerkin/ResidualCell_Galerkin_AD_btest.cppsrc/Field/FieldVolume_CG_Trace_impl.htest/system/Asymptotic/ErrorEstimateOrder_1D_DGBR2_Line_AD_btest.cppsrc/Field/FieldArea_CG_Trace_impl.hsrc/Field/FieldVolume_CG_Cell_impl.htest/system/Asymptotic/Adjoint2D_HDG_Triangle_AD_mitState_btest.cppsrc/Field/Field_impl.htest/system/Asymptotic/ErrorOrder_3D_DGBR2_Sphere_Triangle_AD_btest.cpptest/sandbox/Solve1D_HDG_Burgers_DBC_toy_LGOFF.cpptest/unit/IO/Field/Field1D_CG_pattern.txttest/system/Asymptotic/AWErrorEst_2D_HDG_Triangle_AD_btest_LGOFF.cppsrc/Field/Element/ElementAssociativityLineConstructor.cpptest/unit/Discretization/DG/JacobianTranspose_DGBR2_Triangle_AD_btest.cppsrc/Field/Element/UniqueElem.htest/unit/IO/Field/Field2D_CG_Quad_pattern.txtsrc/Field/Field_CG_TraceConstructor.htest/unit/Field/Field3D_CG_Tetrahedron_btest.cppsrc/Meshing/EPIC/XField_PX.cppsrc/Field/FieldLine_CG_BoundaryTrace_Instantiate_2D.cppsrc/Field/XField_impl.htest/unit/Discretization/DG/Adjoint_LiftingOperator_DGBR2_Triangle_AD_btest.cppsrc/Field/XFieldArea_Local_Split_Linear.cppsrc/Field/XFieldLine_buildFrom_impl.htest/system/Asymptotic/ErrorOrder_3D_DGBR2_Tet_AD_btest.cppsrc/Discretization/HDG/Field_HDG.hsrc/Field/FieldVolume_CG_BoundaryTrace_impl.hsrc/Field/FieldLine_CG_Cell.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeIBL3eqmClosure_btest.cpptest/sandbox/Adjoint1D_DGAdvective_BuckleyLeverett_ST_toy.cppsrc/Field/Field_CG_Topology.cppsrc/MPI/continuousElementMap.hsrc/Field/FieldArea_CG_BoundaryTrace.hsrc/Field/Element/ElementAssociativityLineConstructor.htest/system/Asymptotic/Solve2D_DGAdvective_LinearRobin_mitLG_sansLG_Consistency_AD_btest.cpptest/unit/Field/FieldSequence_btest.cppsrc/Field/Field.htest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cppsrc/Adaptation/MOESS/CostModel_LogEuclidean.htest/unit/Discretization/HDG/AuxiliaryAdjoint_HDG_AD_btest.cppsrc/Discretization/HDG/Instantiate/AlgebraicEquationSet_HDG_Euler2D_PrimitiveRhoPressure.cppsrc/Field/Field_CG_CellBase.hxxtest/unit/Field/Field2D_HDG_btest.cpptest/system/Asymptotic/AWErrorEst_1D_HDG_Line_AD_btest_LGOFF.cpptest/unit/Field/XField3D_Curved_Tet_btest.cppsrc/Adaptation/MOESS/CostModel_LogEuclidean.cpptest/system/Asymptotic/ErrorOrder_2D_DGBR2_Triangle_AD_btest.cppsrc/Meshing/EPIC/WriteMeshMetric_Epic.cppsrc/Field/FieldLine_CG_BoundaryTrace.hsrc/BasisFunction/TraceToCellRefCoord_Tetrahedron.cppsrc/Field/FieldArea_CG_InteriorTrace_impl.htest/sandbox/Solve2D_HDG_Triangle_AD_STtrick_toy_LGOFF.cpptest/sandbox/Solve1D_HDG_Line_Euler_Sod_ST_toy.cpptest/unit/Discretization/Galerkin/UpdateFraction_Euler_btest.cpptest/sandbox/Solve2D_DGAdvective_AdvectionOnly_Circle_toy.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cpptest/sandbox/Solve2D_DGBR2_LinearRobin_mitLG_sansLG_Consistency_AD_toy.cpptest/system/Asymptotic/Adjoint2D_DGAdvective_Triangle_AD_btest.cpptest/system/Asymptotic/ErrorOrder_2D_HDG_Triangle_AD_btest.cppsrc/Field/Field_DG_CellBase_impl.htest/unit/Field/XField2D_Curved_btest.cpptest/system/Asymptotic/ErrorOrder_1D_HDG_AD_btest.cpptest/sandbox/Solve1D_HDG_AD_HB_toy_LGOFF.cppsrc/tools/split_cat_std_vector.htest/unit/Field/Field2D_CG_Triangle_btest.cpptest/system/Asymptotic/Adjoint2D_DGBR2_Triangle_AD_btest.cpptest/sandbox/Solve1D_HDG_AD_ST_toy_LGOFF.cpptest/system/Asymptotic/ErrorOrder_2D_EDG_Triangle_AD_btest.cpptest/unit/Discretization/Galerkin/isValidStateCell_Euler_btest.cppsrc/Discretization/HDG/AlgebraicEquationSet_HDG.htest/unit/Field/Field3D_CG_Hexahedron_btest.cppsrc/Field/XFieldVolume_Local_Split_Linear_Isotropic.cppsrc/Field/XFieldVolume_Local_Split_Linear_Edge.cppsrc/Field/XFieldVolume_buildFrom_impl.htest/unit/Adaptation/MOESS/CostModel_LogEuclidian_btest.cpptest/unit/Meshing/EPIC/XField_PX_btest.cpptest/system/Asymptotic/ErrorOrder_1D_DGBR2_AD_BDF_btest.cppsrc/Field/FieldArea_CG_Cell_impl.htest/unit/Field/Field2D_DG_Quad_btest.cppsrc/Field/Field_CG_TraceConstructor.cppsrc/Field/Field_CG_CellConstructor.cpptest/system/Asymptotic/ErrorOrder_3D_DGBR2_Periodic_Hex_AD_btest.cpptest/unit/Field/Field1D_CG_btest.cppsrc/Field/Field_CG_TraceBase.hxxtest/sandbox/Solve2D_DGBR2_Triangle_AD_LocalRefine_toy.cpptest/system/LocalSolve/LocalSolve1D_DGBR2_AD_btest.cpptest/system/Asymptotic/ErrorOrder_1D_HDG_Burgers_btest.cppsrc/Discretization/DG/SolutionData_DGBR2.htest/unit/Field/Field2D_DG_Triangle_btest.cppsrc/BasisFunction/TraceToCellRefCoord_Hexahedron.cppsrc/Field/Element/UniqueElem.cpptest/system/Asymptotic/ErrorOrder_1D_DGBR2_TwoPhase_ST_btest.cpptest/unit/Field/GenHField_CG_btest.cpptest/system/AnalyticSolve/AnalyticSolve_HDG_AD_btest.cpptest/unit/Discretization/DG/Adjoint_LiftingOperator_DGBR2_Triangle_NS_btest.cpp2867ea8ccd8ec62ac2b035139d1f2d111f9008371535675050000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduComplete rework of CG field construction. Works in parallel now. Removed zero initialization from fields. 2018-08-30 20:24:10 -04002867ea8ccd8ec62ac2b035139d1f2d111f900837Complete rework of CG field construction. Works in parallel now. Removed zero initialization from fields.editsrc/Field/Partition/XField_Lagrange.cppedittest/unit/Field/FieldSequence_btest.cppeditsrc/Field/FieldVolume_CG_Trace_impl.heditsrc/Topology/ElementTopology.hedittest/system/Asymptotic/ErrorOrder_1D_DGBR2_AD_BDF_btest.cppeditsrc/Discretization/DG/SolutionData_DGAdvective.hedittest/system/Asymptotic/ErrorOrder_2D_HDG_Triangle_AD_btest.cppeditsrc/Field/Field_CG_Topology.cppeditsrc/Field/Field_CG_CellConstructor.hedittest/sandbox/Solve1D_HDG_AD_HB_toy_LGOFF.cppeditsrc/Field/Element/UniqueElem.heditsrc/Field/FieldArea_CG_BoundaryTrace_Instantiate_2D.cppedittest/system/Asymptotic/ErrorOrder_1D_DGBR2_AD_btest.cppeditsrc/BasisFunction/TraceToCellRefCoord_Hexahedron.cppedittest/unit/Field/XField2D_Curved_btest.cppeditsrc/Discretization/DG/SolutionData_DGBR2.heditsrc/Field/Field.hedittest/system/Asymptotic/ErrorOrder_2D_DGAdvective_Annulus_Quad_btest.cppeditsrc/tools/split_cat_std_vector.heditsrc/Field/FieldArea_CG_InteriorTrace_impl.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeIBL3eqmClosure_btest.cppeditsrc/Field/XFieldVolume_buildFrom_impl.hedittest/unit/Field/Field2D_DG_Triangle_btest.cppeditsrc/BasisFunction/TraceToCellRefCoord.heditsrc/Field/Field_DG_CellBase_impl.hedittest/sandbox/Solve1D_HDG_AD_ST_toy_LGOFF.cppedittest/sandbox/Solve1D_HDG_Burgers_toy_LGOFF.cppedittest/system/Asymptotic/ErrorOrder_1D_DGBR2_TwoPhase_ST_btest.cppeditsrc/Adaptation/MOESS/ErrorModel.cppedittest/unit/Discretization/DG/JacobianTranspose_DGBR2_Triangle_AD_btest.cppeditsrc/Discretization/HDG/AlgebraicEquationSet_HDG.hedittest/system/Asymptotic/AWErrorEst_2D_HDG_Triangle_AD_btest_LGOFF.cppeditsrc/Field/Field_CG_Topology.hedittest/sandbox/Adjoint1D_DGAdvective_AD_ST_toy.cppedittest/system/Asymptotic/AWErrorEst_1D_HDG_Line_AD_btest_LGOFF.cppeditsrc/Field/FieldArea_CG_Cell_impl.heditsrc/Field/FieldVolume_CG_BoundaryTrace_impl.haddsrc/Field/FieldLine_CG_BoundaryTrace_Instantiate_1D.cppeditsrc/Field/Element/ElementAssociativityLineConstructor.heditsrc/Meshing/EPIC/WriteMeshMetric_Epic.cppedittest/system/Asymptotic/ErrorOrder_1D_HDG_AD_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cppeditsrc/Field/CMakeLists.txtedittest/system/Asymptotic/ErrorOrder_3D_DGBR2_Periodic_Hex_AD_btest.cppeditsrc/Field/FieldVolume_CG_InteriorTrace_impl.hedittest/system/LocalSolve/ElementLocalSolve3D_DGBR2_Tet_AD_btest.cppeditsrc/MPI/continuousElementMap.hedittest/unit/Adaptation/MOESS/CostModel_LogEuclidian_btest.cppeditsrc/Field/XField_impl.hedittest/system/Asymptotic/Solve2D_DGAdvective_LinearRobin_mitLG_sansLG_Consistency_AD_btest.cppeditsrc/BasisFunction/TraceToCellRefCoord_Tetrahedron.cppedittest/system/Asymptotic/ErrorOrder_2D_DGAdvective_Flat_Line_AD_btest.cppedittest/system/LocalSolve/LocalSolve1D_Split_DGBR2_AD_btest.cppedittest/unit/Field/XField3D_Curved_Tet_btest.cppeditsrc/Field/XFieldVolume_Local_Split_Linear_Edge.cppedittest/unit/Field/GenHField_CG_btest.cppeditsrc/Field/Element/UniqueElem.cppeditsrc/Field/Element/ElementAssociativityLineConstructor.cppaddsrc/Field/Field_CG_TraceConstructor.cppedittest/system/Asymptotic/ErrorEstimateOrder_1D_DGBR2_Line_AD_btest.cppedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cppdeletesrc/Field/Field_CG_CellBase.hxxeditsrc/Field/XFieldLine_buildFrom_impl.hedittest/unit/Meshing/EPIC/XField_PX_btest.cppeditsrc/Field/XFieldArea_buildFrom_impl.heditsrc/Adaptation/MOESS/MOESS.cppedittest/unit/IO/Field/Field2D_CG_Triangle_pattern.txtedittest/sandbox/Solve1D_HDG_Burgers_DBC_toy_LGOFF.cppedittest/system/Asymptotic/Adjoint2D_HDG_Triangle_AD_sansLG_btest.cppaddsrc/Field/FieldLine_CG_BoundaryTrace_impl.heditsrc/Field/FieldArea_CG_BoundaryTrace_impl.hedittest/unit/Field/Field3D_CG_Tetrahedron_btest.cppedittest/sandbox/Solve1D_DGAdvective_BuckleyLeverett_ST_toy.cppedittest/system/Asymptotic/ErrorOrder_2D_DGAdvective_Annulus_Triangle_btest.cppedittest/sandbox/Solve2D_DGAdvective_AdvectionOnly_Circle_toy.cppedittest/unit/Field/XField3D_Curved_Hex_btest.cppedittest/system/Asymptotic/Adjoint2D_DGAdvective_Triangle_AD_btest.cppedittest/unit/Field/Field3D_HDG_btest.cppedittest/unit/Field/Field2D_CG_Quad_btest.cppedittest/system/AnalyticSolve/AnalyticSolve_HDG_AD_btest.cppedittest/unit/Discretization/DG/Adjoint_LiftingOperator_DGBR2_Triangle_NS_btest.cppedittest/system/Asymptotic/Adjoint2D_HDG_Triangle_AD_mitState_btest.cppeditsrc/Field/FieldLine_CG_Cell_impl.heditsrc/Field/FieldArea_CG_BoundaryTrace_Instantiate_3D.cppeditsrc/Field/FieldLine_CG_Cell.heditsrc/Field/Field_CG_CellConstructor.cppedittest/unit/Field/Field2D_CG_Triangle_btest.cppedittest/system/Asymptotic/ErrorOrder_2D_EDG_Triangle_AD_btest.cppeditsrc/Field/Field_impl.heditsrc/Field/FieldLine_CG_BoundaryTrace.heditsrc/Adaptation/MOESS/CostModel_LogEuclidean.cppedittest/unit/Discretization/HDG/isValidStateInteriorTrace_HDG_Euler_btest.cppedittest/unit/Discretization/Galerkin/UpdateFraction_Euler_btest.cppedittest/sandbox/Solve2D_HDG_Triangle_AD_STtrick_toy_LGOFF.cppedittest/unit/Field/Field2D_DG_Quad_btest.cppedittest/unit/IO/Field/Field2D_CG_Quad_pattern.txteditsrc/Discretization/HDG/Instantiate/AlgebraicEquationSet_HDG_Euler2D_PrimitiveRhoPressure.cppeditsrc/Discretization/Galerkin/SolutionData_Galerkin_Stabilized.hedittest/sandbox/Solve1D_HDG_Line_Euler_Sod_ST_toy.cppedittest/system/Asymptotic/ErrorOrder_3D_DGBR2_Tet_AD_btest.cppeditsrc/Field/FieldArea_CG_Trace_impl.hedittest/unit/Discretization/HDG/AuxiliaryAdjoint_HDG_AD_btest.cppdeletesrc/Field/Field_CG_TraceBase.hxxedittest/system/Asymptotic/ErrorEstimateOrder_1D_HDG_Line_AD_btest_LGOFF.cppeditsrc/Field/HField/GenHField_CG.cppeditsrc/Field/FieldVolume_CG_Cell_impl.hedittest/system/Asymptotic/ErrorOrder_2D_DGBR2_Triangle_AD_btest.cppedittest/sandbox/Solve2D_DGBR2_Triangle_AD_LocalRefine_toy.cppedittest/system/Asymptotic/ErrorOrder_1D_DGBR2_Burgers_btest.cppedittest/unit/Discretization/DG/Adjoint_LiftingOperator_DGBR2_Triangle_AD_btest.cppeditsrc/Field/XFieldVolume_Local_Split_Linear_Isotropic.cppeditsrc/Field/FieldArea_CG_BoundaryTrace.heditsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.hedittest/system/LocalSolve/LocalSolve1D_DGBR2_AD_btest.cppedittest/unit/Field/Field2D_HDG_btest.cppedittest/unit/Discretization/Galerkin/ResidualCell_Galerkin_AD_btest.cppedittest/unit/Discretization/Galerkin/isValidStateCell_Euler_btest.cppedittest/sandbox/Adjoint1D_DGAdvective_BuckleyLeverett_ST_toy.cppedittest/system/Asymptotic/ErrorOrder_1D_HDG_Burgers_btest.cppeditsrc/Field/XFieldArea_Local_Split_Linear.cppedittest/sandbox/Solve1D_EDG_Line_Euler_Sod_ST_toy.cppedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppedittest/sandbox/ErrorOrder_1D_DGBR2_NonLinPoisson_toy.cppeditsrc/Adaptation/MOESS/CostModel_LogEuclidean.hedittest/unit/Field/Field1D_CG_btest.cppedittest/sandbox/Solve2D_DGBR2_LinearRobin_mitLG_sansLG_Consistency_AD_toy.cppaddsrc/Field/Field_CG_TraceConstructor.hdeletesrc/Discretization/HDG/Field_HDG.haddsrc/Field/FieldLine_CG_BoundaryTrace_Instantiate_2D.cppeditsrc/Meshing/EPIC/XField_PX.cppedittest/unit/IO/Field/Field1D_CG_pattern.txtedittest/unit/Field/Field3D_CG_Hexahedron_btest.cppedittest/system/Asymptotic/Adjoint2D_DGBR2_Triangle_AD_btest.cppedittest/system/Asymptotic/ErrorOrder_3D_DGBR2_Sphere_Triangle_AD_btest.cppeditsrc/Field/FieldAssociativityConstructor.hedittest/sandbox/Solve1D_DGAdvective_AD_ST_toy.cppsrc/Field/Field_CG_TraceConstructor.cppsrc/Field/Element/UniqueElem.hsrc/Field/Field_CG_CellConstructor.cppsrc/Field/Element/UniqueElem.cppsrc/UserInterfaces/PythonUI/PySANS_NS_NACA0012.cpptest/unit/Field/XField3D_Curved_Tet_btest.cpptest/unit/Field/XField3D_Curved_Hex_btest.cppa7a702a7b8543254c4077f48e355321ebdb5cefc1535682822000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed some warnings and compile errors 2018-08-30 22:33:42 -0400a7a702a7b8543254c4077f48e355321ebdb5cefcFixed some warnings and compile errorseditsrc/UserInterfaces/PythonUI/PySANS_NS_NACA0012.cppeditsrc/Field/Element/UniqueElem.heditsrc/Field/Field_CG_TraceConstructor.cppedittest/unit/Field/XField3D_Curved_Tet_btest.cppeditsrc/Field/Element/UniqueElem.cppeditsrc/Field/Field_CG_CellConstructor.cppedittest/unit/Field/XField3D_Curved_Hex_btest.cppsrc/Field/Field_CG_Topology.cppdce305fe718a5729c02d60903507bf661754c49a1535684933000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMissing include 2018-08-30 23:08:53 -0400dce305fe718a5729c02d60903507bf661754c49aMissing includeeditsrc/Field/Field_CG_Topology.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeIBL3eqmClosure_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppe855fc938f5614d82aa555b20fc5513a2544b64f1535712953000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMore field initializations 2018-08-31 06:55:53 -0400e855fc938f5614d82aa555b20fc5513a2544b64fMore field initializationsedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeIBL3eqmClosure_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.h8375a291eb7c1a90c62a4125a163cac2840ca3861535713467000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduSlight efficiency improvement for HDG adjoint calculation 2018-08-31 07:04:27 -04008375a291eb7c1a90c62a4125a163cac2840ca386Slight efficiency improvement for HDG adjoint calculationeditsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.htest/unit/Discretization/Galerkin/UpdateFraction_Euler_btest.cpp563e234908f04e6d9b33019a94fbf35669c102881535725637000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed another uninitialized field 2018-08-31 10:27:17 -0400563e234908f04e6d9b33019a94fbf35669c10288Fixed another uninitialized fieldedittest/unit/Discretization/Galerkin/UpdateFraction_Euler_btest.cppsrc/pde/IBL/PDEIBLUniField.h53c8ddf742b3930f4285c6ba9dd0c6068c5bcedd1535736495000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduMinor edits 2018-08-31 13:28:15 -040053c8ddf742b3930f4285c6ba9dd0c6068c5bceddMinor editseditsrc/pde/IBL/PDEIBLUniField.htest/unit/Discretization/DG/AlgebraicEquationSet_DGBR2_Triangle_AD_btest.cpptest/unit/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Triangle_AD_btest.cppsrc/Field/Element/ElementAssociativityLineConstructor.hsrc/Adaptation/MOESS/ErrorModel.cpptest/unit/Discretization/DG/AlgebraicEquationSet_DGBR2_BuckleyLeverett_ST_btest.cppsrc/Discretization/Galerkin/JacobianCell_Galerkin_BDF.htest/sandbox/Solve3D_CG_NACA_LIP_Darmofal_toy.cppsrc/Field/FieldVolume_CG_BoundaryTrace.htest/sandbox/ErrorOrder_1D_CGStab_AD_toy.cppsrc/Discretization/Galerkin/FunctionalBoundaryTrace_Galerkin.htest/unit/Discretization/DG/AlgebraicEquationSet_DGAdvective_Triangle_AD_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBL_Panel_btest.cpptest/sandbox/Solve3D_CG_NACA_LIP_toy.cpptest/unit/Discretization/DG/CMakeLists.txttest/sandbox/Solve3D_CG_NACA_LIP_Drela_toy.cppsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized.htest/unit/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_BuckleyLeverett_ST_btest.cpptest/sandbox/Solve3D_CG_LIP_KuttaHACK_toy.cppsrc/pde/AdvectionDiffusion/ViscousFlux3D.hsrc/Field/Field_DG_CellBase_impl.hsrc/Discretization/Galerkin/JacobianCell_Galerkin_HB.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin.hsrc/Adaptation/MOESS/SolverInterface.hsrc/Discretization/Galerkin/JacobianCell_Galerkin.htest/unit/Discretization/Galerkin/CMakeLists.txtsrc/Field/Field_CG_CellConstructor.hsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion3D.htest/unit/Discretization/Galerkin/JacobianFunctionalBoundaryTrace_Galerkin_HSM2D_btest.cpptest/system/LocalSolve/ElementLocalSolve3D_DGBR2_Tet_AD_btest.cpptest/sandbox/Solve3D_CG_NACA_FP_Drela_toy.cppsrc/Field/Element/ElementAssociativityNodeConstructor.cpptest/unit/Field/XField1D_Curved_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBL_Panel_btest.cppsrc/Discretization/Galerkin/JacobianBoundaryTrace_Galerkin.htest/sandbox/Solve2D_CGStabilized_Triangle_Euler_GaussianBump_toy.cpptest/sandbox/Solve3D_CG_NACA_LIP2_toy.cppsrc/Field/Field_DG_BoundaryTraceBase_impl.hsrc/UserInterfaces/LIPSolver.cpptest/unit/ErrorEstimate/ErrorEstimateBoundaryTrace_Galerkin_AD_btest.cpptest/unit/Field/Field3D_Local_Split_DG_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/unit/Discretization/HDG/AlgebraicEquationSet_HDG_BuckleyLeverett_ST_btest.cppsrc/Discretization/FV_TPFA/AlgebraicEquationSet_FV_TPFA.htest/unit/Discretization/DG/AlgebraicEquationSet_DGAdvective_BuckleyLeverett_ST_btest.cppsrc/Discretization/DG/AlgebraicEquationSet_TransitionIBL.hsrc/Field/Field_DG_InteriorTraceBase_impl.htest/unit/Discretization/Galerkin/FunctionalCell_Galerkin_btest.cpptest/system/LocalSolve/ElementLocalSolve3D_DGAdvective_Tet_AD_btest.cpptest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_FlatPlate_toy.cpptest/unit/Field/Field2D_Local_Split_DG_btest.cppsrc/Field/Element/ElementAssociativityNodeConstructor.hsrc/Field/XFieldLine_buildFrom_impl.hsrc/Field/FieldVolume_CG_BoundaryTrace_impl.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpp58392daeb49a2af4ab5a101a355b7fc8129e5e711535756305000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduCG works in parallel! 2018-08-31 18:58:25 -040058392daeb49a2af4ab5a101a355b7fc8129e5e71CG works in parallel!editsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized.hedittest/sandbox/Solve3D_CG_NACA_LIP_Drela_toy.cppedittest/system/LocalSolve/ElementLocalSolve3D_DGAdvective_Tet_AD_btest.cppedittest/sandbox/Solve3D_CG_LIP_KuttaHACK_toy.cppedittest/sandbox/Solve3D_CG_NACA_LIP2_toy.cppeditsrc/Discretization/Galerkin/JacobianCell_Galerkin_BDF.heditsrc/Discretization/DG/AlgebraicEquationSet_TransitionIBL.heditsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion3D.hedittest/sandbox/Solve3D_CG_NACA_FP_Drela_toy.cppeditsrc/Field/Element/ElementAssociativityNodeConstructor.heditsrc/Discretization/Galerkin/JacobianCell_Galerkin.heditsrc/Field/FieldVolume_CG_BoundaryTrace_impl.heditsrc/Field/Field_DG_CellBase_impl.hedittest/unit/Discretization/DG/AlgebraicEquationSet_DGBR2_Triangle_AD_btest.cppeditsrc/Discretization/FV_TPFA/AlgebraicEquationSet_FV_TPFA.heditsrc/Field/XFieldLine_buildFrom_impl.hedittest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_FlatPlate_toy.cppeditsrc/Adaptation/MOESS/SolverInterface.heditsrc/Discretization/Galerkin/JacobianCell_Galerkin_HB.heditsrc/Field/Field_CG_CellConstructor.hedittest/unit/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Triangle_AD_btest.cppeditsrc/Field/Field_DG_BoundaryTraceBase_impl.hedittest/sandbox/Solve3D_CG_NACA_LIP_Darmofal_toy.cppedittest/unit/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_BuckleyLeverett_ST_btest.cppeditsrc/Discretization/Galerkin/JacobianBoundaryTrace_Galerkin.heditsrc/Field/Element/ElementAssociativityNodeConstructor.cppeditsrc/Field/Field_DG_InteriorTraceBase_impl.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppedittest/system/LocalSolve/ElementLocalSolve3D_DGBR2_Tet_AD_btest.cppedittest/unit/Discretization/Galerkin/FunctionalCell_Galerkin_btest.cppedittest/unit/Discretization/HDG/AlgebraicEquationSet_HDG_BuckleyLeverett_ST_btest.cppedittest/sandbox/Solve3D_CG_NACA_LIP_toy.cppedittest/unit/Discretization/Galerkin/CMakeLists.txtedittest/unit/Field/XField1D_Curved_btest.cppedittest/unit/Discretization/DG/CMakeLists.txtedittest/unit/Discretization/DG/AlgebraicEquationSet_DGAdvective_Triangle_AD_btest.cppedittest/unit/Discretization/Galerkin/JacobianFunctionalBoundaryTrace_Galerkin_HSM2D_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppeditsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin.hedittest/sandbox/Solve2D_CGStabilized_Triangle_Euler_GaussianBump_toy.cppedittest/unit/Field/Field2D_Local_Split_DG_btest.cppeditsrc/Field/FieldVolume_CG_BoundaryTrace.heditsrc/UserInterfaces/LIPSolver.cppedittest/unit/ErrorEstimate/ErrorEstimateBoundaryTrace_Galerkin_AD_btest.cppedittest/unit/Field/Field3D_Local_Split_DG_btest.cppeditsrc/pde/AdvectionDiffusion/ViscousFlux3D.hedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBL_Panel_btest.cppeditsrc/Discretization/Galerkin/FunctionalBoundaryTrace_Galerkin.hedittest/unit/Discretization/DG/AlgebraicEquationSet_DGAdvective_BuckleyLeverett_ST_btest.cppedittest/unit/Discretization/DG/AlgebraicEquationSet_DGBR2_BuckleyLeverett_ST_btest.cppeditsrc/Field/Element/ElementAssociativityLineConstructor.heditsrc/Adaptation/MOESS/ErrorModel.cppedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBL_Panel_btest.cppedittest/sandbox/ErrorOrder_1D_CGStab_AD_toy.cpptest/unit/Discretization/DG/AlgebraicEquationSet_DGBR2_Triangle_AD_btest.cppsrc/Field/Partition/XField_Lagrange_balance_impl.htest/unit/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Triangle_AD_btest.cpptest/unit/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized_Triangle_AD_btest.cppsrc/Field/output_Tecplot.cppa3ce23592cd38ad3d1b7d27e1556f604e27b4bba1535907264000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduCG was missing boundary elements in parallel. Now it works! 2018-09-02 12:54:24 -0400a3ce23592cd38ad3d1b7d27e1556f604e27b4bbaCG was missing boundary elements in parallel. Now it works!edittest/unit/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized_Triangle_AD_btest.cppeditsrc/Field/output_Tecplot.cppedittest/unit/Discretization/DG/AlgebraicEquationSet_DGBR2_Triangle_AD_btest.cppeditsrc/Field/Partition/XField_Lagrange_balance_impl.hedittest/unit/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Triangle_AD_btest.cppsrc/Field/Partition/XField_Lagrange_balance_impl.h1ff11388c2a654f65c2d442737fb1a92abf17fde1535913145000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed warning 2018-09-02 14:32:25 -04001ff11388c2a654f65c2d442737fb1a92abf17fdeFixed warningeditsrc/Field/Partition/XField_Lagrange_balance_impl.htest/unit/Field/Element/ElementXFieldVolume_Tetrahedron_btest.cpptest/unit/Field/Element/ElementXFieldAreaBase_Quad_btest.cpptest/unit/Field/Element/ElementXFieldVolume_Hexahedron_btest.cpptest/unit/Field/Element/ElementXFieldAreaBase_Triangle_btest.cppsrc/Field/Element/ElementXFieldVolume_Instantiate_3D.cppsrc/Field/XField_EdgeLocal_impl.hsrc/Field/Element/ElementXFieldArea_Instantiate_2D.cpp8addd9a38af15c915dc25eff9ba71e6e36a0c1ec1535988039000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded evalReferenceCoordinateHessian for 3D. More unit testing for evalReferenceCoordinateHessian 2018-09-03 11:20:39 -04008addd9a38af15c915dc25eff9ba71e6e36a0c1ecAdded evalReferenceCoordinateHessian for 3D. More unit testing for evalReferenceCoordinateHessianeditsrc/Field/Element/ElementXFieldVolume_Instantiate_3D.cppedittest/unit/Field/Element/ElementXFieldVolume_Tetrahedron_btest.cppedittest/unit/Field/Element/ElementXFieldVolume_Hexahedron_btest.cppedittest/unit/Field/Element/ElementXFieldAreaBase_Quad_btest.cppeditsrc/Field/XField_EdgeLocal_impl.heditsrc/Field/Element/ElementXFieldArea_Instantiate_2D.cppedittest/unit/Field/Element/ElementXFieldAreaBase_Triangle_btest.cpptest/unit/Field/Element/ElementXFieldAreaBase_Quad_btest.cpptest/unit/Field/Element/ElementXFieldVolume_Hexahedron_btest.cpp8650cb81a7a1b171ed37d7f2fb704b0d1dcb96b41535997542000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduForgot some DOFs 2018-09-03 13:59:02 -04008650cb81a7a1b171ed37d7f2fb704b0d1dcb96b4Forgot some DOFsedittest/unit/Field/Element/ElementXFieldVolume_Hexahedron_btest.cppedittest/unit/Field/Element/ElementXFieldAreaBase_Quad_btest.cpptest/unit/Field/Element/ElementXFieldVolume_Tetrahedron_btest.cpptest/unit/Field/Element/ElementXFieldAreaBase_Quad_btest.cpptest/unit/Field/Element/ElementXFieldVolume_Hexahedron_btest.cpptest/unit/Field/Element/ElementXFieldAreaBase_Triangle_btest.cpp4860d828bdc8fddd73c7a609c942048a86d035991536003833000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduRelaxed tolerances 2018-09-03 15:43:53 -04004860d828bdc8fddd73c7a609c942048a86d03599Relaxed tolerancesedittest/unit/Field/Element/ElementXFieldVolume_Hexahedron_btest.cppedittest/unit/Field/Element/ElementXFieldAreaBase_Quad_btest.cppedittest/unit/Field/Element/ElementXFieldAreaBase_Triangle_btest.cppedittest/unit/Field/Element/ElementXFieldVolume_Tetrahedron_btest.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cppsrc/Adaptation/MOESS/SolverInterface.htest/system/LocalSolve/ElementLocalSolve3D_DGAdvective_Tet_AD_btest.cpptest/system/LocalSolve/EdgeLocalSolve3D_Dual_Galerkin_Stabilized_AD_btest.cpp5ed919487f9ccbfdd15b36889a8420e5b531b9c51536015840000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduLocal solve updates 2018-09-03 19:04:00 -04005ed919487f9ccbfdd15b36889a8420e5b531b9c5Local solve updatesedittest/system/LocalSolve/ElementLocalSolve3D_DGAdvective_Tet_AD_btest.cppeditsrc/Adaptation/MOESS/SolverInterface.hedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cppaddtest/system/LocalSolve/EdgeLocalSolve3D_Dual_Galerkin_Stabilized_AD_btest.cpptest/system/LocalSolve/EdgeLocalSolve3D_Dual_Galerkin_Stabilized_AD_btest.cppsrc/Discretization/Galerkin/JacobianBoundaryTrace_Galerkin.h3362c064c4487dc437b3e9a29fc52f6168397b2b1536019777000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduModified tolerances 2018-09-03 20:09:37 -04003362c064c4487dc437b3e9a29fc52f6168397b2bModified tolerancesedittest/system/LocalSolve/EdgeLocalSolve3D_Dual_Galerkin_Stabilized_AD_btest.cppeditsrc/Discretization/Galerkin/JacobianBoundaryTrace_Galerkin.hsrc/Field/XFieldVolume_EdgeLocal.cppsrc/Field/XField_EdgeLocal_impl.hsrc/Discretization/Galerkin/JacobianBoundaryTrace_Galerkin.h9b9cc0868f7612a57bc84267a316011e86d83bc91536023441000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduRemove print statements 2018-09-03 21:10:41 -04009b9cc0868f7612a57bc84267a316011e86d83bc9Remove print statementseditsrc/Field/XField_EdgeLocal_impl.heditsrc/Field/XFieldVolume_EdgeLocal.cppeditsrc/Discretization/Galerkin/JacobianBoundaryTrace_Galerkin.htest/system/LocalSolve/ElementLocalSolve1D_DGBR2_Triangle_AD_btest.cpptest/system/LocalSolve/LocalSolve1D_DGBR2_AD_btest.cppf519d30af89979a7332258d3a962d046e2d234b31536029549000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdated 1D local solve and removed depricated test 2018-09-03 22:52:29 -0400f519d30af89979a7332258d3a962d046e2d234b3Updated 1D local solve and removed depricated testdeletetest/system/LocalSolve/LocalSolve1D_DGBR2_AD_btest.cppedittest/system/LocalSolve/ElementLocalSolve1D_DGBR2_Triangle_AD_btest.cppsrc/Adaptation/MOESS/ErrorModel.cppsrc/Field/output_Tecplot.cppe0682522f2354d175edd7c1f45161d331467826e1536089845000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduTecplog xfld dump now includes node+cell ranks 2018-09-04 15:37:25 -0400e0682522f2354d175edd7c1f45161d331467826eTecplog xfld dump now includes node+cell rankseditsrc/Field/output_Tecplot.cppeditsrc/Adaptation/MOESS/ErrorModel.cppsrc/Discretization/DG/IntegrandBoundaryTrace_OutputWeightRsd_DGBR2.hsrc/Adaptation/MOESS/SolverInterface.hsrc/Adaptation/MOESS/SolverInterface_DGBR2.hsrc/Discretization/DG/IntegrateBoundaryTrace_Dispatch_DGBR2.h8c305983809da5ed6acf3ce2b25f754502550a031536100715000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduInclude Galerkin integrands for DGBR2 boundary output functionals 2018-09-04 18:38:35 -04008c305983809da5ed6acf3ce2b25f754502550a03Include Galerkin integrands for DGBR2 boundary output functionalseditsrc/Discretization/DG/IntegrandBoundaryTrace_OutputWeightRsd_DGBR2.heditsrc/Adaptation/MOESS/SolverInterface_DGBR2.heditsrc/Discretization/DG/IntegrateBoundaryTrace_Dispatch_DGBR2.heditsrc/Adaptation/MOESS/SolverInterface.hsrc/Adaptation/MOESS/SolverInterface_DGBR2.hsrc/Discretization/DG/IntegrateBoundaryTrace_Dispatch_DGBR2.h30155747768ddf14eb5729e7f57a0085a57b36871536115947000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed the fix 2018-09-04 22:52:27 -040030155747768ddf14eb5729e7f57a0085a57b3687Fixed the fixeditsrc/Adaptation/MOESS/SolverInterface_DGBR2.heditsrc/Discretization/DG/IntegrateBoundaryTrace_Dispatch_DGBR2.hsrc/Adaptation/MOESS/SolverInterface_DGBR2.h86dd0f2b1dfc657898d5856ff853fad86595b6361536118196000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMissing include 2018-09-04 23:29:56 -040086dd0f2b1dfc657898d5856ff853fad86595b636Missing includeeditsrc/Adaptation/MOESS/SolverInterface_DGBR2.htest/sandbox/Solve3D_CGStabilized_RANSSA_HemisphereCylinder_toy.cpptest/sandbox/Adapt1D_Galerkin_Stabilized_AD_BoundaryLayer_toy.cpptest/sandbox/Solve2D_CGStabilized_Triangle_RANSSA_Joukowski_toy.cpptest/system/LocalSolve/EdgeLocalSolve3D_Dual_Galerkin_Stabilized_AD_btest.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_Euler_CubicSource_toy.cpptest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_OjedaMMS_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_L2_CornerSingularity_toy.cpptest/sandbox/ErrorOrder_1D_CGStab_AD_toy.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cppsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized.htest/system/Adaptation/SolverInterface_Galerkin_Stabilized_btest.cpptest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_Joukowski_toy.cpptest/system/Asymptotic/ErrorEstimateOrder_2D_CG_Triangle_AD_btest.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_Helmholtz_toy.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AR_btest.cpptest/sandbox/ErrorOrder_2D_CGStabilizedLifted_Triangle_AD_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AR_toy.cpptest/sandbox/ErrorOrder_2D_CGStabilized_Triangle_AD_toy.cpptest/sandbox/Solve2D_CGStabilized_Triangle_Euler_GaussianBump_toy.cpptest/system/LocalSolve/EdgeLocalSolve2D_Primal_Galerkin_Stabilized_Triangle_AD_btest.cpptest/system/LocalSolve/EdgeLocalSolve1D_Dual_Galerkin_Stabilized_Line_AD_btest.cpptest/unit/ErrorEstimate/ErrorEstimateCell_Galerkin_AD_btest.cpptest/sandbox/Solve3D_CGStabilized_RANSSA_CRM_Sub_toy.cpptest/system/Asymptotic/ErrorEstimateOrder_1D_CG_Line_AD_btest.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_Poisson_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cpptest/unit/ErrorEstimate/ErrorEstimate_Galerkin_AD_btest.cpptest/unit/ErrorEstimate/ErrorEstimateNodal_Galerkin_AD_btest.cpptest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_FlatPlate_toy.cpptest/system/Asymptotic/ErrorEstimateOrder_2D_CG_Triangle_RD_btest.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/system/Asymptotic/ErrorOrder_2D_CGStabilized_RANS_MMS_btest.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_Euler_btest.cppsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Output_Stabilized.hsrc/Discretization/Galerkin/Stabilization_Galerkin.htest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_BackwardsStep_toy.cpptest/unit/ErrorEstimate/ErrorEstimateCell_PrimalStrongForm_Galerkin_AD_btest.cpptest/sandbox/Adapt1D_Galerkin_Stabilized_AR_toy.cpp082b9bfa0ce99be202f1c6798b5534968b7389881536155834000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edufixing nightly warning 2018-09-05 09:57:14 -0400082b9bfa0ce99be202f1c6798b5534968b738988fixing nightly warningedittest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_OjedaMMS_toy.cppedittest/unit/ErrorEstimate/ErrorEstimateCell_Galerkin_AD_btest.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_Euler_CubicSource_toy.cppedittest/sandbox/Solve3D_CGStabilized_RANSSA_HemisphereCylinder_toy.cppedittest/sandbox/Solve2D_CGStabilized_Triangle_Euler_GaussianBump_toy.cppedittest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_FlatPlate_toy.cppedittest/system/LocalSolve/EdgeLocalSolve1D_Dual_Galerkin_Stabilized_Line_AD_btest.cppedittest/system/Asymptotic/ErrorEstimateOrder_2D_CG_Triangle_RD_btest.cppedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AR_btest.cppedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_Euler_btest.cppedittest/system/LocalSolve/EdgeLocalSolve2D_Primal_Galerkin_Stabilized_Triangle_AD_btest.cppedittest/sandbox/ErrorOrder_1D_CGStab_AD_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppeditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized.heditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Output_Stabilized.hedittest/sandbox/Adapt1D_Galerkin_Stabilized_AD_BoundaryLayer_toy.cppedittest/sandbox/ErrorOrder_2D_CGStabilizedLifted_Triangle_AD_toy.cppedittest/sandbox/Adapt1D_Galerkin_Stabilized_AR_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_BackwardsStep_toy.cppedittest/system/Adaptation/SolverInterface_Galerkin_Stabilized_btest.cppedittest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_Joukowski_toy.cppedittest/unit/ErrorEstimate/ErrorEstimateNodal_Galerkin_AD_btest.cppedittest/system/LocalSolve/EdgeLocalSolve3D_Dual_Galerkin_Stabilized_AD_btest.cppedittest/unit/ErrorEstimate/ErrorEstimateCell_PrimalStrongForm_Galerkin_AD_btest.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cppedittest/sandbox/Solve2D_CGStabilized_Triangle_RANSSA_Joukowski_toy.cppedittest/system/Asymptotic/ErrorEstimateOrder_2D_CG_Triangle_AD_btest.cppedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cppeditsrc/Discretization/Galerkin/Stabilization_Galerkin.hedittest/sandbox/Adapt2D_Galerkin_Stabilized_AR_toy.cppedittest/sandbox/Solve3D_CGStabilized_RANSSA_CRM_Sub_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_Helmholtz_toy.cppedittest/system/Asymptotic/ErrorEstimateOrder_1D_CG_Line_AD_btest.cppedittest/sandbox/ErrorOrder_2D_CGStabilized_Triangle_AD_toy.cppedittest/system/Asymptotic/ErrorOrder_2D_CGStabilized_RANS_MMS_btest.cppedittest/unit/ErrorEstimate/ErrorEstimate_Galerkin_AD_btest.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_Poisson_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_L2_CornerSingularity_toy.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppsrc/pde/IBL/SetIBLtransitionFrontCellGroup.h85093a4294a59d728fb5ca8c594f464cf0b0297c1536161698000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded a class that computes the natural transition location by looping over cells 2018-09-05 11:34:58 -040085093a4294a59d728fb5ca8c594f464cf0b0297cAdded a class that computes the natural transition location by looping over cellsaddsrc/pde/IBL/SetIBLtransitionFrontCellGroup.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_iter_TurbWake_btest.cppsrc/pde/IBL/SetIBLtransitionFrontCellGroup.h840619aaa209808f10b77c39ada5b7232f116c5c1536168577000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduStarted a new test case to examine iterative forced transition solution 2018-09-05 13:29:37 -0400840619aaa209808f10b77c39ada5b7232f116c5cStarted a new test case to examine iterative forced transition solutionedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppaddtest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_iter_TurbWake_btest.cppeditsrc/pde/IBL/SetIBLtransitionFrontCellGroup.htest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.hsrc/Field/tools/for_each_GhostBoundaryTraceGroup.hsrc/Field/XField_EdgeLocal_impl.h3a7f4c1ecd15ac38ff277ac86a84126fd60004631536169961000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educhanged the essential bc application to use ghost boundaries. No longer need to know the neighbourhood at the AlgEqSet level, and other patches should work straight out the box 2018-09-05 13:52:41 -04003a7f4c1ecd15ac38ff277ac86a84126fd6000463changed the essential bc application to use ghost boundaries. No longer need to know the neighbourhood at the AlgEqSet level, and other patches should work straight out the boxedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppeditsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.heditsrc/Field/XField_EdgeLocal_impl.haddsrc/Field/tools/for_each_GhostBoundaryTraceGroup.hsrc/Discretization/DG/IntegrandBoundaryTrace_Output_DGBR2.h18fe03eb249d8ec47be3c03fc80c720d38c13dbe1536177537000https://acdl.mit.edu/csi/user/ursachiursachiursachi@mit.eduFix for DGBR2 boundary output functionals 2018-09-05 15:58:57 -040018fe03eb249d8ec47be3c03fc80c720d38c13dbeFix for DGBR2 boundary output functionalseditsrc/Discretization/DG/IntegrandBoundaryTrace_Output_DGBR2.hsrc/pde/NS/BCRANSSA2D.hsrc/pde/NS/BCEulermitAVDiffusion2D.hsrc/pde/NS/BCEuler2D.hsrc/pde/NS/BCNavierStokes2D.h210bd7d3095dfcc0b1f25626420fc38d95af927c1536177606000https://acdl.mit.edu/csi/user/ursachiursachiursachi@mit.eduBCEuler has vector size greater than 20 2018-09-05 16:00:06 -0400210bd7d3095dfcc0b1f25626420fc38d95af927cBCEuler has vector size greater than 20editsrc/pde/NS/BCRANSSA2D.heditsrc/pde/NS/BCEulermitAVDiffusion2D.heditsrc/pde/NS/BCEuler2D.heditsrc/pde/NS/BCNavierStokes2D.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_iter_TurbWake_btest.cppsrc/pde/IBL/SetIBLtransitionFrontCellGroup.h6677f6329a77d528c92568045e695e020a2d3ceb1536177673000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduIterative forced transition solution works quite well for the two cases tried 2018-09-05 16:01:13 -04006677f6329a77d528c92568045e695e020a2d3cebIterative forced transition solution works quite well for the two cases triededittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_iter_TurbWake_btest.cppeditsrc/pde/IBL/SetIBLtransitionFrontCellGroup.htest/system/IO/ErrorEstimates/ErrorEst_2D_DGAdvective_AD_FullTest.txttest/system/Asymptotic/ErrorEstimateOrder_2D_DGAdvective_Triangle_AD_btest.cpptest/system/IO/ErrorEstimates/ErrorEst_2D_DGAdvective_AD_MinTest.txt0953d1858966755c4a113c62594f8ef3259e35191536177861000https://acdl.mit.edu/csi/user/ursachiursachiursachi@mit.edu2D DGAdvective error estimate order test 2018-09-05 16:04:21 -04000953d1858966755c4a113c62594f8ef3259e35192D DGAdvective error estimate order testaddtest/system/IO/ErrorEstimates/ErrorEst_2D_DGAdvective_AD_FullTest.txtaddtest/system/Asymptotic/ErrorEstimateOrder_2D_DGAdvective_Triangle_AD_btest.cppaddtest/system/IO/ErrorEstimates/ErrorEst_2D_DGAdvective_AD_MinTest.txttest/unit/Discretization/Galerkin/FunctionalBoundaryTrace_Dispatch_Galerkin_AD_btest.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppsrc/Discretization/Galerkin/IntegrandBoundaryTrace_Flux_mitState_Nitsche.htest/unit/Discretization/Galerkin/IntegrandBoundaryTrace_Flux_mitState_Nitsche_AD_btest.cpp3cd799b6fb790a7b99164fdd2b48c597e62c4be11536249381000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduChanged Nitche to Cb = 2.0 for AD CG P3 adaptation 2018-09-06 11:56:21 -04003cd799b6fb790a7b99164fdd2b48c597e62c4be1Changed Nitche to Cb = 2.0 for AD CG P3 adaptationeditsrc/Discretization/Galerkin/IntegrandBoundaryTrace_Flux_mitState_Nitsche.hedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppedittest/unit/Discretization/Galerkin/IntegrandBoundaryTrace_Flux_mitState_Nitsche_AD_btest.cppedittest/unit/Discretization/Galerkin/FunctionalBoundaryTrace_Dispatch_Galerkin_AD_btest.cpptest/unit/UnitGrids/XField2D_GilesPierceNozzle_HACK.cppscripts/vera/exclusions.txttest/sandbox/Adapt1D_DGBR2_Line_Euler_GilesPierce_toy.cpp8d9f574d953cbda92eb142a27ce1ee3ce63d54271536253744000https://acdl.mit.edu/csi/user/ursachiursachiursachi@mit.eduFixing errors 2018-09-06 13:09:04 -04008d9f574d953cbda92eb142a27ce1ee3ce63d5427Fixing errorsedittest/unit/UnitGrids/XField2D_GilesPierceNozzle_HACK.cppedittest/sandbox/Adapt1D_DGBR2_Line_Euler_GilesPierce_toy.cppeditscripts/vera/exclusions.txtsrc/Adaptation/MOESS/ErrorModel.cpptest/unit/Field/Field2D_EdgeLocal_Dual_CG_btest.cpptest/system/LocalSolve/EdgeLocalSolve3D_Dual_Galerkin_Stabilized_AD_btest.cpptest/unit/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_Triangle_Euler_btest.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cpptest/unit/Field/Field1D_EdgeLocal_Dual_CG_btest.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AR_btest.cpptest/unit/Field/XField3D_EdgeLocal_Dual_Split_btest.cpptest/unit/Field/XField2D_EdgeLocal_Dual_btest.cpptest/unit/Field/Field2D_EdgeLocal_Primal_CG_btest.cppsrc/Discretization/Galerkin/IntegrandBoundaryTrace_Flux_mitState_Nitsche.hsrc/Field/XField_Local_Neighborhoods.htest/system/LocalSolve/EdgeLocalSolve1D_Dual_Galerkin_Stabilized_Line_AD_btest.cppsrc/Field/XFieldArea_EdgeLocal.cppsrc/Field/XFieldVolume_EdgeLocal.cpptest/unit/Field/XField1D_EdgeLocal_Dual_btest.cpptest/unit/Field/XField2D_EdgeLocal_Dual_Split_btest.cppsrc/Field/XFieldLine_EdgeLocal.cppsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.htest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/unit/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_Triangle_AD_btest.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_Euler_btest.cppsrc/Field/XField_EdgeLocal_impl.htest/unit/Field/Field2D_EdgeLocal_PrimalNeighbors_CG_btest.cpptest/unit/Field/XField3D_EdgeLocal_Dual_btest.cppsrc/Discretization/Galerkin/Stabilization_Galerkin.h7a4984e2d2a9a17212b82788c425197eaf973a4f1536269875000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educhanged Dual to Dual2 in anticipation of the new local solve 2018-09-06 17:37:55 -04007a4984e2d2a9a17212b82788c425197eaf973a4fchanged Dual to Dual2 in anticipation of the new local solveeditsrc/Field/XField_Local_Neighborhoods.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.heditsrc/Field/XFieldVolume_EdgeLocal.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppeditsrc/Discretization/Galerkin/Stabilization_Galerkin.heditsrc/Field/XFieldLine_EdgeLocal.cppedittest/unit/Field/Field1D_EdgeLocal_Dual_CG_btest.cppedittest/unit/Field/Field2D_EdgeLocal_Primal_CG_btest.cppedittest/unit/Field/XField1D_EdgeLocal_Dual_btest.cppeditsrc/Adaptation/MOESS/ErrorModel.cppedittest/unit/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_Triangle_AD_btest.cppedittest/unit/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_Triangle_Euler_btest.cppeditsrc/Field/XFieldArea_EdgeLocal.cppedittest/system/LocalSolve/EdgeLocalSolve3D_Dual_Galerkin_Stabilized_AD_btest.cppedittest/unit/Field/XField2D_EdgeLocal_Dual_Split_btest.cppedittest/unit/Field/Field2D_EdgeLocal_Dual_CG_btest.cppedittest/system/LocalSolve/EdgeLocalSolve1D_Dual_Galerkin_Stabilized_Line_AD_btest.cppedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_Euler_btest.cppeditsrc/Discretization/Galerkin/IntegrandBoundaryTrace_Flux_mitState_Nitsche.hedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cppedittest/unit/Field/XField2D_EdgeLocal_Dual_btest.cppedittest/unit/Field/XField3D_EdgeLocal_Dual_Split_btest.cppeditsrc/Field/XField_EdgeLocal_impl.hedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AR_btest.cppedittest/unit/Field/XField3D_EdgeLocal_Dual_btest.cppedittest/unit/Field/Field2D_EdgeLocal_PrimalNeighbors_CG_btest.cpptest/unit/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_Triangle_Euler_btest.cpptest/unit/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_Triangle_AD_btest.cpp4b4cbb49293c1beb0394d39a0c2ff7a1ce91bd0d1536325242000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduupdated unit tests to use the ghost boundary trace freezing rule 2018-09-07 09:00:42 -04004b4cbb49293c1beb0394d39a0c2ff7a1ce91bd0dupdated unit tests to use the ghost boundary trace freezing ruleedittest/unit/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_Triangle_Euler_btest.cppedittest/unit/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_Triangle_AD_btest.cppsrc/Field/XFieldLine_EdgeLocal.cppsrc/Field/XField_EdgeLocal.hsrc/Field/XFieldArea_EdgeLocal.cppsrc/Field/XFieldVolume_EdgeLocal.cppsrc/Field/XField_EdgeLocal_impl.h1edf58d4e3c486810358c412c45b82f3376df9741536326432000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edupreparations for the alternative constructor 2018-09-07 09:20:32 -04001edf58d4e3c486810358c412c45b82f3376df974preparations for the alternative constructoreditsrc/Field/XFieldVolume_EdgeLocal.cppeditsrc/Field/XField_EdgeLocal.heditsrc/Field/XFieldArea_EdgeLocal.cppeditsrc/Field/XField_EdgeLocal_impl.heditsrc/Field/XFieldLine_EdgeLocal.cppsrc/Adaptation/MOESS/NLOPT/MOESS_Metric_Optimizer_NLOPT.hsrc/Adaptation/MOESS/NLOPT/MOESS_Metric_Optimizer_NLOPT.cpptest/sandbox/Adapt2D_Mesh_Optimizer_toy.cppsrc/Adaptation/MOESS/MetricError.hsrc/Adaptation/MeshAdapter.cpptest/unit/Adaptation/MOESS/ImpliedMetric_Optimizer_NLOPT_btest.cppsrc/Meshing/avro/MesherInterface_avro.cppsrc/Adaptation/MOESS/MOESS.cpptest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppsrc/Adaptation/MOESS/MetricError.cppsrc/Adaptation/MOESS/SolverInterface_MetricError.hsrc/Adaptation/CMakeLists.txtf2c1eedba2df4f32c365d492d14d4222e19f868b1536342922000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.educleanup of implied metric limiter 2018-09-07 13:55:22 -0400f2c1eedba2df4f32c365d492d14d4222e19f868bcleanup of implied metric limiterdeletesrc/Adaptation/MOESS/SolverInterface_MetricError.hdeletesrc/Adaptation/MOESS/MetricError.cppdeletesrc/Adaptation/MOESS/MetricError.haddtest/sandbox/Adapt2D_Mesh_Optimizer_toy.cppeditsrc/Meshing/avro/MesherInterface_avro.cppeditsrc/Adaptation/CMakeLists.txtdeletesrc/Adaptation/MOESS/NLOPT/MOESS_Metric_Optimizer_NLOPT.heditsrc/Adaptation/MeshAdapter.cppdeletesrc/Adaptation/MOESS/NLOPT/MOESS_Metric_Optimizer_NLOPT.cppedittest/unit/Adaptation/MOESS/ImpliedMetric_Optimizer_NLOPT_btest.cppeditsrc/Adaptation/MOESS/MOESS.cppaddtest/sandbox/Adapt3D_Mesh_Optimizer_toy.cpptest/sandbox/Adapt2D_Mesh_Optimizer_toy.cpptest/sandbox/Adapt3D_Mesh_Optimizer_toy.cpp55a7ebb90f8472f6e634aba737de988e1a8bc1a21536343290000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduvera fixes 2018-09-07 14:01:30 -040055a7ebb90f8472f6e634aba737de988e1a8bc1a2vera fixesedittest/sandbox/Adapt2D_Mesh_Optimizer_toy.cppedittest/sandbox/Adapt3D_Mesh_Optimizer_toy.cpptest/unit/UnitGrids/XField2D_GilesPierceNozzle_HACK.cpptest/sandbox/Adapt2D_DGBR2_Euler_GilesPierce_AV_toy.cpptest/unit/UnitGrids/XField2D_GilesPierceNozzle_HACK_btest.cpp4dcad5109d10ea3c6f35f82b6541ba71cd0ba3b31536343842000https://acdl.mit.edu/csi/user/ursachiursachiursachi@mit.eduFixing errors 2018-09-07 14:10:42 -04004dcad5109d10ea3c6f35f82b6541ba71cd0ba3b3Fixing errorsedittest/unit/UnitGrids/XField2D_GilesPierceNozzle_HACK_btest.cppedittest/sandbox/Adapt2D_DGBR2_Euler_GilesPierce_AV_toy.cppedittest/unit/UnitGrids/XField2D_GilesPierceNozzle_HACK.cpptest/unit/Adaptation/MOESS/ImpliedMetric_Optimizer_NLOPT_btest.cpp005b01fb90c929d36b911a75f15411e69686cc451536347395000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edudidn't mean to include a certain test 2018-09-07 15:09:55 -0400005b01fb90c929d36b911a75f15411e69686cc45didn't mean to include a certain testedittest/unit/Adaptation/MOESS/ImpliedMetric_Optimizer_NLOPT_btest.cppsrc/Field/XField_Local_Neighborhoods.htest/system/LocalSolve/EdgeLocalSolve1D_Dual_Galerkin_Stabilized_Line_AD_btest.cppsrc/Adaptation/MOESS/ErrorModel.cpptest/unit/ErrorEstimate/AWResidualInteriorTrace_HDG_AD_btest_OFF.cpptest/unit/Field/Field2D_EdgeLocal_Dual_CG_btest.cpptest/system/LocalSolve/EdgeLocalSolve3D_Dual_Galerkin_Stabilized_AD_btest.cpptest/unit/Field/XField1D_EdgeLocal_Dual_btest.cpptest/unit/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_Triangle_Euler_btest.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cpptest/unit/Field/Field1D_EdgeLocal_Dual_CG_btest.cpptest/unit/Field/XField2D_EdgeLocal_Dual_Split_btest.cpptest/sandbox/deformationTime.dattest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AR_btest.cpptest/unit/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_Triangle_AD_btest.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_Euler_btest.cpptest/unit/Field/Field2D_EdgeLocal_PrimalNeighbors_CG_btest.cpptest/unit/Field/XField3D_EdgeLocal_Dual_Split_btest.cpptest/unit/Field/XField3D_EdgeLocal_Dual_btest.cpptest/unit/Field/XField2D_EdgeLocal_Dual_btest.cpptest/unit/Field/Field2D_EdgeLocal_Primal_CG_btest.cpptest/unit/Discretization/DG/ResidualCell_DGAdvective_Euler2D_btest.cppd90c49fef64db7f2c791e1d56f06692d0a6624211536352658000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduswitching back to Dual notation, splitting the EdgeLocal and ElementLocal in future 2018-09-07 16:37:38 -0400d90c49fef64db7f2c791e1d56f06692d0a662421switching back to Dual notation, splitting the EdgeLocal and ElementLocal in futureedittest/unit/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_Triangle_AD_btest.cppeditsrc/Adaptation/MOESS/ErrorModel.cppedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AR_btest.cppedittest/unit/Field/XField1D_EdgeLocal_Dual_btest.cppedittest/system/LocalSolve/EdgeLocalSolve1D_Dual_Galerkin_Stabilized_Line_AD_btest.cppeditsrc/Field/XField_Local_Neighborhoods.hedittest/unit/Field/Field1D_EdgeLocal_Dual_CG_btest.cppedittest/unit/Field/XField3D_EdgeLocal_Dual_btest.cppedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_Euler_btest.cppedittest/system/LocalSolve/EdgeLocalSolve3D_Dual_Galerkin_Stabilized_AD_btest.cppedittest/unit/Field/Field2D_EdgeLocal_Primal_CG_btest.cppedittest/unit/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_Triangle_Euler_btest.cppedittest/unit/Field/Field2D_EdgeLocal_Dual_CG_btest.cppedittest/unit/Discretization/DG/ResidualCell_DGAdvective_Euler2D_btest.cppedittest/unit/Field/XField2D_EdgeLocal_Dual_Split_btest.cppedittest/unit/Field/Field2D_EdgeLocal_PrimalNeighbors_CG_btest.cppaddtest/sandbox/deformationTime.datedittest/unit/Field/XField3D_EdgeLocal_Dual_Split_btest.cppedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cppedittest/unit/Field/XField2D_EdgeLocal_Dual_btest.cppedittest/unit/ErrorEstimate/AWResidualInteriorTrace_HDG_AD_btest_OFF.cppsrc/Field/XFieldLine_EdgeLocal.cppsrc/Field/XField_EdgeLocal.hsrc/Field/XFieldArea_EdgeLocal.cppsrc/Field/XFieldVolume_EdgeLocal.cppsrc/Field/XField_EdgeLocal_impl.h7ee031b6d827deeaff961fd19c38d4d7c7ca620b1536352743000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumoved to ptrs in the base class, dry run for elemental version 2018-09-07 16:39:03 -04007ee031b6d827deeaff961fd19c38d4d7c7ca620bmoved to ptrs in the base class, dry run for elemental versioneditsrc/Field/XFieldArea_EdgeLocal.cppeditsrc/Field/XField_EdgeLocal.heditsrc/Field/XFieldVolume_EdgeLocal.cppeditsrc/Field/XFieldLine_EdgeLocal.cppeditsrc/Field/XField_EdgeLocal_impl.hCMakeInclude/Finds/FindAVRO.cmakesrc/Topology/ElementTopology.cppCMakeInclude/Dependencies.cmake216beb68f0d9f68e462746758a5a99a10855a8e41536405372000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduTopology instantiations and avro cmake updates 2018-09-08 07:16:12 -0400216beb68f0d9f68e462746758a5a99a10855a8e4Topology instantiations and avro cmake updateseditCMakeInclude/Finds/FindAVRO.cmakeeditsrc/Topology/ElementTopology.cppeditCMakeInclude/Dependencies.cmaketest/sandbox/Adapt2D_DGBR2_Euler_GilesPierce_AV_toy.cppa0ec0f85b222a880408603c30b7f6cc4134105f21536587527000https://acdl.mit.edu/csi/user/ursachiursachiursachi@mit.eduDummy push 2018-09-10 09:52:07 -0400a0ec0f85b222a880408603c30b7f6cc4134105f2Dummy pushedittest/sandbox/Adapt2D_DGBR2_Euler_GilesPierce_AV_toy.cppsrc/Adaptation/MOESS/NodalMetrics.cppCMakeInclude/Dependencies.cmakec81e40cdd4d28161508f6a314eff8c07c1d882451536589365000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed AVRO cmake typo. Minor format cleanup for limited metric. 2018-09-10 10:22:45 -0400c81e40cdd4d28161508f6a314eff8c07c1d88245Fixed AVRO cmake typo. Minor format cleanup for limited metric.editsrc/Adaptation/MOESS/NodalMetrics.cppeditCMakeInclude/Dependencies.cmakesrc/Field/XFieldLine_EdgeLocal.cppsrc/Field/XField_EdgeLocal.hsrc/Field/XFieldArea_EdgeLocal.cppsrc/Field/XFieldVolume_EdgeLocal.cppsrc/Field/XField_EdgeLocal_impl.he9a445d89f8814f404a97a025a92d0ce0a3a08bb1536595716000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edurefactor to move most member variables into the base class XField_Common 2018-09-10 12:08:36 -0400e9a445d89f8814f404a97a025a92d0ce0a3a08bbrefactor to move most member variables into the base class XField_Commoneditsrc/Field/XFieldArea_EdgeLocal.cppeditsrc/Field/XFieldLine_EdgeLocal.cppeditsrc/Field/XFieldVolume_EdgeLocal.cppeditsrc/Field/XField_EdgeLocal.heditsrc/Field/XField_EdgeLocal_impl.hsrc/Field/XFieldLine_EdgeLocal.cppsrc/Field/XField_EdgeLocal.hsrc/Field/XFieldArea_EdgeLocal.cppsrc/Field/XField_Local_Common.hsrc/Field/XFieldVolume_EdgeLocal.cppsrc/Field/XField_EdgeLocal_impl.h2b50068ea178c9b5f4850d04197de95edc0fef5a1536604904000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduForgot a file, and all non edge specific methods are now buried in the base class XField_Local_Common 2018-09-10 14:41:44 -04002b50068ea178c9b5f4850d04197de95edc0fef5aForgot a file, and all non edge specific methods are now buried in the base class XField_Local_Commoneditsrc/Field/XFieldArea_EdgeLocal.cppeditsrc/Field/XField_EdgeLocal_impl.haddsrc/Field/XField_Local_Common.heditsrc/Field/XFieldVolume_EdgeLocal.cppeditsrc/Field/XField_EdgeLocal.heditsrc/Field/XFieldLine_EdgeLocal.cppsrc/Field/XField_ElementLocal.hsrc/Field/XFieldLine_EdgeLocal.cppsrc/Field/XFieldArea_EdgeLocal.cpptest/unit/Field/XField2D_ElementLocal_Dual_btest.cppsrc/Field/XFieldVolume_EdgeLocal.cppsrc/Field/CMakeLists.txtsrc/Field/XField_Local_Common.hsrc/Field/XFieldArea_ElementLocal.cppsrc/Field/XField_ElementLocal_impl.hce0cd1b6990284ed09c6abf0d2e6771cb46cbaeb1536613445000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educhanged a template setup and added a first Element Local test 2018-09-10 17:04:05 -0400ce0cd1b6990284ed09c6abf0d2e6771cb46cbaebchanged a template setup and added a first Element Local testaddsrc/Field/XFieldArea_ElementLocal.cppaddsrc/Field/XField_ElementLocal_impl.heditsrc/Field/XFieldArea_EdgeLocal.cppeditsrc/Field/XFieldVolume_EdgeLocal.cppaddsrc/Field/XField_ElementLocal.heditsrc/Field/XField_Local_Common.haddtest/unit/Field/XField2D_ElementLocal_Dual_btest.cppeditsrc/Field/XFieldLine_EdgeLocal.cppeditsrc/Field/CMakeLists.txtsrc/Meshing/EGTess/EGTessModel_aflr4.cppCMakeInclude/Finds/FindAFLR.cmakesrc/UserInterfaces/LIPSolver.cppf2a8ec441297c4adbad228c0460ac6f72f5f4b7f1536629921000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduStarting work on AFLR 16.26.2 2018-09-10 21:38:41 -0400f2a8ec441297c4adbad228c0460ac6f72f5f4b7fStarting work on AFLR 16.26.2editsrc/UserInterfaces/LIPSolver.cppeditCMakeInclude/Finds/FindAFLR.cmakeeditsrc/Meshing/EGTess/EGTessModel_aflr4.cppsrc/Field/XField_ElementLocal.hsrc/Field/XFieldArea_ElementLocal.cppce6dbacb071e69565277af073364ac45a3da6dde1536684672000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edunew splitting routine compiles 2018-09-11 12:51:12 -0400ce6dbacb071e69565277af073364ac45a3da6ddenew splitting routine compileseditsrc/Field/XField_ElementLocal.heditsrc/Field/XFieldArea_ElementLocal.cppsrc/Field/XField_Local_Common_Instantiate_2D.cppsrc/Field/XField_ElementLocal.hsrc/Field/XField_EdgeLocal.hsrc/Field/XFieldArea_EdgeLocal.cppsrc/Field/XField_Local_Common.h7072374e3af01756b90aaa7038dfeb8c09558e531536704644000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumoved the split function up to Common level, made it more sophisticated to handle edge and element grids at the same time 2018-09-11 18:24:04 -04007072374e3af01756b90aaa7038dfeb8c09558e53moved the split function up to Common level, made it more sophisticated to handle edge and element grids at the same timeeditsrc/Field/XFieldArea_EdgeLocal.cppaddsrc/Field/XField_Local_Common_Instantiate_2D.cppeditsrc/Field/XField_ElementLocal.heditsrc/Field/XField_EdgeLocal.heditsrc/Field/XField_Local_Common.hsrc/Field/XField_Local_Common_Instantiate_2D.cppsrc/Field/CMakeLists.txtsrc/Field/XFieldLine_EdgeLocal.cppsrc/Adaptation/MOESS/ErrorModel.cppsrc/Field/XFieldVolume_EdgeLocal.cpptest/unit/Field/XField3D_EdgeLocal_Dual_Split_btest.cpp3748c314603b8c55dde49edc365802dc606e60051536708454000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduExpanded the 3D split and changed the arguments for the 1D split to match the 2D. Field passing again 2018-09-11 19:27:34 -04003748c314603b8c55dde49edc365802dc606e6005Expanded the 3D split and changed the arguments for the 1D split to match the 2D. Field passing againeditsrc/Field/XFieldVolume_EdgeLocal.cppeditsrc/Field/XField_Local_Common_Instantiate_2D.cppeditsrc/Field/CMakeLists.txteditsrc/Field/XFieldLine_EdgeLocal.cppeditsrc/Adaptation/MOESS/ErrorModel.cppedittest/unit/Field/XField3D_EdgeLocal_Dual_Split_btest.cpptest/unit/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_Triangle_AD_btest.cpp509dd058ef344f6de7c7f9d52c29a3fbf517a9071536708549000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduforgot you can't write to tmp/ 2018-09-11 19:29:09 -0400509dd058ef344f6de7c7f9d52c29a3fbf517a907forgot you can't write to tmp/edittest/unit/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_Triangle_AD_btest.cppsrc/Adaptation/MOESS/ErrorModel.cppdd7b7e772666ae09320a0aa97e4a3b799f819a801536708933000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edufind and replace bug 2018-09-11 19:35:33 -0400dd7b7e772666ae09320a0aa97e4a3b799f819a80find and replace bugeditsrc/Adaptation/MOESS/ErrorModel.cppsrc/Discretization/HDG/ProjectSoln_HDG.hsrc/Field/tools/for_each_InteriorFieldTraceGroup.hsrc/Field/Field_impl.hsrc/Field/tools/for_each_InteriorFIeldTraceGroup.hfe13ebe3b26e61a59b4877648a48688e8788041f1536709391000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edutypo in file name 2018-09-11 19:43:11 -0400fe13ebe3b26e61a59b4877648a48688e8788041ftypo in file nameeditsrc/Field/Field_impl.hdeletesrc/Field/tools/for_each_InteriorFIeldTraceGroup.haddsrc/Field/tools/for_each_InteriorFieldTraceGroup.heditsrc/Discretization/HDG/ProjectSoln_HDG.htest/unit/Optimization/Problems/Truss/LengthObjective_Truss_btest.cpptest/sandbox/Solve2D_HDG_Triangle_NavierStokes_OjedaMMS_toy.cpptest/sandbox/Solve2D_HDG_Triangle_NavierStokes_Joukowski_toy.cpptest/unit/Optimization/Problems/Truss/TrussOptimization_wo_adapt_btest.cpptest/unit/Optimization/Problems/Truss/JacobianConstraint_Truss_btest.cpptest/sandbox/Solve1D_HDG_Line_Euler_Sod_toy_LGOFF.cpptest/sandbox/Solve2D_EDG_Triangle_NavierStokes_OjedaMMS_toy_LGOFF.cpptest/sandbox/Solve2D_HDG_Line_Euler_Sod_ST_toy.cpptest/sandbox/Solve2D_HDG_Triangle_NavierStokes_FlatPlate_toy.cpp56fe90b0e7f3edc77d2e248e72b5d1d118d4b2d61536756199000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduforgot test directory 2018-09-12 08:43:19 -040056fe90b0e7f3edc77d2e248e72b5d1d118d4b2d6forgot test directoryedittest/sandbox/Solve2D_EDG_Triangle_NavierStokes_OjedaMMS_toy_LGOFF.cppedittest/sandbox/Solve2D_HDG_Triangle_NavierStokes_OjedaMMS_toy.cppedittest/unit/Optimization/Problems/Truss/JacobianConstraint_Truss_btest.cppedittest/unit/Optimization/Problems/Truss/LengthObjective_Truss_btest.cppedittest/sandbox/Solve1D_HDG_Line_Euler_Sod_toy_LGOFF.cppedittest/sandbox/Solve2D_HDG_Triangle_NavierStokes_FlatPlate_toy.cppedittest/sandbox/Solve2D_HDG_Line_Euler_Sod_ST_toy.cppedittest/sandbox/Solve2D_HDG_Triangle_NavierStokes_Joukowski_toy.cppedittest/unit/Optimization/Problems/Truss/TrussOptimization_wo_adapt_btest.cppsrc/Field/XField_Local_Common_Instantiate_2D.cpptest/unit/Field/XField2D_ElementLocal_Dual_btest.cpp5696a1a470128cc8f73cd5ac9f62278ef4d9bd1c1536757829000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educommented out some impossible branches in 2D, and added another unsplit test 2018-09-12 09:10:29 -04005696a1a470128cc8f73cd5ac9f62278ef4d9bd1ccommented out some impossible branches in 2D, and added another unsplit testeditsrc/Field/XField_Local_Common_Instantiate_2D.cppedittest/unit/Field/XField2D_ElementLocal_Dual_btest.cpptest/unit/Field/XField2D_ElementLocal_Dual_btest.cppeddea53dcfe5a91b5eb96809e8c8ef3cf17f92951536763458000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduunit tests 2018-09-12 10:44:18 -0400eddea53dcfe5a91b5eb96809e8c8ef3cf17f9295unit testsedittest/unit/Field/XField2D_ElementLocal_Dual_btest.cppsrc/Field/XFieldArea_ElementLocal.cppsrc/Field/XFieldArea_EdgeLocal.cpp5846d17da75b751bc58b7b42223afe294442fc1b1536763974000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduElementArea now calls the same actual split method as edge local 2018-09-12 10:52:54 -04005846d17da75b751bc58b7b42223afe294442fc1bElementArea now calls the same actual split method as edge localeditsrc/Field/XFieldArea_EdgeLocal.cppeditsrc/Field/XFieldArea_ElementLocal.cppsrc/Field/XField_ElementLocal.hsrc/Field/XField_EdgeLocal.htest/unit/Field/XField2D_ElementLocal_Dual_btest.cppsrc/Field/XField_EdgeLocal_impl.hsrc/Field/XField_Local_Common.hsrc/Field/XFieldArea_ElementLocal.cppsrc/Field/XField_ElementLocal_impl.hdac2ac8a2c563da40c145eed4c87202e1b3f3d6a1536767429000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduadded a copy constructor test, working on testing splits for Element Local 2018-09-12 11:50:29 -0400dac2ac8a2c563da40c145eed4c87202e1b3f3d6aadded a copy constructor test, working on testing splits for Element Localeditsrc/Field/XField_ElementLocal.heditsrc/Field/XField_EdgeLocal_impl.heditsrc/Field/XFieldArea_ElementLocal.cppedittest/unit/Field/XField2D_ElementLocal_Dual_btest.cppeditsrc/Field/XField_EdgeLocal.heditsrc/Field/XField_ElementLocal_impl.heditsrc/Field/XField_Local_Common.htest/unit/Field/XField2D_ElementLocal_Dual_Split_btest.cppsrc/Field/XFieldArea_ElementLocal.cppb53130eed67ff170631ae5a5d2e4532205c5376b1536767715000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edua very first element local split test 2018-09-12 11:55:15 -0400b53130eed67ff170631ae5a5d2e4532205c5376ba very first element local split testaddtest/unit/Field/XField2D_ElementLocal_Dual_Split_btest.cppeditsrc/Field/XFieldArea_ElementLocal.cppsrc/Field/XField_Local_Common_Instantiate_2D.cpp9dd316292b95041c2fa2c3dce37f1454082d4aea1536768430000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumoved some memory outside of loops so it doesn't get created and destroyed so often 2018-09-12 12:07:10 -04009dd316292b95041c2fa2c3dce37f1454082d4aeamoved some memory outside of loops so it doesn't get created and destroyed so ofteneditsrc/Field/XField_Local_Common_Instantiate_2D.cppsrc/Field/XField_Local_Common_Instantiate_2D.cpptest/unit/Field/XField2D_ElementLocal_Dual_btest.cpptest/unit/Field/XField2D_ElementLocal_Dual_Split_btest.cppsrc/Field/XFieldArea_ElementLocal.cppab129c8ef7e4aadc262310055e96100da9d9bca11536773544000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduunit tests for adding in new cellgroup 1 elements and traces, looks like everything works 2018-09-12 13:32:24 -0400ab129c8ef7e4aadc262310055e96100da9d9bca1unit tests for adding in new cellgroup 1 elements and traces, looks like everything workseditsrc/Field/XFieldArea_ElementLocal.cppedittest/unit/Field/XField2D_ElementLocal_Dual_Split_btest.cppedittest/unit/Field/XField2D_ElementLocal_Dual_btest.cppeditsrc/Field/XField_Local_Common_Instantiate_2D.cpptest/unit/Field/XField2D_ElementLocal_Dual_Split_btest.cpptest/unit/Field/XField2D_ElementLocal_Dual_btest.cppaefeda0ed6968e5e00c58aa01fa67f696aa963cd1536775251000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduunit test involving reattaching a cell group 1 boundary element 2018-09-12 14:00:51 -0400aefeda0ed6968e5e00c58aa01fa67f696aa963cdunit test involving reattaching a cell group 1 boundary elementedittest/unit/Field/XField2D_ElementLocal_Dual_Split_btest.cppedittest/unit/Field/XField2D_ElementLocal_Dual_btest.cppsrc/pde/NS/SolutionFunction_Euler2D.hsrc/pde/NS/SolutionFunction_Euler2D.cpptest/sandbox/Solve2D_DGBR2_Euler_Riemann_AV_RK_toy.cppbac16609edc6055c2b268265cc66116f58f8950e1536781509000https://acdl.mit.edu/csi/user/eam5515eam5515eam5515@psu.eduAdding RK Riemann Problem 2018-09-12 15:45:09 -0400bac16609edc6055c2b268265cc66116f58f8950eAdding RK Riemann Problemeditsrc/pde/NS/SolutionFunction_Euler2D.cppeditsrc/pde/NS/SolutionFunction_Euler2D.haddtest/sandbox/Solve2D_DGBR2_Euler_Riemann_AV_RK_toy.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_iter_TurbWake_btest.cppsrc/pde/IBL/SetIBLtransitionFrontCellGroup.hsrc/pde/IBL/SetTransitionFrontIBL2D_InteriorTraceGroup.h97eeeadfc1cc54140005867a3fd1945320eec0c41536789416000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded detection for transition front that occurs at element interfaces. 2018-09-12 17:56:56 -040097eeeadfc1cc54140005867a3fd1945320eec0c4Added detection for transition front that occurs at element interfaces.editsrc/pde/IBL/SetIBLtransitionFrontCellGroup.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_iter_TurbWake_btest.cppaddsrc/pde/IBL/SetTransitionFrontIBL2D_InteriorTraceGroup.htest/unit/UnitGrids/XField2D_Box_Triangle_Lagrange_X1_btest.cpptest/unit/pde/NS/PDERANSSA2D_btest.cpptest/unit/Field/Field2D_EdgeLocal_Dual_CG_btest.cppsrc/BasisFunction/BasisFunctionVolume_Tetrahedron_Hierarchical.cpptest/unit/pde/NS/PDENavierStokes2D_btest.cppsrc/Discretization/Galerkin/FunctionalBoundaryTrace_WeightedResidual_Galerkin.hsrc/Field/FieldVolume_CG_BoundaryTrace_Instantiate_3D.cpptest/unit/BasisFunction/basisFunctionHessian.nbtest/sandbox/deformationTime.datsrc/pde/NS/PDENavierStokes3D.htest/unit/pde/NS/PDENavierStokes3D_btest.cppsrc/pde/NS/PDENavierStokes2D.htest/unit/BasisFunction/BasisFunctionVolume_Tetrahedron_Hierarchical_btest.cppsrc/Field/output_Tecplot.cpptest/unit/Field/Field2D_EdgeLocal_PrimalNeighbors_CG_btest.cpptest/unit/Field/Field2D_EdgeLocal_Primal_CG_btest.cppsrc/Field/Field_CG_Topology.cpptest/unit/UnitGrids/XField3D_Box_Tet_X1_btest.cppc7052070ab4fc2543c7942f6998a952b882dea4b1536792000000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduVarious fixes to get NS GLS working in 3D 2018-09-12 18:40:00 -0400c7052070ab4fc2543c7942f6998a952b882dea4bVarious fixes to get NS GLS working in 3Deditsrc/Field/Field_CG_Topology.cppeditsrc/BasisFunction/BasisFunctionVolume_Tetrahedron_Hierarchical.cppedittest/unit/UnitGrids/XField3D_Box_Tet_X1_btest.cppedittest/unit/BasisFunction/BasisFunctionVolume_Tetrahedron_Hierarchical_btest.cppeditsrc/Field/FieldVolume_CG_BoundaryTrace_Instantiate_3D.cppedittest/unit/UnitGrids/XField2D_Box_Triangle_Lagrange_X1_btest.cppeditsrc/Discretization/Galerkin/FunctionalBoundaryTrace_WeightedResidual_Galerkin.heditsrc/pde/NS/PDENavierStokes3D.heditsrc/pde/NS/PDENavierStokes2D.hedittest/unit/BasisFunction/basisFunctionHessian.nbedittest/unit/Field/Field2D_EdgeLocal_Dual_CG_btest.cppedittest/unit/Field/Field2D_EdgeLocal_Primal_CG_btest.cppedittest/unit/pde/NS/PDENavierStokes3D_btest.cppedittest/unit/pde/NS/PDERANSSA2D_btest.cppedittest/unit/pde/NS/PDENavierStokes2D_btest.cppdeletetest/sandbox/deformationTime.dateditsrc/Field/output_Tecplot.cppedittest/unit/Field/Field2D_EdgeLocal_PrimalNeighbors_CG_btest.cpptest/system/IO/ErrorOrder/ErrorOrder_2D_CGStab_RANSSA_MMS2_FullTest.txttest/system/IO/ErrorOrder/ErrorOrder_2D_CGStab_RANSSA_MMS1_FullTest.txt10f7b3dbef3600b3b5661ea16390121917a295a81536841140000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdated pyrite files for nightly testing 2018-09-13 08:19:00 -040010f7b3dbef3600b3b5661ea16390121917a295a8Updated pyrite files for nightly testingedittest/system/IO/ErrorOrder/ErrorOrder_2D_CGStab_RANSSA_MMS2_FullTest.txtedittest/system/IO/ErrorOrder/ErrorOrder_2D_CGStab_RANSSA_MMS1_FullTest.txttest/unit/CMakeLists.txttest/unit/Field/Element/CMakeLists.txtb93eeaebc9ed50626010b1f32bc9d98ba0d2d7f51536844367000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduSet longer timeout for specific long running unit tests 2018-09-13 09:12:47 -0400b93eeaebc9ed50626010b1f32bc9d98ba0d2d7f5Set longer timeout for specific long running unit testsedittest/unit/CMakeLists.txtedittest/unit/Field/Element/CMakeLists.txtsrc/Field/XField_Local_Common_Instantiate_3D.cpptest/unit/Field/XField2D_ElementLocal_Dual_btest.cppsrc/Field/XFieldArea_EdgeLocal.cppsrc/Adaptation/MOESS/ErrorModel.cppsrc/Adaptation/MOESS/ErrorModel.hsrc/Field/XFieldVolume_EdgeLocal.cppsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized.htest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cppsrc/Field/XField_Local_Common.htest/unit/Field/XField2D_EdgeLocal_Dual_Split_btest.cppsrc/Field/XField_ElementLocal.hsrc/Field/XField_Local_Common_Instantiate_1D.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppsrc/Adaptation/MOESS/MOESSParams.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.htest/unit/Field/XField2D_EdgeLocal_Dual_btest.cppsrc/Field/XField_Local_Common_Instantiate_2D.cppsrc/Field/CMakeLists.txtsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin.hsrc/Discretization/DG/AlgebraicEquationSet_DGBR2_impl.hsrc/Field/XFieldArea_ElementLocal.cppsrc/Field/XFieldLine_ElementLocal.cppsrc/Field/XFieldVolume_ElementLocal.cpp6e02d6439b6adc9c1434cec5dae14610eff37c6e1536877812000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educaught the memory leak, and a bunch of instantiations and fixes and unit tests etc 2018-09-13 18:30:12 -04006e02d6439b6adc9c1434cec5dae14610eff37c6ecaught the memory leak, and a bunch of instantiations and fixes and unit tests etcedittest/unit/Field/XField2D_ElementLocal_Dual_btest.cppeditsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin.hedittest/unit/Field/XField2D_EdgeLocal_Dual_Split_btest.cppaddsrc/Field/XField_Local_Common_Instantiate_1D.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppeditsrc/Adaptation/MOESS/ErrorModel.haddsrc/Field/XField_Local_Common_Instantiate_3D.cppeditsrc/Field/XFieldArea_ElementLocal.cppaddsrc/Field/XFieldVolume_ElementLocal.cppedittest/unit/Field/XField2D_EdgeLocal_Dual_btest.cppeditsrc/Adaptation/MOESS/MOESSParams.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.heditsrc/Field/XFieldVolume_EdgeLocal.cppeditsrc/Field/XField_ElementLocal.haddsrc/Field/XFieldLine_ElementLocal.cppeditsrc/Field/XField_Local_Common.heditsrc/Adaptation/MOESS/ErrorModel.cppeditsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized.heditsrc/Field/XField_Local_Common_Instantiate_2D.cppeditsrc/Field/XFieldArea_EdgeLocal.cppeditsrc/Discretization/DG/AlgebraicEquationSet_DGBR2_impl.heditsrc/Field/CMakeLists.txtedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cpptest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cppfb0e8154fb3052d821c231874225d5ebb1cd3eac1536877864000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduforgot a thing 2018-09-13 18:31:04 -0400fb0e8154fb3052d821c231874225d5ebb1cd3eacforgot a thingaddtest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cppsrc/Field/XField_Local_Common_Instantiate_3D.cpp188927342f5418b25fb830e55eb0335273ecf9cf1536879568000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edustyle check 2018-09-13 18:59:28 -0400188927342f5418b25fb830e55eb0335273ecf9cfstyle checkeditsrc/Field/XField_Local_Common_Instantiate_3D.cpptest/unit/Field/Element/ElementTuple_btest.cppsrc/Field/Tuple/ParamTuple.h7f4327edb827ffe752c7dd8e803aa083caee8bf71536892292000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded promote_Surreal for ParamTuple 2018-09-13 22:31:32 -04007f4327edb827ffe752c7dd8e803aa083caee8bf7Added promote_Surreal for ParamTupleedittest/unit/Field/Element/ElementTuple_btest.cppeditsrc/Field/Tuple/ParamTuple.htest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppsrc/Field/XField_Local_Common_Instantiate_1D.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cppe9dc57a62b43e777e689809c4741fa2362ae83331536930109000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edufixes: 2018-09-14 09:01:49 -0400e9dc57a62b43e777e689809c4741fa2362ae8333fixes:editsrc/Field/XField_Local_Common_Instantiate_1D.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cpp9768968278d6125282b0c325ff05196d88ffd91c1536931436000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edufile renaming switches 2018-09-14 09:23:56 -04009768968278d6125282b0c325ff05196d88ffd91cfile renaming switchesedittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.htest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cpp7dbada1f04b987404b2931faa61e2f8f59bc469c1536940163000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduforgot to remove print out. 2018-09-14 11:49:23 -04007dbada1f04b987404b2931faa61e2f8f59bc469cforgot to remove print out.edittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cppeditsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.hsrc/Field/XField_Local_Common.h8835ecf3567d57622db9c00a0e0f5fc20908d1c81536948406000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduadded catch for ghost boundaries 2018-09-14 14:06:46 -04008835ecf3567d57622db9c00a0e0f5fc20908d1c8added catch for ghost boundarieseditsrc/Field/XField_Local_Common.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.h3af3779d2a39b8b3b6032086c4ebc3f0a4d707741536948480000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduforgot file write 2018-09-14 14:08:00 -04003af3779d2a39b8b3b6032086c4ebc3f0a4d70774forgot file writeeditsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.hsrc/Field/XField_Local_Common.h7165a5cb7c48d84ca8cbf89a75cccd2acb6a27911536948688000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumissed a thing 2018-09-14 14:11:28 -04007165a5cb7c48d84ca8cbf89a75cccd2acb6a2791missed a thingeditsrc/Field/XField_Local_Common.hsrc/Field/XField_ElementLocal_impl.htest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cppb69bc9f859f0619c63f7d43c06779b5ab294a4701536952364000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduDon't do parallel solves yet with the new ElementDualLocal solves 2018-09-14 15:12:44 -0400b69bc9f859f0619c63f7d43c06779b5ab294a470Don't do parallel solves yet with the new ElementDualLocal solveseditsrc/Field/XField_ElementLocal_impl.hedittest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cpptest/sandbox/Solve2D_DGBR2_Euler_Riemann_AV_RK_toy.cppsrc/pde/NS/BCEulermitAVDiffusion1D.hsrc/pde/NS/BCEulermitAVDiffusion2D.htest/sandbox/Solve2D_DGBR2_Euler_ForwardStep_AV_ST_toy.cppsrc/pde/NS/SolutionFunction_Euler2D.cppsrc/pde/NS/BCEuler1D.cppsrc/pde/NS/BCEuler1D.hsrc/pde/NS/BCEuler2D.hsrc/pde/NS/PDEEulermitAVDiffusion2D.hsrc/pde/NS/PDEEulermitAVDiffusion1D.htest/unit/pde/NS/BCEuler2D_btest.cppsrc/pde/NS/BCEuler2D_mitState.htest/unit/pde/NS/BCEuler1D_btest.cppsrc/pde/NS/BCEuler2D.cppsrc/pde/NS/BCEuler1D_mitState_ST.htest/sandbox/Adapt2D_DGBR2_Euler_ArtNozzle_AV_ST_toy.cppsrc/pde/NS/SolutionFunction_Euler2D.hsrc/pde/NS/BCEuler1D_mitState.hfff384664c2d7fa1993c735ef3496e8ed43177e81536952431000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduAdded TimeOut BC for spacetime that is distinct from BCNone 2018-09-14 15:13:51 -0400fff384664c2d7fa1993c735ef3496e8ed43177e8Added TimeOut BC for spacetime that is distinct from BCNoneeditsrc/pde/NS/PDEEulermitAVDiffusion2D.haddtest/sandbox/Solve2D_DGBR2_Euler_Riemann_AV_RK_toy.cppeditsrc/pde/NS/BCEuler1D_mitState.heditsrc/pde/NS/BCEuler2D.heditsrc/pde/NS/PDEEulermitAVDiffusion1D.hedittest/unit/pde/NS/BCEuler1D_btest.cppeditsrc/pde/NS/BCEulermitAVDiffusion1D.heditsrc/pde/NS/BCEuler2D_mitState.heditsrc/pde/NS/BCEulermitAVDiffusion2D.hedittest/unit/pde/NS/BCEuler2D_btest.cppedittest/sandbox/Solve2D_DGBR2_Euler_ForwardStep_AV_ST_toy.cppeditsrc/pde/NS/BCEuler1D.cppeditsrc/pde/NS/BCEuler1D_mitState_ST.heditsrc/pde/NS/BCEuler2D.cppeditsrc/pde/NS/SolutionFunction_Euler2D.cppeditsrc/pde/NS/BCEuler1D.heditsrc/pde/NS/SolutionFunction_Euler2D.hedittest/sandbox/Adapt2D_DGBR2_Euler_ArtNozzle_AV_ST_toy.cppsrc/BasisFunction/ReferenceElement.hsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Hierarchical.hsrc/BasisFunction/LagrangeDOFMap.hsrc/BasisFunction/Quadrature_Cache.hsrc/BasisFunction/CellToTrace.cppsrc/BasisFunction/BasisFunctionSpacetime_Pentatope.cppsrc/BasisFunction/BasisFunctionSpacetime_Projection.cppsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cppsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.hsrc/BasisFunction/BasisFunction_TraceOrientation.hsrc/BasisFunction/BasisFunctionSpacetime_Pentatope.hsrc/BasisFunction/BasisFunctionSpacetime_Projection.hsrc/BasisFunction/TraceToCellRefCoord.hsrc/Quadrature/QuadratureSpacetime_Pentatope.cppsrc/Quadrature/QuadratureSpacetime.hsrc/Quadrature/CMakeLists.txtsrc/BasisFunction/BasisFunction_RefElement_Split.hsrc/BasisFunction/ReferenceElement.cppsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.cppsrc/BasisFunction/ElementEdges.cppsrc/BasisFunction/BasisFunctionBase.hsrc/BasisFunction/BasisFunctionSpacetime.hsrc/BasisFunction/CMakeLists.txtfa0664b64bf72515e7be189ef8e1bc0991b633691536956950000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edusome 4d stuff 2018-09-14 16:29:10 -0400fa0664b64bf72515e7be189ef8e1bc0991b63369some 4d stuffaddsrc/BasisFunction/BasisFunctionSpacetime_Projection.heditsrc/BasisFunction/CellToTrace.cppeditsrc/BasisFunction/LagrangeDOFMap.haddsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Hierarchical.haddsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.cppeditsrc/BasisFunction/ReferenceElement.haddsrc/Quadrature/QuadratureSpacetime.haddsrc/BasisFunction/BasisFunctionSpacetime_Pentatope.cppeditsrc/BasisFunction/BasisFunction_TraceOrientation.haddsrc/BasisFunction/BasisFunctionSpacetime_Pentatope.heditsrc/BasisFunction/ReferenceElement.cppeditsrc/BasisFunction/TraceToCellRefCoord.haddsrc/BasisFunction/BasisFunctionSpacetime.heditsrc/Quadrature/CMakeLists.txtaddsrc/BasisFunction/BasisFunctionSpacetime_Projection.cppeditsrc/BasisFunction/BasisFunction_RefElement_Split.heditsrc/BasisFunction/CMakeLists.txtaddsrc/Quadrature/QuadratureSpacetime_Pentatope.cppeditsrc/BasisFunction/BasisFunctionBase.haddsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cppeditsrc/BasisFunction/ElementEdges.cppaddsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.heditsrc/BasisFunction/Quadrature_Cache.htest/unit/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange_btest.cpptest/unit/BasisFunction/TraceToCellRefCoord_Pentatope_btest.cpptest/unit/Quadrature/QuadratureSpacetime_Pentatope_btest.cppbe410bb6cef3e78b3d352e98a233b972724b2afc1536957780000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduplaceholders for unit tests 2018-09-14 16:43:00 -0400be410bb6cef3e78b3d352e98a233b972724b2afcplaceholders for unit testsaddtest/unit/Quadrature/QuadratureSpacetime_Pentatope_btest.cppaddtest/unit/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange_btest.cppaddtest/unit/BasisFunction/TraceToCellRefCoord_Pentatope_btest.cppsrc/Meshing/EGTess/EGTessModel_aflr4.cppCMakeInclude/Finds/FindAFLR.cmakesrc/Meshing/EGTess/CMakeLists.txt6031e15e3fcd63f956c6d3b592b572d7416ee9771537018139000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduStart working on latest AFLR4 2018-09-15 09:28:59 -04006031e15e3fcd63f956c6d3b592b572d7416ee977Start working on latest AFLR4editCMakeInclude/Finds/FindAFLR.cmakeeditsrc/Meshing/EGTess/CMakeLists.txteditsrc/Meshing/EGTess/EGTessModel_aflr4.cppscripts/cppcheck/suppressions.txtsrc/BasisFunction/BasisFunctionLine_RBS.hCMakeInclude/CompilerFlags.cmakesrc/Field/XField.hsrc/Field/FieldData/FieldDataMatrixD_Cell.hsrc/BasisFunction/BasisFunctionArea.hsrc/Field/XField_Local_Base.hsrc/BasisFunction/BasisFunctionLine_Lagrange.hsrc/pde/AnalyticFunction/ScalarFunction2D.hsrc/BasisFunction/BasisFunctionVolume.hsrc/Meshing/EGADS/EGFace.cppsrc/Quadrature/QuadratureLine.hsrc/BasisFunction/BasisFunctionNode.hsrc/BasisFunction/BasisFunctionLine_Legendre.htest/unit/Discretization/DG/ElementIntegral_DGBR2_2D_Triangle_AD_btest.cppsrc/pde/AdvectionDiffusion/ViscousFlux2D.hsrc/pde/PorousMedia/RelPermModel_PowerLaw.hsrc/Adaptation/MOESS/CostModel_LogEuclidean.cppsrc/Meshing/EGTess/XFieldDomain.hsrc/BasisFunction/BasisFunctionSpacetime.hsrc/BasisFunction/BasisFunctionLine_Bernstein.hsrc/pde/PorousMedia/ViscosityModel_Constant.hsrc/Meshing/EGADS/EGLoop.cppsrc/Python/PyDict.hsrc/BasisFunction/BasisFunctionLine_Hierarchical.hsrc/BasisFunction/BasisFunctionLineBase.hsrc/Meshing/EGADS/EGObject.hsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatrixD_NonZeroPattern.hsrc/pde/PorousMedia/DensityModel.hsrc/Discretization/QuadratureOrder.hsrc/pde/AnalyticFunction/ScalarFunction1D.hsrc/BasisFunction/BasisFunctionSpacetime_Pentatope.cppsrc/Field/XField_Local_Common.hsrc/Meshing/EGADS/EGObject.cppsrc/Adaptation/MOESS/TAO/MOESS_PX_Optimizer_TAO.cppsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.hsrc/pde/PorousMedia/CapillaryModel.hsrc/Field/Element/GalerkinWeightedIntegral_New.hsrc/pde/AdvectionDiffusion/ViscousFlux1D.hsrc/Meshing/EGADS/EGBody.cppsrc/Python/Parameter.hsrc/pde/AdvectionDiffusion/ViscousFlux3D.htest/unit/LinearAlgebra/DenseLinAlg/VectorS_btest.cppsrc/Field/FieldAssociativityConstructor.hsrc/pde/PorousMedia/PorosityModel.hcd1a51db53976221ee34dffa74495fd0004d29461537154858000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMany cppcheck fixes, but not all 2018-09-16 23:27:38 -0400cd1a51db53976221ee34dffa74495fd0004d2946Many cppcheck fixes, but not alleditsrc/Meshing/EGADS/EGFace.cppeditscripts/cppcheck/suppressions.txteditsrc/Adaptation/MOESS/TAO/MOESS_PX_Optimizer_TAO.cppeditsrc/Field/FieldAssociativityConstructor.heditsrc/BasisFunction/BasisFunctionLine_RBS.heditsrc/BasisFunction/BasisFunctionNode.heditsrc/Meshing/EGADS/EGObject.heditsrc/BasisFunction/BasisFunctionSpacetime_Pentatope.cppeditsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.heditsrc/Meshing/EGADS/EGBody.cppeditsrc/pde/PorousMedia/PorosityModel.hedittest/unit/LinearAlgebra/DenseLinAlg/VectorS_btest.cppeditsrc/Meshing/EGADS/EGLoop.cppeditsrc/BasisFunction/BasisFunctionLine_Bernstein.heditsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatrixD_NonZeroPattern.hedittest/unit/Discretization/DG/ElementIntegral_DGBR2_2D_Triangle_AD_btest.cppeditsrc/Field/XField_Local_Common.heditsrc/pde/AnalyticFunction/ScalarFunction1D.heditCMakeInclude/CompilerFlags.cmakeeditsrc/pde/PorousMedia/RelPermModel_PowerLaw.heditsrc/Field/XField_Local_Base.heditsrc/pde/PorousMedia/ViscosityModel_Constant.heditsrc/pde/PorousMedia/CapillaryModel.heditsrc/BasisFunction/BasisFunctionLine_Lagrange.heditsrc/Meshing/EGTess/XFieldDomain.heditsrc/Quadrature/QuadratureLine.heditsrc/pde/AdvectionDiffusion/ViscousFlux3D.heditsrc/BasisFunction/BasisFunctionLineBase.heditsrc/Meshing/EGADS/EGObject.cppeditsrc/Python/Parameter.heditsrc/BasisFunction/BasisFunctionSpacetime.heditsrc/Field/XField.heditsrc/pde/AdvectionDiffusion/ViscousFlux1D.heditsrc/Discretization/QuadratureOrder.heditsrc/Field/Element/GalerkinWeightedIntegral_New.heditsrc/Field/FieldData/FieldDataMatrixD_Cell.heditsrc/pde/AnalyticFunction/ScalarFunction2D.heditsrc/Python/PyDict.heditsrc/pde/AdvectionDiffusion/ViscousFlux2D.heditsrc/Adaptation/MOESS/CostModel_LogEuclidean.cppeditsrc/BasisFunction/BasisFunctionLine_Hierarchical.heditsrc/BasisFunction/BasisFunctionLine_Legendre.heditsrc/BasisFunction/BasisFunctionArea.heditsrc/pde/PorousMedia/DensityModel.heditsrc/BasisFunction/BasisFunctionVolume.hsrc/Meshing/EGADS/EGModel.cppsrc/Meshing/EGADS/EGObject.hsrc/Meshing/EGADS/EGModel.h9098cad7325746bf0e6d0aeff649ab7fa08de4561537156773000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed compile error 2018-09-16 23:59:33 -04009098cad7325746bf0e6d0aeff649ab7fa08de456Fixed compile erroreditsrc/Meshing/EGADS/EGModel.heditsrc/Meshing/EGADS/EGModel.cppeditsrc/Meshing/EGADS/EGObject.htest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cppsrc/Field/XField_Local_Common.h7bbfb76877ad3f42124abf37185592109a945e071537204402000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educaught a ghost boundary bug, now have different bugs in parallel 2018-09-17 13:13:22 -04007bbfb76877ad3f42124abf37185592109a945e07caught a ghost boundary bug, now have different bugs in paralleleditsrc/Field/XField_Local_Common.hedittest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cppsrc/Meshing/EGTess/EGTessModel_aflr4.cppsrc/Meshing/EGTess/CMakeLists.txt23c33177d037759415499b937faa4e6ffd71aa561537209556000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMore work on latest AFLR4, does not work yet 2018-09-17 14:39:16 -040023c33177d037759415499b937faa4e6ffd71aa56More work on latest AFLR4, does not work yeteditsrc/Meshing/EGTess/CMakeLists.txteditsrc/Meshing/EGTess/EGTessModel_aflr4.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cppsrc/Field/XField_impl.hsrc/Field/Partition/XField_Lagrange_balance_impl.htest/system/LocalSolve/EdgeLocalSolve2D_Primal_Galerkin_Stabilized_Triangle_AD_btest.cpp38dc6c59da61233163956a2abf02363dd4dc2cb81537224113000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdated Partiioning for CG element dual solves 2018-09-17 18:41:53 -040038dc6c59da61233163956a2abf02363dd4dc2cb8Updated Partiioning for CG element dual solveseditsrc/Field/XField_impl.heditsrc/Field/Partition/XField_Lagrange_balance_impl.hedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cppedittest/system/LocalSolve/EdgeLocalSolve2D_Primal_Galerkin_Stabilized_Triangle_AD_btest.cpptest/system/LocalSolve/EdgeLocalSolve2D_Primal_Galerkin_Stabilized_Triangle_AD_btest.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cppCMakeInclude/Checks/CheckCAPS.cmake197030a468b4dd207e71543112c67652dd801a5a1537231792000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduRelaxed tolerances on local solves 2018-09-17 20:49:52 -0400197030a468b4dd207e71543112c67652dd801a5aRelaxed tolerances on local solvesedittest/system/LocalSolve/EdgeLocalSolve2D_Primal_Galerkin_Stabilized_Triangle_AD_btest.cppedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cppeditCMakeInclude/Checks/CheckCAPS.cmakescripts/jenkins/SANS_Commit.shtest/sandbox/Solve2D_DGBR2_Euler_Riemann_AV_RK_toy.cpp1dc02e8f08700d4137a5238b5091960f131b93b31537269036000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduNightly fixes 2018-09-18 07:10:36 -04001dc02e8f08700d4137a5238b5091960f131b93b3Nightly fixeseditscripts/jenkins/SANS_Commit.shedittest/sandbox/Solve2D_DGBR2_Euler_Riemann_AV_RK_toy.cppCMakeInclude/Builds/BuildPETSC.cmakeCMakeInclude/Checks/CheckPETSC.cmakeCMakeInclude/Checks/petsc_ksp_ex1_test.cxx39ff887f6bc4e4fb3520d3a199e646b931eeaee91537270700000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpgraded PETSc version 2018-09-18 07:38:20 -040039ff887f6bc4e4fb3520d3a199e646b931eeaee9Upgraded PETSc versioneditCMakeInclude/Checks/CheckPETSC.cmakeeditCMakeInclude/Checks/petsc_ksp_ex1_test.cxxeditCMakeInclude/Builds/BuildPETSC.cmakeCMakeInclude/Checks/CheckPETSC.cmake76107e6d8cb21eb808d0c05118b4cf9c27b5a3411537275011000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed PETSc version test 2018-09-18 08:50:11 -040076107e6d8cb21eb808d0c05118b4cf9c27b5a341Fixed PETSc version testeditCMakeInclude/Checks/CheckPETSC.cmakesrc/pde/AnalyticFunction/ScalarFunction2D.h89b4e01ffdb3cd29f49a77998f6325d93ebf9ed61537304137000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educhanged to allow Real indices for monomial 2018-09-18 16:55:37 -040089b4e01ffdb3cd29f49a77998f6325d93ebf9ed6changed to allow Real indices for monomialeditsrc/pde/AnalyticFunction/ScalarFunction2D.htest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cppcd34ec2d9643e438b694f8aef2aec38a03050b7a1537304167000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduadded ghost tests, turned off the split ghost tests, as we don't have a large enough grid that group 0 has no frozen dofs 2018-09-18 16:56:07 -0400cd34ec2d9643e438b694f8aef2aec38a03050b7aadded ghost tests, turned off the split ghost tests, as we don't have a large enough grid that group 0 has no frozen dofsedittest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cppsrc/Meshing/EGTess/EGTessModel_aflr4.cppsrc/Meshing/EGTess/EGTessModel.hCMakeInclude/Finds/FindAFLR.cmakesrc/Meshing/EGTess/CMakeLists.txtf2333cb929c84e044775c028e998dbe21409dd651537361830000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMany AFLR4 updates 2018-09-19 08:57:10 -0400f2333cb929c84e044775c028e998dbe21409dd65Many AFLR4 updateseditCMakeInclude/Finds/FindAFLR.cmakeeditsrc/Meshing/EGTess/EGTessModel.heditsrc/Meshing/EGTess/EGTessModel_aflr4.cppeditsrc/Meshing/EGTess/CMakeLists.txtsrc/Discretization/Galerkin/Stabilization_Galerkin.h5dec5b1a01446db349c6d6fb72a9698828872fd31537362874000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educhanged some comments 2018-09-19 09:14:34 -04005dec5b1a01446db349c6d6fb72a9698828872fd3changed some commentseditsrc/Discretization/Galerkin/Stabilization_Galerkin.hsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.htest/sandbox/Adapt2D_Galerkin_Stabilized_L2_CornerSingularity_toy.cppsrc/Discretization/Galerkin/Stabilization_Galerkin.htest/sandbox/Adapt2D_Galerkin_Stabilized_Poisson_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cpp554c683159bb21d09bdf75dae3a4efa51a28cdb21537369040000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduvim put some actual tabs in... and changing some odd pieces 2018-09-19 10:57:20 -0400554c683159bb21d09bdf75dae3a4efa51a28cdb2vim put some actual tabs in... and changing some odd pieceseditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.hedittest/sandbox/Adapt2D_Galerkin_Stabilized_Poisson_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_L2_CornerSingularity_toy.cppeditsrc/Discretization/Galerkin/Stabilization_Galerkin.hedittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cppCMakeInclude/Finds/FindAFLR.cmakesrc/Meshing/EGTess/CMakeLists.txt6669c434bfc8a2a3d8de0361a4f171eea97689a81537375533000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAnother try 2018-09-19 12:45:33 -04006669c434bfc8a2a3d8de0361a4f171eea97689a8Another tryeditCMakeInclude/Finds/FindAFLR.cmakeeditsrc/Meshing/EGTess/CMakeLists.txttest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppcbb74e332f152c9845556b3738b33679b33d9adc1537386541000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduwarning about unset data 2018-09-19 15:49:01 -0400cbb74e332f152c9845556b3738b33679b33d9adcwarning about unset dataedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt1D_DGBR2_AD_toy.cppe515bd0a0b35567aab594d50e5ef634f7c6807a21537389614000https://acdl.mit.edu/csi/user/ursachiursachiursachi@mit.eduAdded 1D AR test file 2018-09-19 16:40:14 -0400e515bd0a0b35567aab594d50e5ef634f7c6807a2Added 1D AR test fileaddtest/sandbox/Adapt1D_DGBR2_AD_toy.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cpp2e1e6caaef6bacb75cfd0cb170941af0ceb18d1b1537392710000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edurelaxing tolerance 2018-09-19 17:31:50 -04002e1e6caaef6bacb75cfd0cb170941af0ceb18d1brelaxing toleranceedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cppsrc/Meshing/EGTess/XFieldDomain_impl.hsrc/BasisFunction/TraceToCellRefCoord_Tetrahedron.cpptest/unit/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange_btest.cppsrc/BasisFunction/Documentation/TraceToCellRefCoord.msrc/BasisFunction/Quadrature_Cache.htest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppsrc/BasisFunction/BasisFunctionSpacetime_Pentatope.cppsrc/Quadrature/Quadrature_Simplex_GrundmannMoeller.hsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cppsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.htest/unit/Quadrature/QuadratureSpacetime_Pentatope_btest.cppsrc/BasisFunction/BasisFunctionSpacetime_Pentatope.hsrc/Quadrature/QuadratureSpacetime_Pentatope.cppsrc/Meshing/avro/MesherInterface_avro.cppsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.cppsrc/Meshing/avro/CMakeLists.txtsrc/Meshing/EGTess/XFieldDomain.hCMakeInclude/Finds/FindAVRO.cmake751d1a448352e89a5e0ba42b15cf978b051c5ccc1537394421000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edutrace to cell reference coordinates (plus matlab script), grundmann-moeller quadrature unit tests 2018-09-19 18:00:21 -0400751d1a448352e89a5e0ba42b15cf978b051c5ccctrace to cell reference coordinates (plus matlab script), grundmann-moeller quadrature unit testseditsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.hedittest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppeditsrc/Meshing/avro/CMakeLists.txteditsrc/BasisFunction/BasisFunctionSpacetime_Pentatope.cppeditsrc/BasisFunction/BasisFunctionSpacetime_Pentatope.heditsrc/Meshing/avro/MesherInterface_avro.cppeditCMakeInclude/Finds/FindAVRO.cmakeeditsrc/BasisFunction/Quadrature_Cache.hedittest/unit/Quadrature/QuadratureSpacetime_Pentatope_btest.cppeditsrc/Meshing/EGTess/XFieldDomain_impl.heditsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.cppaddsrc/BasisFunction/Documentation/TraceToCellRefCoord.meditsrc/Meshing/EGTess/XFieldDomain.heditsrc/BasisFunction/TraceToCellRefCoord_Tetrahedron.cppeditsrc/Quadrature/QuadratureSpacetime_Pentatope.cppaddsrc/Quadrature/Quadrature_Simplex_GrundmannMoeller.hedittest/unit/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange_btest.cppeditsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cpptest/unit/Quadrature/QuadratureSpacetime_Pentatope_btest.cppf49c7503dfdbc1711f644b51cee67776da8b5ffe1537394545000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edutrace to cell reference coordinates (plus matlab script), grundmann-moeller quadrature unit tests 2018-09-19 18:02:25 -0400f49c7503dfdbc1711f644b51cee67776da8b5ffetrace to cell reference coordinates (plus matlab script), grundmann-moeller quadrature unit testsedittest/unit/Quadrature/QuadratureSpacetime_Pentatope_btest.cppsrc/Meshing/EGTess/EGTessModel.cppsrc/Meshing/EGTess/EGTessModel.hb4d9a7952e043505e6e4259f07619a5728d000641537396713000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded a tecplot dump for EGTessModel 2018-09-19 18:38:33 -0400b4d9a7952e043505e6e4259f07619a5728d00064Added a tecplot dump for EGTessModeleditsrc/Meshing/EGTess/EGTessModel.heditsrc/Meshing/EGTess/EGTessModel.cppsrc/BasisFunction/TraceToCellRefCoord.hsrc/BasisFunction/TraceToCellRefCoord_Tetrahedron.cppsrc/BasisFunction/TraceToCellRefCoord_Hexahedron.cppsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cpptest/unit/Quadrature/QuadratureSpacetime_Pentatope_btest.cppsrc/Topology/ElementTopology.hb1796ed928766b6b28e80e46b6cfcb964cd84d921537447316000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduelement topology tracks number of permutations so possible trace orientations is correct 2018-09-20 08:41:56 -0400b1796ed928766b6b28e80e46b6cfcb964cd84d92element topology tracks number of permutations so possible trace orientations is correctedittest/unit/Quadrature/QuadratureSpacetime_Pentatope_btest.cppeditsrc/Topology/ElementTopology.heditsrc/BasisFunction/TraceToCellRefCoord_Tetrahedron.cppeditsrc/BasisFunction/TraceToCellRefCoord.heditsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cppeditsrc/BasisFunction/TraceToCellRefCoord_Hexahedron.cppsrc/Meshing/EGTess/EGTessModel_aflr4.cppsrc/Meshing/EGTess/EGTessModel.cppbf23ce32fddc0a7b0d031ce1d3cf7e0c848a262f1537469608000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMore debugging outputs 2018-09-20 14:53:28 -0400bf23ce32fddc0a7b0d031ce1d3cf7e0c848a262fMore debugging outputseditsrc/Meshing/EGTess/EGTessModel_aflr4.cppeditsrc/Meshing/EGTess/EGTessModel.cpptest/unit/CMakeLists.txttest/CMakeLists.txttest/system/CMakeLists.txt8c2e27843d8e6adf8160044ed840e3ddbeadfc6b1537480927000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixes so boost xml files are correctly dumped 2018-09-20 18:02:07 -04008c2e27843d8e6adf8160044ed840e3ddbeadfc6bFixes so boost xml files are correctly dumpededittest/unit/CMakeLists.txtedittest/CMakeLists.txtedittest/system/CMakeLists.txttest/CMakeLists.txttest/system/CMakeLists.txtd617b0675d37f022ad63e033e06ca150a463509e1537493966000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed system tests for coverage 2018-09-20 21:39:26 -0400d617b0675d37f022ad63e033e06ca150a463509eFixed system tests for coverageedittest/system/CMakeLists.txtedittest/CMakeLists.txttest/unit/Discretization/Block/CMakeLists.txta7c18303b4f50a07eef01e32ed6be80a7f1d77bb1537497227000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAllowed for longer run times on specific tests 2018-09-20 22:33:47 -0400a7c18303b4f50a07eef01e32ed6be80a7f1d77bbAllowed for longer run times on specific testsedittest/unit/Discretization/Block/CMakeLists.txttest/unit/CMakeLists.txttest/CMakeLists.txttest/system/CMakeLists.txt905b58e60d036aa879df67551130e2bcaa8bdae91537501495000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduOne more tweak for coverage of system tests 2018-09-20 23:44:55 -0400905b58e60d036aa879df67551130e2bcaa8bdae9One more tweak for coverage of system testsedittest/CMakeLists.txtedittest/system/CMakeLists.txtedittest/unit/CMakeLists.txttest/system/CMakeLists.txt944f0c8515d1879cff948d9c70415925bf1909ff1537501631000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduTypo 2018-09-20 23:47:11 -0400944f0c8515d1879cff948d9c70415925bf1909ffTypoedittest/system/CMakeLists.txttest/CMakeLists.txt988e44118dc1c2ff33544bec7404f63f66ded4db1537528741000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMissed one more 2018-09-21 07:19:01 -0400988e44118dc1c2ff33544bec7404f63f66ded4dbMissed one moreedittest/CMakeLists.txttest/CMakeLists.txttest/system/CMakeLists.txt5a529040fe7bb9abd7ca0f961908b8d5d3b277c91537528769000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduForgot to add files 2018-09-21 07:19:29 -04005a529040fe7bb9abd7ca0f961908b8d5d3b277c9Forgot to add filesedittest/system/CMakeLists.txtedittest/CMakeLists.txttest/CMakeLists.txtf8cd7ebc758d385e6b594a74110b9df750c28ad01537528887000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduOne more typo 2018-09-21 07:21:27 -0400f8cd7ebc758d385e6b594a74110b9df750c28ad0One more typoedittest/CMakeLists.txttest/unit/CMakeLists.txttest/CMakeLists.txttest/system/CMakeLists.txt39d2c09b2c0b27b1d9aa6fe6b37ad7d84c44d0b81537530819000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduA slightly different version 2018-09-21 07:53:39 -040039d2c09b2c0b27b1d9aa6fe6b37ad7d84c44d0b8A slightly different versionedittest/CMakeLists.txtedittest/system/CMakeLists.txtedittest/unit/CMakeLists.txttest/unit/CMakeLists.txttest/system/CMakeLists.txt2608407d4adec175f22fcf5122fda4523532664b1537533372000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMinor fix 2018-09-21 08:36:12 -04002608407d4adec175f22fcf5122fda4523532664bMinor fixedittest/unit/CMakeLists.txtedittest/system/CMakeLists.txttest/unit/CMakeLists.txt625782b0b646197cbb89340f9f4832b8a36183b61537538613000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed find and replace mistake 2018-09-21 10:03:33 -0400625782b0b646197cbb89340f9f4832b8a36183b6Fixed find and replace mistakeedittest/unit/CMakeLists.txtsrc/BasisFunction/Quadrature_Cache.hsrc/BasisFunction/BasisFunctionSpacetime_Pentatope.cppsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cppsrc/Quadrature/Quadrature_Simplex_GrundmannMoeller.h7f953daf063e9cafaca805ac57ce09cb7f762f821537549001000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edufixed a few bugs with trace-to-cell ref coordinates 2018-09-21 12:56:41 -04007f953daf063e9cafaca805ac57ce09cb7f762f82fixed a few bugs with trace-to-cell ref coordinateseditsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cppeditsrc/BasisFunction/BasisFunctionSpacetime_Pentatope.cppeditsrc/BasisFunction/Quadrature_Cache.heditsrc/Quadrature/Quadrature_Simplex_GrundmannMoeller.htest/unit/Discretization/Galerkin/ResidualCell_Galerkin_IRS_AD_btest.cpptest/unit/pde/CauchyRiemann/PDECauchyRiemann2D_btest.cpptest/unit/Discretization/HDG/ResidualCell_HDG_HB_AD_btest.cppsrc/pde/PorousMedia/PDEBuckleyLeverett_ArtificialViscosity1D.htest/unit/Discretization/Galerkin/IntegrandCell_Galerkin_AD_btest.cpptest/unit/pde/AdvectionDiffusion/PDEAdvectionDiffusion1D_btest.cppsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion1D.hsrc/Discretization/Galerkin/IntegrandCell_Galerkin_HB.hsrc/pde/NS/PDEEulermitAVDiffusion3D.htest/unit/pde/CauchyRiemann/PDECauchyRiemann2D_SurrealD_btest.cppsrc/pde/FullPotential/PDELinearizedIncompressiblePotential3D.htest/unit/Discretization/Galerkin/IntegrandBoundaryTrace_LinearScalar_sansLG_Galerkin_AD_btest.cpptest/unit/Discretization/DG/ResidualBoundaryTrace_Dirichlet_mitState_DGBR2_AD_btest.cppsrc/pde/HSM/PDEHSM2D.htest/unit/Discretization/HDG/IntegrandFunctor_HDG_HB_AD_btest.cpptest/unit/pde/FullPotential/PDELinearizedIncompressiblePotential2D_btest.cpptest/unit/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized_AD_btest.cpptest/unit/Discretization/Galerkin/IntegrandCell_ProjectFunction_btest.cpptest/unit/ErrorEstimate/ErrorEstimateBoundaryTrace_HDG_AD_btest.cpptest/unit/Discretization/DG/ResidualCell_DGAdvective_Euler2D_btest.cpptest/unit/Discretization/Galerkin/IntegrandCell_Galerkin_ShallowWater1D_btest.cppsrc/pde/ShallowWater/PDEShallowWater1D.htest/unit/Discretization/HDG/IntegrandFunctor_HDG_ST_AD_btest.cpptest/unit/Discretization/Galerkin/IntegrandCell_Galerkin_HB_AD_btest.cppsrc/pde/NS/PDERANSSA3D.htest/unit/ErrorEstimate/AWResidualInteriorTrace_HDG_AD_btest_OFF.cpptest/unit/pde/CauchyRiemann/PDECauchyRiemann2D_SurrealS_btest.cpptest/unit/Discretization/HDG/isValidStateInteriorTrace_HDG_Euler_btest.cppsrc/pde/Sensor/PDESensorParameter2D.htest/unit/pde/PorousMedia/PDETwoPhase_ArtificialViscosity2D_btest.cpptest/unit/pde/NDConvert/PDENDConvert1D_AD_btest.cpptest/unit/pde/Burgers/PDEBurgers_ArtificialViscosity1D_btest.cpptest/unit/pde/Sensor/PDESensorParameter1D_btest.cpptest/unit/Discretization/DG/IntegrandCell_DGBR2_AD_btest.cpptest/unit/Discretization/Galerkin/isValidStateInteriorTrace_Euler_btest.cpptest/unit/ErrorEstimate/ErrorEstimateNodal_Galerkin_AD_btest.cpptest/unit/Discretization/DG/SetFieldInteriorTrace_DGBR2_LiftedQuantity_TwoPhaseAV_btest.cppsrc/pde/Burgers/PDEBurgers_ArtificialViscosity2D.htest/unit/Discretization/HDG/IntegrandCell_HDG_NS_btest.cpptest/unit/ErrorEstimate/ErrorEstimateCell_DGBR2_AD_btest.cppsrc/pde/NS/PDENavierStokes2D.hsrc/Discretization/HDG/IntegrandFunctor_HDG_PTC.htest/unit/Discretization/DG/IntegrandBoundaryTrace_Dirichlet_mitState_DGBR2_BuckleyLeverett_btest.cpptest/unit/pde/PorousMedia/PDETwoPhase_ArtificialViscosity1D_btest.cpptest/unit/pde/Sensor/PDESensorParameter2D_btest.cpptest/unit/ErrorEstimate/ErrorEstimateBoundaryTrace_DGBR2_AD_btest.cpptest/unit/ErrorEstimate/ErrorEstimateCell_PrimalStrongForm_Galerkin_AD_btest.cppsrc/pde/NS/PDEEuler2D.htest/unit/Discretization/Galerkin/ResidualCell_Galerkin_HSM2D_btest.cpptest/unit/Discretization/Galerkin/ResidualBoundaryTrace_LinearScalar_mitLG_Galerkin_AD_btest.cpptest/unit/Discretization/DG/IntegrandInteriorTrace_DGBR2_Sensor_btest.cpptest/unit/pde/NS/PDEEuler2D_btest.cpptest/unit/ErrorEstimate/ErrorEstimateCell_DGBR2_LiftedQuantity_TwoPhaseAV_btest.cppsrc/PanelMethod/ProjectionToQauxi_IBL.htest/unit/Discretization/HDG/IntegrandCell_HDG_AD_btest.cppsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion3D.hsrc/pde/PorousMedia/PDETwoPhase1D.htest/unit/Discretization/Galerkin/ResidualCell_Galerkin_AD_btest.cpptest/unit/pde/Distance/PDEEikonal_Distance2D_btest.cppsrc/pde/ArtificialViscosity/PDEmitAVSensor1D.htest/unit/Discretization/Galerkin/ResidualCell_Galerkin_ShallowWater1D_btest.cpptest/unit/pde/NS/PDEEulermitAVDiffusion3D_btest.cppsrc/pde/NS/PDENavierStokes1D.htest/unit/Discretization/DG/ResidualCell_DGBR2_AD_btest.cppsrc/pde/Burgers/PDEBurgers_ArtificialViscosity1D.htest/unit/Discretization/Galerkin/IntegrandCell_Galerkin_HSM2D_btest.cppsrc/Discretization/Galerkin/IntegrandInteriorTrace_Galerkin_StrongForm.htest/unit/Discretization/Galerkin/ResidualCell_Galerkin_CR_btest.cpptest/unit/pde/NS/PDERANSSA3D_btest.cppsrc/pde/PorousMedia/PDETwoPhase_ArtificialViscosity2D.htest/unit/pde/PorousMedia/PDETwoPhase1D_btest.cpptest/unit/pde/NS/PDENavierStokes3D_btest.cpptest/unit/pde/ShallowWater/PDEShallowWater1D_btest.cpptest/unit/pde/IBL/PDEIBL2D_btest.cpptest/unit/Discretization/DG/IntegrandCell_DGAdvective_Euler2D_btest.cppsrc/Discretization/Galerkin/IntegrandCell_Galerkin_PTC.htest/unit/pde/AdvectionDiffusion/PDEAdvectionDiffusion2D_btest.cpptest/unit/ErrorEstimate/ErrorEstimateInteriorTrace_HDG_AD_btest.cpptest/unit/pde/HSM/PDEHSM2D_btest.cpptest/unit/pde/ArtificialVi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est/unit/pde/ShallowWater/PDEShallowWater2D_manifold_btest.cppsrc/pde/NS/PDEEuler1D.htest/unit/ErrorEstimate/ErrorEstimateBoundaryTrace_Galerkin_AD_btest.cpptest/unit/ErrorEstimate/AWIntegrandBoundaryFunctor_HDG_AD_btest_OFF.cppsrc/pde/IBL/PDEIBL2D.hsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion2D.htest/unit/Discretization/HDG/ResidualInteriorTrace_HDG_AD_btest.cpptest/unit/Discretization/HDG/IntegrandInteriorTrace_HDG_AD_btest.cpptest/unit/Discretization/HDG/ResidualBoundaryTrace_LinearScalar_FieldTrace_HDG_AD_btest_LGOFF.cpptest/unit/Discretization/DG/IntegrandBoundaryTrace_Dirichlet_mitState_DGBR2_AD_btest.cppsrc/pde/ArtificialViscosity/PDEmitAVSensor2D.htest/unit/ErrorEstimate/ErrorEstimate_Galerkin_AD_btest.cpptest/unit/Discretization/HDG/ResidualCell_HDG_AD_btest.cpptest/unit/Discretization/Galerkin/IntegrandInteriorTrace_Galerkin_StrongForm_AD_btest.cpptest/unit/Discretization/DG/ResidualCell_DGBR2_LiftedQuantity_TwoPhaseAV_btest.cppsrc/pde/PorousMedia/PDEBuckleyLeverett1D.hsrc/pde/Burgers/PDEBurgers1D.hsrc/Discretization/HDG/IntegrandFunctor_HDG_HB.hsrc/pde/ShallowWater/PDEShallowWater2D_manifold.hsrc/pde/ShallowWater/PDEShallowWater2D.hsrc/pde/PorousMedia/PDETwoPhaseLinearized1D.htest/unit/Discretization/DG/IntegrandBoundaryTrace_Flux_mitState_DGBR2_AD_btest.cpptest/unit/Discretization/Galerkin/IntegrandCell_Galerkin_PTC_AD_btest.cppsrc/Discretization/Galerkin/IntegrandCell_Galerkin_IRS.ha5a498a3324aa6314c48be56839565effc025f3b1537549642000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduhasFluxConservative is noe hasFluxAdvectiveTime 2018-09-21 13:07:22 -0400a5a498a3324aa6314c48be56839565effc025f3bhasFluxConservative is noe 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ation/Galerkin/IntegrandCell_Galerkin_Stabilized_NS_btest.cppedittest/unit/Discretization/Galerkin/IntegrandBoundaryTrace_None_Galerkin_AD_btest.cppedittest/unit/Discretization/HDG/IntegrandCell_HDG_NS_btest.cppedittest/unit/ErrorEstimate/ErrorEstimateInteriorTrace_HDG_AD_btest.cppedittest/unit/pde/ArtificialViscosity/PDEmitAVSensor2D_btest.cppeditsrc/pde/NS/PDENavierStokes3D.heditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Conservative.hedittest/unit/Discretization/DG/IntegrandBoundaryTrace_Flux_mitState_DGBR2_AD_btest.cppeditsrc/pde/ShallowWater/PDEShallowWater2D_manifold.heditsrc/pde/NS/PDEEuler3D.hedittest/unit/pde/AdvectionDiffusion/PDEAdvectionDiffusion2D_btest.cppeditsrc/pde/Burgers/PDEBurgers2D.heditsrc/pde/Burgers/PDEBurgers_ArtificialViscosity1D.heditsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion3D.heditsrc/pde/Burgers/PDEBurgers_ArtificialViscosity2D.hedittest/unit/Discretization/Galerkin/IntegrandCell_Galerkin_BDF_AD_btest.cppeditsrc/pde/PorousMedia/PDETwoPhaseLinearized1D.hedittest/unit/pde/NS/PDEEulermitAVDiffusion2D_btest.cppeditsrc/pde/ShallowWater/PDEShallowWater1D.hedittest/unit/Discretization/HDG/IntegrandInteriorTrace_HDG_AD_btest.cppedittest/unit/Discretization/DG/IntegrandBoundaryTrace_LinearScalar_sansLG_DGBR2_AD_btest.cppedittest/unit/Discretization/Galerkin/ResidualBoundaryTrace_None_Galerkin_AD_btest.cppeditsrc/pde/FullPotential/PDEFullPotential3D.heditsrc/pde/NS/PDEEuler2D.heditsrc/pde/NS/PDEEulermitAVDiffusion2D.hedittest/unit/Discretization/HDG/ResidualInteriorTrace_HDG_AD_btest.cppedittest/unit/ErrorEstimate/AWIntegrandFunctor_HDG_AD_btest_OFF.cppedittest/unit/ErrorEstimate/ErrorEstimateCell_DGBR2_AD_btest.cppedittest/unit/pde/NS/PDERANSSA2D_btest.cppedittest/unit/pde/FullPotential/PDEIncompressiblePotentialTwoField2D_btest.cppedittest/unit/Discretization/DG/IntegrandBoundaryTrace_Dirichlet_mitState_DGBR2_BuckleyLeverett_btest.cppedittest/unit/SolutionTrek/Continuation/PDEHomotopy_btest.cppsrc/Field/CMakeLists.txtsrc/Field/XFieldTypes.hsrc/Field/Element/ReferenceElementMesh.cppsrc/Field/Element/ReferenceElementMesh.h9ac32ff2716e5ff0bb79b7608a5a3553e771ba7d1537559469000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduxfield and element definitions for pentatopes 2018-09-21 15:51:09 -04009ac32ff2716e5ff0bb79b7608a5a3553e771ba7dxfield and element definitions for pentatopeseditsrc/Field/Element/ReferenceElementMesh.cppeditsrc/Field/XFieldTypes.heditsrc/Field/Element/ReferenceElementMesh.heditsrc/Field/CMakeLists.txtsrc/Field/Element/ElementAssociativitySpacetimeConstructor.cppsrc/Field/FieldBaseSpacetime_Instantiate.cppsrc/Field/FieldSpacetime.hsrc/Field/XFieldSpacetime_Traits.hsrc/Field/Element/ElementXFieldSpacetime_impl.hsrc/Field/FieldGroupSpacetime_Traits.hsrc/Field/Element/ElementXFieldSpacetime_Instantiate_4D.cppsrc/Field/Element/ElementSpacetime.hsrc/Field/Element/ElementAssociativitySpacetime.hsrc/Field/Element/ElementAssociativitySpacetimeConstructor.hsrc/Field/Element/ElementXFieldSpacetime.hsrc/Field/XFieldSpacetime.hb0cff47f85d1a6f33066ec3a319ef2a2b364d04c1537559551000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduspacetime field and element files 2018-09-21 15:52:31 -0400b0cff47f85d1a6f33066ec3a319ef2a2b364d04cspacetime field and element filesaddsrc/Field/XFieldSpacetime_Traits.haddsrc/Field/Element/ElementAssociativitySpacetimeConstructor.haddsrc/Field/Element/ElementXFieldSpacetime_impl.haddsrc/Field/Element/ElementXFieldSpacetime_Instantiate_4D.cppaddsrc/Field/FieldGroupSpacetime_Traits.haddsrc/Field/XFieldSpacetime.haddsrc/Field/Element/ElementAssociativitySpacetimeConstructor.cppaddsrc/Field/FieldBaseSpacetime_Instantiate.cppaddsrc/Field/Element/ElementXFieldSpacetime.haddsrc/Field/Element/ElementAssociativitySpacetime.haddsrc/Field/Element/ElementSpacetime.haddsrc/Field/FieldSpacetime.htest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cpp69b36fa8389c6624e489b91c91b3e5d5db2af4a71537575672000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edutolerance 2018-09-21 20:21:12 -040069b36fa8389c6624e489b91c91b3e5d5db2af4a7toleranceedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cpp218d74e40f5584ad4bddc2bae9f45fb8a987c2281537616591000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edurelaxed again 2018-09-22 07:43:11 -0400218d74e40f5584ad4bddc2bae9f45fb8a987c228relaxed againedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cppsrc/Field/tools/for_each_InteriorTraceGroup_Cell.hsrc/Field/FieldVolume_Instantiate_4D.cppsrc/Field/tools/for_each_CellGroup.hsrc/Quadrature/Quadrature.hsrc/Field/XFieldSpacetime.hsrc/Field/tools/for_each_InteriorFieldTraceGroup.hsrc/Field/tools/for_each_HubTraceGroup.hsrc/Field/XFieldVolume_Traits.hsrc/Field/CMakeLists.txtsrc/Field/FieldSpacetime_Instantiate_4D.cppsrc/Field/XFieldVolume_Instantiate_4D.cppsrc/Field/tools/for_each_BoundaryTraceGroup.hsrc/Field/tools/for_each_InteriorFieldTraceGroup_Cell.h5e0b9ec3a0b7dd914b8c0f65f104ffe3d67a6ce71537624698000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edufield and xfield instantiations in 4d 2018-09-22 09:58:18 -04005e0b9ec3a0b7dd914b8c0f65f104ffe3d67a6ce7field and xfield instantiations in 4deditsrc/Field/XFieldSpacetime.heditsrc/Field/tools/for_each_CellGroup.heditsrc/Field/tools/for_each_InteriorFieldTraceGroup.haddsrc/Field/XFieldVolume_Instantiate_4D.cppeditsrc/Field/tools/for_each_HubTraceGroup.heditsrc/Field/XFieldVolume_Traits.heditsrc/Field/tools/for_each_BoundaryTraceGroup.heditsrc/Field/CMakeLists.txtaddsrc/Field/FieldVolume_Instantiate_4D.cppeditsrc/Field/tools/for_each_InteriorFieldTraceGroup_Cell.heditsrc/Quadrature/Quadrature.heditsrc/Field/tools/for_each_InteriorTraceGroup_Cell.haddsrc/Field/FieldSpacetime_Instantiate_4D.cppsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cppsrc/BasisFunction/BasisFunctionSpacetime_Pentatope.cppc80b8c2ee3381a0a8b4e1a4544cca44c733c0d3b1537628343000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edumap between quadrature points of different trace orienations (in 4d) check for minimum distance 2018-09-22 10:59:03 -0400c80b8c2ee3381a0a8b4e1a4544cca44c733c0d3bmap between quadrature points of different trace orienations (in 4d) check for minimum distanceeditsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cppeditsrc/BasisFunction/BasisFunctionSpacetime_Pentatope.cpptest/sandbox/Adapt3D_Mesh_Optimizer_toy.cpp107f4dc77183efb72533f0f1405a6cf993d3f5541537629092000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edulingering space 2018-09-22 11:11:32 -0400107f4dc77183efb72533f0f1405a6cf993d3f554lingering spaceedittest/sandbox/Adapt3D_Mesh_Optimizer_toy.cpptest/unit/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange_btest.cppcb0fb98a048d8042abef39e2a98ad11bda7309a91537633833000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduunused variables...dont worry i'll unit test these functions 2018-09-22 12:30:33 -0400cb0fb98a048d8042abef39e2a98ad11bda7309a9unused variables...dont worry i'll unit test these functionsedittest/unit/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange_btest.cppsrc/BasisFunction/BasisFunctionSpacetime_Pentatope.cpp6e949ff9c50f0d7887805e12c05320358003e5ae1537636540000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduuninit fixes 2018-09-22 13:15:40 -04006e949ff9c50f0d7887805e12c05320358003e5aeuninit fixeseditsrc/BasisFunction/BasisFunctionSpacetime_Pentatope.cpptest/sandbox/Solve2D_DGBR2_Euler_Riemann_AV_RK_toy.cpp80610a62ed78a2141fc5f6a2da1ff24e14d4b87e1537730784000https://acdl.mit.edu/csi/user/blscblscblsc@mit.edu2D Riemann problem now uses surrogates 2018-09-23 15:26:24 -040080610a62ed78a2141fc5f6a2da1ff24e14d4b87e2D Riemann problem now uses surrogatesedittest/sandbox/Solve2D_DGBR2_Euler_Riemann_AV_RK_toy.cpptest/unit/UnitGrids/CMakeLists.txttest/unit/UnitGrids/XField2D_Box_Triangle_Ghost_X1.htest/unit/UnitGrids/XField2D_Box_Triangle_X1.cpptest/unit/UnitGrids/XField2D_Box_Triangle_Ghost_X1.cpptest/unit/UnitGrids/XField2D_Box_Triangle_Ghost_X1_btest.cppeb6ffc4bdcc5daa662f1eaf5ca7a5374b4456c901537801657000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduA box grid with two ghost boundaries 2018-09-24 11:07:37 -0400eb6ffc4bdcc5daa662f1eaf5ca7a5374b4456c90A box grid with two ghost boundariesedittest/unit/UnitGrids/CMakeLists.txtaddtest/unit/UnitGrids/XField2D_Box_Triangle_Ghost_X1.cppaddtest/unit/UnitGrids/XField2D_Box_Triangle_Ghost_X1.haddtest/unit/UnitGrids/XField2D_Box_Triangle_Ghost_X1_btest.cppedittest/unit/UnitGrids/XField2D_Box_Triangle_X1.cpptest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cpptest/unit/UnitGrids/XField2D_Box_Triangle_Ghost_X1.cppsrc/Field/XField_Local_Common.ha3d4d525a1f39ff2f1870ee7338bad7f1f208db21537805644000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduadded split tests with ghost boundaries attached to cell group 1, and made the assert message for cell group 0 a bit more obvious 2018-09-24 12:14:04 -0400a3d4d525a1f39ff2f1870ee7338bad7f1f208db2added split tests with ghost boundaries attached to cell group 1, and made the assert message for cell group 0 a bit more obviousedittest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cppeditsrc/Field/XField_Local_Common.hedittest/unit/UnitGrids/XField2D_Box_Triangle_Ghost_X1.cpptest/unit/UnitGrids/XField2D_Box_Triangle_Ghost_X1_btest.cpp6e3e2886b3908aaa333cec113de73fb40f09339f1537805743000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduduplicate test name 2018-09-24 12:15:43 -04006e3e2886b3908aaa333cec113de73fb40f09339fduplicate test nameedittest/unit/UnitGrids/XField2D_Box_Triangle_Ghost_X1_btest.cppsrc/Meshing/EGADS/EGBody.cppsrc/Meshing/EGTess/EGTriangle.cppsrc/Meshing/EGADS/EGBody.hsrc/Meshing/EGTess/CMakeLists.txtsrc/Meshing/EGADS/EGLoop.cppbb7e832f3df187a5f609d6ab42bb0e6f00f7f06b1537815887000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixes to EGADS loop senses when sense is +/-2 2018-09-24 15:04:47 -0400bb7e832f3df187a5f609d6ab42bb0e6f00f7f06bFixes to EGADS loop senses when sense is +/-2editsrc/Meshing/EGTess/EGTriangle.cppeditsrc/Meshing/EGADS/EGLoop.cppeditsrc/Meshing/EGADS/EGBody.cppeditsrc/Meshing/EGTess/CMakeLists.txteditsrc/Meshing/EGADS/EGBody.htest/unit/Meshing/EGADS/EGBody_btest.cpp5415674805a590c844e4adee49a84c23048fafec1537824694000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduForgot a file 2018-09-24 17:31:34 -04005415674805a590c844e4adee49a84c23048fafecForgot a fileedittest/unit/Meshing/EGADS/EGBody_btest.cpptest/unit/CMakeLists.txtsrc/BasisFunction/BasisFunctionSpacetime_Pentatope.cpptest/CMakeLists.txttest/system/CMakeLists.txt0317c39acae8171a7c0185c96eabd721ac5877fd1537830948000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed array out-of-bounds in Pentatope basis function. Fixed memcheck for nightly testing. 2018-09-24 19:15:48 -04000317c39acae8171a7c0185c96eabd721ac5877fdFixed array out-of-bounds in Pentatope basis function. Fixed memcheck for nightly testing.edittest/CMakeLists.txteditsrc/BasisFunction/BasisFunctionSpacetime_Pentatope.cppedittest/system/CMakeLists.txtedittest/unit/CMakeLists.txtsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixSymS.hsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_NavierStokes3D_PrimitiveConstVisc.cpptest/unit/LinearAlgebra/DenseLinAlg/MatrixS_btest.cppsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized.htest/system/IO/ErrorOrder/ErrorOrder_2D_CGStab_RANSSA_MMS2_FullTest.txtsrc/Adaptation/MOESS/NLOPT/MOESS_PX_Optimizer_NLOPT.cpptest/system/IO/ErrorOrder/ErrorOrder_2D_CGStab_RANSSA_MMS1_FullTest.txtsrc/Meshing/EGTess/EGTriangle.cppsrc/pde/NS/PDENavierStokes3D.hsrc/pde/NS/BCNavierStokes3D_mitState.hsrc/Discretization/CMakeLists.txtsrc/pde/NS/BCNavierStokes3D.hsrc/pde/NS/BCNavierStokes3D.cpptest/unit/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized_AD_btest.cppsrc/pde/NS/PDEEuler3D.hsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_InverseLUP_Surreal_Instantiate.cppsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cpptest/unit/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized_NS_btest.cpptest/unit/LinearAlgebra/DenseLinAlg/MatrixD_btest.cppsrc/Adaptation/MOESS/NLOPT/MOESS_Gradation_Optimizer_NLOPT.cpptest/unit/Discretization/Galerkin/StabilizationMatrix_NS_btest.cppsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_NavierStokes3D_PrimitiveConstVisc.cpptest/unit/Discretization/Galerkin/JacobianCell_Galerkin_Stabilized_NS_btest.cppsrc/Field/ElementConnectivityConstructor.htest/unit/BasisFunction/BasisFunctionArea_Quad_Lagrange_btest.cpptest/unit/pde/NS/BCNavierStokes3D_mitState_btest.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppsrc/Discretization/Galerkin/IntegrandCell_Galerkin_StrongForm.hsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS.htest/unit/pde/NS/PDEEuler3D_btest.cpptest/system/Asymptotic/ErrorEstimateOrder_2D_HDG_Triangle_AD_btest.cppsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.hsrc/Discretization/Galerkin/Stabilization_Galerkin.hsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Output_Stabilized.hsrc/LinearAlgebra/DenseLinAlg/InverseLUP.hsrc/Meshing/refine/MesherInterface_refine.cppsrc/pde/NS/BCNavierStokes2D.hsrc/ErrorEstimate/CMakeLists.txt244f564ce955bda0d83cc412f55da124c7e5de741537875390000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduSpeed improvement for stabilized CG. 3DNS isothermal wall BC. Many other small fixes 2018-09-25 07:36:30 -0400244f564ce955bda0d83cc412f55da124c7e5de74Speed improvement for stabilized CG. 3DNS isothermal wall BC. Many other small fixeseditsrc/Meshing/EGTess/EGTriangle.cppeditsrc/Adaptation/MOESS/NLOPT/MOESS_PX_Optimizer_NLOPT.cppeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppeditsrc/Adaptation/MOESS/NLOPT/MOESS_Gradation_Optimizer_NLOPT.cppedittest/unit/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized_NS_btest.cppedittest/unit/Discretization/Galerkin/JacobianCell_Galerkin_Stabilized_NS_btest.cppeditsrc/pde/NS/BCNavierStokes3D.heditsrc/Discretization/CMakeLists.txtedittest/unit/Discretization/Galerkin/StabilizationMatrix_NS_btest.cppeditsrc/pde/NS/PDEEuler3D.hedittest/system/Asymptotic/ErrorEstimateOrder_2D_HDG_Triangle_AD_btest.cppeditsrc/LinearAlgebra/DenseLinAlg/InverseLUP.hedittest/unit/pde/NS/BCNavierStokes3D_mitState_btest.cppaddsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_NavierStokes3D_PrimitiveConstVisc.cppeditsrc/Discretization/Galerkin/Stabilization_Galerkin.hedittest/unit/pde/NS/PDEEuler3D_btest.cppedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppeditsrc/Meshing/refine/MesherInterface_refine.cppeditsrc/Field/ElementConnectivityConstructor.hedittest/system/IO/ErrorOrder/ErrorOrder_2D_CGStab_RANSSA_MMS2_FullTest.txteditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.heditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_InverseLUP_Surreal_Instantiate.cppedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppedittest/unit/LinearAlgebra/DenseLinAlg/MatrixS_btest.cppeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixSymS.heditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_StrongForm.heditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized.hedittest/system/IO/ErrorOrder/ErrorOrder_2D_CGStab_RANSSA_MMS1_FullTest.txtaddsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_NavierStokes3D_PrimitiveConstVisc.cppeditsrc/pde/NS/BCNavierStokes2D.heditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS.hedittest/unit/BasisFunction/BasisFunctionArea_Quad_Lagrange_btest.cppedittest/unit/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized_AD_btest.cppeditsrc/pde/NS/BCNavierStokes3D.cppeditsrc/pde/NS/PDENavierStokes3D.heditsrc/pde/NS/BCNavierStokes3D_mitState.heditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Output_Stabilized.heditsrc/ErrorEstimate/CMakeLists.txtedittest/unit/LinearAlgebra/DenseLinAlg/MatrixD_btest.cpptest/unit/Discretization/Galerkin/JacobianCell_Galerkin_Stabilized_NS_btest.cppsrc/pde/NS/PDEEuler2D.hsrc/pde/NS/EulerResidCategory.hsrc/pde/NS/PDEEuler3D.hsrc/pde/NS/PDEEuler1D.hf25651b3abb95e499c3f5b33fd9c8cabac951f2f1537889479000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMore robust jacobian check for CG Stabilized NS 2018-09-25 11:31:19 -0400f25651b3abb95e499c3f5b33fd9c8cabac951f2fMore robust jacobian check for CG Stabilized NSedittest/unit/Discretization/Galerkin/JacobianCell_Galerkin_Stabilized_NS_btest.cppeditsrc/pde/NS/PDEEuler1D.heditsrc/pde/NS/PDEEuler2D.haddsrc/pde/NS/EulerResidCategory.heditsrc/pde/NS/PDEEuler3D.hsrc/Adaptation/MOESS/SolverInterface.hc0d3f6af00d769f46ea4d4d7291b3a93085e8b491537891562000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educhanged DOF sharing calculations to correctly use max, and to calculate the 3D sharing, assuming a regular icosahedron about a point 2018-09-25 12:06:02 -0400c0d3f6af00d769f46ea4d4d7291b3a93085e8b49changed DOF sharing calculations to correctly use max, and to calculate the 3D sharing, assuming a regular icosahedron about a pointeditsrc/Adaptation/MOESS/SolverInterface.htest/system/LocalSolve/EdgeLocalSolve2D_Primal_Galerkin_Stabilized_Triangle_AD_btest.cpp1142a87bcd7ea686d3f0a538febb7790ff7d5cd31537892606000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduRelaxed tolerance 2018-09-25 12:23:26 -04001142a87bcd7ea686d3f0a538febb7790ff7d5cd3Relaxed toleranceedittest/system/LocalSolve/EdgeLocalSolve2D_Primal_Galerkin_Stabilized_Triangle_AD_btest.cpptest/sandbox/Adapt1D_DGBR2_Line_Euler_SSMENozzle_toy.cpptest/sandbox/Adapt2D_DGBR2_Euler_GilesPierce_AV_toy.cpptest/sandbox/Adapt1D_DGBR2_Line_Euler_GilesPierce_toy.cpptest/sandbox/Adapt1D_DGBR2_AD_toy.cpp9f6c9b3638a1c83d65e8a2fa788a8f4f639786401537893561000https://acdl.mit.edu/csi/user/ursachiursachiursachi@mit.eduFixed adjoint order error 2018-09-25 12:39:21 -04009f6c9b3638a1c83d65e8a2fa788a8f4f63978640Fixed adjoint order errordeletetest/sandbox/Adapt1D_DGBR2_AD_toy.cppedittest/sandbox/Adapt1D_DGBR2_Line_Euler_GilesPierce_toy.cppedittest/sandbox/Adapt1D_DGBR2_Line_Euler_SSMENozzle_toy.cppedittest/sandbox/Adapt2D_DGBR2_Euler_GilesPierce_AV_toy.cpptest/system/Adaptation/SolverInterface_DGAdvective_btest.cpptest/system/Adaptation/SolverInterface_DGBR2_btest.cppe9db362750ac5551c5c41f63df316eedc61bb6d31537893593000https://acdl.mit.edu/csi/user/ursachiursachiursachi@mit.eduCheck if error estimates are the same after several iterations 2018-09-25 12:39:53 -0400e9db362750ac5551c5c41f63df316eedc61bb6d3Check if error estimates are the same after several iterationsedittest/system/Adaptation/SolverInterface_DGBR2_btest.cppedittest/system/Adaptation/SolverInterface_DGAdvective_btest.cpptest/system/IO/ErrorEstimates/ErrorEst_2D_DGAdvective_AD_FullTest.txttest/system/Asymptotic/ErrorEstimateOrder_2D_DGAdvective_Triangle_AD_btest.cpptest/system/IO/ErrorEstimates/ErrorEst_2D_DGAdvective_AD_MinTest.txtdbdfddaf268cd37e61ed831397606180ab48c76b1537893739000https://acdl.mit.edu/csi/user/ursachiursachiursachi@mit.edu2D DGAdv error estimate order test 2018-09-25 12:42:19 -0400dbdfddaf268cd37e61ed831397606180ab48c76b2D DGAdv error estimate order testedittest/system/IO/ErrorEstimates/ErrorEst_2D_DGAdvective_AD_MinTest.txtedittest/system/IO/ErrorEstimates/ErrorEst_2D_DGAdvective_AD_FullTest.txtedittest/system/Asymptotic/ErrorEstimateOrder_2D_DGAdvective_Triangle_AD_btest.cppsrc/Field/XFieldVolume_EdgeLocal.cppsrc/Field/XField_Local_Common_Instantiate_3D.cpptest/unit/Field/XField3D_EdgeLocal_Dual_Split_btest.cpp0aa240bfd301be62803b0a26d0f3144577c371731537902291000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumoved the hard work split method into the common instantiation 2018-09-25 15:04:51 -04000aa240bfd301be62803b0a26d0f3144577c37173moved the hard work split method into the common instantiationedittest/unit/Field/XField3D_EdgeLocal_Dual_Split_btest.cppeditsrc/Field/XFieldVolume_EdgeLocal.cppeditsrc/Field/XField_Local_Common_Instantiate_3D.cppsrc/Field/XField_Local_Common_Instantiate_2D.cppsrc/Field/XField_Local_Common_Instantiate_3D.cppsrc/Field/XFieldVolume_ElementLocal.cpp2d40d1b7699b0c446a343f0c44ae3e98ea3ef3071537905446000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edufixing up the 3D logic a little bit, the edge local still works, need to test the element dual now 2018-09-25 15:57:26 -04002d40d1b7699b0c446a343f0c44ae3e98ea3ef307fixing up the 3D logic a little bit, the edge local still works, need to test the element dual noweditsrc/Field/XField_Local_Common_Instantiate_3D.cppeditsrc/Field/XField_Local_Common_Instantiate_2D.cppeditsrc/Field/XFieldVolume_ElementLocal.cpptest/unit/Field/XField3D_ElementLocal_Dual_btest.cppc5e897a16d8e8ff0adc81712f0476a628480da451537907558000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduunsplit element dual tests 2018-09-25 16:32:38 -0400c5e897a16d8e8ff0adc81712f0476a628480da45unsplit element dual testsaddtest/unit/Field/XField3D_ElementLocal_Dual_btest.cppsrc/pde/NS/Q3DPrimitiveRhoPressure.hsrc/pde/NS/PDEEuler3D.hsrc/pde/NS/PDENavierStokes3D.h66f260309ab1656a0cea4bacd0ec1d66ed8a457d1537908181000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed warnings 2018-09-25 16:43:01 -040066f260309ab1656a0cea4bacd0ec1d66ed8a457dFixed warningseditsrc/pde/NS/Q3DPrimitiveRhoPressure.heditsrc/pde/NS/PDEEuler3D.heditsrc/pde/NS/PDENavierStokes3D.htest/unit/Field/XField3D_ElementLocal_Dual_Split_btest.cpp1f4a788336e4703cb83dc480ce5acbd33e7fa6321537909283000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edufirst, extremely basic split test 2018-09-25 17:01:23 -04001f4a788336e4703cb83dc480ce5acbd33e7fa632first, extremely basic split testaddtest/unit/Field/XField3D_ElementLocal_Dual_Split_btest.cpptest/unit/Field/XField3D_ElementLocal_Dual_Split_btest.cpptest/unit/Field/XField3D_ElementLocal_Dual_btest.cpp05be65f2e70ca9d8458f984263f316045426146a1537914234000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduanother simple split test, now with reattaching boundary groups attached to cell group 1 2018-09-25 18:23:54 -040005be65f2e70ca9d8458f984263f316045426146aanother simple split test, now with reattaching boundary groups attached to cell group 1edittest/unit/Field/XField3D_ElementLocal_Dual_Split_btest.cppedittest/unit/Field/XField3D_ElementLocal_Dual_btest.cpptest/unit/Field/XField3D_ElementLocal_Dual_Split_btest.cpptest/unit/Field/XField3D_ElementLocal_Dual_btest.cpp58cee918d49d4f83fd149a1d11e7f66f45115c781537915147000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduduplicate named tests 2018-09-25 18:39:07 -040058cee918d49d4f83fd149a1d11e7f66f45115c78duplicate named testsedittest/unit/Field/XField3D_ElementLocal_Dual_Split_btest.cppedittest/unit/Field/XField3D_ElementLocal_Dual_btest.cpptest/unit/Field/Field2D_ElementLocal_Dual_CG_btest.cpp536180bd1df0fb3eca2d4af884b931245024298f1537922265000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edusome tests for ElementDual Solution transfer, no surprises 2018-09-25 20:37:45 -0400536180bd1df0fb3eca2d4af884b931245024298fsome tests for ElementDual Solution transfer, no surprisesaddtest/unit/Field/Field2D_ElementLocal_Dual_CG_btest.cpptest/unit/Field/Field2D_ElementLocal_Dual_CG_btest.cppfb50556909d98057b54ba24f2c6c3a6cbc3a11f81537922666000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduduplicate test names 2018-09-25 20:44:26 -0400fb50556909d98057b54ba24f2c6c3a6cbc3a11f8duplicate test namesedittest/unit/Field/Field2D_ElementLocal_Dual_CG_btest.cppsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_backsolve.hsrc/LinearAlgebra/AlgebraicEquationSetBase.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_CRS_double.cppsrc/SolutionTrek/Continuation/Homotopy/AlgebraicEquationSet_HTC.hsrc/SolutionTrek/Continuation/PseudoTime/AlgebraicEquationSet_PTC.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized_LiftedBoundary.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_4x4_Instantiate.cppsrc/Discretization/HDG/AlgebraicEquationSet_HDG.hsrc/SolutionTrek/TimeMarching/AlgebraicEquationSet_TimeMarch.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_3x3_Instantiate.cppsrc/Discretization/Potential_Drela/AlgebraicEquationSet_CG_Potential_Drela.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_backsolve.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver.htest/unit/LinearAlgebra/Advection1D_btest.htest/unit/LinearAlgebra/CustomJacobianEqSet_btest.hsrc/LinearAlgebra/SparseLinAlg/LinearSolverBase.hsrc/Discretization/DG/AlgebraicEquationSet_DGBR2_impl.hsrc/SolutionTrek/TimeMarching/AlgebraicEquationSet_TimeStep.hsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_backsolve.hsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective_impl.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_Instantiate.cpptest/unit/NonLinearSolver/ScalarGoldenSearchLineUpdate_btest.cppsrc/Discretization/Galerkin/AlgebraicEquationSet_Project.hsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_CRS_double.cppsrc/SolutionTrek/Continuation/ImplicitResidualSmoothing/AlgebraicEquationSet_IRS.hsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver.cppsrc/LinearAlgebra/SparseLinAlg/SparseLinAlg_LinearSolver.htest/unit/NonLinearSolver/HalvingSearchLineUpdate_btest.cppsrc/Discretization/DG/AlgebraicEquationSet_DGBR2.hsrc/NonLinearSolver/NewtonSolver_impl.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized.hsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_CRS_MatrixD.cppsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_impl.hsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.hsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_CRS_MatrixD.cppsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_CRS_double.cppsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixS_Instantiate.cpptest/unit/LinearAlgebra/Heat1D_btest.htest/unit/NonLinearSolver/NewtonSolver_btest.cppsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver.hsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_factorize.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin.hsrc/SolutionTrek/Continuation/DissipationBased/AlgebraicEquationSet_DBC.hsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective.h2ac529a36379730a773d83e02260cde54c8f22ab1537930270000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduReworkd DOF sync so Newton syncs zombies. Linear solver timings 2018-09-25 22:51:10 -04002ac529a36379730a773d83e02260cde54c8f22abReworkd DOF sync so Newton syncs zombies. Linear solver timingseditsrc/LinearAlgebra/AlgebraicEquationSetBase.heditsrc/SolutionTrek/TimeMarching/AlgebraicEquationSet_TimeStep.heditsrc/LinearAlgebra/SparseLinAlg/LinearSolverBase.heditsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.heditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_CRS_double.cppeditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_Instantiate.cppedittest/unit/NonLinearSolver/NewtonSolver_btest.cppeditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_backsolve.heditsrc/Discretization/HDG/AlgebraicEquationSet_HDG.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_3x3_Instantiate.cppeditsrc/SolutionTrek/TimeMarching/AlgebraicEquationSet_TimeMarch.hedittest/unit/LinearAlgebra/Heat1D_btest.heditsrc/Discretization/Potential_Drela/AlgebraicEquationSet_CG_Potential_Drela.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixS_Instantiate.cppeditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_backsolve.heditsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective_impl.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin.heditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver.cppedittest/unit/LinearAlgebra/Advection1D_btest.heditsrc/SolutionTrek/Continuation/ImplicitResidualSmoothing/AlgebraicEquationSet_IRS.heditsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized_LiftedBoundary.heditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_impl.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_4x4_Instantiate.cppeditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_CRS_MatrixD.cppeditsrc/SolutionTrek/Continuation/PseudoTime/AlgebraicEquationSet_PTC.hedittest/unit/NonLinearSolver/ScalarGoldenSearchLineUpdate_btest.cppeditsrc/LinearAlgebra/SparseLinAlg/SparseLinAlg_LinearSolver.heditsrc/NonLinearSolver/NewtonSolver_impl.heditsrc/SolutionTrek/Continuation/DissipationBased/AlgebraicEquationSet_DBC.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_CRS_double.cppeditsrc/SolutionTrek/Continuation/Homotopy/AlgebraicEquationSet_HTC.heditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_CRS_double.cppeditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver.hedittest/unit/LinearAlgebra/CustomJacobianEqSet_btest.heditsrc/Discretization/DG/AlgebraicEquationSet_DGBR2_impl.hedittest/unit/NonLinearSolver/HalvingSearchLineUpdate_btest.cppeditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_CRS_MatrixD.cppeditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_backsolve.heditsrc/Discretization/DG/AlgebraicEquationSet_DGBR2.heditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver.heditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_factorize.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Project.hsrc/SolutionTrek/Continuation/ImplicitResidualSmoothing/AlgebraicEquationSet_IRS.hsrc/SolutionTrek/HarmonicBalance/AlgebraicEquationSet_HarmonicBalance.h4295299905fa6f9d1286048107e096564090d2c71537960858000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMissed one 2018-09-26 07:20:58 -04004295299905fa6f9d1286048107e096564090d2c7Missed oneeditsrc/SolutionTrek/Continuation/ImplicitResidualSmoothing/AlgebraicEquationSet_IRS.heditsrc/SolutionTrek/HarmonicBalance/AlgebraicEquationSet_HarmonicBalance.hsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver.hc89e874a345d98943114c94d48d20e59d591e76a1537962123000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduForgot to add timing variable for MKL_PARDISO 2018-09-26 07:42:03 -0400c89e874a345d98943114c94d48d20e59d591e76aForgot to add timing variable for MKL_PARDISOeditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver.hsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_impl.h3f2c020b4b6116ca3f1a248d0547819470563c2c1537962312000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduCopy pasta 2018-09-26 07:45:12 -04003f2c020b4b6116ca3f1a248d0547819470563c2cCopy pastaeditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_impl.hsrc/pde/AnalyticFunction/ScalarFunction3D.cppsrc/pde/AnalyticFunction/ScalarFunction2D.hsrc/pde/AnalyticFunction/ScalarFunction2D.cppsrc/pde/AnalyticFunction/ScalarFunction3D.hfb4e843a65c94c7c70280ee23b05d0ebd953f60e1537967699000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduadded scaling and offest to TripleBL and changed naming convention to match between 2D and 3D 2018-09-26 09:14:59 -0400fb4e843a65c94c7c70280ee23b05d0ebd953f60eadded scaling and offest to TripleBL and changed naming convention to match between 2D and 3Deditsrc/pde/AnalyticFunction/ScalarFunction3D.cppeditsrc/pde/AnalyticFunction/ScalarFunction3D.heditsrc/pde/AnalyticFunction/ScalarFunction2D.heditsrc/pde/AnalyticFunction/ScalarFunction2D.cpptest/unit/IO/pde/ScalarFunction2D_pattern.txtb183cdd421a50b21fc45c4fff3fd762706e4ef861537967719000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduforgot the pattern update 2018-09-26 09:15:19 -0400b183cdd421a50b21fc45c4fff3fd762706e4ef86forgot the pattern updateedittest/unit/IO/pde/ScalarFunction2D_pattern.txtsrc/ErrorEstimate/DG/ErrorEstimate_DGBR2_impl.htest/unit/Discretization/Galerkin/IntegrandBoundaryTrace_Output_Galerkin_btest.cppsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_Decompose_LUP.htest/unit/Discretization/Galerkin/JacobianFunctionalBoundaryTrace_WeightedResidual_Galerkin_btest.cppsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.hsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_Decompose_LUP_impl.hsrc/ErrorEstimate/DG/ErrorEstimate_DGBR2.hsrc/Discretization/Block/AlgebraicEquationSet_Block4x4.htest/unit/Discretization/DG/FunctionalBoundaryTrace_DGBR2_btest.cppCMakeLists.txttest/system/LocalSolve/ElementLocalSolve2D_DGBR2_Triangle_AD_btest.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AR_btest.cppsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_Inverse.htest/unit/Field/Field1D_EdgeLocal_Primal_DGBR2_btest.cpptest/system/LocalSolve/EdgeLocalSolve1D_Primal_DGBR2_Line_AD_btest.cpptest/sandbox/Solve2D_CG_NACABTE_IPTF_toy.cppsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.cppsrc/Discretization/Block/AlgebraicEquationSet_Block2x2.htest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cpptest/sandbox/Solve2D_CG_NACA_IPTF_linearsolve_toy.cpptest/sandbox/Solve2D_CG_NACA_LIP_toy.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_Euler_btest.cpptest/system/Asymptotic/ErrorEstimateOrder_2D_HDG_Triangle_AD_btest.cppsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.htest/unit/Discretization/DG/JacobianFunctionalBoundaryTrace_DGBR2_btest.cpptest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cpptest/unit/Discretization/Galerkin/IntegrandBoundaryTrace_Flux_mitState_Nitsche_AD_btest.cpptest/unit/Discretization/Galerkin/FunctionalBoundaryTrace_Dispatch_Galerkin_AD_btest.cpptest/unit/Discretization/Galerkin/IntegrandBoundaryTrace_Dirichlet_mitState_Galerkin_Euler_btest.cppCMakeInclude/CompilerFlags.cmakesrc/LinearAlgebra/AlgebraicEquationSetBase.hsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_Decompose_LU.hsrc/Discretization/Galerkin/JacobianFunctionalBoundaryTrace_WeightedResidual_Galerkin.htest/unit/Field/Field2D_ElementLocal_Dual_CG_btest.cpptest/system/LocalSolve/ElementLocalSolve3D_DGBR2_Tet_AD_btest.cpptest/unit/Field/Field1D_EdgeLocal_Dual_CG_btest.cppsrc/PanelMethod/XfoilPanelEquationSet.hCMakeInclude/Builds/BuildPETSC.cmaketest/system/LocalSolve/EdgeLocalSolve1D_Dual_Galerkin_Stabilized_Line_AD_btest.cpptest/unit/NonLinearSolver/HalvingSearchLineUpdate_btest.cppsrc/Discretization/FV_TPFA/AlgebraicEquationSet_FV_TPFA.hsrc/Discretization/DG/AlgebraicEquationSet_TransitionIBL.htest/system/LocalSolve/ElementLocalSolve3D_DGAdvective_Tet_AD_btest.cppCMakeInclude/StaticAnalysis.cmaketest/sandbox/Solve2D_CG_NACA_IPTF_toy.cpptest/system/LocalSolve/EdgeLocalSolve2D_Primal_DGBR2_Triangle_AD_btest.cppsrc/Discretization/Galerkin/Stabilization_Galerkin.htest/unit/Discretization/Galerkin/FunctionalBoundaryTrace_WeightedResidual_Galerkin_btest.cppsrc/ErrorEstimate/CMakeLists.txt52c3bd675f6bddcc4b4aa3cc889df8c3f61073de1537991812000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduNew parallel unit tests. Ghost/Zombie DOFs synced in Newton. PETSc build in external. Many small fixes. 2018-09-26 15:56:52 -040052c3bd675f6bddcc4b4aa3cc889df8c3f61073deNew parallel unit tests. Ghost/Zombie DOFs synced in Newton. PETSc build in external. Many small fixes.editsrc/ErrorEstimate/DG/ErrorEstimate_DGBR2.hedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AR_btest.cppaddsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.cppedittest/unit/Field/Field1D_EdgeLocal_Dual_CG_btest.cppeditCMakeInclude/CompilerFlags.cmakeedittest/sandbox/Solve2D_CG_NACA_IPTF_toy.cppedittest/unit/Discretization/Galerkin/IntegrandBoundaryTrace_Output_Galerkin_btest.cppeditsrc/Discretization/Galerkin/Stabilization_Galerkin.heditsrc/PanelMethod/XfoilPanelEquationSet.hedittest/sandbox/Solve2D_CG_NACA_IPTF_linearsolve_toy.cppedittest/unit/Field/Field2D_ElementLocal_Dual_CG_btest.cppedittest/system/LocalSolve/ElementLocalSolve3D_DGAdvective_Tet_AD_btest.cppeditsrc/Discretization/FV_TPFA/AlgebraicEquationSet_FV_TPFA.heditsrc/Discretization/Galerkin/JacobianFunctionalBoundaryTrace_WeightedResidual_Galerkin.hedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_Euler_btest.cppeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_Inverse.heditsrc/LinearAlgebra/AlgebraicEquationSetBase.hedittest/unit/NonLinearSolver/HalvingSearchLineUpdate_btest.cppeditsrc/Discretization/Block/AlgebraicEquationSet_Block4x4.hedittest/system/LocalSolve/EdgeLocalSolve1D_Primal_DGBR2_Line_AD_btest.cppeditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.hedittest/system/LocalSolve/EdgeLocalSolve2D_Primal_DGBR2_Triangle_AD_btest.cppeditsrc/Discretization/DG/AlgebraicEquationSet_TransitionIBL.hedittest/sandbox/Solve2D_CG_NACABTE_IPTF_toy.cppeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_Decompose_LUP_impl.hedittest/system/LocalSolve/EdgeLocalSolve1D_Dual_Galerkin_Stabilized_Line_AD_btest.cppedittest/unit/Discretization/Galerkin/FunctionalBoundaryTrace_Dispatch_Galerkin_AD_btest.cppeditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.heditCMakeInclude/StaticAnalysis.cmakeedittest/unit/Discretization/DG/FunctionalBoundaryTrace_DGBR2_btest.cppedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppedittest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cppedittest/unit/Discretization/Galerkin/IntegrandBoundaryTrace_Dirichlet_mitState_Galerkin_Euler_btest.cppeditsrc/Discretization/Block/AlgebraicEquationSet_Block2x2.hedittest/unit/Discretization/DG/JacobianFunctionalBoundaryTrace_DGBR2_btest.cppedittest/unit/Discretization/Galerkin/JacobianFunctionalBoundaryTrace_WeightedResidual_Galerkin_btest.cppedittest/sandbox/Solve2D_CG_NACA_LIP_toy.cppeditCMakeLists.txtedittest/system/LocalSolve/ElementLocalSolve3D_DGBR2_Tet_AD_btest.cppeditCMakeInclude/Builds/BuildPETSC.cmakeaddtest/unit/Discretization/Galerkin/FunctionalBoundaryTrace_WeightedResidual_Galerkin_btest.cppedittest/system/Asymptotic/ErrorEstimateOrder_2D_HDG_Triangle_AD_btest.cppeditsrc/ErrorEstimate/DG/ErrorEstimate_DGBR2_impl.hedittest/system/LocalSolve/ElementLocalSolve2D_DGBR2_Triangle_AD_btest.cppedittest/unit/Discretization/Galerkin/IntegrandBoundaryTrace_Flux_mitState_Nitsche_AD_btest.cppedittest/unit/Field/Field1D_EdgeLocal_Primal_DGBR2_btest.cppeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_Decompose_LU.heditsrc/ErrorEstimate/CMakeLists.txteditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_Decompose_LUP.hsrc/pde/NDConvert/PDENDConvertSpace2D.hsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion3D.hsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion3D.cppsrc/Field/XField_ElementLocal_impl.hsrc/pde/NDConvert/PDENDConvertSpace3D.h34bc1544b448c5a3d75e56e46edb681d9e0687f81537995258000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduvarious changes to get 3D adapting 2018-09-26 16:54:18 -040034bc1544b448c5a3d75e56e46edb681d9e0687f8various changes to get 3D adaptingeditsrc/pde/NDConvert/PDENDConvertSpace3D.heditsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion3D.heditsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion3D.cppeditsrc/pde/NDConvert/PDENDConvertSpace2D.heditsrc/Field/XField_ElementLocal_impl.htest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cpptest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppsrc/Adaptation/MOESS/SolverInterface.h5d6c6ebe2efd4eb43858f304d5a0959e371bc0401537995283000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edua 3D CG adaptation! 2018-09-26 16:54:43 -04005d6c6ebe2efd4eb43858f304d5a0959e371bc040a 3D CG adaptation!addtest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppedittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppeditsrc/Adaptation/MOESS/SolverInterface.htest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cpptest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cpp1c8585a881a5b2d4718271cbb529381a809bef731538001699000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educhanges to 3D case to run on hypersonic 2018-09-26 18:41:39 -04001c8585a881a5b2d4718271cbb529381a809bef73changes to 3D case to run on hypersonicedittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppedittest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppsrc/ErrorEstimate/ErrorEstimate_Common.h6c12849b0003af191212aed03a4d525b34501ed81538004272000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMissing include 2018-09-26 19:24:32 -04006c12849b0003af191212aed03a4d525b34501ed8Missing includeeditsrc/ErrorEstimate/ErrorEstimate_Common.htest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppde8a76e973a54ef7212481bfcba58ee1df6d49dd1538004993000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduto run a big case 2018-09-26 19:36:33 -0400de8a76e973a54ef7212481bfcba58ee1df6d49ddto run a big caseedittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppsrc/Meshing/EGTess/EGTessModel_aflr4.cpp0c0b0f8ce594134eda20d1737b6be7944579dd891538008899000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdates for latest AFLR patches 2018-09-26 20:41:39 -04000c0b0f8ce594134eda20d1737b6be7944579dd89Updates for latest AFLR patcheseditsrc/Meshing/EGTess/EGTessModel_aflr4.cppscripts/jenkins/jenkins_env.shee8eee10f000aced55279ceee264faa54fefd93d1538047466000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduCustom build of gcc 8.2 2018-09-27 07:24:26 -0400ee8eee10f000aced55279ceee264faa54fefd93dCustom build of gcc 8.2editscripts/jenkins/jenkins_env.shscripts/jenkins/jenkins_env.sh7e2ac0b7c24196b5013b99cec08810628f1e9b361538052926000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduJenkims env fix for gcc8 2018-09-27 08:55:26 -04007e2ac0b7c24196b5013b99cec08810628f1e9b36Jenkims env fix for gcc8editscripts/jenkins/jenkins_env.shtest/unit/SolutionTrek/TimeMarching/RK_btest.cpp9d9618aa4b657c985cbdde98cfcc5ea0e4cbf15c1538056505000https://acdl.mit.edu/csi/user/eam5515eam5515eam5515@psu.eduAdding new RK unit test 2018-09-27 09:55:05 -04009d9618aa4b657c985cbdde98cfcc5ea0e4cbf15cAdding new RK unit testedittest/unit/SolutionTrek/TimeMarching/RK_btest.cpptest/unit/SolutionTrek/TimeMarching/CMakeLists.txttest/unit/SolutionTrek/TimeMarching/RK_btest.cppb8f4cd171d19b96ae44ca4eb144a6bcd9d979b761538066126000https://acdl.mit.edu/csi/user/eam5515eam5515eam5515@psu.eduAdding Complete RK unit test and new CMake list 2018-09-27 12:35:26 -0400b8f4cd171d19b96ae44ca4eb144a6bcd9d979b76Adding Complete RK unit test and new CMake listedittest/unit/SolutionTrek/TimeMarching/RK_btest.cppedittest/unit/SolutionTrek/TimeMarching/CMakeLists.txtsrc/Meshing/EGTess/EGTessModel_aflr4.cppsrc/Meshing/EGTess/CMakeLists.txtaebea692d53c3c5be7cf72803d3f585c477ab7a51538076289000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAFLR4 now works. Need new library release. 2018-09-27 15:24:49 -0400aebea692d53c3c5be7cf72803d3f585c477ab7a5AFLR4 now works. Need new library release.editsrc/Meshing/EGTess/EGTessModel_aflr4.cppeditsrc/Meshing/EGTess/CMakeLists.txttest/unit/SolutionTrek/TimeMarching/CMakeLists.txttest/unit/SolutionTrek/TimeMarching/RK_btest.cpp62e5b02673b4deb037b0901ce9fce122954c82981538076324000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduCleanup RK Parallel Serial test. Have not found the bug yet. 2018-09-27 15:25:24 -040062e5b02673b4deb037b0901ce9fce122954c8298Cleanup RK Parallel Serial test. Have not found the bug yet.edittest/unit/SolutionTrek/TimeMarching/CMakeLists.txtedittest/unit/SolutionTrek/TimeMarching/RK_btest.cpptest/unit/SolutionTrek/TimeMarching/CMakeLists.txtsrc/SolutionTrek/TimeMarching/AlgebraicEquationSet_TimeStep.hsrc/Discretization/Galerkin/JacobianCell_Galerkin.htest/unit/SolutionTrek/TimeMarching/RK_btest.cpp45059e570dfa29452dabfe4ae125b899686fd8d41538086363000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixes so RK works with new parallel paritioning 2018-09-27 18:12:43 -040045059e570dfa29452dabfe4ae125b899686fd8d4Fixes so RK works with new parallel paritioningedittest/unit/SolutionTrek/TimeMarching/CMakeLists.txteditsrc/SolutionTrek/TimeMarching/AlgebraicEquationSet_TimeStep.heditsrc/Discretization/Galerkin/JacobianCell_Galerkin.hedittest/unit/SolutionTrek/TimeMarching/RK_btest.cppsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized.hCMakeInclude/Vera.cmakeb1b5be4350159004d16b03ffd00eadd9cf9284891538087197000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAssert Galerkin Stabilized PDE fluxViscousLinearInGradient. Add CMake option VERA_ERROR. 2018-09-27 18:26:37 -0400b1b5be4350159004d16b03ffd00eadd9cf928489Assert Galerkin Stabilized PDE fluxViscousLinearInGradient. Add CMake option VERA_ERROR.editCMakeInclude/Vera.cmakeeditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized.htest/unit/Field/XField2D_EdgeLocal_Dual_WholeGrids_btest.cpptest/unit/Field/XField3D_ElementLocal_Dual_WholeGrids_btest.cppsrc/Field/XField_Local_Common_Instantiate_3D.cppsrc/Adaptation/MOESS/ErrorModel.cpptest/unit/Field/XField2D_ElementLocal_Dual_WholeGrids_btest.cpptest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppsrc/Field/XFieldVolume_checkGrid_impl.htest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppsrc/Field/XFieldVolume_ElementLocal.cppeede71624d8d7b72874cb481923405bebef78e301538089873000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educommiting a bunch of non-working tests and the 3D CG case. 2018-09-27 19:11:13 -0400eede71624d8d7b72874cb481923405bebef78e30commiting a bunch of non-working tests and the 3D CG case.addtest/unit/Field/XField2D_ElementLocal_Dual_WholeGrids_btest.cppeditsrc/Adaptation/MOESS/ErrorModel.cppaddtest/unit/Field/XField2D_EdgeLocal_Dual_WholeGrids_btest.cppeditsrc/Field/XFieldVolume_ElementLocal.cppaddtest/unit/Field/XField3D_ElementLocal_Dual_WholeGrids_btest.cppeditsrc/Field/XFieldVolume_checkGrid_impl.hedittest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppeditsrc/Field/XField_Local_Common_Instantiate_3D.cppedittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppsrc/Meshing/EGTess/EGTessModel_aflr4.cppcdbcb3792b6dc83aaae8df0640e225636f217c2b1538100682000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMore updates for AFLR4 2018-09-27 22:11:22 -0400cdbcb3792b6dc83aaae8df0640e225636f217c2bMore updates for AFLR4editsrc/Meshing/EGTess/EGTessModel_aflr4.cppsrc/Field/Field_CG_CellConstructor.cppsrc/Field/Element/UniqueElem.htest/unit/pde/ShallowWater/ShallowWaterSolution2D_btest.cppsrc/Field/Element/UniqueElem.cppsrc/Field/Field_CG_Topology.cpptest/unit/pde/NS/GasModel_SurrealS1_btest.cppff5e7229a21ffa404495da58ecf41a49870a24481538193449000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduCG Field constructor minor speed improvements. Nightly tolerances. 2018-09-28 23:57:29 -0400ff5e7229a21ffa404495da58ecf41a49870a2448CG Field constructor minor speed improvements. Nightly tolerances.editsrc/Field/Field_CG_Topology.cppeditsrc/Field/Field_CG_CellConstructor.cppeditsrc/Field/Element/UniqueElem.cppeditsrc/Field/Element/UniqueElem.hedittest/unit/pde/NS/GasModel_SurrealS1_btest.cppedittest/unit/pde/ShallowWater/ShallowWaterSolution2D_btest.cppsrc/ErrorEstimate/ErrorEstimate_Common.hsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.hsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.hdae23cd1980bede9437a5866b6e9c1fbc250bd271538230272000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edurefactor to remove additional unneeded fields, should reduce the constructor destructor costs associated with ErrorEstimate 2018-09-29 10:11:12 -0400dae23cd1980bede9437a5866b6e9c1fbc250bd27refactor to remove additional unneeded fields, should reduce the constructor destructor costs associated with ErrorEstimateeditsrc/ErrorEstimate/ErrorEstimate_Common.heditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.heditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.hsrc/Field/Field_CG_TraceConstructor.cppsrc/Field/Field_CG_CellConstructor.cppsrc/Field/Field_CG_Topology.hsrc/Field/Field_CG_Topology.cpp5c7cd65074da6f1d345bcae037119d24f2dff7281538258066000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduImproved the speed of CG Field constructors. Should help local solves. 2018-09-29 17:54:26 -04005c7cd65074da6f1d345bcae037119d24f2dff728Improved the speed of CG Field constructors. Should help local solves.editsrc/Field/Field_CG_TraceConstructor.cppeditsrc/Field/Field_CG_Topology.heditsrc/Field/Field_CG_Topology.cppeditsrc/Field/Field_CG_CellConstructor.cppsrc/Field/Field_CG_TraceConstructor.cppsrc/Field/Field_CG_CellConstructor.cpp25caf7b7c6c6e2c73349446f4b3176b2f4a219251538259134000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMinor fixes 2018-09-29 18:12:14 -040025caf7b7c6c6e2c73349446f4b3176b2f4a21925Minor fixeseditsrc/Field/Field_CG_CellConstructor.cppeditsrc/Field/Field_CG_TraceConstructor.cppscripts/jenkins/jenkins_env.sh76453f65deb68ae7c2ea5d5527b49a719761f3431538324501000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpgraded cppcheck on reynolds 2018-09-30 12:21:41 -040076453f65deb68ae7c2ea5d5527b49a719761f343Upgraded cppcheck on reynoldseditscripts/jenkins/jenkins_env.shsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.hsrc/ErrorEstimate/Galerkin/ErrorEstimateCell_Galerkin.hsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.hfe160bc60d197c558fa620d7c380502b312bf74b1538328901000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduA few more minor speed improvements to Galerkin error estimates. 2018-09-30 13:35:01 -0400fe160bc60d197c558fa620d7c380502b312bf74bA few more minor speed improvements to Galerkin error estimates.editsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.heditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.heditsrc/ErrorEstimate/Galerkin/ErrorEstimateCell_Galerkin.hCMakeInclude/CompilerFlags.cmakesrc/Meshing/EGTess/XFieldDomain_impl.htest/sandbox/Adapt2D_Mesh_Optimizer_toy.cppsrc/Meshing/avro/MesherInterface_avro.cppsrc/Meshing/EGTess/XFieldDomain.cppsrc/Meshing/avro/CMakeLists.txttest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppsrc/Meshing/avro/MesherInterface_avro.hsrc/Meshing/EGTess/XFieldDomain.h4eec8e6745b7976578d7f6218fd650fea4a37a1c1538332899000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduxfielddomain fixes for avro api changes 2018-09-30 14:41:39 -04004eec8e6745b7976578d7f6218fd650fea4a37a1cxfielddomain fixes for avro api changeseditsrc/Meshing/EGTess/XFieldDomain.cppeditsrc/Meshing/avro/MesherInterface_avro.heditsrc/Meshing/EGTess/XFieldDomain.heditsrc/Meshing/avro/MesherInterface_avro.cppeditCMakeInclude/CompilerFlags.cmakeeditsrc/Meshing/avro/CMakeLists.txtedittest/sandbox/Adapt2D_Mesh_Optimizer_toy.cppeditsrc/Meshing/EGTess/XFieldDomain_impl.hedittest/sandbox/Adapt3D_Mesh_Optimizer_toy.cpptest/unit/Meshing/EGTess/XFieldDomain_btest.cpptest/unit/Meshing/avro/MesherInterface_avro_btest.cpp2e1717f417d92bb47d7afa0462cde99e2b56ea011538333667000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduunit test fixes for avro changes 2018-09-30 14:54:27 -04002e1717f417d92bb47d7afa0462cde99e2b56ea01unit test fixes for avro changesedittest/unit/Meshing/EGTess/XFieldDomain_btest.cppedittest/unit/Meshing/avro/MesherInterface_avro_btest.cppsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.cppsrc/Adaptation/MOESS/NodalMetrics.cpptest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppsrc/BasisFunction/BasisFunctionSpacetime.htest/unit/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange_btest.cppsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.h37243e20de99d4d2064101ecfcc89622b82983491538402339000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edusome unit testing on polytopes 2018-10-01 09:58:59 -040037243e20de99d4d2064101ecfcc89622b8298349some unit testing on polytopeseditsrc/BasisFunction/BasisFunctionSpacetime.heditsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.cppeditsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.hedittest/unit/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange_btest.cppeditsrc/Adaptation/MOESS/NodalMetrics.cppedittest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppsrc/Adaptation/MOESS/NodalMetrics.cpptest/sandbox/Adapt3D_Mesh_Optimizer_toy.cpp5541bb02ec175864f9ba542ae77424b45acba2301538412427000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edupush to mac for IMR 2018-10-01 12:47:07 -04005541bb02ec175864f9ba542ae77424b45acba230push to mac for IMReditsrc/Adaptation/MOESS/NodalMetrics.cppedittest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppsrc/Adaptation/MOESS/NodalMetrics.cpptest/unit/Adaptation/MOESS/NodalMetrics_btest.cpptest/unit/Adaptation/MOESS/ErrorModel_btest.cpptest/unit/Adaptation/MOESS/ImpliedMetric_Optimizer_NLOPT_btest.cpptest/unit/Adaptation/MOESS/MOESS_PX_Optimizer_NLOPT_btest.cpptest/unit/Adaptation/MOESS/MOESS_Gradation_Optimizer_NLOPT_btest_OFF.cpptest/unit/Adaptation/MOESS/MOESS_btest.cppc4f6d889c6f4c425ec5218d218b79ee2d4f0c95c1538413155000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed bug when parallelizing nodal metrics 2018-10-01 12:59:15 -0400c4f6d889c6f4c425ec5218d218b79ee2d4f0c95cFixed bug when parallelizing nodal metricsedittest/unit/Adaptation/MOESS/ErrorModel_btest.cppedittest/unit/Adaptation/MOESS/MOESS_btest.cppedittest/unit/Adaptation/MOESS/ImpliedMetric_Optimizer_NLOPT_btest.cppeditsrc/Adaptation/MOESS/NodalMetrics.cppedittest/unit/Adaptation/MOESS/MOESS_Gradation_Optimizer_NLOPT_btest_OFF.cppedittest/unit/Adaptation/MOESS/MOESS_PX_Optimizer_NLOPT_btest.cppedittest/unit/Adaptation/MOESS/NodalMetrics_btest.cppsrc/Field/Field_NodalView_Volume.cppsrc/Field/Field_NodalView_Area.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppc22f3d0c27e5f6ab9384a45215cb9d6b09423ba01538509086000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix for MultiScale metric 2018-10-02 15:38:06 -0400c22f3d0c27e5f6ab9384a45215cb9d6b09423ba0Fix for MultiScale metriceditsrc/Field/Field_NodalView_Volume.cppeditsrc/Field/Field_NodalView_Area.cppedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppsrc/ErrorEstimate/DG/ErrorEstimateCell_DGBR2.he60b0cbec13f2e2d6f444cecdad8a5d54cb9efb91538510561000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumoved integrand construction outside of loops for speed 2018-10-02 16:02:41 -0400e60b0cbec13f2e2d6f444cecdad8a5d54cb9efb9moved integrand construction outside of loops for speededitsrc/ErrorEstimate/DG/ErrorEstimateCell_DGBR2.hsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.cppsrc/ErrorEstimate/ErrorEstimate_Common.hsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.hdb48365abf6d660dfffa4527fd513199316e37621538516532000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educaught bug with assignment rather than accumulation 2018-10-02 17:42:12 -0400db48365abf6d660dfffa4527fd513199316e3762caught bug with assignment rather than accumulationeditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.cppeditsrc/ErrorEstimate/ErrorEstimate_Common.heditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.hsrc/ErrorEstimate/DG/ErrorEstimateInteriorTrace_DGBR2.h0bf31abaef380b3b673fb4445ee17cac5f110c131538516550000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduthat speed up didn't work.... 2018-10-02 17:42:30 -04000bf31abaef380b3b673fb4445ee17cac5f110c13that speed up didn't work....editsrc/ErrorEstimate/DG/ErrorEstimateInteriorTrace_DGBR2.hsrc/Field/XField_Local_Common_Instantiate_3D.cpptest/unit/Field/XField3D_ElementLocal_Dual_WholeGrids_btest.cppsrc/Field/Element/ElementAssociativityVolumeConstructor.cppsrc/Field/Element/ElementAssociativityVolumeConstructor.h2bc51df4494dc20c2afc081566789a35249609421538516611000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduadded get options for orientation, and caught bug with invalid split group 1 2018-10-02 17:43:31 -04002bc51df4494dc20c2afc081566789a3524960942added get options for orientation, and caught bug with invalid split group 1editsrc/Field/Element/ElementAssociativityVolumeConstructor.cppeditsrc/Field/XField_Local_Common_Instantiate_3D.cppeditsrc/Field/Element/ElementAssociativityVolumeConstructor.hedittest/unit/Field/XField3D_ElementLocal_Dual_WholeGrids_btest.cpptest/unit/Field/XField3D_ElementLocal_Dual_WholeGrids_btest.cpp5c994711150b21fdbba107e86466addab77069011538571814000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduadded a check to see if element is owned by local processor 2018-10-03 09:03:34 -04005c994711150b21fdbba107e86466addab7706901added a check to see if element is owned by local processoredittest/unit/Field/XField3D_ElementLocal_Dual_WholeGrids_btest.cpptest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppa3dc3f7f123f2e2e4be0dd64d8816657f26ce9d21538571883000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduunused variable 2018-10-03 09:04:43 -0400a3dc3f7f123f2e2e4be0dd64d8816657f26ce9d2unused variableedittest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppscripts/jenkins/jenkins_env.shsrc/Field/Element/UniqueElem.hfc8c40083183fd4a9304a75765b3700098ec233c1538576377000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduSuppress cppcheck 2018-10-03 10:19:37 -0400fc8c40083183fd4a9304a75765b3700098ec233cSuppress cppcheckeditscripts/jenkins/jenkins_env.sheditsrc/Field/Element/UniqueElem.htest/unit/Field/XField3D_ElementLocal_Dual_btest.cpp766874660542e020e3f2d905e3e65dd8bea11ad71538580031000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduanother unit test 2018-10-03 11:20:31 -0400766874660542e020e3f2d905e3e65dd8bea11ad7another unit testedittest/unit/Field/XField3D_ElementLocal_Dual_btest.cppsrc/Adaptation/MOESS/NodalMetrics.cppsrc/Adaptation/MOESS/NodalMetrics.hsrc/Adaptation/MOESS/MOESS.hsrc/Adaptation/MOESS/ProblemStatement_HDG_ErrorEstimate.hsrc/Adaptation/MOESS/MOESS.cppsrc/Adaptation/MOESS/SolverInterface_DGBR2_Block2x2.hsrc/Adaptation/MOESS/CostModel_LogEuclidean.hd0485b55863ccbebcc1ea2a28f7141ed4b247d401538604375000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded requested element print out. Fixed int for computing cost. 2018-10-03 18:06:15 -0400d0485b55863ccbebcc1ea2a28f7141ed4b247d40Added requested element print out. Fixed int for computing cost.editsrc/Adaptation/MOESS/MOESS.heditsrc/Adaptation/MOESS/NodalMetrics.heditsrc/Adaptation/MOESS/SolverInterface_DGBR2_Block2x2.heditsrc/Adaptation/MOESS/CostModel_LogEuclidean.heditsrc/Adaptation/MOESS/MOESS.cppeditsrc/Adaptation/MOESS/NodalMetrics.cppeditsrc/Adaptation/MOESS/ProblemStatement_HDG_ErrorEstimate.htest/unit/Field/XField3D_ElementLocal_Dual_Split_btest.cppsrc/Field/XField_ElementLocal_impl.hsrc/Field/XFieldArea_ElementLocal.cppsrc/Field/XFieldVolume_ElementLocal.cppe66da382cb1518e8c4523bd3775b7468d08f2fea1538606056000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edusome more unit tests and caught a bug 2018-10-03 18:34:16 -0400e66da382cb1518e8c4523bd3775b7468d08f2feasome more unit tests and caught a bugeditsrc/Field/XFieldVolume_ElementLocal.cppeditsrc/Field/XField_ElementLocal_impl.hedittest/unit/Field/XField3D_ElementLocal_Dual_Split_btest.cppeditsrc/Field/XFieldArea_ElementLocal.cppsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixS_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_impl.hsrc/Adaptation/MOESS/NLOPT/MOESS_PX_Optimizer_NLOPT.cppsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_CRS_double.cppCMakeInclude/Builds/BuildPETSC.cmakesrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver.hsrc/Field/Field_CG_Topology.hsrc/Field/Field_CG_Topology.cpp25f0ce0ccdf451696dc05d684f5417bfde2ba5171538617575000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduBetter CG load balancing. PETSc BAIJ works for processors with no DOF possessions 2018-10-03 21:46:15 -040025f0ce0ccdf451696dc05d684f5417bfde2ba517Better CG load balancing. PETSc BAIJ works for processors with no DOF possessionseditsrc/Adaptation/MOESS/NLOPT/MOESS_PX_Optimizer_NLOPT.cppeditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_CRS_double.cppeditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixS_Instantiate.cppeditCMakeInclude/Builds/BuildPETSC.cmakeeditsrc/Field/Field_CG_Topology.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver.heditsrc/Field/Field_CG_Topology.cppeditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_impl.hsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.cpp91cad1216dc78cec6c33e8793ef05134761bf0341538618893000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix for error estimate nodal outputField 2018-10-03 22:08:13 -040091cad1216dc78cec6c33e8793ef05134761bf034Fix for error estimate nodal outputFieldeditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.cpptest/unit/IO/pde/ScalarFunction2D_pattern.txtsrc/pde/AnalyticFunction/ScalarFunction3D.cppsrc/pde/AnalyticFunction/ScalarFunction2D.cppsrc/pde/AnalyticFunction/ScalarFunction2D.hsrc/pde/AnalyticFunction/ScalarFunction3D.htest/unit/pde/AnalyticFunction/ScalarFunction2D_btest.cpp45d43f7d30cc759ca9fc832d15d3a6d56fab84e61538662527000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduadded dictionary options for SineSineSine 2018-10-04 10:15:27 -040045d43f7d30cc759ca9fc832d15d3a6d56fab84e6added dictionary options for SineSineSineeditsrc/pde/AnalyticFunction/ScalarFunction2D.cppeditsrc/pde/AnalyticFunction/ScalarFunction2D.heditsrc/pde/AnalyticFunction/ScalarFunction3D.heditsrc/pde/AnalyticFunction/ScalarFunction3D.cppedittest/unit/pde/AnalyticFunction/ScalarFunction2D_btest.cppedittest/unit/IO/pde/ScalarFunction2D_pattern.txtsrc/Adaptation/MOESS/NodalMetrics.cppsrc/Adaptation/MOESS/SolverInterface_DGBR2_Block2x2.hsrc/Adaptation/MOESS/SolverInterface.hsrc/Adaptation/MOESS/CostModel_LogEuclidean.hsrc/Adaptation/MOESS/ProblemStatement_HDG_ErrorEstimate.h921738274601546f0ecc9991d4d06bbda0e431921538662543000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduhunting some int casts 2018-10-04 10:15:43 -0400921738274601546f0ecc9991d4d06bbda0e43192hunting some int castseditsrc/Adaptation/MOESS/NodalMetrics.cppeditsrc/Adaptation/MOESS/SolverInterface_DGBR2_Block2x2.heditsrc/Adaptation/MOESS/SolverInterface.heditsrc/Adaptation/MOESS/ProblemStatement_HDG_ErrorEstimate.heditsrc/Adaptation/MOESS/CostModel_LogEuclidean.htest/unit/pde/AnalyticFunction/ScalarFunction3D_btest.cppe54cb8bd7b32acd6c7804977eb54f4b79d7c4d091538662869000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edubumping that coverage up 2018-10-04 10:21:09 -0400e54cb8bd7b32acd6c7804977eb54f4b79d7c4d09bumping that coverage upedittest/unit/pde/AnalyticFunction/ScalarFunction3D_btest.cpptest/system/LocalSolve/ElementDualLocalSolve3D_Galerkin_Stabilized_Triangle_AD_btest.cppd440f7effb9b1e053e34822e83805636f73e50c21538663432000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edu3D Element Dual test 2018-10-04 10:30:32 -0400d440f7effb9b1e053e34822e83805636f73e50c23D Element Dual testaddtest/system/LocalSolve/ElementDualLocalSolve3D_Galerkin_Stabilized_Triangle_AD_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_iter_TurbWake_btest.cppsrc/pde/IBL/SetTransitionFrontIBL2D_InteriorTraceGroup.hsrc/pde/IBL/SetIBLtransitionFrontCellGroup.h07cf961e6278f16da24e1dce1b404648250d8a371538665938000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduUpdated printout format 2018-10-04 11:12:18 -040007cf961e6278f16da24e1dce1b404648250d8a37Updated printout formateditsrc/pde/IBL/SetTransitionFrontIBL2D_InteriorTraceGroup.heditsrc/pde/IBL/SetIBLtransitionFrontCellGroup.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_iter_TurbWake_btest.cpptest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cppc84ee1610d78a95e6a07ff0b2be209c45daebe3e1538668119000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edutweak 2018-10-04 11:48:39 -0400c84ee1610d78a95e6a07ff0b2be209c45daebe3etweakedittest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppsrc/pde/NS/OutputEuler3D.h9283b5f8843f4a2a324b61ee7bf3f7d5dff115c81538676140000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded mach output functional for DeltaWing 2018-10-04 14:02:20 -04009283b5f8843f4a2a324b61ee7bf3f7d5dff115c8Added mach output functional for DeltaWingedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppeditsrc/pde/NS/OutputEuler3D.htest/unit/pde/AnalyticFunction/CMakeLists.txttest/unit/pde/ArtificialViscosity/CMakeLists.txttest/unit/pde/AdvectionDiffusion/CMakeLists.txttest/unit/pde/FullPotential/CMakeLists.txttest/unit/pde/HSM/CMakeLists.txttest/unit/pde/ShallowWater/CMakeLists.txttest/unit/Discretization/FV_TPFA/CMakeLists.txtCMakeLists.txttest/unit/pde/CauchyRiemann/CMakeLists.txttest/unit/CMakeLists.txttest/unit/Meshing/Metric/CMakeLists.txttest/unit/pde/PorousMedia/CMakeLists.txttest/unit/pde/Sensor/CMakeLists.txttest/unit/Quaternion/CMakeLists.txttest/unit/pde/NDConvert/CMakeLists.txttest/unit/pde/Burgers/CMakeLists.txttest/unit/pde/Distance/CMakeLists.txttest/unit/pde/NS/CMakeLists.txttest/unit/pde/IBL/CMakeLists.txttest/unit/Discretization/Galerkin/CMakeLists.txteb5f2f8b9bc077b66044767fbf8925f23336662e1538742229000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduStarted to rework cmake folder test names 2018-10-05 08:23:49 -0400eb5f2f8b9bc077b66044767fbf8925f23336662eStarted to rework cmake folder test namesedittest/unit/pde/AnalyticFunction/CMakeLists.txtedittest/unit/pde/NS/CMakeLists.txtedittest/unit/Discretization/FV_TPFA/CMakeLists.txtedittest/unit/pde/ShallowWater/CMakeLists.txtedittest/unit/pde/NDConvert/CMakeLists.txtedittest/unit/pde/Sensor/CMakeLists.txteditCMakeLists.txtedittest/unit/CMakeLists.txtedittest/unit/Meshing/Metric/CMakeLists.txtedittest/unit/pde/HSM/CMakeLists.txtedittest/unit/Quaternion/CMakeLists.txtedittest/unit/pde/Burgers/CMakeLists.txtedittest/unit/Discretization/Galerkin/CMakeLists.txtedittest/unit/pde/Distance/CMakeLists.txtedittest/unit/pde/ArtificialViscosity/CMakeLists.txtedittest/unit/pde/PorousMedia/CMakeLists.txtedittest/unit/pde/FullPotential/CMakeLists.txtedittest/unit/pde/AdvectionDiffusion/CMakeLists.txtedittest/unit/pde/IBL/CMakeLists.txtedittest/unit/pde/CauchyRiemann/CMakeLists.txttest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cppf4b35298a40aab7d9d74c7be9dfbcf7375c954b51538755815000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduforgot a dictionary 2018-10-05 12:10:15 -0400f4b35298a40aab7d9d74c7be9dfbcf7375c954b5forgot a dictionaryedittest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppf5f05808dc4f8f2364c63751816886f3e3f8c5eb1538795827000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded mach field dump for MOESS delta wing 2018-10-05 23:17:07 -0400f5f05808dc4f8f2364c63751816886f3e3f8c5ebAdded mach field dump for MOESS delta wingedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cpptest/unit/CMakeLists.txttest/system/CMakeLists.txt7ae01df43f4f8ba1c017ed83ed33172de6ea14df1538870930000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduNew folder test names. We can revert/modify if they are awkward 2018-10-06 20:08:50 -04007ae01df43f4f8ba1c017ed83ed33172de6ea14dfNew folder test names. We can revert/modify if they are awkwardedittest/system/CMakeLists.txtedittest/unit/CMakeLists.txttest/unit/CMakeLists.txttest/unit/Discretization/Block/CMakeLists.txttest/system/CMakeLists.txttest/unit/Field/Element/CMakeLists.txt2faebb8c2f9535e79eef652f4fc87e00984600bb1538882579000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMissed XDIR related things 2018-10-06 23:22:59 -04002faebb8c2f9535e79eef652f4fc87e00984600bbMissed XDIR related thingsedittest/system/CMakeLists.txtedittest/unit/CMakeLists.txtedittest/unit/Discretization/Block/CMakeLists.txtedittest/unit/Field/Element/CMakeLists.txttest/sandbox/deformationTime.dattest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_Poisson_toy.cpptest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cpp424d79fa7c17906aea4b133224d1df72cd60d9b31538956704000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edudictionary fixes and parameter tweaks 2018-10-07 19:58:24 -0400424d79fa7c17906aea4b133224d1df72cd60d9b3dictionary fixes and parameter tweaksedittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppaddtest/sandbox/deformationTime.datedittest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppedittest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_Poisson_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_Poisson_toy.cpptest/sandbox/Adapt2D_DGBR2_Poisson_toy.cppcf4dab592b7084bd48a606be75db8b8ef01175141538959424000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumore dictionary fixes 2018-10-07 20:43:44 -0400cf4dab592b7084bd48a606be75db8b8ef0117514more dictionary fixesedittest/sandbox/Adapt2D_Galerkin_Stabilized_Poisson_toy.cppedittest/sandbox/Adapt2D_DGBR2_Poisson_toy.cppsrc/Meshing/gmsh/XField_gmsh.hsrc/Meshing/gmsh/XField_gmsh.cpptest/unit/Meshing/gmsh/XField_gmsh_btest.cpptest/unit/IO/Meshes/periodicBox_gmsh.msh10c62f89ce7dffb79af1cd4bfe3d2b305125e5a81538967167000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduPeriodic boundary support for gmsh reader 2018-10-07 22:52:47 -040010c62f89ce7dffb79af1cd4bfe3d2b305125e5a8Periodic boundary support for gmsh readeredittest/unit/Meshing/gmsh/XField_gmsh_btest.cppeditsrc/Meshing/gmsh/XField_gmsh.heditsrc/Meshing/gmsh/XField_gmsh.cppaddtest/unit/IO/Meshes/periodicBox_gmsh.mshtest/system/LocalSolve/ElementDualLocalSolve3D_Galerkin_Stabilized_Triangle_AD_btest.cppfe74e54adcc91b1b80aa264d0fa9362821ad71a21539006457000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edureduced test size 2018-10-08 09:47:37 -0400fe74e54adcc91b1b80aa264d0fa9362821ad71a2reduced test sizeedittest/system/LocalSolve/ElementDualLocalSolve3D_Galerkin_Stabilized_Triangle_AD_btest.cppsrc/Meshing/refine/MesherInterface_refine.cppsrc/Meshing/refine/XField3D_refine.cpptest/unit/Meshing/refine/refine3D_btest.cpp1f01a24f1ac6be63e929a26c91b1640207773df21539039525000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdates so refine might work in parallel 2018-10-08 18:58:45 -04001f01a24f1ac6be63e929a26c91b1640207773df2Updates so refine might work in paralleledittest/unit/Meshing/refine/refine3D_btest.cppeditsrc/Meshing/refine/MesherInterface_refine.cppeditsrc/Meshing/refine/XField3D_refine.cppCMakeInclude/Checks/ref_fortran.cCMakeInclude/Checks/CheckREFINE.cmakeCMakeInclude/Checks/ref_check.c603c84f1c6494cef0536d15e41d6bc87472750581539042348000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdated refine check with cmake 2018-10-08 19:45:48 -0400603c84f1c6494cef0536d15e41d6bc8747275058Updated refine check with cmakeaddCMakeInclude/Checks/ref_check.ceditCMakeInclude/Checks/CheckREFINE.cmakedeleteCMakeInclude/Checks/ref_fortran.ctest/system/LocalSolve/ElementDualLocalSolve3D_Galerkin_Stabilized_Triangle_AD_btest.cpp075fb805e54fb5b1113f077644afc6375250077d1539092820000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edushortened test again... 2018-10-09 09:47:00 -0400075fb805e54fb5b1113f077644afc6375250077dshortened test again...edittest/system/LocalSolve/ElementDualLocalSolve3D_Galerkin_Stabilized_Triangle_AD_btest.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cpp0f3a336c51f651e6947a1af89fab62161e84894f1539112630000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixes for DeltaWing to dump mach field 2018-10-09 15:17:10 -04000f3a336c51f651e6947a1af89fab62161e84894fFixes for DeltaWing to dump mach fieldedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cpptest/sandbox/deformationTime.dat.gitignore23e21875de9ddf4e8647345957a24d875f2ad31c1539112774000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduRemoved deformationTime.dat 2018-10-09 15:19:34 -040023e21875de9ddf4e8647345957a24d875f2ad31cRemoved deformationTime.datedit.gitignoredeletetest/sandbox/deformationTime.dattest/unit/LinearAlgebra/TriDiagPattern_btest.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_CRS_double.cppCMakeInclude/Checks/ref_check.csrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized.hsrc/NonLinearSolver/NewtonSolver_impl.hsrc/pde/AnalyticFunction/ScalarFunction3D.cppsrc/Meshing/gmsh/XField_gmsh.cpptest/unit/Meshing/refine/CMakeLists.txtsrc/pde/AnalyticFunction/ScalarFunction3D.hsrc/Adaptation/MOESS/SolverInterface_DGBR2.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_impl.htest/unit/LinearAlgebra/SparseLinAlg/PETSc/PETSc_btest.cppsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixS_Instantiate.cppsrc/Adaptation/MOESS/SolverInterface_DGAdvective.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_backsolve.htest/unit/LinearAlgebra/Heat1D_btest.hsrc/Adaptation/MOESS/SolverInterface_Galerkin.htest/unit/LinearAlgebra/Advection1D_btest.htest/unit/Meshing/refine/refine3D_btest.cppsrc/Adaptation/MOESS/SolverInterface_DGBR2_Block2x2.hsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective.hsrc/Meshing/refine/MesherInterface_refine.cppsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective_impl.hc1c069af8b905b13b2845d1f59c1cdb4798549741539113036000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduPETSc uses x as initial guess. Use P-Adjoint as initial P+1-Adjoing with Galerkin. Other cleanups. 2018-10-09 15:23:56 -0400c1c069af8b905b13b2845d1f59c1cdb479854974PETSc uses x as initial guess. Use P-Adjoint as initial P+1-Adjoing with Galerkin. Other cleanups.editsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_CRS_double.cppeditsrc/pde/AnalyticFunction/ScalarFunction3D.heditsrc/Adaptation/MOESS/SolverInterface_DGBR2.hedittest/unit/Meshing/refine/CMakeLists.txteditsrc/Adaptation/MOESS/SolverInterface_DGAdvective.heditCMakeInclude/Checks/ref_check.ceditsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized.heditsrc/Adaptation/MOESS/SolverInterface_Galerkin.hedittest/unit/Meshing/refine/refine3D_btest.cppeditsrc/Adaptation/MOESS/SolverInterface_DGBR2_Block2x2.heditsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective.heditsrc/pde/AnalyticFunction/ScalarFunction3D.cppedittest/unit/LinearAlgebra/Advection1D_btest.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_impl.heditsrc/Meshing/gmsh/XField_gmsh.cppedittest/unit/LinearAlgebra/SparseLinAlg/PETSc/PETSc_btest.cppeditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixS_Instantiate.cppeditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_backsolve.heditsrc/Meshing/refine/MesherInterface_refine.cppedittest/unit/LinearAlgebra/TriDiagPattern_btest.heditsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective_impl.heditsrc/NonLinearSolver/NewtonSolver_impl.hedittest/unit/LinearAlgebra/Heat1D_btest.htest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cpp969d468ec21a9897332c2d55dcbd6b10f2a2c2cf1539114355000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduClean up adjoint solve for DeltaWing 2018-10-09 12:45:55 -0700969d468ec21a9897332c2d55dcbd6b10f2a2c2cfClean up adjoint solve for DeltaWingedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppsrc/Meshing/EPIC/MesherInterface_Epic.cpptest/unit/Meshing/refine/CMakeLists.txt3c945720acf7ba9aea2381d2755b1fb9f6b5e4851539114435000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduDon't run refine in parallel yet 2018-10-09 15:47:15 -04003c945720acf7ba9aea2381d2755b1fb9f6b5e485Don't run refine in parallel yetedittest/unit/Meshing/refine/CMakeLists.txteditsrc/Meshing/EPIC/MesherInterface_Epic.cpptest/system/LocalSolve/ElementDualLocalSolve3D_Galerkin_Stabilized_Triangle_AD_btest.cpp3ded3e0d7f8bebf14f61da80b4a35d50cf6cba7f1539119640000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educhanging to unstabilized for testing 2018-10-09 17:14:00 -04003ded3e0d7f8bebf14f61da80b4a35d50cf6cba7fchanging to unstabilized for testingedittest/system/LocalSolve/ElementDualLocalSolve3D_Galerkin_Stabilized_Triangle_AD_btest.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/deformationTime.dat1882b9f1387e81d9ccbacba5675c2dd987910a541539119731000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edutweaks and removing an unintended file 2018-10-09 17:15:31 -04001882b9f1387e81d9ccbacba5675c2dd987910a54tweaks and removing an unintended fileedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppdeletetest/sandbox/deformationTime.datsrc/Adaptation/MeshAdapter.htest/sandbox/Adapt2D_DGBR2_RANSSA_FlatPlate_toy.cppc2ada69e05b0d5cd3e7c777cc3db159ed13be2f61539119769000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edubasic scheduler and timing dumps at the end of test adapthist 2018-10-09 17:16:09 -0400c2ada69e05b0d5cd3e7c777cc3db159ed13be2f6basic scheduler and timing dumps at the end of test adapthisteditsrc/Adaptation/MeshAdapter.hedittest/sandbox/Adapt2D_DGBR2_RANSSA_FlatPlate_toy.cppsrc/Meshing/gmsh/XField_gmsh.hsrc/Meshing/gmsh/XField_gmsh.cpptest/unit/Meshing/gmsh/XField_gmsh_btest.cpp201bd99aaa65f439848c954df38e1280047d93f51539135292000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduPeriodic gmsh fix for parallel 2018-10-09 21:34:52 -0400201bd99aaa65f439848c954df38e1280047d93f5Periodic gmsh fix for paralleleditsrc/Meshing/gmsh/XField_gmsh.cppedittest/unit/Meshing/gmsh/XField_gmsh_btest.cppeditsrc/Meshing/gmsh/XField_gmsh.htest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppbffc4e3da13d23974daa87b874ab90b127e2f2281539178297000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumoving box 2018-10-10 09:31:37 -0400bffc4e3da13d23974daa87b874ab90b127e2f228moving boxedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppsrc/Discretization/Galerkin/Stabilization_Galerkin.htest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/unit/Field/Element/ElementProjection_L2_Triangle_btest.cpptest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cpptest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cpptest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppd7a24bad30fd3eee396b51d1b2f5a4410d1a2bae1539179031000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumend 2018-10-10 09:43:51 -0400d7a24bad30fd3eee396b51d1b2f5a4410d1a2baemendeditsrc/Discretization/Galerkin/Stabilization_Galerkin.hedittest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppedittest/unit/Field/Element/ElementProjection_L2_Triangle_btest.cppedittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppedittest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cppsrc/Adaptation/MOESS/ErrorModel.cpptest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cpptest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cpptest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppe77d261ca0a6fe10fa510896c8fa1f9f0bac1c041539186909000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumoving box 2018-10-10 11:55:09 -0400e77d261ca0a6fe10fa510896c8fa1f9f0bac1c04moving boxedittest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppeditsrc/Adaptation/MOESS/ErrorModel.cppedittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppedittest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cpptest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppf583c9d72bd1550feeb14fd1d7aea7c74bc2c7b11539187506000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduforgot to allow PETSC 2018-10-10 12:05:06 -0400f583c9d72bd1550feeb14fd1d7aea7c74bc2c7b1forgot to allow PETSCedittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cpptest/unit/LinearAlgebra/SparseLinAlg/PETSc/PETSc_btest.cppsrc/Field/XField_checkTraceNormal_impl.htest/unit/Discretization/Galerkin/JacobianFunctionalCell_Galerkin_btest.cppsrc/Discretization/Galerkin/JacobianFunctionalCell_Galerkin.htest/unit/Discretization/Galerkin/JacobianCell_Galerkin_Stabilized_NS_btest.cppsrc/pde/NS/PDEEuler3D.hsrc/Discretization/Galerkin/JacobianFunctionalBoundaryTrace_Galerkin.h9bf65435a1509ce85229bfea0f191dbeb413acfb1539190685000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduJacobianFunctionalCell_Galerkin now works in parallel. Other small fixes. 2018-10-10 12:58:05 -04009bf65435a1509ce85229bfea0f191dbeb413acfbJacobianFunctionalCell_Galerkin now works in parallel. Other small fixes.editsrc/Discretization/Galerkin/JacobianFunctionalCell_Galerkin.heditsrc/pde/NS/PDEEuler3D.hedittest/unit/LinearAlgebra/SparseLinAlg/PETSc/PETSc_btest.cppeditsrc/Field/XField_checkTraceNormal_impl.hedittest/unit/Discretization/Galerkin/JacobianFunctionalCell_Galerkin_btest.cppeditsrc/Discretization/Galerkin/JacobianFunctionalBoundaryTrace_Galerkin.hedittest/unit/Discretization/Galerkin/JacobianCell_Galerkin_Stabilized_NS_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_NewtonUR_TurbWake_btest.cpp29f39292718a17e9b24ad914eb465f85663d5a4d1539202532000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduStarted a new test case 2018-10-10 16:15:32 -040029f39292718a17e9b24ad914eb465f85663d5a4dStarted a new test caseaddtest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_NewtonUR_TurbWake_btest.cppsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.h27875b1ffabbc94b546491638c060f35d7fdcbcb1539203054000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educhanged to copy construction 2018-10-10 16:24:14 -040027875b1ffabbc94b546491638c060f35d7fdcbcbchanged to copy constructioneditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_NewtonUR_TurbWake_btest.cppa731ce2dc0de49648c5e57d8e187ac962bb35ce31539204613000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduExposed Netwon iterations of free-transition solve 2018-10-10 16:50:13 -0400a731ce2dc0de49648c5e57d8e187ac962bb35ce3Exposed Netwon iterations of free-transition solveedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_NewtonUR_TurbWake_btest.cpptest/system/Asymptotic/ErrorOrder_3D_DGBR2_Periodic_Hex_AD_btest.cpp12062bcb1a5d6de86633cefb37f6531073b9837d1539206399000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMissed a solution initialization for PETSc 2018-10-10 17:19:59 -040012062bcb1a5d6de86633cefb37f6531073b9837dMissed a solution initialization for PETScedittest/system/Asymptotic/ErrorOrder_3D_DGBR2_Periodic_Hex_AD_btest.cppsrc/Field/Partition/XField_Lagrange.hsrc/Field/Partition/XField_Lagrange_Distribute_impl.h4eb38e3cf1e5e95be4c0c0e2394f9f8c745dd3c61539222965000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded parallel interfac to XField_Lagrange. 2018-10-10 21:56:05 -04004eb38e3cf1e5e95be4c0c0e2394f9f8c745dd3c6Added parallel interfac to XField_Lagrange.editsrc/Field/Partition/XField_Lagrange.heditsrc/Field/Partition/XField_Lagrange_Distribute_impl.hsrc/Meshing/refine/XField3D_refine.cppd264755d5502ade780c0b1ca2aab92935b0692631539227680000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdated XField3D_refine so it hopefully works in parallel 2018-10-10 23:14:40 -0400d264755d5502ade780c0b1ca2aab92935b069263Updated XField3D_refine so it hopefully works in paralleleditsrc/Meshing/refine/XField3D_refine.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_NewtonUR_TurbWake_btest.cpp8e1b1f3bc1f9c58f6b331a230a244dca3734b2411539267537000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduNested forced-transition solve within nonlinear solution of free-transition problem 2018-10-11 10:18:57 -04008e1b1f3bc1f9c58f6b331a230a244dca3734b241Nested forced-transition solve within nonlinear solution of free-transition problemedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_NewtonUR_TurbWake_btest.cppsrc/Meshing/EGTess/XFieldDomain_impl.htest/unit/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange_btest.cppsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.cppsrc/Meshing/avro/MesherInterface_avro.cppsrc/Adaptation/MOESS/CostModel_LogEuclidean.cpptest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppsrc/Meshing/avro/CMakeLists.txttest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_avro_toy.cppsrc/Meshing/EGTess/XFieldDomain.htest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cpp494814f9103634ad6bb55321c3b4a2678acbdb241539270668000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduwork towards calling avro from parallel SANS 2018-10-11 11:11:08 -0400494814f9103634ad6bb55321c3b4a2678acbdb24work towards calling avro from parallel SANSedittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppeditsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.cppeditsrc/Meshing/avro/MesherInterface_avro.cppeditsrc/Meshing/EGTess/XFieldDomain.hedittest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppeditsrc/Meshing/avro/CMakeLists.txtedittest/unit/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange_btest.cppeditsrc/Adaptation/MOESS/CostModel_LogEuclidean.cppeditsrc/Meshing/EGTess/XFieldDomain_impl.hedittest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_avro_toy.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_NewtonUR_TurbWake_btest.cppf449055644f1a886dfbfc051e7d28c4b3f3d03671539270796000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded a patch to the corner case where transition happens at an element interface 2018-10-11 11:13:16 -0400f449055644f1a886dfbfc051e7d28c4b3f3d0367Added a patch to the corner case where transition happens at an element interfaceedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_NewtonUR_TurbWake_btest.cppsrc/Meshing/refine/XField3D_refine.cppCMakeInclude/Builds/BuildREFINE.cmakeCMakeInclude/Checks/ref_check.csrc/Meshing/refine/MultiScale_metric.hsrc/Field/Partition/XField_Lagrange_Distribute_impl.hsrc/Meshing/refine/XField_refine.hsrc/Meshing/refine/MultiScale_metric.cpptest/unit/Meshing/refine/CMakeLists.txtsrc/pde/AnalyticFunction/ScalarFunction3D.hCMakeInclude/Finds/FindREFINE.cmakeCMakeInclude/Checks/CheckREFINE.cmakesrc/Field/Partition/XField_Lagrange.htest/unit/Meshing/refine/refine3D_btest.cppsrc/Meshing/refine/MesherInterface_refine.cppsrc/Meshing/refine/CMakeLists.txt3ac0d46b5caf23cbf2b4fa70c4804f109c477be11539304132000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.edurefine API now works in parallel 2018-10-11 20:28:52 -04003ac0d46b5caf23cbf2b4fa70c4804f109c477be1refine API now works in paralleleditCMakeInclude/Builds/BuildREFINE.cmakeeditCMakeInclude/Checks/CheckREFINE.cmakeeditCMakeInclude/Checks/ref_check.ceditsrc/Meshing/refine/CMakeLists.txteditsrc/Field/Partition/XField_Lagrange.heditsrc/Meshing/refine/MesherInterface_refine.cppaddsrc/Meshing/refine/MultiScale_metric.cppeditsrc/Field/Partition/XField_Lagrange_Distribute_impl.haddsrc/Meshing/refine/MultiScale_metric.hedittest/unit/Meshing/refine/refine3D_btest.cppeditsrc/Meshing/refine/XField3D_refine.cppeditCMakeInclude/Finds/FindREFINE.cmakeeditsrc/Meshing/refine/XField_refine.hedittest/unit/Meshing/refine/CMakeLists.txteditsrc/pde/AnalyticFunction/ScalarFunction3D.hsrc/Meshing/refine/MultiScale_metric.cppsrc/Adaptation/MOESS/SolverInterface_Galerkin.hsrc/pde/AnalyticFunction/ScalarFunction3D.h745ba5ec56113c44bd697581b156e47a9af0191d1539308198000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduDon't allocate P and P+1 jacobian at the same time for Galerkin 2018-10-11 21:36:38 -0400745ba5ec56113c44bd697581b156e47a9af0191dDon't allocate P and P+1 jacobian at the same time for Galerkineditsrc/Meshing/refine/MultiScale_metric.cppeditsrc/Adaptation/MOESS/SolverInterface_Galerkin.heditsrc/pde/AnalyticFunction/ScalarFunction3D.hCMakeInclude/Finds/FindZOLTAN.cmakeCMakeInclude/Builds/BuildZOLTAN.cmakesrc/Field/Partition/XField_Lagrange_Distribute_impl.h0a7d64adb24db3642faa331672c0eb780ff3cb731539308507000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduForgot some files 2018-10-11 21:41:47 -04000a7d64adb24db3642faa331672c0eb780ff3cb73Forgot some filesaddCMakeInclude/Builds/BuildZOLTAN.cmakeaddCMakeInclude/Finds/FindZOLTAN.cmakeeditsrc/Field/Partition/XField_Lagrange_Distribute_impl.hsrc/Meshing/refine/XField3D_refine.cppsrc/pde/AnalyticFunction/ScalarFunction3D.hsrc/Adaptation/MOESS/ErrorModel.cppsrc/Field/Partition/XField_Lagrange_Distribute_impl.hsrc/Field/Partition/XField_Lagrange.ha3cb6492cbe359a7d0c3702b70874ccc48e491531539346198000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduVarious fixes 2018-10-12 08:09:58 -0400a3cb6492cbe359a7d0c3702b70874ccc48e49153Various fixeseditsrc/Field/Partition/XField_Lagrange_Distribute_impl.heditsrc/Field/Partition/XField_Lagrange.heditsrc/pde/AnalyticFunction/ScalarFunction3D.heditsrc/Meshing/refine/XField3D_refine.cppeditsrc/Adaptation/MOESS/ErrorModel.cppsrc/Field/Partition/XField_Lagrange_Distribute_impl.hbd8b69fe01deaed03dcc213d2c616ac3575dc43b1539348922000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMore informative error messages 2018-10-12 08:55:22 -0400bd8b69fe01deaed03dcc213d2c616ac3575dc43bMore informative error messageseditsrc/Field/Partition/XField_Lagrange_Distribute_impl.hsrc/Field/Partition/XField_Lagrange_Distribute_impl.hbcf178df600c3ddba06712b169e79dec6f5fdee01539355269000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduOne more fix for parallel grid creation 2018-10-12 10:41:09 -0400bcf178df600c3ddba06712b169e79dec6f5fdee0One more fix for parallel grid creationeditsrc/Field/Partition/XField_Lagrange_Distribute_impl.hsrc/Field/Partition/XField_Lagrange_Distribute_impl.h80c989a711915f8eed09acbcd6713eb068f6a5bb1539355332000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduTypo 2018-10-12 10:42:12 -040080c989a711915f8eed09acbcd6713eb068f6a5bbTypoeditsrc/Field/Partition/XField_Lagrange_Distribute_impl.hsrc/Meshing/EPIC/MesherInterface_Epic.h.gitignoresrc/Meshing/refine/MesherInterface_refine.cppsrc/Meshing/EPIC/MesherInterface_Epic.cppCMakeInclude/Builds/BuildREFINE.cmake2b4af19cf38f08d9272c5865cb5614361a3f44811539365902000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMore robust EPIC call interface. Improved refine build. 2018-10-12 10:38:22 -07002b4af19cf38f08d9272c5865cb5614361a3f4481More robust EPIC call interface. Improved refine build.editsrc/Meshing/refine/MesherInterface_refine.cppeditsrc/Meshing/EPIC/MesherInterface_Epic.hedit.gitignoreeditCMakeInclude/Builds/BuildREFINE.cmakeeditsrc/Meshing/EPIC/MesherInterface_Epic.cppsrc/pde/IBL/SetIBLtransitionFrontCellGroup.h04bbe344d68cacd1d575cf0326704d301af7cc6d1539368744000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed a bug in transition location identification within cells 2018-10-12 14:25:44 -040004bbe344d68cacd1d575cf0326704d301af7cc6dFixed a bug in transition location identification within cellseditsrc/pde/IBL/SetIBLtransitionFrontCellGroup.hsrc/Meshing/refine/MultiScale_metric.cppeff7c8ac6e8cf7c79b850b0743284eed1ae5d1941539368833000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed memory leak 2018-10-12 14:27:13 -0400eff7c8ac6e8cf7c79b850b0743284eed1ae5d194Fixed memory leakeditsrc/Meshing/refine/MultiScale_metric.cppsrc/Meshing/refine/MesherInterface_refineParams.cppsrc/Meshing/EPIC/MesherInterface_Epic.cppsrc/Meshing/refine/MesherInterface_refine.hsrc/Meshing/refine/MesherInterface_refine.cppba4a56ac0c594ca88cb8fdeacc76db6676d762b91539374010000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMore robust system call to refine 2018-10-12 15:53:30 -0400ba4a56ac0c594ca88cb8fdeacc76db6676d762b9More robust system call to refineeditsrc/Meshing/EPIC/MesherInterface_Epic.cppeditsrc/Meshing/refine/MesherInterface_refineParams.cppeditsrc/Meshing/refine/MesherInterface_refine.heditsrc/Meshing/refine/MesherInterface_refine.cppsrc/Adaptation/MOESS/ErrorModel.cpp7a2174a7d78f22a1be50be1e85fd807c151304321539377400000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumight Edge local work? 2018-10-12 16:50:00 -04007a2174a7d78f22a1be50be1e85fd807c15130432might Edge local work?editsrc/Adaptation/MOESS/ErrorModel.cppsrc/Adaptation/MeshAdapter.htest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cpp1dab9f28e962f466cfe87dc9c474875e0c73dd0c1539380966000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edurunning a 3D CG adapt in parallel! 2018-10-12 17:49:26 -04001dab9f28e962f466cfe87dc9c474875e0c73dd0crunning a 3D CG adapt in parallel!edittest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppeditsrc/Adaptation/MeshAdapter.htest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppf500186f472c5d38aadf08aeb8bcd2ece079e78e1539381613000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduforgot to actually use the scheduler 2018-10-12 18:00:13 -0400f500186f472c5d38aadf08aeb8bcd2ece079e78eforgot to actually use the scheduleredittest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppsrc/Adaptation/MOESS/SolverInterface_DGBR2.h6c533ce0dc8d254d32e472b421bb305498c12a9f1539382308000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduPrecondition adjoint P+1 solve with adjoint P solve for DGBR2 2018-10-12 18:11:48 -04006c533ce0dc8d254d32e472b421bb305498c12a9fPrecondition adjoint P+1 solve with adjoint P solve for DGBR2editsrc/Adaptation/MOESS/SolverInterface_DGBR2.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixS_Instantiate.cppsrc/Discretization/DG/AlgebraicEquationSet_DGBR2_impl.hsrc/Discretization/DG/AlgebraicEquationSet_DGBR2.h31253cb773577effd0299f2fd24e5a56130003cf1539382676000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduForgot some files 2018-10-12 18:17:56 -040031253cb773577effd0299f2fd24e5a56130003cfForgot some fileseditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixS_Instantiate.cppeditsrc/Discretization/DG/AlgebraicEquationSet_DGBR2.heditsrc/Discretization/DG/AlgebraicEquationSet_DGBR2_impl.hCMakeInclude/CompilerFlags.cmaketest/sandbox/Adapt3D_DG_AD_L2_MOESS_toy.cppCMakeInclude/Builds/BuildSUITESPARSE.cmakeCMakeInclude/Builds/BuildREFINE.cmakesrc/Field/Partition/XField_Lagrange_Distribute_impl.hsrc/pde/AnalyticFunction/ScalarFunction3D.cppsrc/pde/AnalyticFunction/ScalarFunction3D.hCMakeInclude/Builds/BuildZOLTAN.cmakeCMakeInclude/Builds/BuildCBLAS.cmakesrc/Adaptation/MOESS/ErrorModel_Elemental.cppCMakeInclude/Builds/BuildPARMETIS.cmakeCMakeInclude/Builds/BuildPETSC.cmaketest/system/LocalSolve/CMakeLists.txtCMakeInclude/Builds/BuildTRIANGLE.cmaketest/unit/Meshing/refine/refine3D_btest.cppCMakeInclude/Builds/BuildNLOPT.cmakeCMakeInclude/Builds/BuildTETGEN.cmake5fd3bfd8b82be5b59b4763a932a7ac197200e43f1539451876000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduWroking on L2 projections. Various fixes 2018-10-13 13:31:16 -04005fd3bfd8b82be5b59b4763a932a7ac197200e43fWroking on L2 projections. Various fixesedittest/unit/Meshing/refine/refine3D_btest.cppeditCMakeInclude/Builds/BuildCBLAS.cmakeeditCMakeInclude/Builds/BuildZOLTAN.cmakeeditsrc/Adaptation/MOESS/ErrorModel_Elemental.cppeditsrc/Field/Partition/XField_Lagrange_Distribute_impl.hedittest/system/LocalSolve/CMakeLists.txteditsrc/pde/AnalyticFunction/ScalarFunction3D.heditCMakeInclude/CompilerFlags.cmakeaddtest/sandbox/Adapt3D_DG_AD_L2_MOESS_toy.cppeditCMakeInclude/Builds/BuildTETGEN.cmakeeditCMakeInclude/Builds/BuildTRIANGLE.cmakeeditCMakeInclude/Builds/BuildNLOPT.cmakeeditCMakeInclude/Builds/BuildPETSC.cmakeeditCMakeInclude/Builds/BuildSUITESPARSE.cmakeeditCMakeInclude/Builds/BuildREFINE.cmakeeditsrc/pde/AnalyticFunction/ScalarFunction3D.cppeditCMakeInclude/Builds/BuildPARMETIS.cmaketest/sandbox/Adapt3D_DG_AD_L2_MOESS_toy.cppsrc/pde/AnalyticFunction/ScalarFunction3D.h08ce97817979e4bccfd15d8e63661f6ddd033c881539458746000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixes for L2 projection cases 2018-10-13 15:25:46 -040008ce97817979e4bccfd15d8e63661f6ddd033c88Fixes for L2 projection caseseditsrc/pde/AnalyticFunction/ScalarFunction3D.hedittest/sandbox/Adapt3D_DG_AD_L2_MOESS_toy.cpptest/sandbox/Adapt3D_DG_AD_L2_MOESS_toy.cpp4cfb644753f56345420bc694a1da4f1827fbb02e1539459073000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduTypo 2018-10-13 15:31:13 -04004cfb644753f56345420bc694a1da4f1827fbb02eTypoedittest/sandbox/Adapt3D_DG_AD_L2_MOESS_toy.cpptest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cpptest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cpp33b91df32e1f4f1669d2845356f01f35be3db5fd1539486892000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduadded a targetCost scheduler 2018-10-13 23:14:52 -040033b91df32e1f4f1669d2845356f01f35be3db5fdadded a targetCost scheduleredittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppedittest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppb270a8156269c26f579aa85eca69ea192561be961539539504000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduunused variable and style fixes 2018-10-14 13:51:44 -0400b270a8156269c26f579aa85eca69ea192561be96unused variable and style fixesedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppedittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppsrc/Meshing/EGADS/EGModel.cppsrc/Meshing/EGTess/XFieldDomain_impl.hCMakeInclude/CompilerFlags.cmakesrc/Adaptation/TargetMetric.hsrc/Adaptation/MeshAdapter.cppsrc/Field/Partition/XField_Lagrange_Distribute_impl.hsrc/Adaptation/MeshAdapter.htest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppsrc/Adaptation/CMakeLists.txtsrc/Adaptation/MOESS/NodalMetrics.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppsrc/Adaptation/MOESS/NodalMetrics.hsrc/Adaptation/TargetMetric.cppsrc/Field/XField_impl.hsrc/Meshing/EGADS/EGBody.hsrc/Adaptation/MOESS/MOESS.cppsrc/Meshing/avro/MesherInterface_avro.cpptest/sandbox/Adapt3D_DGBR2_AD_HemisphereCylinder_toy.cppsrc/Meshing/EGTess/XFieldDomain.htest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppa7ec6a5aabc70eeb7b4c88594064191e8c6b0ea91539610636000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edumaintain same list of lower-dim egads entities for parallel 2018-10-15 09:37:16 -0400a7ec6a5aabc70eeb7b4c88594064191e8c6b0ea9maintain same list of lower-dim egads entities for paralleleditsrc/Adaptation/MOESS/NodalMetrics.cppeditsrc/Adaptation/MeshAdapter.hedittest/sandbox/Adapt3D_DGBR2_AD_HemisphereCylinder_toy.cppedittest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppeditsrc/Adaptation/MeshAdapter.cppaddsrc/Adaptation/TargetMetric.cppeditsrc/Meshing/EGADS/EGModel.cppeditsrc/Adaptation/MOESS/NodalMetrics.heditsrc/Meshing/EGTess/XFieldDomain_impl.heditsrc/Meshing/EGTess/XFieldDomain.hedittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppeditsrc/Field/XField_impl.heditsrc/Meshing/EGADS/EGBody.heditsrc/Field/Partition/XField_Lagrange_Distribute_impl.heditsrc/Adaptation/MOESS/MOESS.cppaddsrc/Adaptation/TargetMetric.heditsrc/Meshing/avro/MesherInterface_avro.cppedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppeditCMakeInclude/CompilerFlags.cmakeeditsrc/Adaptation/CMakeLists.txttest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cpptest/sandbox/Adapt3D_Mesh_Optimizer_toy.cpp9a768ed08b0762d4fd97146c7941af01f7350c211539623346000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduavro interface for delta wing case 2018-10-15 13:09:06 -04009a768ed08b0762d4fd97146c7941af01f7350c21avro interface for delta wing caseedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppedittest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppsrc/Meshing/libMeshb/XField_libMeshb.htest/sandbox/Adapt3D_DG_AD_L2_MOESS_toy.cppsrc/Meshing/libMeshb/XFieldVolume_libMeshb.cppsrc/Meshing/libMeshb/XFieldArea_libMeshb.cpp3755abf6edb805ecf8b80ec72c01d055dd3ea2151539624222000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMinor cleanup 2018-10-15 13:23:42 -04003755abf6edb805ecf8b80ec72c01d055dd3ea215Minor cleanupeditsrc/Meshing/libMeshb/XField_libMeshb.heditsrc/Meshing/libMeshb/XFieldVolume_libMeshb.cppedittest/sandbox/Adapt3D_DG_AD_L2_MOESS_toy.cppeditsrc/Meshing/libMeshb/XFieldArea_libMeshb.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppsrc/Meshing/EGTess/XFieldDomain_impl.hsrc/Adaptation/TargetMetric.cpptest/unit/Meshing/avro/CMakeLists.txtsrc/Meshing/avro/MesherInterface_avro.cpptest/unit/Meshing/avro/MesherInterface_avro_btest.cppsrc/Meshing/EGTess/XFieldDomain.hCMakeInclude/Finds/FindAVRO.cmakeCMakeInclude/Dependencies.cmakeb2050ab7a9a04df67fe20cece88c4a22be3f93971539640225000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixes for running avro in parallel 2018-10-15 17:50:25 -0400b2050ab7a9a04df67fe20cece88c4a22be3f9397Fixes for running avro in paralleleditsrc/Meshing/EGTess/XFieldDomain_impl.heditsrc/Adaptation/TargetMetric.cppedittest/unit/Meshing/avro/CMakeLists.txtedittest/unit/Meshing/avro/MesherInterface_avro_btest.cppeditCMakeInclude/Finds/FindAVRO.cmakeeditsrc/Meshing/EGTess/XFieldDomain.heditsrc/Meshing/avro/MesherInterface_avro.cppeditCMakeInclude/Dependencies.cmakeedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cpptest/sandbox/Adapt2D_DGBR2_RANSSA_FlatPlate_toy.cppsrc/Adaptation/MOESS/ErrorModel.cppsrc/Meshing/refine/MultiScale_metric.hCMakeInclude/Builds/BuildREFINE.cmakesrc/pde/AnalyticFunction/ScalarFunction3D.cppCMakeInclude/Builds/BuildZOLTAN.cmakeCMakeInclude/Finds/FindZOLTAN.cmaketest/system/LocalSolve/CMakeLists.txtsrc/Field/Partition/XField_Lagrange.htest/unit/Meshing/refine/refine3D_btest.cppsrc/Discretization/DG/AlgebraicEquationSet_DGBR2_impl.htest/sandbox/Adapt3D_DG_AD_L2_MOESS_toy.cppCMakeInclude/Builds/BuildSUITESPARSE.cmakeCMakeInclude/Checks/ref_check.csrc/Meshing/refine/MultiScale_metric.cpptest/unit/Meshing/refine/CMakeLists.txtsrc/pde/AnalyticFunction/ScalarFunction3D.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixS_Instantiate.cppsrc/Adaptation/MOESS/ErrorModel_Elemental.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppsrc/Adaptation/MOESS/SolverInterface_Galerkin.hsrc/Meshing/refine/MesherInterface_refine.hCMakeInclude/Builds/BuildTETGEN.cmakesrc/Meshing/refine/MesherInterface_refine.cpptest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cppsrc/Meshing/libMeshb/XField_libMeshb.hCMakeInclude/CompilerFlags.cmakesrc/Meshing/refine/XField3D_refine.cpp.gitignoresrc/Meshing/refine/XField_refine.hsrc/Field/Partition/XField_Lagrange_Distribute_impl.hsrc/Adaptation/MOESS/SolverInterface_DGBR2.hsrc/Meshing/libMeshb/XFieldArea_libMeshb.cppCMakeInclude/Builds/BuildPARMETIS.cmakeCMakeInclude/Builds/BuildPETSC.cmakeCMakeInclude/Checks/CheckREFINE.cmakeCMakeInclude/Builds/BuildNLOPT.cmakesrc/Meshing/EPIC/MesherInterface_Epic.hsrc/Meshing/libMeshb/XFieldVolume_libMeshb.cppsrc/Discretization/DG/AlgebraicEquationSet_DGBR2.hsrc/Adaptation/MeshAdapter.hCMakeInclude/Finds/FindREFINE.cmaketest/system/LocalSolve/ElementDualLocalSolve3D_Galerkin_Stabilized_Triangle_AD_btest.cppCMakeInclude/Builds/BuildCBLAS.cmakeCMakeInclude/Builds/BuildTRIANGLE.cmaketest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppsrc/Discretization/Galerkin/Stabilization_Galerkin.hsrc/Meshing/refine/MesherInterface_refineParams.cpptest/unit/Field/Element/ElementProjection_L2_Triangle_btest.cppsrc/Meshing/EPIC/MesherInterface_Epic.cpptest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppsrc/Meshing/refine/CMakeLists.txtfbb4679eec625ee33ec53742c227160932a724711539640679000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edumerge conflict 2018-10-15 17:57:59 -0400fbb4679eec625ee33ec53742c227160932a72471merge conflicteditsrc/pde/AnalyticFunction/ScalarFunction3D.cppeditsrc/pde/AnalyticFunction/ScalarFunction3D.hedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppeditsrc/Discretization/DG/AlgebraicEquationSet_DGBR2.heditsrc/Meshing/EPIC/MesherInterface_Epic.cppeditsrc/Meshing/refine/MesherInterface_refine.cppeditCMakeInclude/Builds/BuildCBLAS.cmakeeditCMakeInclude/Finds/FindREFINE.cmakeeditsrc/Meshing/libMeshb/XField_libMeshb.haddsrc/Meshing/refine/MultiScale_metric.cppeditsrc/Adaptation/MOESS/SolverInterface_DGBR2.haddCMakeInclude/Finds/FindZOLTAN.cmakeeditsrc/Meshing/refine/XField_refine.hedittest/sandbox/Adapt2D_DGBR2_RANSSA_FlatPlate_toy.cppeditsrc/Adaptation/MOESS/SolverInterface_Galerkin.heditsrc/Field/Partition/XField_Lagrange.heditCMakeInclude/Checks/CheckREFINE.cmakeedittest/unit/Meshing/refine/refine3D_btest.cppeditsrc/Field/Partition/XField_Lagrange_Distribute_impl.haddCMakeInclude/Builds/BuildZOLTAN.cmakeaddtest/sandbox/Adapt3D_DG_AD_L2_MOESS_toy.cppeditCMakeInclude/Builds/BuildPETSC.cmakeeditsrc/Adaptation/MeshAdapter.heditCMakeInclude/Builds/BuildTETGEN.cmakeeditsrc/Adaptation/MOESS/ErrorModel_Elemental.cppaddsrc/Meshing/refine/MultiScale_metric.hedittest/system/LocalSolve/CMakeLists.txteditsrc/Meshing/refine/MesherInterface_refineParams.cppeditCMakeInclude/CompilerFlags.cmakeeditsrc/Discretization/Galerkin/Stabilization_Galerkin.heditsrc/Meshing/libMeshb/XFieldVolume_libMeshb.cppeditsrc/Meshing/refine/MesherInterface_refine.hedit.gitignoreeditsrc/Meshing/EPIC/MesherInterface_Epic.heditsrc/Meshing/libMeshb/XFieldArea_libMeshb.cppeditCMakeInclude/Builds/BuildNLOPT.cmakeeditCMakeInclude/Builds/BuildSUITESPARSE.cmakeedittest/unit/Field/Element/ElementProjection_L2_Triangle_btest.cppeditCMakeInclude/Builds/BuildPARMETIS.cmakeeditsrc/Meshing/refine/XField3D_refine.cppedittest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppedittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppeditCMakeInclude/Builds/BuildTRIANGLE.cmakeeditsrc/Meshing/refine/CMakeLists.txteditCMakeInclude/Checks/ref_check.ceditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixS_Instantiate.cppedittest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cppedittest/system/LocalSolve/ElementDualLocalSolve3D_Galerkin_Stabilized_Triangle_AD_btest.cppeditsrc/Adaptation/MOESS/ErrorModel.cppeditCMakeInclude/Builds/BuildREFINE.cmakeeditsrc/Discretization/DG/AlgebraicEquationSet_DGBR2_impl.hedittest/unit/Meshing/refine/CMakeLists.txttest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppsrc/Meshing/EGTess/XFieldDomain_impl.hsrc/Meshing/EGTess/XFieldDomain.htest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppba6382e9ccad8d5c4f0842be45c6bf1c0a58aa631539696031000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduboundary conditions in the correct order... 2018-10-16 09:20:31 -0400ba6382e9ccad8d5c4f0842be45c6bf1c0a58aa63boundary conditions in the correct order...editsrc/Meshing/EGTess/XFieldDomain_impl.hedittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppeditsrc/Meshing/EGTess/XFieldDomain.hedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppsrc/Meshing/EGTess/XFieldDomain_impl.hsrc/Meshing/EGTess/XFieldDomain.hsrc/Adaptation/TargetMetric.cpptest/unit/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange_btest.cpptest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cpp55b0671a806f44b06c3c0593ad98f9b8e931126b1539697321000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduxfielddomain constructor when sans_avro not defined, warning fixes 2018-10-16 09:42:01 -040055b0671a806f44b06c3c0593ad98f9b8e931126bxfielddomain constructor when sans_avro not defined, warning fixeseditsrc/Meshing/EGTess/XFieldDomain_impl.heditsrc/Meshing/EGTess/XFieldDomain.hedittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppedittest/unit/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange_btest.cppeditsrc/Adaptation/TargetMetric.cppsrc/Meshing/EGTess/XFieldDomain_impl.h78fd7566203f8b8d5ab384cb37aa82c50c842d061539697574000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edulingering comma 2018-10-16 09:46:14 -040078fd7566203f8b8d5ab384cb37aa82c50c842d06lingering commaeditsrc/Meshing/EGTess/XFieldDomain_impl.htest/unit/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange_btest.cpp0d8c70bf8ec5ab88bfbb203587da51f5438e17731539701728000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduforgot to comment some testing things that dont work 2018-10-16 10:55:28 -04000d8c70bf8ec5ab88bfbb203587da51f5438e1773forgot to comment some testing things that dont workedittest/unit/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange_btest.cppsrc/Discretization/Galerkin/AlgebraicEquationSet_Project.hCMakeInclude/CompilerFlags.cmakesrc/Meshing/refine/MesherInterface_refine.hCMakeInclude/Builds/BuildREFINE.cmakesrc/Meshing/refine/MesherInterface_refineParams.cppCMakeInclude/Dependencies.cmakesrc/Meshing/refine/MesherInterface_refine.cppsrc/Meshing/refine/CMakeLists.txt88ca63ddb2e615776d753d72111977a6fcd424e41539704825000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduVarious fixes to refine. L2 CG projection works in parallel 2018-10-16 08:47:05 -070088ca63ddb2e615776d753d72111977a6fcd424e4Various fixes to refine. L2 CG projection works in paralleleditsrc/Discretization/Galerkin/AlgebraicEquationSet_Project.heditsrc/Meshing/refine/MesherInterface_refine.heditCMakeInclude/Builds/BuildREFINE.cmakeeditsrc/Meshing/refine/MesherInterface_refineParams.cppeditCMakeInclude/Dependencies.cmakeeditsrc/Meshing/refine/MesherInterface_refine.cppeditCMakeInclude/CompilerFlags.cmakeeditsrc/Meshing/refine/CMakeLists.txttest/sandbox/Adapt3D_DG_AD_L2_MOESS_toy.cppsrc/Meshing/refine/XField3D_refine.cppCMakeInclude/Checks/CheckREFINE.cmaketest/sandbox/Adapt3D_CG_AD_L2_MOESS_toy.cpptest/unit/Meshing/refine/CMakeLists.txttest/sandbox/Adapt3D_CG_AD_L2_MultiScale_toy.cppCMakeInclude/MakeSummaryFile.cmakesrc/Meshing/refine/MesherInterface_refine.cppCMakeInclude/Dependencies.cmakeCMakeInclude/Finds/FindREFINE.cmakesrc/Meshing/refine/CMakeLists.txt10f7218ef359c219db1db4b52b65d1c01d948a7c1539722797000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixes for refine. L2 cases to run for paper. 2018-10-16 16:46:37 -040010f7218ef359c219db1db4b52b65d1c01d948a7cFixes for refine. L2 cases to run for paper.edittest/sandbox/Adapt3D_DG_AD_L2_MOESS_toy.cppaddtest/sandbox/Adapt3D_CG_AD_L2_MOESS_toy.cppeditCMakeInclude/MakeSummaryFile.cmakeedittest/unit/Meshing/refine/CMakeLists.txteditCMakeInclude/Checks/CheckREFINE.cmakeeditsrc/Meshing/refine/CMakeLists.txteditsrc/Meshing/refine/MesherInterface_refine.cppeditsrc/Meshing/refine/XField3D_refine.cppeditCMakeInclude/Finds/FindREFINE.cmakeeditCMakeInclude/Dependencies.cmakeaddtest/sandbox/Adapt3D_CG_AD_L2_MultiScale_toy.cpptest/unit/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange_btest.cppsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.hc70c8e82b9d4879b09c427ead29365ba3673047b1539723106000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed warnings 2018-10-16 16:51:46 -0400c70c8e82b9d4879b09c427ead29365ba3673047bFixed warningsedittest/unit/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange_btest.cppeditsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.htest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppfa62888da657a29dc95b60d9004586465562f19b1539785424000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUsing DirectLU for DeltaWing adjoint 2018-10-17 10:10:24 -0400fa62888da657a29dc95b60d9004586465562f19bUsing DirectLU for DeltaWing adjointedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppsrc/Meshing/EGTess/XFieldDomain_impl.htest/sandbox/Adapt2D_Mesh_Optimizer_toy.cppsrc/Meshing/avro/MesherInterface_avro.cppsrc/Meshing/EGTess/XFieldDomain.cpptest/sandbox/Adapt3D_DGBR2_AD_HemisphereCylinder_toy.cpptest/sandbox/Adapt3D_Mesh_Optimizer_toy.cpptest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_avro_toy.cppsrc/Meshing/avro/MesherInterface_avro.hsrc/Meshing/EGTess/XFieldDomain.hCMakeInclude/Finds/FindAVRO.cmaketest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppaca641ea64ae4414d94eff1b4f049ae663d38e5f1539789622000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edumods to avro interface, added Curved parameter to omit visiblity checks on geometry 2018-10-17 11:20:22 -0400aca641ea64ae4414d94eff1b4f049ae663d38e5fmods to avro interface, added Curved parameter to omit visiblity checks on geometryeditCMakeInclude/Finds/FindAVRO.cmakeedittest/sandbox/Adapt3D_DGBR2_AD_HemisphereCylinder_toy.cppedittest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppedittest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_avro_toy.cppeditsrc/Meshing/EGTess/XFieldDomain_impl.heditsrc/Meshing/avro/MesherInterface_avro.hedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppedittest/sandbox/Adapt2D_Mesh_Optimizer_toy.cppeditsrc/Meshing/avro/MesherInterface_avro.cppeditsrc/Meshing/EGTess/XFieldDomain.hedittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppeditsrc/Meshing/EGTess/XFieldDomain.cppsrc/Meshing/refine/XField3D_refine.cpptest/sandbox/Adapt3D_DG_AD_L2_MOESS_toy.cppCMakeInclude/Builds/BuildGEOGRAM.cmakeCMakeInclude/Builds/BuildREFINE.cmakeCMakeInclude/Builds/BuildSUITESPARSE.cmakesrc/Field/Partition/XField_Lagrange_Distribute_impl.hCMakeInclude/Builds/BuildEGADS.cmaketest/unit/Meshing/refine/CMakeLists.txtCMakeInclude/Builds/BuildLAPACK.cmakeCMakeInclude/Builds/BuildZOLTAN.cmakeCMakeInclude/Builds/BuildCBLAS.cmakeCMakeInclude/Builds/BuildPARMETIS.cmakeCMakeInclude/Builds/BuildPETSC.cmakeCMakeInclude/Builds/BuildTRIANGLE.cmakeCMakeInclude/Builds/BuildBoost.cmaketest/sandbox/Adapt3D_CG_AD_L2_MOESS_toy.cppCMakeInclude/Builds/BuildNLOPT.cmakeCMakeInclude/Builds/BuildTETGEN.cmaketest/sandbox/Adapt3D_CG_AD_L2_MultiScale_toy.cppCMakeInclude/MakeSummaryFile.cmakesrc/Meshing/refine/MesherInterface_refine.cpp9117e4f412de25c7617fce823daa9ef8afe5dea01539808056000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduVarious fixes to refine interface and AD L2 cases. 2018-10-17 16:27:36 -04009117e4f412de25c7617fce823daa9ef8afe5dea0Various fixes to refine interface and AD L2 cases.edittest/sandbox/Adapt3D_CG_AD_L2_MOESS_toy.cppeditCMakeInclude/Builds/BuildBoost.cmakeeditCMakeInclude/Builds/BuildTETGEN.cmakeedittest/sandbox/Adapt3D_CG_AD_L2_MultiScale_toy.cppeditCMakeInclude/Builds/BuildREFINE.cmakeeditCMakeInclude/Builds/BuildCBLAS.cmakeeditCMakeInclude/Builds/BuildPARMETIS.cmakeeditsrc/Meshing/refine/XField3D_refine.cppeditCMakeInclude/Builds/BuildZOLTAN.cmakeedittest/sandbox/Adapt3D_DG_AD_L2_MOESS_toy.cppeditsrc/Field/Partition/XField_Lagrange_Distribute_impl.heditCMakeInclude/Builds/BuildEGADS.cmakeedittest/unit/Meshing/refine/CMakeLists.txteditCMakeInclude/Builds/BuildPETSC.cmakeeditCMakeInclude/Builds/BuildSUITESPARSE.cmakeeditCMakeInclude/Builds/BuildGEOGRAM.cmakeeditCMakeInclude/Builds/BuildNLOPT.cmakeeditCMakeInclude/Builds/BuildTRIANGLE.cmakeeditCMakeInclude/MakeSummaryFile.cmakeeditsrc/Meshing/refine/MesherInterface_refine.cppeditCMakeInclude/Builds/BuildLAPACK.cmakeDeveloperEmailAddresses71e208c41070a635d53cf914a7a8c3ca47a576701539811134000https://acdl.mit.edu/csi/user/mlaroccamlaroccamlarocca@mit.eduAdded mlarocca@mit.edu to DeveloperEmailAddresses 2018-10-17 17:18:54 -040071e208c41070a635d53cf914a7a8c3ca47a57670Added mlarocca@mit.edu to DeveloperEmailAddresseseditDeveloperEmailAddressessrc/PanelMethod/ProjectionToQauxi_IBL.hsrc/pde/IBL/PDEIBLUniField.h232fb94ce6a7156fe671e22ffcca2174e1330ca31539819268000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRevived UniField IBL. Verified system test on laminarAirfoil+turbulentWake coupled solution case 2018-10-17 19:34:28 -0400232fb94ce6a7156fe671e22ffcca2174e1330ca3Revived UniField IBL. Verified system test on laminarAirfoil+turbulentWake coupled solution caseeditsrc/PanelMethod/ProjectionToQauxi_IBL.heditsrc/pde/IBL/PDEIBLUniField.hsrc/pde/NDConvert/PDENDConvertSpace2D.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test.txtsrc/pde/IBL/PDEIBLUniField.hf47114123731f99829d4535a1f6e39466472b90b1539820186000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduUpdated pyrite file. Also revived and verified intra-cell forced transition case of UniField IBL 2018-10-17 19:49:46 -0400f47114123731f99829d4535a1f6e39466472b90bUpdated pyrite file. Also revived and verified intra-cell forced transition case of UniField IBLedittest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test.txtedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppeditsrc/pde/IBL/PDEIBLUniField.heditsrc/pde/NDConvert/PDENDConvertSpace2D.htest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne64_a0_unifield.txttest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpp48305f8a9b4893cbf343cd2c3e209df1750419741539820592000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduMinor cleanup 2018-10-17 19:56:32 -040048305f8a9b4893cbf343cd2c3e209df175041974Minor cleanupedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppedittest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne64_a0_unifield.txttest/system/IO/CodeConsistency/IBL/naca0004_ne78.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne1024_a0_unifield.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne96_a0_unifield.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne640_a0_unifield.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne512_a0_unifield.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne128_a0_unifield.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne360_a0_unifield.txttest/system/IO/CodeConsistency/IBL/naca0004_ne78_wake_a0.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne256_a0_unifield.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne800_a0_unifield.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne192_a0_unifield.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne64_a0_unifield.txttest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne2048_a0_unifield.txt320b2e718f90d5b299ac2b1f76d16b8950ef45241539824291000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduCommited: ready to run UniField IBL intra-cell forced transition in mass 2018-10-17 20:58:11 -0400320b2e718f90d5b299ac2b1f76d16b8950ef4524Commited: ready to run UniField IBL intra-cell forced transition in massaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne1024_a0_unifield.txtaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne256_a0_unifield.txtaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne128_a0_unifield.txtdeletetest/system/IO/CodeConsistency/IBL/naca0004_ne78.txtaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne800_a0_unifield.txtdeletetest/system/IO/CodeConsistency/IBL/naca0004_ne78_wake_a0.txtaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne96_a0_unifield.txtaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne640_a0_unifield.txtaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne2048_a0_unifield.txtaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne360_a0_unifield.txtaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne192_a0_unifield.txtaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne512_a0_unifield.txtedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppedittest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne64_a0_unifield.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne256_a0.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne128_a0.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne96_a0.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne360_a0.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne800_a0.txttest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne192_a0.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne640_a0.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne2048_a0.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne1024_a0.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne512_a0.txtc26dd4a1c7dc63e708a9536487980fc2159dca441539826339000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduCommitted in order to run grid refinement in sweep of duplicate-field IBL intra-cell forced transition. IO files to be cleaned up later 2018-10-17 21:32:19 -0400c26dd4a1c7dc63e708a9536487980fc2159dca44Committed in order to run grid refinement in sweep of duplicate-field IBL intra-cell forced transition. IO files to be cleaned up lateredittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne256_a0.txtaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne512_a0.txtaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne192_a0.txtaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne96_a0.txtaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne2048_a0.txtaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne640_a0.txtaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne1024_a0.txtaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne800_a0.txtaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne128_a0.txtaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne360_a0.txtsrc/Meshing/EPIC/MesherInterface_Epic.cppsrc/Meshing/refine/MesherInterface_refine.cppsrc/Meshing/FeFloa/MesherInterface_FeFloa.cpp3012bbe4b14ea59425bc28b971915091e08163981539831258000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdates for latest fefloa 2018-10-17 22:54:18 -04003012bbe4b14ea59425bc28b971915091e0816398Updates for latest fefloaeditsrc/Meshing/EPIC/MesherInterface_Epic.cppeditsrc/Meshing/FeFloa/MesherInterface_FeFloa.cppeditsrc/Meshing/refine/MesherInterface_refine.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppbdde4f8bfe667840f9aec3ee7157c9483115d41b1539877410000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed a bug in grid convergence running script 2018-10-18 11:43:30 -0400bdde4f8bfe667840f9aec3ee7157c9483115d41bFixed a bug in grid convergence running scriptedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/unit/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange_btest.cppsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.cpp8ae5567c13c0c77cd7287b4c8184e1295759ecc71539882514000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edulagrange basis function on pentatopes with unit tests 2018-10-18 13:08:34 -04008ae5567c13c0c77cd7287b4c8184e1295759ecc7lagrange basis function on pentatopes with unit testsedittest/unit/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange_btest.cppeditsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cpptest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppCMakeInclude/Finds/FindAVRO.cmaketest/sandbox/Adapt2D_Mesh_Optimizer_toy.cppd7dc431689dec790f22b078dd328904cc8bcf02f1539882551000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.educhange to avro interface 2018-10-18 13:09:11 -0400d7dc431689dec790f22b078dd328904cc8bcf02fchange to avro interfaceeditCMakeInclude/Finds/FindAVRO.cmakeedittest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppedittest/sandbox/Adapt2D_Mesh_Optimizer_toy.cppedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppsrc/Meshing/EGTess/XFieldDomain_impl.hsrc/Meshing/EGADS/EGObject.hsrc/Meshing/avro/MesherInterface_avro.cppsrc/Meshing/EGTess/XFieldDomain.cpptest/unit/Meshing/avro/MesherInterface_avro_btest.cppsrc/Meshing/EGADS/EGObject.cppsrc/Meshing/EGTess/XFieldDomain.hsrc/Meshing/refine/MesherInterface_refine.cppsrc/Meshing/EPIC/MesherInterface_Epic.cppsrc/Meshing/FeFloa/MesherInterface_FeFloa.cppeb73408657ccac8e6acb2c2af8cd65d930182a6f1539896121000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAll kinds of fixes 2018-10-18 16:55:21 -0400eb73408657ccac8e6acb2c2af8cd65d930182a6fAll kinds of fixeseditsrc/Meshing/EGTess/XFieldDomain_impl.hedittest/unit/Meshing/avro/MesherInterface_avro_btest.cppeditsrc/Meshing/refine/MesherInterface_refine.cppeditsrc/Meshing/EGTess/XFieldDomain.cppeditsrc/Meshing/avro/MesherInterface_avro.cppeditsrc/Meshing/FeFloa/MesherInterface_FeFloa.cppeditsrc/Meshing/EGADS/EGObject.cppeditsrc/Meshing/EGTess/XFieldDomain.heditsrc/Meshing/EPIC/MesherInterface_Epic.cppedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppeditsrc/Meshing/EGADS/EGObject.htest/system/IO/CodeConsistency/IBL/naca0004_ne4096.txttest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne4096_a0_unifield.txttest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne4096_a0.txttest/system/IO/CodeConsistency/IBL/naca0004_ne4096_wake_a0.txt8086533f971eebbb4eb608a94a019fe741f4501c1539908792000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded a finer grid test case 2018-10-18 20:26:32 -04008086533f971eebbb4eb608a94a019fe741f4501cAdded a finer grid test caseedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppaddtest/system/IO/CodeConsistency/IBL/naca0004_ne4096.txtaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne4096_a0.txtaddtest/system/IO/CodeConsistency/IBL/naca0004_ne4096_wake_a0.txtaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne4096_a0_unifield.txtsrc/Field/Field_CG_CellConstructor.hsrc/Meshing/EGADS/EGModel.hsrc/Field/Partition/XField_Lagrange.cppsrc/Field/XFieldSpacetime_checkGrid_impl.htest/unit/UnitGrids/CMakeLists.txttest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppsrc/Field/FieldSpacetime_CG_BoundaryTrace.hsrc/Field/Element/ElementAssociativitySpacetime.hsrc/Field/FieldSpacetime_CG_Trace_Instantiate_4D.cppsrc/Field/XFieldSpacetime.hsrc/Field/FieldSpacetime_CG_BoundaryFrame.hsrc/BasisFunction/BasisFunctionSpacetime_Projection.hsrc/LinearAlgebra/DenseLinAlg/StaticSize/Eigen/MatrixSymS_Eigen_4x4.cpptest/unit/UnitGrids/XField_KuhnFreudenthal.hsrc/Adaptation/MOESS/ReferenceElementCost.htest/unit/UnitGrids/XField_KuhnFreudenthal.cppsrc/Field/FieldSpacetime_CG_Cell_Instantiate_4D.cppsrc/Field/XFieldVolume_Traits.hsrc/Field/CMakeLists.txtsrc/Meshing/avro/MesherInterface_avro.cppsrc/Meshing/EGTess/XFieldDomain.cppsrc/Adaptation/MOESS/CostModel_LogEuclidean.cppsrc/Field/FieldSpacetime_CG_BoundaryTrace_impl.hsrc/Meshing/EGADS/EGModel.cppsrc/Field/Field_CG_TraceConstructor.hsrc/Adaptation/MOESS/CostModel_FeFloa.cppsrc/Field/FieldSpacetime_CG_Cell.hsrc/Field/FieldSpacetime_CG_Cell_impl.htest/unit/UnitGrids/XField_KuhnFreudenthal_btest.cppsrc/Field/XFieldSpacetime_impl.hsrc/Field/FieldBase_impl.hsrc/LinearAlgebra/DenseLinAlg/CMakeLists.txtsrc/Field/FieldSpacetime_CG_Trace.hsrc/Adaptation/MOESS/NodalMetrics.cppsrc/Field/FieldSpacetime_CG_InteriorTrace_impl.hsrc/Field/FieldSpacetime_CG_BoundaryTrace_Instantiate_4D.cppsrc/Adaptation/TargetMetric.cppsrc/Meshing/EGADS/EGBody.cppsrc/Field/XFieldSpacetime_buildFrom_impl.hsrc/Meshing/EGADS/EGBody.hsrc/Field/Field_NodalView_Spacetime.cppsrc/Field/FieldSpacetime_CG_Trace_impl.hsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_Det.hsrc/Field/FieldSpacetime_CG_InteriorTrace.hsrc/Field/XFieldSpacetime_Instantiate_4D.cppsrc/Field/FieldSpacetime_Instantiate_4D.cppsrc/Discretization/IntegrateCellGroups.hsrc/Field/FieldSpacetime_CG_InteriorTrace_Instantiate_4D.cpp2ed30ae09bc939a77dbdca5f7e943112fc3f7bb51539911669000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edu4d instantiations, still undefined refs with field & element associativity & some matrix stuff... 2018-10-18 21:14:29 -04002ed30ae09bc939a77dbdca5f7e943112fc3f7bb54d instantiations, still undefined refs with field & element associativity & some matrix stuff...addsrc/Field/Field_NodalView_Spacetime.cppaddsrc/Field/FieldSpacetime_CG_Cell_Instantiate_4D.cppaddsrc/Field/XFieldSpacetime_impl.heditsrc/Adaptation/MOESS/CostModel_FeFloa.cppaddsrc/Field/FieldSpacetime_CG_InteriorTrace_Instantiate_4D.cppeditsrc/Field/Partition/XField_Lagrange.cppaddsrc/Field/FieldSpacetime_CG_BoundaryTrace.haddsrc/Field/FieldSpacetime_CG_BoundaryTrace_Instantiate_4D.cppaddsrc/Field/FieldSpacetime_CG_BoundaryFrame.haddsrc/Field/FieldSpacetime_CG_Cell_impl.haddsrc/Field/FieldSpacetime_CG_Trace.heditsrc/Meshing/EGTess/XFieldDomain.cppeditsrc/Adaptation/MOESS/CostModel_LogEuclidean.cppaddsrc/Field/FieldSpacetime_CG_InteriorTrace_impl.heditsrc/Field/XFieldSpacetime.haddsrc/Field/XFieldSpacetime_checkGrid_impl.haddtest/unit/UnitGrids/XField_KuhnFreudenthal.heditsrc/Field/XFieldVolume_Traits.heditsrc/Field/CMakeLists.txtaddsrc/Field/FieldSpacetime_CG_Trace_impl.haddsrc/Field/FieldSpacetime_CG_Cell.heditsrc/LinearAlgebra/DenseLinAlg/CMakeLists.txteditsrc/Adaptation/MOESS/NodalMetrics.cppeditsrc/Adaptation/MOESS/ReferenceElementCost.heditsrc/Meshing/EGADS/EGModel.haddsrc/Field/XFieldSpacetime_buildFrom_impl.hedittest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppeditsrc/Field/FieldSpacetime_Instantiate_4D.cppeditsrc/Meshing/avro/MesherInterface_avro.cppeditsrc/Adaptation/TargetMetric.cppeditsrc/Meshing/EGADS/EGBody.haddsrc/Field/FieldSpacetime_CG_Trace_Instantiate_4D.cppeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_Det.heditsrc/Field/Element/ElementAssociativitySpacetime.heditsrc/Field/FieldBase_impl.hedittest/unit/UnitGrids/CMakeLists.txteditsrc/BasisFunction/BasisFunctionSpacetime_Projection.heditsrc/Field/Field_CG_CellConstructor.heditsrc/Field/Field_CG_TraceConstructor.haddsrc/Field/XFieldSpacetime_Instantiate_4D.cppaddtest/unit/UnitGrids/XField_KuhnFreudenthal_btest.cppaddsrc/Field/FieldSpacetime_CG_BoundaryTrace_impl.heditsrc/Meshing/EGADS/EGBody.cppaddsrc/LinearAlgebra/DenseLinAlg/StaticSize/Eigen/MatrixSymS_Eigen_4x4.cppaddtest/unit/UnitGrids/XField_KuhnFreudenthal.cppeditsrc/Discretization/IntegrateCellGroups.haddsrc/Field/FieldSpacetime_CG_InteriorTrace.heditsrc/Meshing/EGADS/EGModel.cpptest/sandbox/Adapt3D_CG_AD_L2_MultiScale_toy.cppsrc/Meshing/EGTess/XFieldDomain_impl.h8d37006cc4d81ac45f19f6383aaa3a16ab93dce71539915356000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed warnings/errors 2018-10-18 22:15:56 -04008d37006cc4d81ac45f19f6383aaa3a16ab93dce7Fixed warnings/errorsedittest/sandbox/Adapt3D_CG_AD_L2_MultiScale_toy.cppeditsrc/Meshing/EGTess/XFieldDomain_impl.hsrc/Field/Field_CG_CellConstructor.cppsrc/Adaptation/MOESS/CostModel_FeFloa.cpptest/unit/UnitGrids/XField_KuhnFreudenthal_btest.cppsrc/Adaptation/MOESS/NodalMetrics.cppsrc/LinearAlgebra/DenseLinAlg/StaticSize/Eigen/MatrixSymS_Eigen_4x4.cppsrc/Adaptation/TargetMetric.cppsrc/Field/Element/ElementXFieldVolume_Instantiate_3D.cppsrc/Field/FieldSpacetime_CG_Cell_Instantiate_4D.cppsrc/Meshing/avro/MesherInterface_avro.cppsrc/Meshing/EGTess/XFieldDomain.cppsrc/Adaptation/MOESS/CostModel_LogEuclidean.cppsrc/Field/XFieldSpacetime_Instantiate_4D.cppsrc/Field/FieldSpacetime_Instantiate_4D.cppsrc/Field/XFieldVolume_Instantiate_4D.cppd99cecbb3795e08b905095ec3e90332696098ac91539954778000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduun-instantiated so i can test some things, previous push had wrong include 2018-10-19 09:12:58 -0400d99cecbb3795e08b905095ec3e90332696098ac9un-instantiated so i can test some things, previous push had wrong includeeditsrc/Field/Element/ElementXFieldVolume_Instantiate_3D.cppeditsrc/Meshing/EGTess/XFieldDomain.cppeditsrc/Field/XFieldVolume_Instantiate_4D.cppeditsrc/Adaptation/MOESS/NodalMetrics.cppeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/Eigen/MatrixSymS_Eigen_4x4.cppeditsrc/Field/FieldSpacetime_CG_Cell_Instantiate_4D.cppeditsrc/Meshing/avro/MesherInterface_avro.cppeditsrc/Field/XFieldSpacetime_Instantiate_4D.cppeditsrc/Adaptation/MOESS/CostModel_LogEuclidean.cppeditsrc/Field/Field_CG_CellConstructor.cppedittest/unit/UnitGrids/XField_KuhnFreudenthal_btest.cppeditsrc/Field/FieldSpacetime_Instantiate_4D.cppeditsrc/Adaptation/TargetMetric.cppeditsrc/Adaptation/MOESS/CostModel_FeFloa.cpptest/system/Adaptation/SolverInterface_DGAdvective_btest.cpp9f48ee7fbc8df3430fb3b01ddc282891b65e74881539954797000https://acdl.mit.edu/csi/user/ursachiursachiursachi@mit.eduSolver interface unit tests 2018-10-19 09:13:17 -04009f48ee7fbc8df3430fb3b01ddc282891b65e7488Solver interface unit testsedittest/system/Adaptation/SolverInterface_DGAdvective_btest.cpptest/system/Adaptation/SolverInterface_DGBR2_btest.cpp228799164dc319d4c74dcac1a8616faec9dc523c1539954851000https://acdl.mit.edu/csi/user/ursachiursachiursachi@mit.eduSolver interface unit test for DGBR2 2018-10-19 09:14:11 -0400228799164dc319d4c74dcac1a8616faec9dc523cSolver interface unit test for DGBR2edittest/system/Adaptation/SolverInterface_DGBR2_btest.cpptest/sandbox/Adapt2D_DGBR2_L2_ASExp_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_L2_ASExp_toy.cppsrc/pde/OutputCell_SolutionError.htest/system/Asymptotic/ErrorEstimateOrder_2D_CG_Triangle_AD_Boundary_btest.cpp38fa9bb023ad677eeba474d3034652b6a549998f1539959394000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edugetting final things off of devastator 2018-10-19 10:29:54 -040038fa9bb023ad677eeba474d3034652b6a549998fgetting final things off of devastatoraddtest/system/Asymptotic/ErrorEstimateOrder_2D_CG_Triangle_AD_Boundary_btest.cppaddtest/sandbox/Adapt2D_DGBR2_L2_ASExp_toy.cppaddsrc/pde/OutputCell_SolutionError.haddtest/sandbox/Adapt2D_Galerkin_Stabilized_L2_ASExp_toy.cppsrc/Meshing/EGTess/XFieldDomain.cppsrc/Meshing/EGTess/XFieldDomain_impl.h2222e5e864484a31200912a4eefe675e65b11ea21539961084000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edupremerge 2018-10-19 10:58:04 -04002222e5e864484a31200912a4eefe675e65b11ea2premergeeditsrc/Meshing/EGTess/XFieldDomain.cppeditsrc/Meshing/EGTess/XFieldDomain_impl.hsrc/Field/XFieldSpacetime_BoundaryTrace_Instantiate.cppsrc/Field/Field_CG_CellConstructor.cppsrc/Field/Partition/XField_Lagrange.cppsrc/Field/XFieldSpacetime_checkGrid_impl.hsrc/Field/CMakeLists.txtsrc/Field/Element/ElementAssociativitySpacetime.hsrc/Field/Field_CG_Topology.hsrc/Field/Element/ElementAssociativitySpacetime.cppsrc/Field/XFieldSpacetime_BoundaryTrace.h0c9fcdc0aba0c7c32f65f4ba8bb84e199b46310c1539964225000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edumissing instantiations, fixing a few undef references 2018-10-19 11:50:25 -04000c9fcdc0aba0c7c32f65f4ba8bb84e199b46310cmissing instantiations, fixing a few undef referenceseditsrc/Field/Field_CG_CellConstructor.cppeditsrc/Field/XFieldSpacetime_checkGrid_impl.heditsrc/Field/Element/ElementAssociativitySpacetime.haddsrc/Field/XFieldSpacetime_BoundaryTrace.heditsrc/Field/Partition/XField_Lagrange.cppeditsrc/Field/Field_CG_Topology.haddsrc/Field/XFieldSpacetime_BoundaryTrace_Instantiate.cppeditsrc/Field/CMakeLists.txtaddsrc/Field/Element/ElementAssociativitySpacetime.cpptest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cpp11d6228af743c6a50e8953012f612fa8cdfa27691539979707000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduRelaxed tolerance 2018-10-19 16:08:27 -040011d6228af743c6a50e8953012f612fa8cdfa2769Relaxed toleranceedittest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cppsrc/tools/system_call.cppsrc/tools/CMakeLists.txtsrc/tools/system_call.hsrc/Meshing/Embedding/MesherInterface_Embedding.cppsrc/Meshing/refine/MesherInterface_refine.cppsrc/Meshing/EPIC/MesherInterface_Epic.cppsrc/Meshing/FeFloa/MesherInterface_FeFloa.cppsrc/Meshing/refine/MesherInterface_refine_2D.cpp0f8bc14c3ad36aad27d90c2ac79d4ab8333deb781539980831000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUnified robuster system call function 2018-10-19 16:27:11 -04000f8bc14c3ad36aad27d90c2ac79d4ab8333deb78Unified robuster system call functioneditsrc/Meshing/FeFloa/MesherInterface_FeFloa.cppeditsrc/Meshing/refine/MesherInterface_refine.cppeditsrc/tools/CMakeLists.txteditsrc/Meshing/Embedding/MesherInterface_Embedding.cppaddsrc/tools/system_call.cppaddsrc/tools/system_call.heditsrc/Meshing/refine/MesherInterface_refine_2D.cppeditsrc/Meshing/EPIC/MesherInterface_Epic.cppsrc/Meshing/avro/MesherInterface_avro.cppsrc/Meshing/EGTess/XFieldDomain_impl.hsrc/Meshing/EGTess/XFieldDomain.hCMakeInclude/Finds/FindAVRO.cmake53c0166a41829f3f66891d3ff5233d32f9acfdce1539981234000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix mistakes I made related to label in XFieldDomain 2018-10-19 16:33:54 -040053c0166a41829f3f66891d3ff5233d32f9acfdceFix mistakes I made related to label in XFieldDomaineditCMakeInclude/Finds/FindAVRO.cmakeeditsrc/Meshing/EGTess/XFieldDomain.heditsrc/Meshing/EGTess/XFieldDomain_impl.heditsrc/Meshing/avro/MesherInterface_avro.cpptest/unit/LinearAlgebra/SparseLinAlg/SparseMatrix_CRS_MatrixS_btest.cppsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixS_Instantiate.cpptest/unit/LinearAlgebra/Heat1D_btest.h427d385ac6942686f924aa3ef78a7650bd921d031539990319000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed analyzer warnings 2018-10-19 19:05:19 -0400427d385ac6942686f924aa3ef78a7650bd921d03Fixed analyzer warningseditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixS_Instantiate.cppedittest/unit/LinearAlgebra/Heat1D_btest.hedittest/unit/LinearAlgebra/SparseLinAlg/SparseMatrix_CRS_MatrixS_btest.cpptest/unit/UnitGrids/CMakeLists.txtsrc/Field/Partition/LagrangeElementGroup.cpptest/unit/UnitGrids/XField_KuhnFreudenthal.htest/unit/UnitGrids/XField_KuhnFreudenthal.cpptest/unit/UnitGrids/XField_KuhnFreudenthal_btest.cpp8bb6e723c91dee7bac7853e5db6bfbb67dab73641540035977000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduprelim kuhn-freudenthal triangulation via avro 2018-10-20 07:46:17 -04008bb6e723c91dee7bac7853e5db6bfbb67dab7364prelim kuhn-freudenthal triangulation via avroedittest/unit/UnitGrids/XField_KuhnFreudenthal_btest.cppeditsrc/Field/Partition/LagrangeElementGroup.cppedittest/unit/UnitGrids/CMakeLists.txtedittest/unit/UnitGrids/XField_KuhnFreudenthal.cppedittest/unit/UnitGrids/XField_KuhnFreudenthal.hCMakeInclude/Builds/BuildPETSC.cmakesrc/Meshing/refine/CMakeLists.txtCMakeInclude/Builds/BuildNLOPT.cmake24123d85abc2ff2fc1e0a02c5ce88d01726e1dd51540124161000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpgraded builds to latest NLOPT and PETSc. 2018-10-21 08:16:01 -040024123d85abc2ff2fc1e0a02c5ce88d01726e1dd5Upgraded builds to latest NLOPT and PETSc.editsrc/Meshing/refine/CMakeLists.txteditCMakeInclude/Builds/BuildPETSC.cmakeeditCMakeInclude/Builds/BuildNLOPT.cmaketest/sandbox/Adapt2D_DGBR2_AD_ST_toy.cppsrc/Field/XFieldSpacetime.h3be6cc1858148c3eb2f9a09da15b86cbb068691e1540227376000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.eduCorrected comments, added filesysteming. 2018-10-22 12:56:16 -04003be6cc1858148c3eb2f9a09da15b86cbb068691eCorrected comments, added filesysteming.editsrc/Field/XFieldSpacetime.hedittest/sandbox/Adapt2D_DGBR2_AD_ST_toy.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cpptest/unit/BasisFunction/TraceToCellRefCoord_Pentatope_btest.cpptest/unit/UnitGrids/XField_KuhnFreudenthal.htest/unit/UnitGrids/XField_KuhnFreudenthal.cppsrc/BasisFunction/LagrangeDOFMap.htest/unit/UnitGrids/XField_KuhnFreudenthal_btest.cppsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.cppsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cpptest/unit/BasisFunction/LagrangeDOFMap_btest.cpp86a2ad5f8793a76ca895c9b8d13540ae1b531a171540232951000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edulagrange DOF map & trace2cellrefcoord + unit tests 2018-10-22 14:29:11 -040086a2ad5f8793a76ca895c9b8d13540ae1b531a17lagrange DOF map & trace2cellrefcoord + unit testsedittest/unit/UnitGrids/XField_KuhnFreudenthal.cppeditsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cppeditsrc/BasisFunction/LagrangeDOFMap.hedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppeditsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.cppedittest/unit/BasisFunction/LagrangeDOFMap_btest.cppedittest/unit/UnitGrids/XField_KuhnFreudenthal.hedittest/unit/UnitGrids/XField_KuhnFreudenthal_btest.cppedittest/unit/BasisFunction/TraceToCellRefCoord_Pentatope_btest.cpptest/unit/UnitGrids/CMakeLists.txttest/unit/UnitGrids/XField4D_1Ptope_X1_1Group_btest.cpptest/unit/UnitGrids/XField4D_1Ptope_X1_1Group.htest/unit/UnitGrids/XField4D_1Ptope_X1_1Group.cppsrc/Topology/ElementTopology.h3eadd2335b886d1efab3c0fc06b870a54e7d32b61540243262000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.eduAdded some 4D stuff and some comments to help clarify things as I come back to them. 2018-10-22 17:21:02 -04003eadd2335b886d1efab3c0fc06b870a54e7d32b6Added some 4D stuff and some comments to help clarify things as I come back to them.addtest/unit/UnitGrids/XField4D_1Ptope_X1_1Group.cppeditsrc/Topology/ElementTopology.hedittest/unit/UnitGrids/CMakeLists.txtaddtest/unit/UnitGrids/XField4D_1Ptope_X1_1Group_btest.cppaddtest/unit/UnitGrids/XField4D_1Ptope_X1_1Group.hsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.cpptest/unit/BasisFunction/TraceToCellRefCoord_Pentatope_btest.cpptest/unit/BasisFunction/LagrangeDOFMap_btest.cppsrc/BasisFunction/LagrangeDOFMap.hea2f939a21a5d950238e9a5efdb0cd528c7d4d581540243842000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edulagrange dof map testing 2018-10-22 17:30:42 -0400ea2f939a21a5d950238e9a5efdb0cd528c7d4d58lagrange dof map testingeditsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.cppedittest/unit/BasisFunction/TraceToCellRefCoord_Pentatope_btest.cppeditsrc/BasisFunction/LagrangeDOFMap.hedittest/unit/BasisFunction/LagrangeDOFMap_btest.cppsrc/Meshing/EGTess/EGTessModel_aflr4.cppsrc/Meshing/EGTess/CMakeLists.txtCMakeInclude/Finds/FindAFLR.cmakedf98ffdc78a5c09fb752ce257551afcb49828ff41540267564000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixes for latest AFLR 2018-10-23 00:06:04 -0400df98ffdc78a5c09fb752ce257551afcb49828ff4Fixes for latest AFLReditsrc/Meshing/EGTess/CMakeLists.txteditCMakeInclude/Finds/FindAFLR.cmakeeditsrc/Meshing/EGTess/EGTessModel_aflr4.cppsrc/Meshing/refine/MultiScale_metric.cpptest/sandbox/Adapt3D_DG_AD_L2_MOESS_toy.cpptest/sandbox/Adapt3D_CG_AD_L2_MultiScale_toy.cppsrc/Meshing/refine/MultiScale_metric.htest/sandbox/Adapt3D_CG_AD_L2_MOESS_toy.cpp9c04be208668339378e0d1a8fc85f50aba4a04aa1540298571000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdates for L2 projection cases 2018-10-23 08:42:51 -04009c04be208668339378e0d1a8fc85f50aba4a04aaUpdates for L2 projection caseseditsrc/Meshing/refine/MultiScale_metric.cppedittest/sandbox/Adapt3D_CG_AD_L2_MultiScale_toy.cppedittest/sandbox/Adapt3D_DG_AD_L2_MOESS_toy.cppedittest/sandbox/Adapt3D_CG_AD_L2_MOESS_toy.cppeditsrc/Meshing/refine/MultiScale_metric.htest/sandbox/Adapt3D_CG_AD_L2_MultiScale_toy.cpp72373cbca48b0448d7eb3e21b0d444c076ac1ca81540298700000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduIndexing bug 2018-10-23 08:45:00 -040072373cbca48b0448d7eb3e21b0d444c076ac1ca8Indexing bugedittest/sandbox/Adapt3D_CG_AD_L2_MultiScale_toy.cppsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.cpptest/unit/BasisFunction/LagrangeDOFMap_btest.cppsrc/BasisFunction/LagrangeDOFMap.h912cf8be4c03c9de0e2d52f2463e02864a4a9dc61540300934000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edure-order lattice coordinates so we have canonical vertices first 2018-10-23 09:22:14 -0400912cf8be4c03c9de0e2d52f2463e02864a4a9dc6re-order lattice coordinates so we have canonical vertices firsteditsrc/BasisFunction/LagrangeDOFMap.heditsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.cppedittest/unit/BasisFunction/LagrangeDOFMap_btest.cppsrc/LinearAlgebra/DenseLinAlg/StaticSize/Eigen/MatrixSymS_Eigen_4x4.cppsrc/LinearAlgebra/DenseLinAlg/StaticSize/Eigen/MatrixSymS_Eigen_impl.hsrc/LinearAlgebra/DenseLinAlg/StaticSize/Eigen/MatrixSymS_Eigen_3x3.cppsrc/BasisFunction/LagrangeDOFMap.htest/unit/LinearAlgebra/DenseLinAlg/MatrixSymS_Eigen_btest.cppsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.cpptest/unit/BasisFunction/LagrangeDOFMap_btest.cppf7d8e753895f99206871d9a1d7bd88f1582459a71540305323000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edumoved eigenvalue calculation to impl + unit tests for 4x4 2018-10-23 10:35:23 -0400f7d8e753895f99206871d9a1d7bd88f1582459a7moved eigenvalue calculation to impl + unit tests for 4x4editsrc/LinearAlgebra/DenseLinAlg/StaticSize/Eigen/MatrixSymS_Eigen_3x3.cppeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/Eigen/MatrixSymS_Eigen_4x4.cppedittest/unit/BasisFunction/LagrangeDOFMap_btest.cppedittest/unit/LinearAlgebra/DenseLinAlg/MatrixSymS_Eigen_btest.cppeditsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.cppaddsrc/LinearAlgebra/DenseLinAlg/StaticSize/Eigen/MatrixSymS_Eigen_impl.heditsrc/BasisFunction/LagrangeDOFMap.hsrc/Field/Element/ElementAssociativitySpacetimeConstructor.cppsrc/Field/Partition/LagrangeElementGroup.cpptest/unit/UnitGrids/XField_KuhnFreudenthal.cpptest/unit/IO/Field/ElementAssociativitySpacetime_Pentatope_pattern.txtsrc/Field/Element/ElementAssociativitySpacetime.hsrc/BasisFunction/BasisFunctionSpacetime.hsrc/Field/Element/ElementAssociativitySpacetime.cppsrc/Field/Element/ElementAssociativitySpacetimeConstructor.hsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.htest/unit/Field/Element/ElementAssociativitySpacetime_Pentatope_btest.cppdbbe9b77bede72286cef37d12ed7be8e4d26e9bf1540316444000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduspacetime element associativity + unit tests 2018-10-23 13:40:44 -0400dbbe9b77bede72286cef37d12ed7be8e4d26e9bfspacetime element associativity + unit testsaddtest/unit/Field/Element/ElementAssociativitySpacetime_Pentatope_btest.cppedittest/unit/UnitGrids/XField_KuhnFreudenthal.cppeditsrc/Field/Element/ElementAssociativitySpacetimeConstructor.cppeditsrc/Field/Partition/LagrangeElementGroup.cppeditsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.heditsrc/Field/Element/ElementAssociativitySpacetime.heditsrc/BasisFunction/BasisFunctionSpacetime.heditsrc/Field/Element/ElementAssociativitySpacetimeConstructor.heditsrc/Field/Element/ElementAssociativitySpacetime.cppaddtest/unit/IO/Field/ElementAssociativitySpacetime_Pentatope_pattern.txttest/sandbox/Adapt3D_CG_AD_L2_MultiScale_toy.cpp3b81b4dc0e96f16ea5341d3f2ab7c46380ba7a191540318411000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded Triple BL to the MultiScale test 2018-10-23 14:13:31 -04003b81b4dc0e96f16ea5341d3f2ab7c46380ba7a19Added Triple BL to the MultiScale testedittest/sandbox/Adapt3D_CG_AD_L2_MultiScale_toy.cpptest/unit/Field/Element/ElementXFieldVolume_4D_Tetrahedron_btest.cppsrc/Field/Element/ElementAssociativitySpacetimeConstructor.cppsrc/Field/Element/ElementXFieldVolume_impl.hsrc/Field/Element/ElementXFieldVolume_Instantiate_4D.cpptest/unit/LinearAlgebra/DenseLinAlg/MatrixS_SVD_btest.cppsrc/Field/Element/ElementXFieldVolume_Instantiate_3D.cppsrc/Field/Element/ElementXFieldVolume.hsrc/Field/CMakeLists.txtsrc/LinearAlgebra/DenseLinAlg/StaticSize/SVD/MatrixS_SVD_lapack_double.cppsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Real_Instantiate.cpptest/unit/Field/Element/ElementXFieldSpacetime_Pentatope_btest.cpp90497ea4545b8c8785e14a7c3c81bed3fdd09a451540326485000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edunormal of tet in 4d via svd 2018-10-23 16:28:05 -040090497ea4545b8c8785e14a7c3c81bed3fdd09a45normal of tet in 4d via svdaddsrc/Field/Element/ElementXFieldVolume_Instantiate_4D.cppeditsrc/Field/Element/ElementXFieldVolume_impl.heditsrc/Field/CMakeLists.txtaddtest/unit/Field/Element/ElementXFieldVolume_4D_Tetrahedron_btest.cppedittest/unit/LinearAlgebra/DenseLinAlg/MatrixS_SVD_btest.cppeditsrc/Field/Element/ElementXFieldVolume_Instantiate_3D.cppeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Real_Instantiate.cppeditsrc/Field/Element/ElementXFieldVolume.heditsrc/LinearAlgebra/DenseLinAlg/StaticSize/SVD/MatrixS_SVD_lapack_double.cppeditsrc/Field/Element/ElementAssociativitySpacetimeConstructor.cppaddtest/unit/Field/Element/ElementXFieldSpacetime_Pentatope_btest.cpptest/unit/Field/Element/ElementXFieldVolume_4D_Tetrahedron_btest.cppsrc/Field/Element/ElementXFieldVolume_Instantiate_4D.cppb6d5e0d9b61b7da47f1ba388ca9c2472cbc083e11540329037000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edufinish implementation of tet normal in 4d 2018-10-23 17:10:37 -0400b6d5e0d9b61b7da47f1ba388ca9c2472cbc083e1finish implementation of tet normal in 4deditsrc/Field/Element/ElementXFieldVolume_Instantiate_4D.cppedittest/unit/Field/Element/ElementXFieldVolume_4D_Tetrahedron_btest.cppsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_Det.hsrc/Field/Element/ElementXFieldSpacetime_Instantiate_4D.cpptest/unit/LinearAlgebra/DenseLinAlg/MatrixS_Det_btest.cpptest/unit/Field/Element/ElementXFieldSpacetime_Pentatope_btest.cppsrc/Field/Element/ElementXFieldSpacetime_impl.h45ac84e3e8078a1ba7ce80b777460f31b4c9b7071540331058000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduelementxfieldspacetime jacobian + volume + unit tests 2018-10-23 17:44:18 -040045ac84e3e8078a1ba7ce80b777460f31b4c9b707elementxfieldspacetime jacobian + volume + unit testseditsrc/Field/Element/ElementXFieldSpacetime_Instantiate_4D.cppeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_Det.hedittest/unit/Field/Element/ElementXFieldSpacetime_Pentatope_btest.cppeditsrc/Field/Element/ElementXFieldSpacetime_impl.hedittest/unit/LinearAlgebra/DenseLinAlg/MatrixS_Det_btest.cppsrc/Field/XFieldSpacetime_checkGrid_impl.htest/unit/UnitGrids/XField_KuhnFreudenthal.cppa758ee6ea087bd54514ff0d37f7e889451a9ae6e1540332058000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.educonstructed a 4d xfield! 2018-10-23 18:00:58 -0400a758ee6ea087bd54514ff0d37f7e889451a9ae6econstructed a 4d xfield!edittest/unit/UnitGrids/XField_KuhnFreudenthal.cppeditsrc/Field/XFieldSpacetime_checkGrid_impl.htest/unit/UnitGrids/XField_KuhnFreudenthal_btest.cpp3cdddaeaebacf9a0adbb54a4af314ca3b937440d1540332410000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduwrap kuhn freudenthal triangulation around SANS_AVRO ifdef 2018-10-23 18:06:50 -04003cdddaeaebacf9a0adbb54a4af314ca3b937440dwrap kuhn freudenthal triangulation around SANS_AVRO ifdefedittest/unit/UnitGrids/XField_KuhnFreudenthal_btest.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppd89efe7a9b63f39d34d348560dbd24178bbd46861540378857000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edustill cant remember how to trigger dummy commit... 2018-10-24 07:00:57 -0400d89efe7a9b63f39d34d348560dbd24178bbd4686still cant remember how to trigger dummy commit...edittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cpp94051e10eed5dc9586975037d964c7221e4949771540383919000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduand again... 2018-10-24 08:25:19 -040094051e10eed5dc9586975037d964c7221e494977and again...edittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cpp67ae6386736681a836d70b24d0bd356f0e2a79501540386433000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edutrailing whitespace 2018-10-24 09:07:13 -040067ae6386736681a836d70b24d0bd356f0e2a7950trailing whitespaceedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppCMakeInclude/Finds/FindREFINE.cmake885820b13a5d5d8c358d874a97566059a47b2ea41540404345000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduTweak to refine build 2018-10-24 14:05:45 -0400885820b13a5d5d8c358d874a97566059a47b2ea4Tweak to refine buildeditCMakeInclude/Finds/FindREFINE.cmaketest/unit/Field/Element/CMakeLists.txte124486b84f19e335dde1c98d69055577a32cfbc1540405992000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduBumped up timing more for Hex Lagrange Cache test 2018-10-24 14:33:12 -0400e124486b84f19e335dde1c98d69055577a32cfbcBumped up timing more for Hex Lagrange Cache testedittest/unit/Field/Element/CMakeLists.txttest/fenv.h1476b2d53a9fb5dded5763c1b0cb73d416de16461540406743000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed missing feenableexcept on MacOS, thus enabling us to turn on USE_TRAP_FP in ccmake in order to catch NaNs in runtime. 2018-10-24 14:45:43 -04001476b2d53a9fb5dded5763c1b0cb73d416de1646Fixed missing feenableexcept on MacOS, thus enabling us to turn on USE_TRAP_FP in ccmake in order to catch NaNs in runtime.addtest/fenv.hsrc/pde/AnalyticFunction/ScalarFunction3D.htest/sandbox/Adapt3D_L2Project_MOESS_toy.cppsrc/Adaptation/MOESS/SolverInterface_L2Project.hsrc/Adaptation/MeshAdapter.cppfa2019d273473ee06a0c4a0facc1381e66ea45721540409177000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded L2 Projection solver interface 2018-10-24 15:26:17 -0400fa2019d273473ee06a0c4a0facc1381e66ea4572Added L2 Projection solver interfaceeditsrc/Adaptation/MeshAdapter.cppaddsrc/Adaptation/MOESS/SolverInterface_L2Project.haddtest/sandbox/Adapt3D_L2Project_MOESS_toy.cppeditsrc/pde/AnalyticFunction/ScalarFunction3D.htest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_MultiScale_toy.cppb501be9e30efdbe12505e583ae5488a9cb5ae75b1540409324000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduGalerkin TripleBoundaryLayer case using MultiScale metric 2018-10-24 15:28:44 -0400b501be9e30efdbe12505e583ae5488a9cb5ae75bGalerkin TripleBoundaryLayer case using MultiScale metricaddtest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_MultiScale_toy.cpptest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppb78ca0c1947f54b846aebba5d56eb4cbadc6d93f1540411748000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edugit jenkins not working...dummy commit 2018-10-24 16:09:08 -0400b78ca0c1947f54b846aebba5d56eb4cbadc6d93fgit jenkins not working...dummy commitedittest/sandbox/Adapt3D_Mesh_Optimizer_toy.cpptest/sandbox/Adapt3D_L2Project_MOESS_toy.cpp6a2f285bd5fa41a4b68dbb4979720ee9324564821540415612000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded CG for L2Projection 2018-10-24 17:13:32 -04006a2f285bd5fa41a4b68dbb4979720ee932456482Added CG for L2Projectionedittest/sandbox/Adapt3D_L2Project_MOESS_toy.cpptest/unit/pde/AnalyticFunction/AD_TripleBL_Solutions.nbtest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cpptest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cpp7a3158cc6f1f0ba56e9fc46516b5b6257e3da9251540418297000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduadded boundary functional and mathematica notebook for computing exact solutions 2018-10-24 17:58:17 -04007a3158cc6f1f0ba56e9fc46516b5b6257e3da925added boundary functional and mathematica notebook for computing exact solutionsaddtest/unit/pde/AnalyticFunction/AD_TripleBL_Solutions.nbedittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppedittest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cpptest/system/Asymptotic/ErrorEstimateOrder_2D_CG_Triangle_AD_Boundary_btest.cppc7edba4b6b998eb0aa3691817c9a65cf838ecf0a1540419239000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduremoving unworking test from repo 2018-10-24 18:13:59 -0400c7edba4b6b998eb0aa3691817c9a65cf838ecf0aremoving unworking test from repodeletetest/system/Asymptotic/ErrorEstimateOrder_2D_CG_Triangle_AD_Boundary_btest.cppsrc/Adaptation/MOESS/MOESSParams.h0f244c60d7a5027bd59c70071671293f7509dba51540419266000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educhanged default to 1.0 for Frob constraint 2018-10-24 18:14:26 -04000f244c60d7a5027bd59c70071671293f7509dba5changed default to 1.0 for Frob constrainteditsrc/Adaptation/MOESS/MOESSParams.hsrc/pde/AnalyticFunction/ScalarFunction1D.cppsrc/pde/AnalyticFunction/ScalarFunction1D.hd464b34e7c90d6af277f36c8454455d2ca9964d31540419283000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduadded scale and offset to 1D BL 2018-10-24 18:14:43 -0400d464b34e7c90d6af277f36c8454455d2ca9964d3added scale and offset to 1D BLeditsrc/pde/AnalyticFunction/ScalarFunction1D.cppeditsrc/pde/AnalyticFunction/ScalarFunction1D.htest/sandbox/Adapt3D_L2Project_MOESS_toy.cpp052a06fe10703a75182dbc06334714abb2dac19f1540421890000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMissing include 2018-10-24 18:58:10 -0400052a06fe10703a75182dbc06334714abb2dac19fMissing includeedittest/sandbox/Adapt3D_L2Project_MOESS_toy.cpptest/sandbox/Adapt3D_Mesh_Optimizer_toy.cpp0e32c58d55acda92b25b41214780920f66e3535a1540427736000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.educhange case 2018-10-24 20:35:36 -04000e32c58d55acda92b25b41214780920f66e3535achange caseedittest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppsrc/BasisFunction/ElementRidge.hsrc/Topology/ElementTopology.hsrc/BasisFunction/ElementRidge.cppec53b61adec10651fbe926b1fcbb798b6e7d3fc21540470508000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduelement ridge (TopoDim-2 elements) needed to construct 4d elems 2018-10-25 08:28:28 -0400ec53b61adec10651fbe926b1fcbb798b6e7d3fc2element ridge (TopoDim-2 elements) needed to construct 4d elemsaddsrc/BasisFunction/ElementRidge.heditsrc/Topology/ElementTopology.haddsrc/BasisFunction/ElementRidge.cppsrc/Meshing/EGADS/EGModel.cppsrc/Meshing/EGTess/XFieldDomain_impl.hsrc/Meshing/EGTess/XFieldDomain.cppsrc/Meshing/EGADS/EGModel.hsrc/Meshing/EGTess/XFieldDomain.h8f118ba23d54d3f377a95891acaa4ee0b89dfe041540470608000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduxfielddomain holds ego children not SANS::EGObject, reason is because tesseract geometry entities are not technically ego's though avro does define a unique ego for each entity 2018-10-25 08:30:08 -04008f118ba23d54d3f377a95891acaa4ee0b89dfe04xfielddomain holds ego children not SANS::EGObject, reason is because tesseract geometry entities are not technically ego's though avro does define a unique ego for each entityeditsrc/Meshing/EGTess/XFieldDomain.heditsrc/Meshing/EGADS/EGModel.heditsrc/Meshing/EGADS/EGModel.cppeditsrc/Meshing/EGTess/XFieldDomain_impl.heditsrc/Meshing/EGTess/XFieldDomain.cppsrc/Adaptation/MOESS/NLOPT/ImpliedMetric_Optimizer_NLOPT.cppsrc/Adaptation/MOESS/NodalMetrics.cppsrc/Adaptation/TargetMetric.cppsrc/Adaptation/MOESS/CostModel_FeFloa.cppsrc/Adaptation/MOESS/ErrorModel.cppsrc/Field/Field_NodalView_Spacetime.cppsrc/Meshing/avro/MesherInterface_avro.cppsrc/Adaptation/MOESS/CostModel_LogEuclidean.cpp509dcfe4915d9756c0201670cda08fb3e6a210361540470778000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduinstantiations for 4d target metric matching 2018-10-25 08:32:58 -0400509dcfe4915d9756c0201670cda08fb3e6a21036instantiations for 4d target metric matchingeditsrc/Adaptation/TargetMetric.cppeditsrc/Adaptation/MOESS/CostModel_FeFloa.cppeditsrc/Adaptation/MOESS/ErrorModel.cppeditsrc/Adaptation/MOESS/NLOPT/ImpliedMetric_Optimizer_NLOPT.cppeditsrc/Field/Field_NodalView_Spacetime.cppeditsrc/Adaptation/MOESS/CostModel_LogEuclidean.cppeditsrc/Meshing/avro/MesherInterface_avro.cppeditsrc/Adaptation/MOESS/NodalMetrics.cpptest/unit/Field/Element/ElementXFieldVolume_4D_Tetrahedron_btest.cppsrc/Field/Field_CG_CellConstructor.hsrc/Field/Field_CG_CellConstructor.cppsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatMul/MatMul_Native_Real.cppsrc/Field/Element/ElementXFieldVolume_Instantiate_4D.cppsrc/Meshing/Adaptive/AnalyticMetrics/MetricField.htest/unit/UnitGrids/XField_KuhnFreudenthal_btest.cppsrc/Adaptation/MeshAdapter.cppsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatMul/MatMul_Native_MatrixD_Instantiate.cppsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cpptest/unit/UnitGrids/XField_KuhnFreudenthal.htest/unit/UnitGrids/XField_KuhnFreudenthal.cppsrc/Adaptation/MOESS/ReferenceElementCost.hsrc/Field/Element/ElementXFieldSpacetime_Instantiate_4D.cpptest/unit/Field/Field4D_CG_Pentatope_btest.cppsrc/Field/Field_CG_Topology.hsrc/Field/FieldSpacetime_Instantiate_4D.cpptest/unit/BasisFunction/LagrangeDOFMap_btest.cppsrc/Field/CellToTraceAssociativity.cppsrc/Field/Field_CG_Topology.cppsrc/Field/Element/ElementXFieldJacobianEquilateral.cppsrc/BasisFunction/CMakeLists.txtefda5d1fe5b408bc1bd0adb88d0daf5d1e7304941540470841000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduCG field construction for TopoD4 meshes, tested on p=1 2018-10-25 08:34:01 -0400efda5d1fe5b408bc1bd0adb88d0daf5d1e730494CG field construction for TopoD4 meshes, tested on p=1editsrc/Meshing/Adaptive/AnalyticMetrics/MetricField.hedittest/unit/BasisFunction/LagrangeDOFMap_btest.cppeditsrc/Field/Element/ElementXFieldSpacetime_Instantiate_4D.cppeditsrc/Adaptation/MeshAdapter.cppeditsrc/Field/Field_CG_Topology.haddtest/unit/Field/Field4D_CG_Pentatope_btest.cppeditsrc/Field/Field_CG_Topology.cppedittest/unit/Field/Element/ElementXFieldVolume_4D_Tetrahedron_btest.cppedittest/unit/UnitGrids/XField_KuhnFreudenthal.cppeditsrc/Field/FieldSpacetime_Instantiate_4D.cppeditsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatMul/MatMul_Native_Real.cppeditsrc/Field/Element/ElementXFieldVolume_Instantiate_4D.cppeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppeditsrc/Field/Field_CG_CellConstructor.hedittest/unit/UnitGrids/XField_KuhnFreudenthal_btest.cppeditsrc/Adaptation/MOESS/ReferenceElementCost.heditsrc/Field/CellToTraceAssociativity.cppeditsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatMul/MatMul_Native_MatrixD_Instantiate.cppedittest/unit/UnitGrids/XField_KuhnFreudenthal.heditsrc/BasisFunction/CMakeLists.txteditsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cppeditsrc/Field/Field_CG_CellConstructor.cppeditsrc/Field/Element/ElementXFieldJacobianEquilateral.cpptest/sandbox/Adapt4D_Mesh_Optimizer_toy.cppbe731f9d74be406c0c0c680e3067cd64e0a6e7071540470895000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edutarget metric matching in 4d sandbox 2018-10-25 08:34:55 -0400be731f9d74be406c0c0c680e3067cd64e0a6e707target metric matching in 4d sandboxaddtest/sandbox/Adapt4D_Mesh_Optimizer_toy.cppsrc/pde/IBL/PDEIBLUniField.hsrc/PanelMethod/ProjectionToQauxi_IBL.hsrc/pde/IBL/VarInterpret2D.hb74b6192badadada958d0cd40a9d68e9b1c0d35e1540472421000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactored projection to Qauxi_IBL by unifying implementations for DuplicateField and UniField IBL 2018-10-25 09:00:21 -0400b74b6192badadada958d0cd40a9d68e9b1c0d35eRefactored projection to Qauxi_IBL by unifying implementations for DuplicateField and UniField IBLeditsrc/pde/IBL/VarInterpret2D.heditsrc/pde/IBL/PDEIBLUniField.heditsrc/PanelMethod/ProjectionToQauxi_IBL.hsrc/BasisFunction/ElementRidge.hsrc/BasisFunction/ElementRidge.cppsrc/Field/Element/ElementXFieldJacobianEquilateral.cpptest/unit/BasisFunction/ElementRidge_btest.cppe82134984dae6bce94215b8d518ea7a46ff84b5c1540474381000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduelement ridge unit test + equilateral pentatope jacobian 2018-10-25 09:33:01 -0400e82134984dae6bce94215b8d518ea7a46ff84b5celement ridge unit test + equilateral pentatope jacobianeditsrc/BasisFunction/ElementRidge.cppeditsrc/Field/Element/ElementXFieldJacobianEquilateral.cppeditsrc/BasisFunction/ElementRidge.haddtest/unit/BasisFunction/ElementRidge_btest.cppsrc/Field/Element/ElementXFieldSpacetime_Instantiate_4D.cpptest/sandbox/Adapt4D_Mesh_Optimizer_toy.cppsrc/Field/Element/ElementXFieldJacobianEquilateral.msrc/Field/Element/ElementXFieldJacobianEquilateral.cpptest/unit/Field/Element/ElementXFieldSpacetime_Pentatope_btest.cpp127b1bcd62a8a07e01ade765e9e97b48a645a5211540481359000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edufixed bug with equilateral pentatope jacobian + matlab script + unit test on implied metric 2018-10-25 11:29:19 -0400127b1bcd62a8a07e01ade765e9e97b48a645a521fixed bug with equilateral pentatope jacobian + matlab script + unit test on implied metricedittest/unit/Field/Element/ElementXFieldSpacetime_Pentatope_btest.cppeditsrc/Field/Element/ElementXFieldSpacetime_Instantiate_4D.cppaddsrc/Field/Element/ElementXFieldJacobianEquilateral.medittest/sandbox/Adapt4D_Mesh_Optimizer_toy.cppeditsrc/Field/Element/ElementXFieldJacobianEquilateral.cppsrc/Adaptation/MOESS/MOESSParams.htest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cpptest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cpptest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_MultiScale_toy.cpp2944ed8960ed7778759ba38d94d06eb470101c441540482086000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduadded a boundary output for the triple BL, various clean ups, reverting to 0.25 for the default param 2018-10-25 11:41:26 -04002944ed8960ed7778759ba38d94d06eb470101c44added a boundary output for the triple BL, various clean ups, reverting to 0.25 for the default paramedittest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_MultiScale_toy.cppedittest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppeditsrc/Adaptation/MOESS/MOESSParams.hedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppedittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBLUniField_Panel_btest.cppsrc/pde/IBL/PDEIBLUniField.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBLUniField_Panel_btest.cppsrc/pde/IBL/SetSolnDofCell_IBL2D.htest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBLUniField_NACA0004_LamiBL_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppsrc/pde/IBL/BCIBLUniField.hsrc/pde/IBL/ElementProjectionIBLoutput_L2.hsrc/pde/IBL/PDEIBLUniField.hsrc/pde/IBL/IBLVarDataType2D.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppsrc/pde/IBL/VarInterpret2D.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cppsrc/pde/IBL/BCIBLUniField.cpp622402af5615624eecb14d4712003f8658db960c1540484063000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactored UniField IBL variable interpreter. More work needed to propagate to everywhere oc the code base. 2018-10-25 12:14:23 -0400622402af5615624eecb14d4712003f8658db960cRefactored UniField IBL variable interpreter. More work needed to propagate to everywhere oc the code base.editsrc/pde/IBL/PDEIBLUniField.cppeditsrc/pde/IBL/SetSolnDofCell_IBL2D.hedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBLUniField_Panel_btest.cppedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBLUniField_Panel_btest.cppeditsrc/pde/IBL/ElementProjectionIBLoutput_L2.heditsrc/pde/IBL/BCIBLUniField.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppeditsrc/pde/IBL/BCIBLUniField.cppeditsrc/pde/IBL/IBLVarDataType2D.heditsrc/pde/IBL/VarInterpret2D.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBLUniField_NACA0004_LamiBL_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cppeditsrc/pde/IBL/PDEIBLUniField.hsrc/Field/Element/GalerkinWeightedIntegral_New.hsrc/PanelMethod/ProjectionToQauxi_IBL.htest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test.txtsrc/pde/IBL/PDEIBLUniField.hb3c5838fa72d2845f66a8bea5a54a7c3ae177ebe1540494134000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduMinor refactoring. Updated pyrite file. 2018-10-25 15:02:14 -0400b3c5838fa72d2845f66a8bea5a54a7c3ae177ebeMinor refactoring. Updated pyrite file.editsrc/Field/Element/GalerkinWeightedIntegral_New.heditsrc/pde/IBL/PDEIBLUniField.heditsrc/PanelMethod/ProjectionToQauxi_IBL.hedittest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test.txtsrc/Field/Element/GalerkinWeightedIntegral_New.hsrc/pde/IBL/ElementProjectionIBLoutput_L2.hsrc/pde/IBL/PDEIBLUniField.h23a512b59f9d817838e7c34af8a41589c2fb6abd1540496851000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactoring. Realizing that using ctau is fragile since log(ctau) is frequently needed to compute n_tilde but ctau can undershoot through below zero. 2018-10-25 15:47:31 -040023a512b59f9d817838e7c34af8a41589c2fb6abdRefactoring. Realizing that using ctau is fragile since log(ctau) is frequently needed to compute n_tilde but ctau can undershoot through below zero.editsrc/pde/IBL/ElementProjectionIBLoutput_L2.heditsrc/pde/IBL/PDEIBLUniField.heditsrc/Field/Element/GalerkinWeightedIntegral_New.hsrc/Field/FieldBaseLine_Instantiate.cpptest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_refactoring_Test.txtsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatMul/MatMul_Native_Real.cppsrc/pde/IBL/PDEIBLUniField.cppsrc/pde/IBL/SetSolnDofCell_IBL2D.htest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBLUniField_NACA0004_LamiBL_btest.cppsrc/BasisFunction/BasisFunctionLine_Projection.cppsrc/pde/IBL/BCIBLUniField.hsrc/pde/IBL/ElementProjectionIBLoutput_L2.hsrc/pde/IBL/PDEIBLUniField.hsrc/Field/output_Tecplot.cppsrc/pde/IBL/IBLVarDataType2D.htest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne64_a0_unifield.txtsrc/Field/FieldLine_DG_Cell_Instantiate_2D.cppsrc/pde/IBL/VarInterpret2D.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cppsrc/Field/FieldLine_Instantiate_2D.cppsrc/pde/IBL/BCIBLUniField.cppdd5527c6d0eb9d71b8483faa7f3a30744744ffac1540564387000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactored UniField variable/eqns to use nt as a conservative quantity 1. Started a new pyrite file for coupled airfoilLaminar+wakeTurbulent case 2. Verified uncoupled IBL airfoil laminar case 2018-10-26 10:33:07 -0400dd5527c6d0eb9d71b8483faa7f3a30744744ffacRefactored UniField variable/eqns to use nt as a conservative quantityeditsrc/pde/IBL/ElementProjectionIBLoutput_L2.heditsrc/Field/FieldBaseLine_Instantiate.cppedittest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBLUniField_NACA0004_LamiBL_btest.cppeditsrc/pde/IBL/PDEIBLUniField.cppeditsrc/pde/IBL/VarInterpret2D.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cppeditsrc/pde/IBL/BCIBLUniField.haddtest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_refactoring_Test.txtedittest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne64_a0_unifield.txteditsrc/Field/FieldLine_Instantiate_2D.cppeditsrc/Field/FieldLine_DG_Cell_Instantiate_2D.cppeditsrc/Field/output_Tecplot.cppeditsrc/pde/IBL/IBLVarDataType2D.heditsrc/pde/IBL/SetSolnDofCell_IBL2D.heditsrc/pde/IBL/BCIBLUniField.cppeditsrc/BasisFunction/BasisFunctionLine_Projection.cppeditsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatMul/MatMul_Native_Real.cppeditsrc/pde/IBL/PDEIBLUniField.htest/unit/PanelMethod/ProjectionToQauxi_IBL_btest.cppsrc/PanelMethod/ProjectionToQauxi_IBL.hefbcd630b53163132755e40aad29ec4a0ceae64c1540568840000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRestored panel method unit test 2018-10-26 11:47:20 -0400efbcd630b53163132755e40aad29ec4a0ceae64cRestored panel method unit testedittest/unit/PanelMethod/ProjectionToQauxi_IBL_btest.cppeditsrc/PanelMethod/ProjectionToQauxi_IBL.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cpp99ec16b120b13488213218999a740c6f915e8d271540568924000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduTweaked iteration limit to wait until convergence 2018-10-26 11:48:44 -040099ec16b120b13488213218999a740c6f915e8d27Tweaked iteration limit to wait until convergenceedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cppsrc/Field/Element/GalerkinWeightedIntegral_New.htest/unit/pde/IBL/PDEIBLUniField2D_btest.cppsrc/pde/IBL/PDEIBL2D.htest/sandbox/Solve2D_Uncoupled_DGAdvective_IBL_toy.cpptest/unit/pde/IBL/PDEIBL2D_btest.cppsrc/pde/IBL/PDEIBLUniField.htest/sandbox/Solve2D_Uncoupled_DGAdvective_IBL_p0_toy.cpptest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_NACA0004_LamiBL_PTC_btest.cppsrc/pde/IBL/FluidModels.h5851028002a5bdec574a2362c97118e7b9445e161540578641000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactored constructors of IBL PDE and fluid models. Started PDEIBLUniField unit test. Other minor refactoring 2018-10-26 14:30:41 -04005851028002a5bdec574a2362c97118e7b9445e16Refactored constructors of IBL PDE and fluid models. Started PDEIBLUniField unit test. Other minor refactoringeditsrc/Field/Element/GalerkinWeightedIntegral_New.hedittest/sandbox/Solve2D_Uncoupled_DGAdvective_IBL_toy.cppedittest/unit/pde/IBL/PDEIBL2D_btest.cppeditsrc/pde/IBL/PDEIBL2D.heditsrc/pde/IBL/PDEIBLUniField.heditsrc/pde/IBL/FluidModels.hedittest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_NACA0004_LamiBL_PTC_btest.cppedittest/sandbox/Solve2D_Uncoupled_DGAdvective_IBL_p0_toy.cppaddtest/unit/pde/IBL/PDEIBLUniField2D_btest.cpptest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cppsrc/pde/AnalyticFunction/ScalarFunction2D.cppsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_AdvectionDiffusion2D_AUDUSUG.cppsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion2D.hsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_AdvectionDiffusion2D_AUDUSUG.cppsrc/pde/NDConvert/BCNDConvertSpaceTime2D.htest/unit/pde/AnalyticFunction/ScalarFunction2D_btest.cpptest/unit/UnitGrids/XField4D_1Ptope_X1_1Group_btest.cppsrc/pde/AnalyticFunction/ScalarFunction2D.ha65c96e56bffc46d0330665ae5983b7bc57137c51540578974000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.eduAdded 2D+T AD case, in progress, with assorted necessary changes. Still needs BC fix. Also added framework for 4D single pentatope unit grid. Should hopefully also include all necessary unit testing, as mapped from similar 1D cases to cases of interest. 2018-10-26 14:36:14 -0400a65c96e56bffc46d0330665ae5983b7bc57137c5Added 2D+T AD case, in progress, with assorted necessary changes. Still needs BC fix. Also added framework for 4D single pentatope unit grid. Should hopefully also include all necessary unit testing, as mapped from similar 1D cases to cases of interest.addtest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cppeditsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_AdvectionDiffusion2D_AUDUSUG.cppeditsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion2D.hedittest/unit/UnitGrids/XField4D_1Ptope_X1_1Group_btest.cppeditsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_AdvectionDiffusion2D_AUDUSUG.cppeditsrc/pde/NDConvert/BCNDConvertSpaceTime2D.hedittest/unit/pde/AnalyticFunction/ScalarFunction2D_btest.cppeditsrc/pde/AnalyticFunction/ScalarFunction2D.cppeditsrc/pde/AnalyticFunction/ScalarFunction2D.hsrc/Adaptation/MOESS/SolverInterface_L2Project.h36861cd5d6c88e6adf6114024c1e61dadba49f581540695272000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix typo 2018-10-27 22:54:32 -040036861cd5d6c88e6adf6114024c1e61dadba49f58Fix typoeditsrc/Adaptation/MOESS/SolverInterface_L2Project.hsrc/Adaptation/MOESS/NodalMetrics.cpptest/unit/Field/Field_NodalView_btest.cpptest/unit/Field/Element/ElementSpacetime_Pentatope_btest.cpptest/unit/UnitGrids/XField_KuhnFreudenthal.cpptest/unit/Adaptation/MOESS/CostModel_FeFloa_btest.cppsrc/Field/XFieldSpacetime_checkGrid_impl.htest/unit/Adaptation/MOESS/CostModel_LogEuclidian_btest.cpptest/sandbox/Adapt3D_Mesh_Optimizer_toy.cpptest/sandbox/Adapt4D_Mesh_Optimizer_toy.cppsrc/Field/Element/ElementSpacetime.htest/unit/IO/Field/ElementSpacetime_Pentatope_pattern.txta1e2ea59d8eb810861fb2e3193262d5a8333b81d1540830634000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edufield element pentatope tests 2018-10-29 12:30:34 -0400a1e2ea59d8eb810861fb2e3193262d5a8333b81dfield element pentatope testseditsrc/Adaptation/MOESS/NodalMetrics.cppedittest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppeditsrc/Field/XFieldSpacetime_checkGrid_impl.hedittest/sandbox/Adapt4D_Mesh_Optimizer_toy.cppedittest/unit/Adaptation/MOESS/CostModel_FeFloa_btest.cppeditsrc/Field/Element/ElementSpacetime.hedittest/unit/Field/Field_NodalView_btest.cppaddtest/unit/IO/Field/ElementSpacetime_Pentatope_pattern.txtaddtest/unit/Field/Element/ElementSpacetime_Pentatope_btest.cppedittest/unit/Adaptation/MOESS/CostModel_LogEuclidian_btest.cppedittest/unit/UnitGrids/XField_KuhnFreudenthal.cpptest/unit/Field/Element/ElementXFieldVolume_4D_Tetrahedron_btest.cppsrc/Field/Element/ElementXFieldSpacetime_impl.htest/unit/Adaptation/MOESS/CostModel_LogEuclidian_btest.cppsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.cppsrc/Field/Element/ElementXFieldSpacetime_Instantiate_4D.cpptest/sandbox/Adapt3D_Mesh_Optimizer_toy.cpptest/sandbox/Adapt4D_Mesh_Optimizer_toy.cpptest/unit/Field/Element/ElementXFieldSpacetime_Pentatope_btest.cpp3a945b072e553a6c953dd722266522c81edb58ec1540837274000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edudebugging costmodel_logeuclidean on topoD4 ping tests 2018-10-29 14:21:14 -04003a945b072e553a6c953dd722266522c81edb58ecdebugging costmodel_logeuclidean on topoD4 ping testseditsrc/Field/Element/ElementXFieldSpacetime_Instantiate_4D.cppedittest/unit/Field/Element/ElementXFieldVolume_4D_Tetrahedron_btest.cppedittest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppeditsrc/Field/Element/ElementXFieldSpacetime_impl.hedittest/unit/Field/Element/ElementXFieldSpacetime_Pentatope_btest.cppedittest/unit/Adaptation/MOESS/CostModel_LogEuclidian_btest.cppeditsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.cppedittest/sandbox/Adapt4D_Mesh_Optimizer_toy.cpptest/unit/UnitGrids/XField_KuhnFreudenthal.cpp841fa3ac96d485b804ce0652b8e6cd85f0ddf36a1540837524000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edubrace alignment 2018-10-29 14:25:24 -0400841fa3ac96d485b804ce0652b8e6cd85f0ddf36abrace alignmentedittest/unit/UnitGrids/XField_KuhnFreudenthal.cpptest/unit/Field/Element/ElementXFieldSpacetime_Pentatope_btest.cpp05d9602f05603613e903cd408d9d95de55ee05621540837605000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduuncomment xfieldspacetime_pentatope tests until actually implemented 2018-10-29 14:26:45 -040005d9602f05603613e903cd408d9d95de55ee0562uncomment xfieldspacetime_pentatope tests until actually implementededittest/unit/Field/Element/ElementXFieldSpacetime_Pentatope_btest.cpptest/unit/Field/Field4D_CG_Pentatope_btest.cppb10e2a70c89908208d325d0c32e58b7b0d757ba81540842383000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduunused defs 2018-10-29 15:46:23 -0400b10e2a70c89908208d325d0c32e58b7b0d757ba8unused defsedittest/unit/Field/Field4D_CG_Pentatope_btest.cpptest/unit/Adaptation/MOESS/CostModel_LogEuclidian_btest.cpptest/unit/Field/Field4D_CG_Pentatope_btest.cpptest/unit/Field/Field_NodalView_btest.cpptest/unit/UnitGrids/XField_KuhnFreudenthal.cpptest/unit/Adaptation/MOESS/CostModel_FeFloa_btest.cpp35a85df6949374dced038fe950f3f80ec858549b1540843765000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduundefined references without avro 2018-10-29 16:09:25 -040035a85df6949374dced038fe950f3f80ec858549bundefined references without avroedittest/unit/Field/Field4D_CG_Pentatope_btest.cppedittest/unit/UnitGrids/XField_KuhnFreudenthal.cppedittest/unit/Field/Field_NodalView_btest.cppedittest/unit/Adaptation/MOESS/CostModel_LogEuclidian_btest.cppedittest/unit/Adaptation/MOESS/CostModel_FeFloa_btest.cpptest/unit/Field/Field_NodalView_btest.cppfc63dd8bf04458360b6ebacb923a46be11b419451540846553000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edusign compare 2018-10-29 16:55:53 -0400fc63dd8bf04458360b6ebacb923a46be11b41945sign compareedittest/unit/Field/Field_NodalView_btest.cppsrc/Field/CMakeLists.txtd69d0e89e3924fde5af4fee063e5d5ac64af4f691540849010000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edumissing file to compile 2018-10-29 17:36:50 -0400d69d0e89e3924fde5af4fee063e5d5ac64af4f69missing file to compileeditsrc/Field/CMakeLists.txttest/unit/UnitGrids/XField_KuhnFreudenthal.cpp291579488fe3f224e288904f5b407018b80325e41540856864000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edulingering comma 2018-10-29 19:47:44 -0400291579488fe3f224e288904f5b407018b80325e4lingering commaedittest/unit/UnitGrids/XField_KuhnFreudenthal.cpptest/unit/BasisFunction/ElementFrame_btest.cppsrc/BasisFunction/ElementFrame.hsrc/Field/Field_CG_CellConstructor.cppsrc/BasisFunction/ElementFrame.cppsrc/Topology/ElementTopology.hsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cppsrc/Field/Field_CG_Topology.cppsrc/BasisFunction/CMakeLists.txt3ab0288e92a559782449b8053ad8de6e7d0ae1e81540857390000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduridge -> frame 2018-10-29 19:56:30 -04003ab0288e92a559782449b8053ad8de6e7d0ae1e8ridge -> frameaddtest/unit/BasisFunction/ElementFrame_btest.cppaddsrc/BasisFunction/ElementFrame.heditsrc/Topology/ElementTopology.heditsrc/Field/Field_CG_Topology.cppeditsrc/BasisFunction/CMakeLists.txteditsrc/Field/Field_CG_CellConstructor.cppaddsrc/BasisFunction/ElementFrame.cppeditsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cppsrc/BasisFunction/BasisFunctionVolume_Projection.cpptest/unit/Meshing/EGTess/XFieldDomain_btest.cppb1906b9e2e962b59ac9dcf8c8f0f145d3e10aacf1540859084000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduundef references 2018-10-29 20:24:44 -0400b1906b9e2e962b59ac9dcf8c8f0f145d3e10aacfundef referencesedittest/unit/Meshing/EGTess/XFieldDomain_btest.cppeditsrc/BasisFunction/BasisFunctionVolume_Projection.cppsrc/BasisFunction/ElementRidge.hsrc/BasisFunction/ElementRidge.cpptest/unit/BasisFunction/ElementRidge_btest.cppeb34c34c5e043eaae1142a8ef500151f30881a801540860029000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.educommit deleted files 2018-10-29 20:40:29 -0400eb34c34c5e043eaae1142a8ef500151f30881a80commit deleted filesdeletesrc/BasisFunction/ElementRidge.hdeletesrc/BasisFunction/ElementRidge.cppdeletetest/unit/BasisFunction/ElementRidge_btest.cpptest/sandbox/Adapt4D_Mesh_Optimizer_toy.cpp3e0d6b224f55c66e70082cdfaa2a48a0ef73d8031540860890000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduwrap ifdef SANS_AVRO further ahead 2018-10-29 20:54:50 -04003e0d6b224f55c66e70082cdfaa2a48a0ef73d803wrap ifdef SANS_AVRO further aheadedittest/sandbox/Adapt4D_Mesh_Optimizer_toy.cpptest/unit/CMakeLists.txt572e0a3348ff609a8a2812a2a2198d186a5138671540899022000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduomit spacetime pentatope btest from memcheck because it takes a long time, bump up timeout for it as well 2018-10-30 07:30:22 -0400572e0a3348ff609a8a2812a2a2198d186a513867omit spacetime pentatope btest from memcheck because it takes a long time, bump up timeout for it as welledittest/unit/CMakeLists.txtsrc/BasisFunction/BasisFunctionVolume_Projection.cpp18615b593ed776594892849e8ca2dc27d7b8ad2c1540899245000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduinstantiate matrixsyms4 projection for tets 2018-10-30 07:34:05 -040018615b593ed776594892849e8ca2dc27d7b8ad2cinstantiate matrixsyms4 projection for tetseditsrc/BasisFunction/BasisFunctionVolume_Projection.cppsrc/BasisFunction/BasisFunctionSpacetime_Projection.cppcad559eb743afdeb00b0e304a9c3bf0e5626ac3e1540904103000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edubasis function instantiate 2018-10-30 08:55:03 -0400cad559eb743afdeb00b0e304a9c3bf0e5626ac3ebasis function instantiateeditsrc/BasisFunction/BasisFunctionSpacetime_Projection.cppsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppfd701b114da5a549567b89ec0bc173a11fa888f51540905423000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edumatmul instantiation 2018-10-30 09:17:03 -0400fd701b114da5a549567b89ec0bc173a11fa888f5matmul instantiationeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cpptest/unit/Field/Element/ElementSpacetime_Pentatope_btest.cpp3be20e774c9d3f93a5ef2e64655e639c80d2b3061540907478000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edureduced number of orientations to make elementspacetime_pentatope test go faster 2018-10-30 09:51:18 -04003be20e774c9d3f93a5ef2e64655e639c80d2b306reduced number of orientations to make elementspacetime_pentatope test go fasteredittest/unit/Field/Element/ElementSpacetime_Pentatope_btest.cppCMakeInclude/CompilerFlags.cmake223306e7e341dcb37812c5f4dfb4a51179d1909f1540918475000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduRemove maybe uninitialized wanrings on gnu 8 2018-10-30 12:54:35 -0400223306e7e341dcb37812c5f4dfb4a51179d1909fRemove maybe uninitialized wanrings on gnu 8editCMakeInclude/CompilerFlags.cmakesrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppb5f5460cb2206d8912d4eac6bf3f08d4ec9157361540921443000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edulast instantiation i promise 2018-10-30 13:44:03 -0400b5f5460cb2206d8912d4eac6bf3f08d4ec915736last instantiation i promiseeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cpptest/unit/Adaptation/MOESS/CostModel_LogEuclidian_btest.cpp0d6f57c3e4d385d03ddf9fe3233b0e586061a7011540926555000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edubug in cost model log-euclidean test because of the vertex/step matrix ordering 2018-10-30 15:09:15 -04000d6f57c3e4d385d03ddf9fe3233b0e586061a701bug in cost model log-euclidean test because of the vertex/step matrix orderingedittest/unit/Adaptation/MOESS/CostModel_LogEuclidian_btest.cppsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppa56a785d748a3bfee93c5536a372ee7bf0be43961540933651000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduseriously this has to be the last one 2018-10-30 17:07:31 -0400a56a785d748a3bfee93c5536a372ee7bf0be4396seriously this has to be the last oneeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppa19700f53d792fa198e0e127393ad73426374e4e1540943266000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edulast one! 2018-10-30 19:47:46 -0400a19700f53d792fa198e0e127393ad73426374e4elast one!editsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cpptest/sandbox/Adapt4D_Mesh_Optimizer_toy.cppf91c9e04bfb4b733cee8c7177bb679c7e4f861dc1540950492000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edutrigger commit 2018-10-30 21:48:12 -0400f91c9e04bfb4b733cee8c7177bb679c7e4f861dctrigger commitedittest/sandbox/Adapt4D_Mesh_Optimizer_toy.cpptest/unit/Field/Element/ElementSpacetime_Pentatope_btest.cppfa5d2a37976738857f8601c6a2c60352d384978b1540982744000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduup to p=2 for element space time test because it's really slow 2018-10-31 06:45:44 -0400fa5d2a37976738857f8601c6a2c60352d384978bup to p=2 for element space time test because it's really slowedittest/unit/Field/Element/ElementSpacetime_Pentatope_btest.cppsrc/pde/IBL/IBLMiscClosures.hsrc/pde/IBL/PDEIBL2D.hsrc/pde/IBL/PDEIBL2D_impl.htest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBLUniField_NACA0004_LamiBL_btest.cppsrc/pde/IBL/BCIBL2D.hsrc/pde/IBL/SetTransitionFrontIBL2D_InteriorTraceGroup.hsrc/pde/IBL/IBL_Traits.hsrc/pde/IBL/QauxvInterpret2D.hsrc/pde/IBL/BCIBLUniField.htest/unit/pde/IBL/PDEIBL2D_btest.cppsrc/pde/IBL/ElementProjectionIBLoutput_L2.hsrc/pde/IBL/PDEIBLUniField.hsrc/pde/IBL/VarInterpret2D.h962561285120e22fcef76dff4a6c8d935e30db6a1541178943000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRevamped Qauxv/parameters API. 2018-11-02 13:15:43 -0400962561285120e22fcef76dff4a6c8d935e30db6aRevamped Qauxv/parameters API.editsrc/pde/IBL/SetTransitionFrontIBL2D_InteriorTraceGroup.hedittest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBLUniField_NACA0004_LamiBL_btest.cppeditsrc/pde/IBL/BCIBLUniField.heditsrc/pde/IBL/IBLMiscClosures.heditsrc/pde/IBL/VarInterpret2D.heditsrc/pde/IBL/PDEIBL2D_impl.heditsrc/pde/IBL/ElementProjectionIBLoutput_L2.heditsrc/pde/IBL/BCIBL2D.hedittest/unit/pde/IBL/PDEIBL2D_btest.cppaddsrc/pde/IBL/QauxvInterpret2D.heditsrc/pde/IBL/IBL_Traits.heditsrc/pde/IBL/PDEIBLUniField.heditsrc/pde/IBL/PDEIBL2D.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_iter_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_p0_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_p0_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpp2f61314d256d37380589a4fae04cddcc4509529b1541290595000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed typos 2018-11-03 20:16:35 -04002f61314d256d37380589a4fae04cddcc4509529bFixed typosedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_p0_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_p0_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_iter_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBLUniField_NACA0004_LamiBL_btest.cppsrc/PanelMethod/ProjectionToQauxi_IBL.hsrc/pde/IBL/BCIBLUniField.hsrc/PanelMethod/FunctionEvalQauxv_IBL.hsrc/pde/IBL/QauxvInterpret2D.hea2db2beb5058502b2a0b70812d091d0fdf362301541291100000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduPropagated more changes in IBL parameter API. Verified coupled IBL UniFIeld forced laminar case. 2018-11-03 20:25:00 -0400ea2db2beb5058502b2a0b70812d091d0fdf36230Propagated more changes in IBL parameter API. Verified coupled IBL UniFIeld forced laminar case.edittest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBLUniField_NACA0004_LamiBL_btest.cppeditsrc/PanelMethod/ProjectionToQauxi_IBL.heditsrc/pde/IBL/BCIBLUniField.heditsrc/PanelMethod/FunctionEvalQauxv_IBL.heditsrc/pde/IBL/QauxvInterpret2D.htest/system/AnalyticSolve/AnalyticSolve2D_DGAdvective_IBL_StagnationFlow_SingleElem_LamiBL_btest.cpptest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBLUniField_NACA0004_LamiBL_btest.cppsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.hc1fcdcd209b7fa7b4fe3fa57bb342dbbf122bf9d1541293189000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed more tests related to IBL parameter API 2018-11-03 20:59:49 -0400c1fcdcd209b7fa7b4fe3fa57bb342dbbf122bf9dFixed more tests related to IBL parameter APIedittest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBLUniField_NACA0004_LamiBL_btest.cppedittest/system/AnalyticSolve/AnalyticSolve2D_DGAdvective_IBL_StagnationFlow_SingleElem_LamiBL_btest.cppeditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.htest/system/AnalyticSolve/AnalyticSolve2D_DGAdvective_IBL_StagnationFlow_SingleElem_LamiBL_btest.cppc8f02c2820070eb12816d7e7bc7927b6535d2f931541294266000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduUpdate test/system/AnalyticSolve/AnalyticSolve2D_DGAdvective_IBL_StagnationFlow_SingleElem_LamiBL_btest.cpp 2018-11-03 21:17:46 -0400c8f02c2820070eb12816d7e7bc7927b6535d2f93Update test/system/AnalyticSolve/AnalyticSolve2D_DGAdvective_IBL_StagnationFlow_SingleElem_LamiBL_btest.cppedittest/system/AnalyticSolve/AnalyticSolve2D_DGAdvective_IBL_StagnationFlow_SingleElem_LamiBL_btest.cppsrc/pde/IBL/PDEIBL2D.hsrc/pde/IBL/PDEIBLUniField.htest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_NACA0004_LamiBL_btest.cpptest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_NACA0004_LamiBL_PTC_btest.cppcd12f7d25f2775a19c4505a2c4a47502e2c690121541294947000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduVerified two system tests with PDEIBL2D using LF flux. 2018-11-03 21:29:07 -0400cd12f7d25f2775a19c4505a2c4a47502e2c69012Verified two system tests with PDEIBL2D using LF flux.edittest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_NACA0004_LamiBL_btest.cppeditsrc/pde/IBL/PDEIBL2D.hedittest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_NACA0004_LamiBL_PTC_btest.cppeditsrc/pde/IBL/PDEIBLUniField.htest/system/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_NACA0004_LamiBL_btest.cppsrc/pde/IBL/PDEIBL2D_impl.h356dc6810f8e48aff0eb5cf967818ae0d80382e11541295178000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed uncoupled IBL HDG case 2018-11-03 21:32:58 -0400356dc6810f8e48aff0eb5cf967818ae0d80382e1Fixed uncoupled IBL HDG caseedittest/system/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_NACA0004_LamiBL_btest.cppeditsrc/pde/IBL/PDEIBL2D_impl.hsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion2D.htest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cppsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion2D.cpp954f5d6f7f9405bb1cd53af9cefe7839fcfbe15c1541477734000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.edu2D+T is running, working towards validation. 2018-11-05 23:15:34 -0500954f5d6f7f9405bb1cd53af9cefe7839fcfbe15c2D+T is running, working towards validation.edittest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cppeditsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion2D.heditsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion2D.cppsrc/Python/PyDict.hsrc/Python/PyDict.cppsrc/Python/InputException.hsrc/UserInterfaces/capsAIM/sansLIPAIM.cpptest/unit/Python/PyDict_btest.cppf07009a8c85068fcc1d1743b324b4776f041b07f1541507601000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded json parser to PyDict 2018-11-06 07:33:21 -0500f07009a8c85068fcc1d1743b324b4776f041b07fAdded json parser to PyDicteditsrc/Python/PyDict.heditsrc/UserInterfaces/capsAIM/sansLIPAIM.cppeditsrc/Python/InputException.heditsrc/Python/PyDict.cppedittest/unit/Python/PyDict_btest.cppsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion2D.hsrc/pde/AnalyticFunction/ScalarFunction2D.cpptest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cppsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion2D.cppsrc/pde/AnalyticFunction/ScalarFunction2D.hfc48b8da3d68d7efd16754ce824424088e5c77c41541625325000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.eduFixed formatting from vera++. Also reformulated 2D+T case for convergence investigation. 2018-11-07 16:15:25 -0500fc48b8da3d68d7efd16754ce824424088e5c77c4Fixed formatting from vera++. Also reformulated 2D+T case for convergence investigation.editsrc/pde/AnalyticFunction/ScalarFunction2D.cppedittest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cppeditsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion2D.cppeditsrc/pde/AnalyticFunction/ScalarFunction2D.heditsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion2D.htest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cpp46035cad3d3fb6bce1e81bcca95681e8e194e5b41541663578000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.eduswitched from pure adv to AD for hypersonic. 2018-11-08 02:52:58 -050046035cad3d3fb6bce1e81bcca95681e8e194e5b4switched from pure adv to AD for hypersonic.edittest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cppsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion2D.htest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cpp318b4d72e59bf63aca4a53904eaf38be646639861541710981000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.edu2D+T AD ST toy fix; need unit tests for BCAD2D.h 2018-11-08 16:03:01 -0500318b4d72e59bf63aca4a53904eaf38be646639862D+T AD ST toy fix; need unit tests for BCAD2D.heditsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion2D.hedittest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cppsrc/pde/IBL/BCIBL2D.hsrc/pde/IBL/BCIBLUniField.hsrc/pde/IBL/PDEIBL2D.hsrc/pde/IBL/PDEIBLUniField.h96ced65f79774ccc9388aeac794dc5d8da957bba1541726833000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed bugs in PDEIBLUniField 1. forgot 0.5 factor in source term of lag equation. 2. wrong sign in the amp source term equation for imposing initial condition on nt. 3. fixed upwinded flux of full upwinding 2018-11-08 20:27:13 -050096ced65f79774ccc9388aeac794dc5d8da957bbaFixed bugs in PDEIBLUniFieldeditsrc/pde/IBL/BCIBL2D.heditsrc/pde/IBL/BCIBLUniField.heditsrc/pde/IBL/PDEIBL2D.heditsrc/pde/IBL/PDEIBLUniField.htest/unit/Meshing/EGADS/EGObject_btest.cppCMakeInclude/Builds/BuildREFINE.cmakesrc/Meshing/EGTess/EGTessModel_aflr4.cppsrc/Meshing/gmsh/WriteMesh_gmsh.cppsrc/tools/SANSException.cppsrc/pde/FullPotential/BCLinearizedIncompressiblePotential3D.htest/unit/pde/FullPotential/BCLinearizedIncompressiblePotential3D_btest.cpptest/unit/Meshing/refine/refine3D_btest.cppsrc/Meshing/EGTess/EGTessModel.hsrc/UserInterfaces/LIPSolver.htest/unit/Meshing/AFLR/AFLR3_btest.cpptest/unit/Meshing/EGADS/EGTessellation_btest.cppsrc/UserInterfaces/capsAIM/sansLIPAIM.cpptest/unit/Python/Parameters_btest.cppsrc/Meshing/EPIC/WriteMeshMetric_Epic.cppsrc/Meshing/EGADS/EGObject.hscripts/jenkins/jenkins_env.shtest/sandbox/Solve3D_CG_NACA_LIP_Drela_toy.cpptest/unit/Meshing/EGTess/AFLR4_btest.cppsrc/Python/PyDict.cpptest/unit/Python/PyDict_btest.cpptest/unit/IO/NonLinearSolver/residual.dattest/unit/Meshing/EGADS/EGTessModel_btest.cppsrc/Meshing/EGTess/EGTessModel.cpptest/unit/Meshing/EGTess/EGTessModel_btest.cppsrc/Meshing/ugrid/XFieldVolume_ugrid.cppCMakeInclude/CompilerFlags.cmaketest/unit/Meshing/EGTess/CMakeLists.txtsrc/Meshing/libMeshb/libMeshb_Interface.hsrc/tools/BackTraceException.cpptest/sandbox/Solve3D_CG_NACA_FP_Drela_toy.cpptest/unit/tools/output_std_vector_btest.cppsrc/Python/Parameter.cppsrc/tools/SANSException.hsrc/Meshing/EGTess/EGTriangle.cppsrc/pde/FullPotential/BCLinearizedIncompressiblePotential3D.cppsrc/Meshing/EGTess/AFLR4.hCMakeInclude/Finds/FindAFLR.cmakeCMakeInclude/Checks/aflr_test.cxxsrc/UserInterfaces/LIPSolver.cpptest/unit/Meshing/EGADS/EGTessEdge_btest.cppsrc/tools/system_call.cpptest/unit/Meshing/EGTess/EGTessEdge_btest.cpptest/unit/Meshing/EGADS/CMakeLists.txtsrc/Meshing/EGADS/EGObject.cpptest/unit/IO/NonLinearSolver/linesearch_residuals.datsrc/Meshing/EPIC/XField_PX.cppsrc/tools/output_std_vector.hsrc/Meshing/EGTess/AFLR4.cppCMakeInclude/Checks/CheckAFLR.cmakesrc/Python/Parameter.hsrc/Meshing/EGTess/CMakeLists.txttest/unit/Meshing/TetGen/CMakeLists.txttest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cpptest/unit/Meshing/EGTess/EGTessellation_btest.cppsrc/UserInterfaces/capsAIM/intersectWake.cpptest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppe570c3724997970584c8bcff74dc02bf298d084f1541875585000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduLots of refactoring of AFLR4 and sansLIPAIM. All seems to be functioning. 2018-11-10 13:46:25 -0500e570c3724997970584c8bcff74dc02bf298d084fLots of refactoring of AFLR4 and sansLIPAIM. All seems to be functioning.editsrc/Meshing/EGADS/EGObject.cppeditsrc/UserInterfaces/capsAIM/intersectWake.cppdeletetest/unit/Meshing/EGADS/EGTessEdge_btest.cppeditCMakeInclude/Checks/aflr_test.cxxeditsrc/Meshing/EGTess/EGTessModel_aflr4.cppeditsrc/Meshing/EGTess/EGTessModel.heditsrc/tools/SANSException.cppedittest/unit/IO/NonLinearSolver/residual.dateditsrc/Meshing/EPIC/XField_PX.cppeditsrc/Meshing/EGADS/EGObject.heditsrc/tools/SANSException.hedittest/sandbox/Solve3D_CG_NACA_FP_Drela_toy.cppedittest/unit/Python/PyDict_btest.cppeditsrc/Meshing/EGTess/CMakeLists.txtedittest/unit/Meshing/EGTess/CMakeLists.txteditsrc/Meshing/EGTess/EGTriangle.cppeditsrc/Meshing/EPIC/WriteMeshMetric_Epic.cppeditsrc/pde/FullPotential/BCLinearizedIncompressiblePotential3D.hedittest/unit/Python/Parameters_btest.cppedittest/unit/Meshing/EGADS/EGObject_btest.cppeditsrc/Python/Parameter.heditsrc/pde/FullPotential/BCLinearizedIncompressiblePotential3D.cppedittest/unit/Meshing/refine/refine3D_btest.cppeditscripts/jenkins/jenkins_env.sheditCMakeInclude/Finds/FindAFLR.cmakeaddtest/unit/Meshing/EGTess/EGTessellation_btest.cppeditCMakeInclude/Builds/BuildREFINE.cmakeeditsrc/Meshing/gmsh/WriteMesh_gmsh.cppaddsrc/Meshing/EGTess/AFLR4.cppedittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppedittest/sandbox/Solve3D_CG_NACA_LIP_Drela_toy.cppeditsrc/UserInterfaces/LIPSolver.haddtest/unit/Meshing/EGTess/EGTessEdge_btest.cppeditsrc/Python/Parameter.cppeditsrc/Meshing/EGTess/EGTessModel.cppeditsrc/tools/BackTraceException.cppedittest/unit/Meshing/TetGen/CMakeLists.txtaddsrc/Meshing/EGTess/AFLR4.heditsrc/tools/output_std_vector.hedittest/unit/pde/FullPotential/BCLinearizedIncompressiblePotential3D_btest.cppeditsrc/Meshing/ugrid/XFieldVolume_ugrid.cppedittest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppeditCMakeInclude/Checks/CheckAFLR.cmakeedittest/unit/IO/NonLinearSolver/linesearch_residuals.dateditsrc/tools/system_call.cppedittest/unit/Meshing/EGADS/CMakeLists.txteditsrc/UserInterfaces/capsAIM/sansLIPAIM.cppedittest/unit/tools/output_std_vector_btest.cppeditsrc/Meshing/libMeshb/libMeshb_Interface.heditsrc/Python/PyDict.cppedittest/unit/Meshing/AFLR/AFLR3_btest.cppaddtest/unit/Meshing/EGTess/EGTessModel_btest.cppeditCMakeInclude/CompilerFlags.cmakeeditsrc/UserInterfaces/LIPSolver.cppdeletetest/unit/Meshing/EGADS/EGTessModel_btest.cppaddtest/unit/Meshing/EGTess/AFLR4_btest.cppdeletetest/unit/Meshing/EGADS/EGTessellation_btest.cppsrc/UserInterfaces/capsAIM/intersectWake.cpp5b8cf3090c4f8cb9603fd2d967c99306649ff6391541876504000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMinor fix 2018-11-10 14:01:44 -05005b8cf3090c4f8cb9603fd2d967c99306649ff639Minor fixeditsrc/UserInterfaces/capsAIM/intersectWake.cppCMakeInclude/Finds/FindAFLR.cmake6aeb0f1f784ea7933e2278caf13653a94ff791341541877404000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduTweak to how AFLR is found 2018-11-10 14:16:44 -05006aeb0f1f784ea7933e2278caf13653a94ff79134Tweak to how AFLR is foundeditCMakeInclude/Finds/FindAFLR.cmakesrc/UserInterfaces/PythonUI/PySANS_LIP.cpp9af22b9af1f0180ec75690487acc3236f59b24f01541884703000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed compile error 2018-11-10 16:18:23 -05009af22b9af1f0180ec75690487acc3236f59b24f0Fixed compile erroreditsrc/UserInterfaces/PythonUI/PySANS_LIP.cppscripts/jenkins/jenkins_env.shCMakeInclude/Dependencies.cmake4899334c15b3c84cfb2a0b08887df1a797599ab71541888802000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdate minimum boost version to 1.50 due to bug in property_tree json reader. 2018-11-10 17:26:42 -05004899334c15b3c84cfb2a0b08887df1a797599ab7Update minimum boost version to 1.50 due to bug in property_tree json reader.editCMakeInclude/Dependencies.cmakeeditscripts/jenkins/jenkins_env.shtest/unit/Meshing/EGTess/EGTessModel_btest.cpptest/unit/Meshing/EGTess/AFLR4_btest.cpp38e54796c19f9db07e363fc6fdcdd5fe48ad506a1541897291000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMerged AFLR4 test into EGTessModel 2018-11-10 19:48:11 -050038e54796c19f9db07e363fc6fdcdd5fe48ad506aMerged AFLR4 test into EGTessModeledittest/unit/Meshing/EGTess/EGTessModel_btest.cppdeletetest/unit/Meshing/EGTess/AFLR4_btest.cppsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion2D.hfa11b06e327f85749c4ca992cadea9bcba3257d81541978177000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.eduFixed flux feedthrough for 2D+T AD. 2018-11-11 18:16:17 -0500fa11b06e327f85749c4ca992cadea9bcba3257d8Fixed flux feedthrough for 2D+T AD.editsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion2D.htest/sandbox/Adapt3D_L2Project_MOESS_toy.cppsrc/UserInterfaces/capsAIM/sansLIPAIM.cpp3812519487936a5bcc7e4e36790da3a301fc5f9e1541997673000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMore extensive try with sansLIPAIM 2018-11-11 23:41:13 -05003812519487936a5bcc7e4e36790da3a301fc5f9eMore extensive try with sansLIPAIMeditsrc/UserInterfaces/capsAIM/sansLIPAIM.cppedittest/sandbox/Adapt3D_L2Project_MOESS_toy.cppsrc/UserInterfaces/capsAIM/sansLIPAIM.cppsrc/UserInterfaces/LIPSolver.cppca410500af3a21a0b51acc57102b5180a7da394f1542039280000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMost sansLIP updates 2018-11-12 11:14:40 -0500ca410500af3a21a0b51acc57102b5180a7da394fMost sansLIP updateseditsrc/UserInterfaces/LIPSolver.cppeditsrc/UserInterfaces/capsAIM/sansLIPAIM.cppsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_backsolve.hsrc/Meshing/AFLR/AFLR3.cppsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_factorize.hsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver.hsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_CRS_MatrixD.cppsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_impl.hsrc/UserInterfaces/LIPSolver.cppsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_CRS_double.cppf7ad469db71e25931a95b61c5eb47714b46587fb1542045524000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix MKL_PARDISO for transpose solves. Bug fix for AFLR3 2018-11-12 12:58:44 -0500f7ad469db71e25931a95b61c5eb47714b46587fbFix MKL_PARDISO for transpose solves. Bug fix for AFLR3editsrc/UserInterfaces/LIPSolver.cppeditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_CRS_double.cppeditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_impl.heditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_CRS_MatrixD.cppeditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_factorize.heditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver.heditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_backsolve.heditsrc/Meshing/AFLR/AFLR3.cppCMakeInclude/Finds/FindMKL.cmakecd45f09e4278d52817762bcc8e4ee95331f66fe81542053699000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUse static MKL libraries due to python issues 2018-11-12 15:14:59 -0500cd45f09e4278d52817762bcc8e4ee95331f66fe8Use static MKL libraries due to python issueseditCMakeInclude/Finds/FindMKL.cmakeCMakeInclude/Finds/FindMKL.cmake5296add3174f262c60555c86ccc1704b2eaa54ca1542053903000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduDon't statically link in the ld library 2018-11-12 15:18:23 -05005296add3174f262c60555c86ccc1704b2eaa54caDon't statically link in the ld libraryeditCMakeInclude/Finds/FindMKL.cmaketest/unit/Discretization/HDG/CMakeLists.txt80a1a669a4d1e399370075c2d2a6cb89767ba8ee1542054924000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduIncreased timout time for HDG test 2018-11-12 15:35:24 -050080a1a669a4d1e399370075c2d2a6cb89767ba8eeIncreased timout time for HDG testedittest/unit/Discretization/HDG/CMakeLists.txttest/unit/Discretization/HDG/CMakeLists.txtbfc7e99660957219fd12d9dcccdd507695af146f1542075308000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduRealzed timing on another test 2018-11-12 21:15:08 -0500bfc7e99660957219fd12d9dcccdd507695af146fRealzed timing on another testedittest/unit/Discretization/HDG/CMakeLists.txtsrc/Field/Element/GalerkinWeightedIntegral_New.hsrc/pde/IBL/PDEIBLUniField.h43723df71e5a2812070bf0d72503e767e612331c1542212837000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactored UniField IBL and ran it for forced and free transition problems 2018-11-14 11:27:17 -050043723df71e5a2812070bf0d72503e767e612331cRefactored UniField IBL and ran it for forced and free transition problemseditsrc/pde/IBL/PDEIBLUniField.heditsrc/Field/Element/GalerkinWeightedIntegral_New.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpp2fab23a06df0f661bf373cf77d24a9620f7e011f1542215156000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduPlayed captured transition (forced and free) 2018-11-14 12:05:56 -05002fab23a06df0f661bf373cf77d24a9620f7e011fPlayed captured transition (forced and free)edittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne1024_a0_unifield.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne360_a0_unifield.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne96_a0_unifield.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne256_a0_unifield.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne800_a0_unifield.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne192_a0_unifield.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne2048_a0_unifield.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne512_a0_unifield.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne640_a0_unifield.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne128_a0_unifield.txt724b4807b0300822cc812ce15480017dd95b24841542215212000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduUpdated initial solution guesses for reformulated captured transition IBL 2018-11-14 12:06:52 -0500724b4807b0300822cc812ce15480017dd95b2484Updated initial solution guesses for reformulated captured transition IBLedittest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne192_a0_unifield.txtedittest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne2048_a0_unifield.txtedittest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne256_a0_unifield.txtedittest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne512_a0_unifield.txtedittest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne128_a0_unifield.txtedittest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne800_a0_unifield.txtedittest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne96_a0_unifield.txtedittest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne360_a0_unifield.txtedittest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne640_a0_unifield.txtedittest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne1024_a0_unifield.txttest/system/IO/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_naca0004_ne64_p1_airfoil_Test_invCFL0p1.txttest/system/IO/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_naca0004_ne64_p1_airfoil_Test.txtsrc/pde/IBL/PDEIBL2D.hsrc/pde/IBL/PDEIBL2D_impl.htest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_NACA0004_LamiBL_PTC_btest.cpptest/system/IO/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_naca0004_ne64_p1_airfoil_Test_HDGcontinuous.txttest/system/IO/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_naca0004_ne64_p1_airfoil_Test_continuous.txttest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_NACA0004_LamiBL_btest.cpptest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBLUniField_NACA0004_LamiBL_btest.cpptest/system/IO/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_naca0004_ne64_p1_airfoil_Test_LFflux.txttest/system/IO/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_naca0004_ne64_p1_airfoil_Test_invCFL0p001.txtsrc/pde/IBL/PDEIBLUniField.htest/system/IO/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_naca0004_ne64_p1_airfoil_Test_DGvsHDG.txttest/system/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_NACA0004_LamiBL_btest.cpptest/system/IO/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_naca0004_ne64_p1_airfoil_Test_FullUpwind.txt008dab1f9b6b6fd9e241bd085a5bd8e627f793651542227604000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduUnified system test on the case of uncoupled IBL laminar BL on airfoil 2018-11-14 15:33:24 -0500008dab1f9b6b6fd9e241bd085a5bd8e627f79365Unified system test on the case of uncoupled IBL laminar BL on airfoileditsrc/pde/IBL/PDEIBLUniField.hdeletetest/system/IO/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_naca0004_ne64_p1_airfoil_Test_invCFL0p001.txtedittest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_NACA0004_LamiBL_PTC_btest.cppdeletetest/system/IO/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_naca0004_ne64_p1_airfoil_Test_DGvsHDG.txtedittest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBLUniField_NACA0004_LamiBL_btest.cppedittest/system/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_NACA0004_LamiBL_btest.cppdeletetest/system/IO/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_naca0004_ne64_p1_airfoil_Test_HDGcontinuous.txtaddtest/system/IO/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_naca0004_ne64_p1_airfoil_Test_continuous.txteditsrc/pde/IBL/PDEIBL2D.hedittest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_NACA0004_LamiBL_btest.cppaddtest/system/IO/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_naca0004_ne64_p1_airfoil_Test_FullUpwind.txtaddtest/system/IO/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_naca0004_ne64_p1_airfoil_Test_LFflux.txtdeletetest/system/IO/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_naca0004_ne64_p1_airfoil_Test.txteditsrc/pde/IBL/PDEIBL2D_impl.hdeletetest/system/IO/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_naca0004_ne64_p1_airfoil_Test_invCFL0p1.txttest/system/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_NACA0004_LamiBL_btest.cpptest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBLUniField_NACA0004_LamiBL_btest.cppsrc/pde/IBL/PDEIBL2D.hsrc/pde/IBL/PDEIBLUniField.htest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_NACA0004_LamiBL_PTC_btest.cpptest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_NACA0004_LamiBL_btest.cppbe445d3bfd17e3ee507df53e714cfe86848694421542248984000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactored IBL numerical fluxes 2018-11-14 21:29:44 -0500be445d3bfd17e3ee507df53e714cfe8684869442Refactored IBL numerical fluxesedittest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_NACA0004_LamiBL_PTC_btest.cppedittest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBLUniField_NACA0004_LamiBL_btest.cppeditsrc/pde/IBL/PDEIBLUniField.hedittest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_NACA0004_LamiBL_btest.cppeditsrc/pde/IBL/PDEIBL2D.hedittest/system/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_NACA0004_LamiBL_btest.cpptest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_refactoring_Test.txtsrc/pde/IBL/PDEIBL2D.htest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DGAdv_IBLUniField_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test_FullUpwind.txttest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test.txttest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DGAdv_IBLUniField_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test_LFflux.txttest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_HDGAdv_IBL_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test_continuous.txttest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DGAdv_IBL_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test_FullUpwind.txttest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test.txtsrc/pde/IBL/PDEIBLUniField.htest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBL_turbulentWakeibl3eqm_naca0004_ne64_p1_Test.txttest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DGAdv_IBL_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test_LFflux.txttest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeIBL3eqmClosure_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_LamiBL_TurbWake_btest.cpp3856be0f6e1c64ba7d30296d6317870bbb51b28c1542251895000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduUpdated pyrite files for coupled coupled IBL cases with laminarBL+turbulentWake 2018-11-14 22:18:15 -05003856be0f6e1c64ba7d30296d6317870bbb51b28cUpdated pyrite files for coupled coupled IBL cases with laminarBL+turbulentWakeeditsrc/pde/IBL/PDEIBL2D.haddtest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DGAdv_IBLUniField_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test_LFflux.txtdeletetest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_refactoring_Test.txtedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cppaddtest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DGAdv_IBL_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test_FullUpwind.txtedittest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_LamiBL_TurbWake_btest.cppeditsrc/pde/IBL/PDEIBLUniField.hedittest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBL_turbulentWakeibl3eqm_naca0004_ne64_p1_Test.txtaddtest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DGAdv_IBL_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test_LFflux.txtaddtest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_HDGAdv_IBL_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test_continuous.txtdeletetest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test.txtedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cppaddtest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DGAdv_IBLUniField_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test_FullUpwind.txtedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeIBL3eqmClosure_btest.cppdeletetest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test.txttest/sandbox/Solve3D_DGBR2_AD_ST_toy.cpptest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cppdcfc7eeedb058f448a4946eddf0e9462015b7ffa1542257368000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.eduMoved 2D+T convergence to Solve3D, made Adapt3D version adapt. 2018-11-14 23:49:28 -0500dcfc7eeedb058f448a4946eddf0e9462015b7ffaMoved 2D+T convergence to Solve3D, made Adapt3D version adapt.edittest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cppaddtest/sandbox/Solve3D_DGBR2_AD_ST_toy.cpptest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cpp19bf402ac407493c686c0af0c26eb14950f01b541542258934000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.eduTypo fix. 2018-11-15 00:15:34 -050019bf402ac407493c686c0af0c26eb14950f01b54Typo fix.edittest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_CapturedTransition_btest.cpptest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_forcedTransition0p8244925_naca0004_ne64_p1_Test_CapturedTransition_FullUpwind.txtsrc/pde/IBL/ElementProjectionIBLoutput_L2.htest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_forcedTransition0p8244925_naca0004_ne64_p1_Test_CapturedTransition_LFflux.txttest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBL_turbulentWakeibl3eqm_naca0004_ne64_p1_Test.txttest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeIBL3eqmClosure_btest.cppbe98c2f1a424a5c34d495416a2f9f3b048f81d811542300488000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRan and added pyrite files for captured forced transition without using cut-cell machinery 2018-11-15 11:48:08 -0500be98c2f1a424a5c34d495416a2f9f3b048f81d81Ran and added pyrite files for captured forced transition without using cut-cell machineryeditsrc/pde/IBL/ElementProjectionIBLoutput_L2.hedittest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBL_turbulentWakeibl3eqm_naca0004_ne64_p1_Test.txtaddtest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_forcedTransition0p8244925_naca0004_ne64_p1_Test_CapturedTransition_LFflux.txtaddtest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_CapturedTransition_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppaddtest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_forcedTransition0p8244925_naca0004_ne64_p1_Test_CapturedTransition_FullUpwind.txtedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeIBL3eqmClosure_btest.cppsrc/Adaptation/MOESS/NodalMetrics.cppsrc/Adaptation/TargetMetric.hsrc/Adaptation/TargetMetric.cppsrc/Adaptation/MeshAdapter.cppsrc/Meshing/avro/MesherInterface_avro.cpptest/sandbox/Adapt3D_Mesh_Optimizer_toy.cpptest/sandbox/Adapt4D_Mesh_Optimizer_toy.cppsrc/Meshing/avro/MesherInterface_avro.hbcf7877c2dcdc515f61783a905e7181af5f172521542301240000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edupush to hypersonic 2018-11-15 12:00:40 -0500bcf7877c2dcdc515f61783a905e7181af5f17252push to hypersoniceditsrc/Adaptation/TargetMetric.cppedittest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppeditsrc/Adaptation/MOESS/NodalMetrics.cppedittest/sandbox/Adapt4D_Mesh_Optimizer_toy.cppeditsrc/Adaptation/MeshAdapter.cppeditsrc/Adaptation/TargetMetric.heditsrc/Meshing/avro/MesherInterface_avro.cppeditsrc/Meshing/avro/MesherInterface_avro.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppffe8936431a043f33f75cdd209cdd4b74565a5761542312431000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduVerified reasonable agreement between natural transition solution of UniField IBL using cut-cell against that using plain DG without cut-cell 2018-11-15 15:07:11 -0500ffe8936431a043f33f75cdd209cdd4b74565a576Verified reasonable agreement between natural transition solution of UniField IBL using cut-cell against that using plain DG without cut-celledittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/sandbox/Solve3D_DGBR2_AD_ST_toy.cpptest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cpp7d4ec6c8e8fc82518aca97287529fedcc7fa5d3b1542326555000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.eduAdded recent-5 to Adapt3D 2D+T AD 2018-11-15 19:02:35 -05007d4ec6c8e8fc82518aca97287529fedcc7fa5d3bAdded recent-5 to Adapt3D 2D+T ADedittest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cppedittest/sandbox/Solve3D_DGBR2_AD_ST_toy.cppsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_MatrixBlock_4x4_Instantiate.cpp56a0f5ffd15c0b7c18fa85ec9301aca3f6aa00371542336299000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded MKL instantiation 2018-11-15 21:44:59 -050056a0f5ffd15c0b7c18fa85ec9301aca3f6aa0037Added MKL instantiationeditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_MatrixBlock_4x4_Instantiate.cppCMakeInclude/Finds/FindMKL.cmakesrc/UserInterfaces/capsAIM/sansLIPAIM.cppsrc/UserInterfaces/capsAIM/CMakeLists.txtb78aa3fda32a0d9566ee487d160013edce7977311542475632000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduSeparate list of MKL static libraries 2018-11-17 12:27:12 -0500b78aa3fda32a0d9566ee487d160013edce797731Separate list of MKL static librarieseditsrc/UserInterfaces/capsAIM/CMakeLists.txteditCMakeInclude/Finds/FindMKL.cmakeeditsrc/UserInterfaces/capsAIM/sansLIPAIM.cppPreLoad.cmakeCMakeInclude/Finds/FindMKL.cmakesrc/UserInterfaces/capsAIM/CMakeLists.txta1036d4261be708b68a96b91a6424aa74125d1941542479259000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAlways link in MKL statically with sansLIPAIM 2018-11-17 13:27:39 -0500a1036d4261be708b68a96b91a6424aa74125d194Always link in MKL statically with sansLIPAIMeditPreLoad.cmakeeditCMakeInclude/Finds/FindMKL.cmakeeditsrc/UserInterfaces/capsAIM/CMakeLists.txtsrc/UserInterfaces/capsAIM/sansLIPAIM.cpp13ff56d763c0fd8afc30fcd0181206ff46b509ba1542486298000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMoved error message for sansLIP 2018-11-17 15:24:58 -050013ff56d763c0fd8afc30fcd0181206ff46b509baMoved error message for sansLIPeditsrc/UserInterfaces/capsAIM/sansLIPAIM.cpptest/sandbox/Solve1D_CG_AD_RK_toy.cpptest/sandbox/Solve2D_CGStabilized_Triangle_RANSSA_Joukowski_toy.cpptest/sandbox/Solve2D_DGBR2_Euler_ForwardStep_AV_ST_toy.cpptest/system/LocalSolve/EdgeLocalSolve3D_Dual_Galerkin_Stabilized_AD_btest.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_Euler_CubicSource_toy.cpptest/unit/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_Triangle_Euler_btest.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cpptest/sandbox/Solve1D_DGBR2_Line_Euler_ArtNozzle_AV_ST_toy.cpptest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_Joukowski_toy.cpptest/sandbox/Solve2D_CG_Triangle_Poisson_toy.cpptest/sandbox/Solve3D_CG_xNonLinPoisson_toy.cpptest/sandbox/Adjoint1D_DGAdvective_AD_ST_toy.cpptest/sandbox/Solve1D_DGBR2_Line_Euler_ArtNozzle_AV_Steady_toy.cpptest/sandbox/Adapt1D_DGBR2_Line_Euler_SSMENozzle_toy.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AR_btest.cpptest/sandbox/Adapt3D_CG_AD_L2_MOESS_toy.cpptest/sandbox/Solve2D_CGStabilized_Triangle_Euler_GaussianBump_toy.cpptest/sandbox/Solve1D_DGBR2_Line_Euler_Sod_AV_ST_toy.cpptest/sandbox/Solve1D_DGBR2_Line_Euler_Nozzle_ArtificialViscosity_toy.cpptest/sandbox/Adapt3D_CG_AD_L2_MultiScale_toy.cpptest/sandbox/Adapt2D_DGAdvective_Euler_CubicSource_toy.cpptest/sandbox/Adapt3D_L2Project_MOESS_toy.cpptest/system/LocalSolve/EdgeLocalSolve2D_Primal_Galerkin_Stabilized_Triangle_AD_btest.cpptest/system/LocalSolve/EdgeLocalSolve1D_Dual_Galerkin_Stabilized_Line_AD_btest.cpptest/sandbox/Adapt3D_DG_AD_L2_MOESS_toy.cpptest/sandbox/Solve2D_CG_Triangle_LIP_CubicSource_toy.cppsrc/Adaptation/MOESS/SolverInterface_L2Project.htest/unit/Discretization/Galerkin/FunctionalCell_Galerkin_btest.cpptest/sandbox/Solve1D_DGBR2_Line_Euler_ShuOsher_AV_ST_toy.cpptest/system/LocalSolve/ElementLocalSolve3D_DGAdvective_Tet_AD_btest.cpptest/sandbox/Solve2D_DGAdvective_Triangle_Euler_GaussianBump_toy.cppsrc/Discretization/Galerkin/FunctionalCell_Galerkin.htest/system/LocalSolve/ElementDualLocalSolve3D_Galerkin_Stabilized_Triangle_AD_btest.cpptest/sandbox/Solve2D_CG_NACA_IPTF_linearsolve_toy.cppsrc/Adaptation/MOESS/SolverInterface_DGAdvective.htest/sandbox/Solve1D_DGBR2_Line_Euler_Lax_AV_ST_toy.cpptest/system/Asymptotic/Adjoint2D_DGAdvective_Triangle_AD_btest.cppsrc/Adaptation/MOESS/SolverInterface_Galerkin.htest/sandbox/Solve2D_DGBR2_Triangle_Poisson_toy.cpptest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cpptest/unit/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_Triangle_AD_btest.cpptest/sandbox/Solve3D_DGAdvective_Euler_Suboff_toy.cpptest/sandbox/Solve3D_CG_xtNonLinPoisson_RK_toy.cpptest/sandbox/Solve2D_DGAdvective_AD_RK_toy.cpptest/sandbox/Adjoint1D_DGAdvective_BuckleyLeverett_ST_toy.cpptest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cpp3258448aa8fa0874630ac8edfce5380e237a46481542598875000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduBuilding mpi all_reduce into FunctionalCell_Galerkin 2018-11-18 22:41:15 -05003258448aa8fa0874630ac8edfce5380e237a4648Building mpi all_reduce into FunctionalCell_Galerkinedittest/unit/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_Triangle_AD_btest.cppeditsrc/Discretization/Galerkin/FunctionalCell_Galerkin.heditsrc/Adaptation/MOESS/SolverInterface_L2Project.hedittest/sandbox/Adjoint1D_DGAdvective_AD_ST_toy.cppedittest/sandbox/Solve2D_CG_NACA_IPTF_linearsolve_toy.cppedittest/sandbox/Solve2D_DGBR2_Triangle_Poisson_toy.cppedittest/sandbox/Solve3D_CG_xtNonLinPoisson_RK_toy.cppedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AR_btest.cppedittest/sandbox/Adapt3D_CG_AD_L2_MOESS_toy.cppedittest/sandbox/Solve1D_DGBR2_Line_Euler_Nozzle_ArtificialViscosity_toy.cppeditsrc/Adaptation/MOESS/SolverInterface_DGAdvective.hedittest/sandbox/Solve3D_DGAdvective_Euler_Suboff_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_Euler_CubicSource_toy.cppedittest/sandbox/Adapt3D_L2Project_MOESS_toy.cppedittest/sandbox/Solve1D_CG_AD_RK_toy.cppedittest/sandbox/Solve2D_DGBR2_Euler_ForwardStep_AV_ST_toy.cppedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cppedittest/sandbox/Solve2D_CG_Triangle_Poisson_toy.cppedittest/system/Asymptotic/Adjoint2D_DGAdvective_Triangle_AD_btest.cppedittest/system/LocalSolve/EdgeLocalSolve2D_Primal_Galerkin_Stabilized_Triangle_AD_btest.cppedittest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cppedittest/sandbox/Solve2D_CG_Triangle_LIP_CubicSource_toy.cppedittest/system/LocalSolve/EdgeLocalSolve1D_Dual_Galerkin_Stabilized_Line_AD_btest.cppedittest/sandbox/Solve1D_DGBR2_Line_Euler_ArtNozzle_AV_ST_toy.cppedittest/system/LocalSolve/EdgeLocalSolve3D_Dual_Galerkin_Stabilized_AD_btest.cppedittest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_Joukowski_toy.cppedittest/sandbox/Solve3D_CG_xNonLinPoisson_toy.cppedittest/sandbox/Adapt3D_CG_AD_L2_MultiScale_toy.cppedittest/sandbox/Solve1D_DGBR2_Line_Euler_ArtNozzle_AV_Steady_toy.cppedittest/sandbox/Adapt2D_DGAdvective_Euler_CubicSource_toy.cppedittest/sandbox/Adjoint1D_DGAdvective_BuckleyLeverett_ST_toy.cppedittest/sandbox/Solve2D_CGStabilized_Triangle_Euler_GaussianBump_toy.cppedittest/system/LocalSolve/ElementDualLocalSolve3D_Galerkin_Stabilized_Triangle_AD_btest.cppedittest/system/LocalSolve/ElementLocalSolve3D_DGAdvective_Tet_AD_btest.cppedittest/sandbox/Solve2D_DGAdvective_AD_RK_toy.cppedittest/unit/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_Triangle_Euler_btest.cppedittest/sandbox/Solve2D_DGAdvective_Triangle_Euler_GaussianBump_toy.cppedittest/sandbox/Adapt1D_DGBR2_Line_Euler_SSMENozzle_toy.cppeditsrc/Adaptation/MOESS/SolverInterface_Galerkin.hedittest/unit/Discretization/Galerkin/FunctionalCell_Galerkin_btest.cppedittest/sandbox/Solve1D_DGBR2_Line_Euler_Lax_AV_ST_toy.cppedittest/sandbox/Solve2D_CGStabilized_Triangle_RANSSA_Joukowski_toy.cppedittest/sandbox/Solve1D_DGBR2_Line_Euler_ShuOsher_AV_ST_toy.cppedittest/sandbox/Solve1D_DGBR2_Line_Euler_Sod_AV_ST_toy.cppedittest/sandbox/Adapt3D_DG_AD_L2_MOESS_toy.cppedittest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cpptest/sandbox/Optimize_Blade_HSM2D_toy.cpptest/sandbox/Solve2D_CGStabilized_Triangle_Euler_GaussianBump_toy.cpp01fa554c1f8a979515b1e0664efef84614902d8e1542601795000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded missing includes 2018-11-18 23:29:55 -050001fa554c1f8a979515b1e0664efef84614902d8eAdded missing includesedittest/sandbox/Optimize_Blade_HSM2D_toy.cppedittest/sandbox/Solve2D_CGStabilized_Triangle_Euler_GaussianBump_toy.cpptest/system/CodeConsistency/Solve2D_XfoilLikePanelMethod_btest.cppe9af8057ee4b835001ea5a4efb80cb575be215fe1542734734000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduMinor edits 2018-11-20 12:25:34 -0500e9af8057ee4b835001ea5a4efb80cb575be215feMinor editsedittest/system/CodeConsistency/Solve2D_XfoilLikePanelMethod_btest.cppsrc/pde/IBL/PDEIBL2D_impl.hsrc/pde/IBL/PDEIBLUniField.hsrc/pde/IBL/PDEIBL2D.h3e30c115b24a6d1d853d848a52d0ffd455c922b11542813322000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduChanged default numerical flux 2018-11-21 10:15:22 -05003e30c115b24a6d1d853d848a52d0ffd455c922b1Changed default numerical fluxeditsrc/pde/IBL/PDEIBL2D_impl.heditsrc/pde/IBL/PDEIBLUniField.heditsrc/pde/IBL/PDEIBL2D.hsrc/pde/IBL/PDEIBL2D.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_forcedTransition0p8074822_naca0004_ne64_p1_Test_FittedTransition_FullUpwind.txttest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_forcedTransition0p8074822_naca0004_ne64_p1_Test_FittedTransition_LFflux.txtbee283002ff8a61806269e2ff96bc693e08c6d3a1542814518000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded pyrite files for fitted transition of forced cases 2018-11-21 10:35:18 -0500bee283002ff8a61806269e2ff96bc693e08c6d3aAdded pyrite files for fitted transition of forced casesedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppaddtest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_forcedTransition0p8074822_naca0004_ne64_p1_Test_FittedTransition_FullUpwind.txteditsrc/pde/IBL/PDEIBL2D.haddtest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_forcedTransition0p8074822_naca0004_ne64_p1_Test_FittedTransition_LFflux.txttest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_iter_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpp0da0143f870762740461099f2a116db9111e602e1542815702000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRemoved redundant cases 2018-11-21 10:55:02 -05000da0143f870762740461099f2a116db9111e602eRemoved redundant casesdeletetest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_iter_TurbWake_btest.cppdeletetest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne64_a0_unifield.txttest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_CapturedTransition_btest.cppsrc/pde/IBL/PDEIBL2D.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_NewtonUR_TurbWake_btest.cpp47f45c7f68be47dbe9b4dc6800325961ba99f0081542819120000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduMinor updates 2018-11-21 11:52:00 -050047f45c7f68be47dbe9b4dc6800325961ba99f008Minor updateseditsrc/pde/IBL/PDEIBL2D.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_CapturedTransition_btest.cppedittest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne64_a0_unifield.txtedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_NewtonUR_TurbWake_btest.cppsrc/pde/IBL/BCIBLUniField.hsrc/pde/IBL/PDEIBLUniField.h0b46e6929f4e6c41949bd8d67a31fd7c65a3a4a41542820159000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded an alternative turbulent onset ctau value 2018-11-21 12:09:19 -05000b46e6929f4e6c41949bd8d67a31fd7c65a3a4a4Added an alternative turbulent onset ctau valueeditsrc/pde/IBL/BCIBLUniField.heditsrc/pde/IBL/PDEIBLUniField.hsrc/pde/IBL/SetSolnDofCell_IBL2D.hsrc/pde/IBL/BCIBL2D.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_CapturedTransition_btest.cppsrc/pde/IBL/PDEIBL2D.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_NewtonUR_TurbWake_btest.cpp37830e65081037c908fe24666d095f86b764da711542850164000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduUpdates before running grid convergence on fitted transition 2018-11-21 20:29:24 -050037830e65081037c908fe24666d095f86b764da71Updates before running grid convergence on fitted transitionedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppeditsrc/pde/IBL/SetSolnDofCell_IBL2D.heditsrc/pde/IBL/BCIBL2D.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_NewtonUR_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_CapturedTransition_btest.cppeditsrc/pde/IBL/PDEIBL2D.hsrc/pde/IBL/PDEIBLUniField.hsrc/pde/IBL/BCIBLUniField.hsrc/pde/IBL/PDEIBL2D.hb30121ee5531d91e84aac94fbdab6462f458f4f81542896961000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edufixed a bug in PDEIBL source. other minor fixes 2018-11-22 09:29:21 -0500b30121ee5531d91e84aac94fbdab6462f458f4f8fixed a bug in PDEIBL source. other minor fixeseditsrc/pde/IBL/PDEIBL2D.heditsrc/pde/IBL/PDEIBLUniField.heditsrc/pde/IBL/BCIBLUniField.htest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DGAdv_IBL_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test_FullUpwind.txtsrc/pde/IBL/PDEIBL2D.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cppsrc/pde/IBL/PDEIBLUniField.htest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DGAdv_IBL_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test_LFflux.txta00d5001dce5d4c28164ada257f05b79dd62ab111542899012000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduUpdated pyrtied files to fix the bug in PDEIBL lag source term introduced on 2018/11/02 in commit 9625612 2018-11-22 10:03:32 -0500a00d5001dce5d4c28164ada257f05b79dd62ab11Updated pyrtied files to fix the bug in PDEIBL lag source term introduced on 2018/11/02 in commit 9625612editsrc/pde/IBL/PDEIBLUniField.hedittest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DGAdv_IBL_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test_LFflux.txtedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cppeditsrc/pde/IBL/PDEIBL2D.hedittest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DGAdv_IBL_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test_FullUpwind.txtsrc/pde/IBL/PDEIBL2D_impl.h36f5d14be54a63906cfd23c92ebdb27bea22c57b1542899299000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduTweaked a default setting for system test pyrite checks 2018-11-22 10:08:19 -050036f5d14be54a63906cfd23c92ebdb27bea22c57bTweaked a default setting for system test pyrite checkseditsrc/pde/IBL/PDEIBL2D_impl.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeIBL3eqmClosure_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_p0_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_p0_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpp810cae796048f9143b9aa9c70682c74ed4f2aad71542900179000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduCleaned up system tests 2018-11-22 10:22:59 -0500810cae796048f9143b9aa9c70682c74ed4f2aad7Cleaned up system testsdeletetest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeIBL3eqmClosure_btest.cppdeletetest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_p0_btest.cppdeletetest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppdeletetest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_p0_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_CapturedTransition_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_NewtonUR_TurbWake_btest.cpp567074a6187352adfc7483e669ea7b1d418d20d61542905564000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed free-forced nested solver logic for transition at element interface 2018-11-22 11:52:44 -0500567074a6187352adfc7483e669ea7b1d418d20d6Fixed free-forced nested solver logic for transition at element interfaceedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_NewtonUR_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_CapturedTransition_btest.cpptest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBLforcedTransition0p8074822_turbulentWakexfoillag_naca0004_ne64_p1_Test_ExplicitMassCons.txttest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_HDGAdv_IBL_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test.txtsrc/pde/IBL/PDEIBL2D_impl.htest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DG_IBL_Panel_naturalTransition_ntcrit0p6000_naca0004_ne64_p1_Test_FittedTransition_FullUpwind.txttest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBLnaturalTransition_ntcrit0p6500_turbulentWakexfoillag_naca0004_ne64_p1_Test_DGmatchHDG.txttest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBLnaturalTransition_ntcrit0p6500_turbulentWakexfoillag_naca0004_ne64_p1_Test_HDGcontinuous.txttest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_NewtonUR_TurbWake_btest.cpptest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DG_IBL_Panel_naturalTransition_ntcrit0p6000_naca0004_ne64_p1_Test_FittedTransition_LFflux.txttest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_HDGAdv_IBL_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test_continuous.txttest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBLnaturalTransition_ntcrit0p520_turbulentWakexfoillag_naca0004_ne64_p1_Test_ExplicitMassCons.txttest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_laminarBLforcedTransition0p8244925_turbulentWakexfoillag_naca0004_ne64_p1_Test_ExplicitMassCons.txttest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBL_turbulentWakeibl3eqm_naca0004_ne64_p1_Test.txttest/system/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_NACA0004_LamiBL_btest.cpptest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBLforcedTransition0p80408_turbulentWakexfoillag_naca0004_ne64_p1_Test_ExplicitMassCons.txttest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_LamiBL_TurbWake_btest.cpp50593b25cec776fd9c390976641d11a0300ea4e91542934395000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduUpdated and cleaned up pyrite files 2018-11-22 19:53:15 -050050593b25cec776fd9c390976641d11a0300ea4e9Updated and cleaned up pyrite filesdeletetest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBLnaturalTransition_ntcrit0p6500_turbulentWakexfoillag_naca0004_ne64_p1_Test_HDGcontinuous.txteditsrc/pde/IBL/PDEIBL2D_impl.haddtest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DG_IBL_Panel_naturalTransition_ntcrit0p6000_naca0004_ne64_p1_Test_FittedTransition_LFflux.txtdeletetest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBLnaturalTransition_ntcrit0p6500_turbulentWakexfoillag_naca0004_ne64_p1_Test_DGmatchHDG.txtedittest/system/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_NACA0004_LamiBL_btest.cppdeletetest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_laminarBLforcedTransition0p8244925_turbulentWakexfoillag_naca0004_ne64_p1_Test_ExplicitMassCons.txtdeletetest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBLforcedTransition0p8074822_turbulentWakexfoillag_naca0004_ne64_p1_Test_ExplicitMassCons.txtdeletetest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_HDGAdv_IBL_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test.txtdeletetest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBLforcedTransition0p80408_turbulentWakexfoillag_naca0004_ne64_p1_Test_ExplicitMassCons.txtedittest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_LamiBL_TurbWake_btest.cppdeletetest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBLnaturalTransition_ntcrit0p520_turbulentWakexfoillag_naca0004_ne64_p1_Test_ExplicitMassCons.txtedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_NewtonUR_TurbWake_btest.cppaddtest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DG_IBL_Panel_naturalTransition_ntcrit0p6000_naca0004_ne64_p1_Test_FittedTransition_FullUpwind.txtedittest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_HDGAdv_IBL_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test_continuous.txtdeletetest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBL_turbulentWakeibl3eqm_naca0004_ne64_p1_Test.txtedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne64_a0_transition.txtacd4d9989454d348eb661eaa986dc3bdea9cfad21542934425000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduUpdated an initial solution file for flow transition system tests 2018-11-22 19:53:45 -0500acd4d9989454d348eb661eaa986dc3bdea9cfad2Updated an initial solution file for flow transition system testsedittest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne64_a0_transition.txttest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_TwoLayerNewton_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_LineSearchNewton_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_Forced_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_NewtonUR_TurbWake_btest.cppe945d3b4f5be7e6d9fb1c5a39150ece7de7ee1c31542941007000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRenaming 2018-11-22 21:43:27 -0500e945d3b4f5be7e6d9fb1c5a39150ece7de7ee1c3Renamingaddtest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_TwoLayerNewton_btest.cppdeletetest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppaddtest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_Forced_btest.cppdeletetest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppaddtest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_LineSearchNewton_btest.cppdeletetest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_NewtonUR_TurbWake_btest.cppsrc/pde/IBL/FluidModels.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_CapturedTransition_btest.cpp1929a42e6ac3303947b6223637507d0a750f5dd41542943041000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduminor updates 2018-11-22 22:17:21 -05001929a42e6ac3303947b6223637507d0a750f5dd4minor updateseditsrc/pde/IBL/FluidModels.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_CapturedTransition_btest.cpptest/system/CodeConsistency/Solve2D_XfoilLikePanelMethod_btest.cpp43a8232da7e3117a85bdba40dcca170d75095cdd1542944614000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded a to-do 2018-11-22 22:43:34 -050043a8232da7e3117a85bdba40dcca170d75095cddAdded a to-doedittest/system/CodeConsistency/Solve2D_XfoilLikePanelMethod_btest.cpptest/system/CodeConsistency/Solve2D_XfoilLikePanelMethod_btest.cpp617b6cf27c3b75c552fdf159877f6b9c25485f2b1542986159000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadded to-do 2018-11-23 10:15:59 -0500617b6cf27c3b75c552fdf159877f6b9c25485f2badded to-doedittest/system/CodeConsistency/Solve2D_XfoilLikePanelMethod_btest.cpptest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DG_IBL_Panel_ntcrit0p6000_naca0004_ne64_p1_Test_FittedTransition_LFflux.txttest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_TwoLayerNewton_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_LineSearchNewton_btest.cpptest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DG_IBL_Panel_naturalTransition_ntcrit0p6000_naca0004_ne64_p1_Test_FittedTransition_FullUpwind.txttest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DG_IBL_Panel_naturalTransition_ntcrit0p6000_naca0004_ne64_p1_Test_FittedTransition_LFflux.txtsrc/pde/IBL/FluidModels.htest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DG_IBL_Panel_ntcrit0p6000_naca0004_ne64_p1_Test_FittedTransition_FullUpwind.txt99cccecfe88e5bf6936fd86747da126b46db38041543076050000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactored two system tests. Added options to change transition model parameters on the fly 2018-11-24 11:14:10 -050099cccecfe88e5bf6936fd86747da126b46db3804Refactored two system tests. Added options to change transition model parameters on the flyedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_LineSearchNewton_btest.cppdeletetest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DG_IBL_Panel_naturalTransition_ntcrit0p6000_naca0004_ne64_p1_Test_FittedTransition_FullUpwind.txtedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_TwoLayerNewton_btest.cppdeletetest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DG_IBL_Panel_naturalTransition_ntcrit0p6000_naca0004_ne64_p1_Test_FittedTransition_LFflux.txtaddtest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DG_IBL_Panel_ntcrit0p6000_naca0004_ne64_p1_Test_FittedTransition_LFflux.txtaddtest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DG_IBL_Panel_ntcrit0p6000_naca0004_ne64_p1_Test_FittedTransition_FullUpwind.txteditsrc/pde/IBL/FluidModels.hsrc/pde/IBL/PDEIBL2D.h02ae0ed8c30bef59cfc222b18897acfa204ecff41543088187000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed a bug/feature in an unimportant if statement 2018-11-24 14:36:27 -050002ae0ed8c30bef59cfc222b18897acfa204ecff4Fixed a bug/feature in an unimportant if statementeditsrc/pde/IBL/PDEIBL2D.hsrc/pde/IBL/PDEIBL2D.hf138bdd365fcad35c56c1826c8aee321a3a2d3c11543092605000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduCleanup 2018-11-24 15:50:05 -0500f138bdd365fcad35c56c1826c8aee321a3a2d3c1Cleanupeditsrc/pde/IBL/PDEIBL2D.hsrc/pde/IBL/SetTransitionFrontIBL2D_InteriorTraceGroup.hsrc/pde/IBL/PDEIBL2D.hsrc/pde/IBL/SetIBLtransitionFrontCellGroup.h48f2011bf4d2c4bd9dd3181b7600512036ba7a3e1543112017000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduCleaned up deprecated parts. Fixed LF flux. Refactored transition front source/flux. Editted printout 2018-11-24 21:13:37 -050048f2011bf4d2c4bd9dd3181b7600512036ba7a3eCleaned up deprecated parts. Fixed LF flux. Refactored transition front source/flux. Editted printouteditsrc/pde/IBL/SetTransitionFrontIBL2D_InteriorTraceGroup.heditsrc/pde/IBL/PDEIBL2D.heditsrc/pde/IBL/SetIBLtransitionFrontCellGroup.htest/system/Asymptotic/ErrorEstimateOrder_2D_DGAdvective_Triangle_AD_btest.cppsrc/Discretization/Galerkin/IntegrandBoundaryTrace_Flux_mitState_Nitsche.h295237f73ea6480249a69e1984efa26fd96c7f071543114391000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed uninitialized data in Flux_mitState_Nitsche for pure advective. 2018-11-24 21:53:11 -0500295237f73ea6480249a69e1984efa26fd96c7f07Fixed uninitialized data in Flux_mitState_Nitsche for pure advective.editsrc/Discretization/Galerkin/IntegrandBoundaryTrace_Flux_mitState_Nitsche.hedittest/system/Asymptotic/ErrorEstimateOrder_2D_DGAdvective_Triangle_AD_btest.cpptest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DG_IBL_Panel_ntcrit0p6000_naca0004_ne64_p1_Test_FittedTransition_LFflux.txttest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_TwoLayerNewton_btest.cppsrc/pde/IBL/PDEIBL2D.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_LineSearchNewton_btest.cppc1e89c9e784c19f1c48766d24cf0c03a7d6029b21543118172000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduUpdated pyrite file after updating PDEIBL LFflux related stuff 2018-11-24 22:56:12 -0500c1e89c9e784c19f1c48766d24cf0c03a7d6029b2Updated pyrite file after updating PDEIBL LFflux related stuffedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_TwoLayerNewton_btest.cppedittest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DG_IBL_Panel_ntcrit0p6000_naca0004_ne64_p1_Test_FittedTransition_LFflux.txteditsrc/pde/IBL/PDEIBL2D.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_LineSearchNewton_btest.cpptest/system/Adaptation/SolverInterface_DGAdvective_btest.cpptest/system/Adaptation/SolverInterface_DGBR2_btest.cppe21f68fcb7196fff67c5b4962fb5afcd4f54ed321543121566000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduRemoved variable length arrays 2018-11-24 23:52:46 -0500e21f68fcb7196fff67c5b4962fb5afcd4f54ed32Removed variable length arraysedittest/system/Adaptation/SolverInterface_DGBR2_btest.cppedittest/system/Adaptation/SolverInterface_DGAdvective_btest.cppsrc/Field/Element/GalerkinWeightedIntegral_New.htest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DG_IBL_Panel_ntcrit0p6000_naca0004_ne64_p1_Test_FittedTransition_LFflux.txtsrc/Discretization/Galerkin/IntegrandCell_Galerkin_CutCellTransitionIBL.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_TwoLayerNewton_btest.cppsrc/pde/IBL/PDEIBL2D.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_LineSearchNewton_btest.cppsrc/pde/NDConvert/PDENDConvertSpace2D.htest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DG_IBL_Panel_ntcrit0p6000_naca0004_ne64_p1_Test_FittedTransition_FullUpwind.txt7eef0814926e5488077b95b91cb2a18576468bff1543151695000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduReplaced turbulent BL TS wave growth rate with the previous formulation of interpolating over turbulent sub-element, which makes cd vs ntcrit relation smooth. Updated pyrite files for free transition 2018-11-25 08:14:55 -05007eef0814926e5488077b95b91cb2a18576468bffReplaced turbulent BL TS wave growth rate with the previous formulation of interpolating over turbulent sub-element, which makes cd vs ntcrit relation smooth. Updated pyrite files for free transitionedittest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DG_IBL_Panel_ntcrit0p6000_naca0004_ne64_p1_Test_FittedTransition_FullUpwind.txteditsrc/pde/NDConvert/PDENDConvertSpace2D.heditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_CutCellTransitionIBL.heditsrc/pde/IBL/PDEIBL2D.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_LineSearchNewton_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_TwoLayerNewton_btest.cppeditsrc/Field/Element/GalerkinWeightedIntegral_New.hedittest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DG_IBL_Panel_ntcrit0p6000_naca0004_ne64_p1_Test_FittedTransition_LFflux.txttest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_LineSearchNewton_btest.cppsrc/pde/IBL/PDEIBL2D.h8cf64137009f0adc30acd780d5b74be3d367628e1543155564000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduMinor refactoring 2018-11-25 09:19:24 -05008cf64137009f0adc30acd780d5b74be3d367628eMinor refactoringeditsrc/pde/IBL/PDEIBL2D.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_LineSearchNewton_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_CapturedTransition_btest.cpptest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_forcedTransition0p8244925_naca0004_ne64_p1_Test_CapturedTransition_LFflux.txtsrc/pde/IBL/PDEIBLUniField.h0b0ce2e2be16c53d8c01a94ecf4bd9c9e05802081543155873000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed LFflux for IBLUniField. Refactored test case and updated pyrite file 2018-11-25 09:24:33 -05000b0ce2e2be16c53d8c01a94ecf4bd9c9e0580208Fixed LFflux for IBLUniField. Refactored test case and updated pyrite fileedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_CapturedTransition_btest.cppedittest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_forcedTransition0p8244925_naca0004_ne64_p1_Test_CapturedTransition_LFflux.txteditsrc/pde/IBL/PDEIBLUniField.htest/system/Adaptation/SolverInterface_DGAdvective_btest.cpptest/system/Adaptation/SolverInterface_DGBR2_btest.cpp6bfe46aebe18ec4835ced56173a9fcdf7bff9da61543158567000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMissed a few variable length arrays 2018-11-25 10:09:27 -05006bfe46aebe18ec4835ced56173a9fcdf7bff9da6Missed a few variable length arraysedittest/system/Adaptation/SolverInterface_DGBR2_btest.cppedittest/system/Adaptation/SolverInterface_DGAdvective_btest.cpptest/sandbox/Adapt2D_DGBR2_Euler_GilesPierce_AV_toy.cpp9529e02704eaf5ca886dde53eb29997fe51bc6dd1543166231000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduOne more warning 2018-11-25 12:17:11 -05009529e02704eaf5ca886dde53eb29997fe51bc6ddOne more warningedittest/sandbox/Adapt2D_DGBR2_Euler_GilesPierce_AV_toy.cpptest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne64_a0_unifield.txttest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_CapturedTransition_btest.cppsrc/pde/IBL/PDEIBLUniField.ha8879bfd15f2dedaf9cf5e24b4ca5c9a802c11491543172711000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactored PDEIBLUniField member field to allow for parameter ntcrit sweep. Updated initial solution guess to be based on an existing IBL solution. 2018-11-25 14:05:11 -0500a8879bfd15f2dedaf9cf5e24b4ca5c9a802c1149Refactored PDEIBLUniField member field to allow for parameter ntcrit sweep. Updated initial solution guess to be based on an existing IBL solution.edittest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne64_a0_unifield.txtedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_CapturedTransition_btest.cppeditsrc/pde/IBL/PDEIBLUniField.hsrc/Discretization/Galerkin/FunctionalCell_Galerkin.htest/sandbox/Adapt3D_Mesh_Optimizer_toy.cpp915a985b689cfade0d38116cdf323dd5582921641543180188000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed warnings 2018-11-25 16:09:48 -0500915a985b689cfade0d38116cdf323dd558292164Fixed warningseditsrc/Discretization/Galerkin/FunctionalCell_Galerkin.hedittest/sandbox/Adapt3D_Mesh_Optimizer_toy.cpptest/unit/CMakeLists.txtscripts/jenkins/SANS_Commit.sh67e13c5f6d848346ca7faeb73d9c5343b2be996d1543194600000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduBetter cleanup of coverage information 2018-11-25 20:10:00 -050067e13c5f6d848346ca7faeb73d9c5343b2be996dBetter cleanup of coverage informationedittest/unit/CMakeLists.txteditscripts/jenkins/SANS_Commit.shscripts/jenkins/SANS_Nightly.sh22a8f88a4f3a5f6b5bdd6f5fb910ae5bec0e620a1543202716000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduDon't build sandbox with nightly 2018-11-25 22:25:16 -050022a8f88a4f3a5f6b5bdd6f5fb910ae5bec0e620aDon't build sandbox with nightlyeditscripts/jenkins/SANS_Nightly.shscripts/jenkins/SANS_Nightly.sh7233459dcb981a6026c3966fec9e1442c37b0da71543203417000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduClang analyzer should still build sandbox 2018-11-25 22:36:57 -05007233459dcb981a6026c3966fec9e1442c37b0da7Clang analyzer should still build sandboxeditscripts/jenkins/SANS_Nightly.shsrc/Adaptation/MOESS/NodalMetrics.cppsrc/Adaptation/MOESS/NLOPT/MOESS_Gradation_Optimizer_NLOPT.hsrc/Adaptation/MOESS/NodalMetrics.hsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppsrc/Adaptation/MOESS/MOESSParams.hsrc/Adaptation/MOESS/NLOPT/MOESS_Gradation_Optimizer_NLOPT.cpptest/unit/Adaptation/MOESS/MOESS_Gradation_Optimizer_NLOPT_btest_OFF.cppsrc/Adaptation/MOESS/MOESS.cpptest/unit/Adaptation/MOESS/MOESS_Gradation_Optimizer_NLOPT_btest.cpp826e55d01adf6cba4c68c2d3c336d98852ed43ef1543208888000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduRevived gradation penalty. Needs lots of tweaks and studying 2018-11-26 00:08:08 -0500826e55d01adf6cba4c68c2d3c336d98852ed43efRevived gradation penalty. Needs lots of tweaks and studyingeditsrc/Adaptation/MOESS/NodalMetrics.haddtest/unit/Adaptation/MOESS/MOESS_Gradation_Optimizer_NLOPT_btest.cppeditsrc/Adaptation/MOESS/NLOPT/MOESS_Gradation_Optimizer_NLOPT.cppeditsrc/Adaptation/MOESS/NodalMetrics.cppdeletetest/unit/Adaptation/MOESS/MOESS_Gradation_Optimizer_NLOPT_btest_OFF.cppeditsrc/Adaptation/MOESS/MOESS.cppeditsrc/Adaptation/MOESS/NLOPT/MOESS_Gradation_Optimizer_NLOPT.heditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppeditsrc/Adaptation/MOESS/MOESSParams.hsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion2D.htest/unit/pde/AdvectionDiffusion/BCAdvectionDiffusion2D_btest.cpptest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cpp2b45ba49ad9200cb895501b3eb0a6e646a7cce7a1543283501000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.eduAdded unit test for 2D+T implementations. 2018-11-26 20:51:41 -05002b45ba49ad9200cb895501b3eb0a6e646a7cce7aAdded unit test for 2D+T implementations.edittest/unit/pde/AdvectionDiffusion/BCAdvectionDiffusion2D_btest.cppedittest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cppeditsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion2D.htest/unit/UnitGrids/XField4D_1Ptope_X1_1Group.cpptest/unit/UnitGrids/XField4D_1Ptope_X1_1Group_btest.cpptest/unit/UnitGrids/XField4D_1Ptope_X1_1Group.h53e584bf77316a03b27931ba85989d7cfdd49fff1543331294000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.eduWorking on pentatope tests. 2018-11-27 10:08:14 -050053e584bf77316a03b27931ba85989d7cfdd49fffWorking on pentatope tests.edittest/unit/UnitGrids/XField4D_1Ptope_X1_1Group.cppedittest/unit/UnitGrids/XField4D_1Ptope_X1_1Group.hedittest/unit/UnitGrids/XField4D_1Ptope_X1_1Group_btest.cppsrc/Adaptation/MOESS/NLOPT/MOESS_PX_Optimizer_NLOPT.cppe491459eae5248dd578d2fdef414a4ddedd3ad031543333895000https://acdl.mit.edu/csi/user/ursachiursachiursachi@mit.eduChanged scaling factor for objective 2018-11-27 10:51:35 -0500e491459eae5248dd578d2fdef414a4ddedd3ad03Changed scaling factor for objectiveeditsrc/Adaptation/MOESS/NLOPT/MOESS_PX_Optimizer_NLOPT.cppsrc/Adaptation/MOESS/SolverInterface_L2Project.h0f0d8f5a4363aad71c869e008c842487cdb3a04f1543333922000https://acdl.mit.edu/csi/user/ursachiursachiursachi@mit.eduAdded 1D and 2D includes 2018-11-27 10:52:02 -05000f0d8f5a4363aad71c869e008c842487cdb3a04fAdded 1D and 2D includeseditsrc/Adaptation/MOESS/SolverInterface_L2Project.hsrc/Meshing/EGTess/AFLR4.hsrc/Meshing/EGTess/EGTessModel_aflr4.cppsrc/Meshing/EGTess/AFLR4.cppCMakeInclude/Finds/FindAFLR.cmakeCMakeInclude/Checks/aflr_test.cxxc5e08c165fb1316db9029ac1342c2d68e4d72e431543339458000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdates for latest version of AFLR 2018-11-27 12:24:18 -0500c5e08c165fb1316db9029ac1342c2d68e4d72e43Updates for latest version of AFLReditsrc/Meshing/EGTess/EGTessModel_aflr4.cppeditsrc/Meshing/EGTess/AFLR4.cppeditCMakeInclude/Checks/aflr_test.cxxeditCMakeInclude/Finds/FindAFLR.cmakeeditsrc/Meshing/EGTess/AFLR4.hsrc/Adaptation/MOESS/NLOPT/MOESS_Gradation_Optimizer_NLOPT.hsrc/Adaptation/MOESS/NodalMetrics.cppscripts/jenkins/SANS_Commit.shsrc/LinearAlgebra/DenseLinAlg/StaticSize/Eigen/MatrixSymS_Eigen_impl.hsrc/Meshing/Metric/MetricOps.htest/unit/LinearAlgebra/DenseLinAlg/MatrixSymS_Eigen_btest.cppsrc/Adaptation/MOESS/NLOPT/MOESS_Gradation_Optimizer_NLOPT.cppsrc/Meshing/EGTess/EGTessModel_aflr4.cpptest/unit/Adaptation/MOESS/MOESS_Gradation_Optimizer_NLOPT_btest.cpp6ac85ee5a0bfd0502c0a7e965ed9e8ca8f5edf7c1543360069000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduGradation still needs more work... 2018-11-27 18:07:49 -05006ac85ee5a0bfd0502c0a7e965ed9e8ca8f5edf7cGradation still needs more work...editsrc/Meshing/EGTess/EGTessModel_aflr4.cppedittest/unit/Adaptation/MOESS/MOESS_Gradation_Optimizer_NLOPT_btest.cppeditsrc/Adaptation/MOESS/NLOPT/MOESS_Gradation_Optimizer_NLOPT.heditsrc/LinearAlgebra/DenseLinAlg/StaticSize/Eigen/MatrixSymS_Eigen_impl.heditsrc/Adaptation/MOESS/NodalMetrics.cppeditsrc/Adaptation/MOESS/NLOPT/MOESS_Gradation_Optimizer_NLOPT.cppeditscripts/jenkins/SANS_Commit.shedittest/unit/LinearAlgebra/DenseLinAlg/MatrixSymS_Eigen_btest.cppeditsrc/Meshing/Metric/MetricOps.hsrc/LinearAlgebra/DenseLinAlg/StaticSize/Eigen/MatrixSymS_Eigen_impl.h27cdc86edc41fd21c68feb4b813d4b8b7fed44891543360946000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix compiler error 2018-11-27 18:22:26 -050027cdc86edc41fd21c68feb4b813d4b8b7fed4489Fix compiler erroreditsrc/LinearAlgebra/DenseLinAlg/StaticSize/Eigen/MatrixSymS_Eigen_impl.htest/unit/LinearAlgebra/DenseLinAlg/MatrixSymS_Eigen_btest.cpp95b670839c81aad6f7b06e37789e9f6cc0ab261c1543364741000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed arry bound typo in test 2018-11-27 19:25:41 -050095b670839c81aad6f7b06e37789e9f6cc0ab261cFixed arry bound typo in testedittest/unit/LinearAlgebra/DenseLinAlg/MatrixSymS_Eigen_btest.cpptest/unit/Field/Element/ElementXFieldVolume_4D_Tetrahedron_btest.cpp1f00ef3269648633e03deefa745ff0d8b727420b1543444377000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edumore tests for orientations of tets in 4d 2018-11-28 17:32:57 -05001f00ef3269648633e03deefa745ff0d8b727420bmore tests for orientations of tets in 4dedittest/unit/Field/Element/ElementXFieldVolume_4D_Tetrahedron_btest.cpptest/sandbox/Adapt4D_Mesh_Optimizer_toy.cpptest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppeac467a846a696ada30cb0ea1b8de83eae78c9a81543444406000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edulingering changes 2018-11-28 17:33:26 -0500eac467a846a696ada30cb0ea1b8de83eae78c9a8lingering changesedittest/sandbox/Adapt4D_Mesh_Optimizer_toy.cppedittest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppsrc/Field/FieldSpacetime_DG_BoundaryTrace.hsrc/Field/FieldVolume_DG_Cell_Instantiate_4D.cppsrc/Field/FieldSpacetime_DG_InteriorTrace_impl.hsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatMul/MatMul_Native_Real.cppsrc/Field/tools/for_each_GhostBoundaryTraceGroup.hsrc/Field/FieldSpacetime_DG_Trace.hsrc/Field/FieldSpacetime_DG_Trace_impl.hsrc/Field/Element/ElementAssociativitySpacetime.hsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cppsrc/Field/FieldSpacetime_DG_InteriorTrace.htest/unit/UnitGrids/XField_KuhnFreudenthal.cppsrc/Field/FieldSpacetime_DG_Cell_Instantiate_4D.cppsrc/Field/CMakeLists.txtsrc/Field/FieldSpacetime_DG_InteriorTrace_Instantiate_4D.cpptest/sandbox/Adapt3D_DGBR2_AD_HemisphereCylinder_toy.cppsrc/Field/FieldSpacetime_DG_Trace_Instantiate_4D.cppsrc/Field/tools/for_each_BoundaryTraceGroup_Cell.htest/unit/IO/Field/Field4D_DG_Pentatope_pattern.txtsrc/Field/FieldVolume_DG_BoundaryTrace_Instantiate_4D.cppsrc/Field/FieldVolume_DG_InteriorTrace_Instantiate_4D.cppsrc/Field/FieldSpacetime_DG_Cell_impl.hsrc/Field/tools/for_each_GhostBoundaryTraceGroup_Cell.hsrc/Field/FieldSpacetime_DG_Cell.hsrc/Field/FieldSpacetime_DG_BoundaryTrace_Instantiate_4D.cppsrc/Field/FieldSpacetime_DG_BoundaryTrace_impl.htest/unit/Field/Field4D_DG_Pentatope_btest.cppsrc/Field/FieldVolume_DG_Trace_Instantiate_4D.cppsrc/Field/FieldSpacetime_Instantiate_4D.cpp8728668dd3554e569bdc605f804c6f7f6998f9911543444515000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduDG fields in 4d + unit tests 2018-11-28 17:35:15 -05008728668dd3554e569bdc605f804c6f7f6998f991DG fields in 4d + unit testsaddtest/unit/Field/Field4D_DG_Pentatope_btest.cppaddsrc/Field/FieldVolume_DG_BoundaryTrace_Instantiate_4D.cppaddsrc/Field/FieldSpacetime_DG_InteriorTrace_Instantiate_4D.cppeditsrc/Field/tools/for_each_GhostBoundaryTraceGroup_Cell.heditsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cppaddsrc/Field/FieldSpacetime_DG_BoundaryTrace.heditsrc/Field/tools/for_each_GhostBoundaryTraceGroup.haddsrc/Field/FieldVolume_DG_Cell_Instantiate_4D.cppaddsrc/Field/FieldSpacetime_DG_InteriorTrace.heditsrc/Field/tools/for_each_BoundaryTraceGroup_Cell.haddtest/unit/IO/Field/Field4D_DG_Pentatope_pattern.txteditsrc/Field/Element/ElementAssociativitySpacetime.haddsrc/Field/FieldSpacetime_DG_InteriorTrace_impl.haddsrc/Field/FieldSpacetime_DG_Cell.heditsrc/Field/FieldSpacetime_Instantiate_4D.cppedittest/unit/UnitGrids/XField_KuhnFreudenthal.cppedittest/sandbox/Adapt3D_DGBR2_AD_HemisphereCylinder_toy.cppaddsrc/Field/FieldVolume_DG_InteriorTrace_Instantiate_4D.cppaddsrc/Field/FieldVolume_DG_Trace_Instantiate_4D.cppaddsrc/Field/FieldSpacetime_DG_Cell_impl.haddsrc/Field/FieldSpacetime_DG_BoundaryTrace_Instantiate_4D.cppaddsrc/Field/FieldSpacetime_DG_Trace.heditsrc/Field/CMakeLists.txtaddsrc/Field/FieldSpacetime_DG_BoundaryTrace_impl.haddsrc/Field/FieldSpacetime_DG_Cell_Instantiate_4D.cppaddsrc/Field/FieldSpacetime_DG_Trace_Instantiate_4D.cppaddsrc/Field/FieldSpacetime_DG_Trace_impl.heditsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatMul/MatMul_Native_Real.cpptest/unit/UnitGrids/XField_KuhnFreudenthal.cpp4efc359e491a8f1ebfd8e77c6e97f960775f45231543445001000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edusilly typo 2018-11-28 17:43:21 -05004efc359e491a8f1ebfd8e77c6e97f960775f4523silly typoedittest/unit/UnitGrids/XField_KuhnFreudenthal.cpptest/unit/Field/Field4D_DG_Pentatope_btest.cpp5fb723971cedea5c2c12a47e647387552e9acc4c1543450820000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.educan only use KF triangulation if avro is hooked in 2018-11-28 19:20:20 -05005fb723971cedea5c2c12a47e647387552e9acc4ccan only use KF triangulation if avro is hooked inedittest/unit/Field/Field4D_DG_Pentatope_btest.cpptest/unit/Field/Element/ElementXFieldVolume_4D_Tetrahedron_btest.cpptest/unit/UnitGrids/XField4D_1Ptope_X1_1Group_btest.cppsrc/Field/Element/ElementXFieldVolume_Instantiate_4D.cpptest/unit/UnitGrids/XField4D_1Ptope_X1_1Group.cpp62919f7753456dcb271662df0186e2d9bb0e19d51543508105000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.eduWorking on unit grids... 2018-11-29 11:15:05 -050062919f7753456dcb271662df0186e2d9bb0e19d5Working on unit grids...edittest/unit/Field/Element/ElementXFieldVolume_4D_Tetrahedron_btest.cppeditsrc/Field/Element/ElementXFieldVolume_Instantiate_4D.cppedittest/unit/UnitGrids/XField4D_1Ptope_X1_1Group.cppedittest/unit/UnitGrids/XField4D_1Ptope_X1_1Group_btest.cppsrc/pde/AnalyticFunction/ScalarFunction2D.cppsrc/pde/AnalyticFunction/ScalarFunction2D.hsrc/pde/NDConvert/BCNDConvertSpaceTime2D.htest/unit/pde/AnalyticFunction/ScalarFunction2D_btest.cpptest/unit/UnitGrids/XField3D_1Tet_X1_1Group.cppb1d2a67996d840de5b4dedb6c7e48917dc1b5a421543523079000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.eduAnother formatting fix. 2018-11-29 15:24:39 -0500b1d2a67996d840de5b4dedb6c7e48917dc1b5a42Another formatting fix.editsrc/pde/AnalyticFunction/ScalarFunction2D.cppeditsrc/pde/AnalyticFunction/ScalarFunction2D.heditsrc/pde/NDConvert/BCNDConvertSpaceTime2D.hedittest/unit/pde/AnalyticFunction/ScalarFunction2D_btest.cppedittest/unit/UnitGrids/XField3D_1Tet_X1_1Group.cppsrc/pde/AnalyticFunction/ScalarFunction2D.cppsrc/pde/AnalyticFunction/ScalarFunction2D.htest/unit/UnitGrids/XField4D_1Ptope_X1_1Group.cppsrc/pde/NDConvert/BCNDConvertSpaceTime2D.htest/unit/pde/AnalyticFunction/ScalarFunction2D_btest.cpptest/unit/UnitGrids/XField3D_1Tet_X1_1Group.cpp019e9ebde7b561ef1d11d7869be84b2a3f1260ff1543537879000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.eduAnother formatting fix. 2018-11-29 19:31:19 -0500019e9ebde7b561ef1d11d7869be84b2a3f1260ffAnother formatting fix.edittest/unit/UnitGrids/XField4D_1Ptope_X1_1Group.cppedittest/unit/pde/AnalyticFunction/ScalarFunction2D_btest.cppeditsrc/pde/AnalyticFunction/ScalarFunction2D.cppedittest/unit/UnitGrids/XField3D_1Tet_X1_1Group.cppeditsrc/pde/AnalyticFunction/ScalarFunction2D.heditsrc/pde/NDConvert/BCNDConvertSpaceTime2D.hsrc/NonLinearSolver/LineUpdate/NewtonLineUpdate.h368a52820d74d72dedba3997e1b73bfd29ee74591543586181000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduminor editting 2018-11-30 08:56:21 -0500368a52820d74d72dedba3997e1b73bfd29ee7459minor edittingeditsrc/NonLinearSolver/LineUpdate/NewtonLineUpdate.htest/sandbox/Solve3D_DGBR2_AD_ST_toy.cpptest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cppd0f45ac447fd9cb27457d526663b99dbd7f35b931543594368000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.eduFix includes. 2018-11-30 11:12:48 -0500d0f45ac447fd9cb27457d526663b99dbd7f35b93Fix includes.edittest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cppedittest/sandbox/Solve3D_DGBR2_AD_ST_toy.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cpptest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cpptest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cpptest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppad197c1781b41b4e548008f1abe6df5586fdd9bd1543595213000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edupre merge 2018-11-30 11:26:53 -0500ad197c1781b41b4e548008f1abe6df5586fdd9bdpre mergeedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cppedittest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cppedittest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppedittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cpptest/sandbox/Solve3D_DGBR2_AD_ST_toy.cpptest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cpp0b619ee92f6dc121b259964d810a790b99dbc1cb1543605783000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.eduTaking the warning machete to things. 2018-11-30 14:23:03 -05000b619ee92f6dc121b259964d810a790b99dbc1cbTaking the warning machete to things.edittest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cppedittest/sandbox/Solve3D_DGBR2_AD_ST_toy.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_TwoLayerNewton_btest.cpp560bd622424e5b0a1b24812cca12c0f4db1d0eeb1543625728000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactored test case input 2018-11-30 19:55:28 -0500560bd622424e5b0a1b24812cca12c0f4db1d0eebRefactored test case inputedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_TwoLayerNewton_btest.cppsrc/Python/PyDict.cppsrc/UserInterfaces/capsAIM/sansLIPAIM.cpp4bb374e8c053c23879e2289550b8baa9d283efdf1543630870000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUdpates to sansLIPAIM to work with new CAPS dataTransfer setup 2018-11-30 21:21:10 -05004bb374e8c053c23879e2289550b8baa9d283efdfUdpates to sansLIPAIM to work with new CAPS dataTransfer setupeditsrc/UserInterfaces/capsAIM/sansLIPAIM.cppeditsrc/Python/PyDict.cppsrc/Discretization/DG/FunctionalCell_DGBR2.hsrc/Adaptation/MOESS/SolverInterface_L2Project.hsrc/pde/AnalyticFunction/Function4D.hsrc/pde/NDConvert/FunctionNDConvertSpace4D.hsrc/Field/Element/ElementIntegral.hsrc/Discretization/Galerkin/FunctionalCell_Galerkin.hsrc/pde/OutputCell_SolutionErrorSquared.hsrc/pde/AnalyticFunction/CMakeLists.txtsrc/Quadrature/QuadratureSpacetime_Pentatope.cppsrc/pde/AnalyticFunction/ScalarFunction4D.hsrc/pde/NDConvert/OutputNDConvertSpace4D.htest/system/Asymptotic/ErrorOrder_4D_DG_Pentatope_btest.cppsrc/pde/AnalyticFunction/ScalarFunction4D.cppfadc869c20ddb5674a86f6e485d398e232f0381f1543680525000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edusystem test for DG with pentatopes 2018-12-01 11:08:45 -0500fadc869c20ddb5674a86f6e485d398e232f0381fsystem test for DG with pentatopeseditsrc/Discretization/Galerkin/FunctionalCell_Galerkin.haddsrc/pde/AnalyticFunction/Function4D.haddsrc/pde/NDConvert/FunctionNDConvertSpace4D.haddtest/system/Asymptotic/ErrorOrder_4D_DG_Pentatope_btest.cppaddsrc/pde/AnalyticFunction/ScalarFunction4D.cppeditsrc/Adaptation/MOESS/SolverInterface_L2Project.heditsrc/Discretization/DG/FunctionalCell_DGBR2.heditsrc/pde/AnalyticFunction/CMakeLists.txtaddsrc/pde/AnalyticFunction/ScalarFunction4D.heditsrc/Quadrature/QuadratureSpacetime_Pentatope.cppeditsrc/pde/OutputCell_SolutionErrorSquared.haddsrc/pde/NDConvert/OutputNDConvertSpace4D.heditsrc/Field/Element/ElementIntegral.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_LineSearchNewton_btest.cppbdb7a1e90731ec9a7b749a4f43e22c66a39327541543784820000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduMinor update 2018-12-02 16:07:00 -0500bdb7a1e90731ec9a7b749a4f43e22c66a3932754Minor updateedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_LineSearchNewton_btest.cppsrc/pde/IBL/SecondaryVar2D_impl.h96150ada0c0eb19bc4956f5e1b3deac02ea66a6b1543811283000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded an option of wake ctau_eq but not used 2018-12-02 23:28:03 -050096150ada0c0eb19bc4956f5e1b3deac02ea66a6bAdded an option of wake ctau_eq but not usededitsrc/pde/IBL/SecondaryVar2D_impl.htest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cpptest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cpp90de68434afcf4a3d2bcf0feda2579e1229346a61543868721000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumoving to hyper branch 2018-12-03 15:25:21 -050090de68434afcf4a3d2bcf0feda2579e1229346a6moving to hyper branchedittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppedittest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cpptest/unit/Field/Element/ElementXFieldVolume_4D_Tetrahedron_btest.cppsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cpp810750f2e8d2abb45b3dce98317726d98611ff0b1544018974000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduuse SANS convention for trace orientation instead of the one used in avro 2018-12-05 09:09:34 -0500810750f2e8d2abb45b3dce98317726d98611ff0buse SANS convention for trace orientation instead of the one used in avroedittest/unit/Field/Element/ElementXFieldVolume_4D_Tetrahedron_btest.cppeditsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cpptest/unit/UnitGrids/XField4D_2Ptope_X1_1Group.htest/unit/UnitGrids/XField4D_2Ptope_X1_1Group_btest.cpptest/unit/UnitGrids/XField4D_1Ptope_X1_1Group.htest/unit/UnitGrids/XField4D_24Ptope_X1_1Group.cpptest/unit/UnitGrids/XField4D_1Ptope_X1_1Group.cpptest/unit/UnitGrids/XField4D_2Ptope_X1_1Group.cpptest/unit/UnitGrids/CMakeLists.txttest/unit/UnitGrids/XField4D_1Ptope_X1_1Group_btest.cppsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cpptest/unit/UnitGrids/XField4D_24Ptope_X1_1Group.h9e414fadd2ffe382f44a11fbc4f84afd0bd93e021544027327000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.edu1Ptope test working, fixed assumptions on nodal definitions. 2018-12-05 11:28:47 -05009e414fadd2ffe382f44a11fbc4f84afd0bd93e021Ptope test working, fixed assumptions on nodal definitions.addtest/unit/UnitGrids/XField4D_24Ptope_X1_1Group.cppaddtest/unit/UnitGrids/XField4D_2Ptope_X1_1Group.cppedittest/unit/UnitGrids/CMakeLists.txteditsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cppedittest/unit/UnitGrids/XField4D_1Ptope_X1_1Group.cppedittest/unit/UnitGrids/XField4D_1Ptope_X1_1Group.hedittest/unit/UnitGrids/XField4D_1Ptope_X1_1Group_btest.cppaddtest/unit/UnitGrids/XField4D_2Ptope_X1_1Group.haddtest/unit/UnitGrids/XField4D_24Ptope_X1_1Group.haddtest/unit/UnitGrids/XField4D_2Ptope_X1_1Group_btest.cpptest/unit/UnitGrids/XField4D_2Ptope_X1_1Group_btest.cpptest/unit/UnitGrids/XField4D_2Ptope_X1_1Group.cppf49465be1bc433a80c5ec11a3a5ac0efbfee95d21544040671000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.edu2Tope unitgrid working, testcase working. 2018-12-05 15:11:11 -0500f49465be1bc433a80c5ec11a3a5ac0efbfee95d22Tope unitgrid working, testcase working.edittest/unit/UnitGrids/XField4D_2Ptope_X1_1Group_btest.cppedittest/unit/UnitGrids/XField4D_2Ptope_X1_1Group.cpptest/unit/UnitGrids/XField4D_24Ptope_X1_1Group.cppc3bab4064cf09db649182fcf4b05a20eea38fd421544042224000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.eduTurned off tesseract for push. 2018-12-05 15:37:04 -0500c3bab4064cf09db649182fcf4b05a20eea38fd42Turned off tesseract for push.edittest/unit/UnitGrids/XField4D_24Ptope_X1_1Group.cppCMakeInclude/Dependencies.cmakesrc/Field/output_Tecplot_LIP.cpp43d23bf3443ddd8c45f4cb3bc777936dac628f321544069399000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduLight LIP tecplot files 2018-12-05 23:09:59 -050043d23bf3443ddd8c45f4cb3bc777936dac628f32Light LIP tecplot fileseditCMakeInclude/Dependencies.cmakeeditsrc/Field/output_Tecplot_LIP.cppsrc/Field/output_Tecplot_LIP.cppcb27cd5abadf2ddb41d0f091741314e7a52154a81544099920000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduSmaller tecplot file for LIP 2018-12-06 07:38:40 -0500cb27cd5abadf2ddb41d0f091741314e7a52154a8Smaller tecplot file for LIPeditsrc/Field/output_Tecplot_LIP.cpptest/unit/UnitGrids/XField4D_2Ptope_X1_1Group_btest.cpptest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cpp6dbdd89f202da2a4093f323b5f1283c9197156e21544104715000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.eduFix scoping issues. 2018-12-06 08:58:35 -05006dbdd89f202da2a4093f323b5f1283c9197156e2Fix scoping issues.edittest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cppedittest/unit/UnitGrids/XField4D_2Ptope_X1_1Group_btest.cppsrc/Field/output_Tecplot_LIP.cpp518605af44990db3daff5833fb6657ed201941091544110475000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed warnings 2018-12-06 10:34:35 -0500518605af44990db3daff5833fb6657ed20194109Fixed warningseditsrc/Field/output_Tecplot_LIP.cppsrc/LinearAlgebra/DenseLinAlg/StaticSize/SVD/MatrixS_SVD_3x3.cpp9abd62d0c1bded33c72bcec8eac5fbcc6416b8f91544112000000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded comment with origin of SVD3 algorithm 2018-12-06 11:00:00 -05009abd62d0c1bded33c72bcec8eac5fbcc6416b8f9Added comment with origin of SVD3 algorithmeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/SVD/MatrixS_SVD_3x3.cpptest/unit/UnitGrids/XField4D_library.cpptest/unit/UnitGrids/XField4D_library.htest/unit/UnitGrids/XField4D_library_btest.cppf8a10acd056f6d59d644ecea471fcbd8dc816c761544125421000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduhandmade unit grid: 1 pentatope with 5 pentatope neighbours 2018-12-06 14:43:41 -0500f8a10acd056f6d59d644ecea471fcbd8dc816c76handmade unit grid: 1 pentatope with 5 pentatope neighboursaddtest/unit/UnitGrids/XField4D_library.haddtest/unit/UnitGrids/XField4D_library_btest.cppaddtest/unit/UnitGrids/XField4D_library.cppsrc/Field/XFieldSpacetime_checkGrid_impl.h5721f97bf124de29b04b5418ece01f35ebafe1311544125483000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduallow all orientations of traces (1 to 12) in checkGrid 2018-12-06 14:44:43 -05005721f97bf124de29b04b5418ece01f35ebafe131allow all orientations of traces (1 to 12) in checkGrideditsrc/Field/XFieldSpacetime_checkGrid_impl.hsrc/Field/XFieldSpacetime_Local.cppsrc/Field/XFieldSpacetime_Local.h3e2e014c53a8a6e15b44554d41a31656cf16e4d61544125516000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edulocal grid extraction for pentatopes 2018-12-06 14:45:16 -05003e2e014c53a8a6e15b44554d41a31656cf16e4d6local grid extraction for pentatopesaddsrc/Field/XFieldSpacetime_Local.cppaddsrc/Field/XFieldSpacetime_Local.hsrc/Field/XField_CellToTrace.hsrc/Field/XField_CellToTrace.cppec0c2d07c0fe189180864ebc40252ea42aa2ffa91544125535000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.educell to trace connectivity for pentatopes 2018-12-06 14:45:35 -0500ec0c2d07c0fe189180864ebc40252ea42aa2ffa9cell to trace connectivity for pentatopeseditsrc/Field/XField_CellToTrace.cppeditsrc/Field/XField_CellToTrace.hsrc/Field/Element/ElementAssociativitySpacetimeConstructor.cpptest/unit/Field/Element/ElementAssociativitySpacetime_Pentatope_btest.cppd11ef7a2df93695fc4067710c7798e35e9b6fc001544125587000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edufinish implementation of element associativity of pentatopes 2018-12-06 14:46:27 -0500d11ef7a2df93695fc4067710c7798e35e9b6fc00finish implementation of element associativity of pentatopesedittest/unit/Field/Element/ElementAssociativitySpacetime_Pentatope_btest.cppeditsrc/Field/Element/ElementAssociativitySpacetimeConstructor.cpptest/unit/Field/XField4D_Local_btest.cpp67a7808dca47b507a8c36680fecc347efb6dc1b31544125659000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduunit tests for local grid extraction around pentatopes (single pentatope and single pentatope surrounded by neighbours) 2018-12-06 14:47:39 -050067a7808dca47b507a8c36680fecc347efb6dc1b3unit tests for local grid extraction around pentatopes (single pentatope and single pentatope surrounded by neighbours)addtest/unit/Field/XField4D_Local_btest.cppsrc/Field/CMakeLists.txttest/system/Asymptotic/ErrorOrder_4D_DG_Pentatope_btest.cpptest/unit/UnitGrids/CMakeLists.txtsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cppa591fc6014b28850b315bf80a198eac1874cc86f1544125672000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduother minor changes 2018-12-06 14:47:52 -0500a591fc6014b28850b315bf80a198eac1874cc86fother minor changesedittest/system/Asymptotic/ErrorOrder_4D_DG_Pentatope_btest.cppeditsrc/Field/CMakeLists.txteditsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cppedittest/unit/UnitGrids/CMakeLists.txttest/unit/UnitGrids/XField4D_library.cppb7e85dc85f36c9c8a495a39d14e73fdc89661d681544144079000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.educomm rank = 0 using xfield_lagrange 2018-12-06 19:54:39 -0500b7e85dc85f36c9c8a495a39d14e73fdc89661d68comm rank = 0 using xfield_lagrangeedittest/unit/UnitGrids/XField4D_library.cpptest/unit/UnitGrids/CMakeLists.txttest/unit/UnitGrids/XField4D_24Ptope_X1_1Group_btest.cpptest/unit/UnitGrids/XField4D_24Ptope_X1_1Group.cpp712c4b24d3d4c7f8c9965c8223ae9d66edba0d5f1544164413000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.edu24Ptope working, passing checkGrids(). test in progress. 2018-12-07 01:33:33 -0500712c4b24d3d4c7f8c9965c8223ae9d66edba0d5f24Ptope working, passing checkGrids(). test in progress.addtest/unit/UnitGrids/XField4D_24Ptope_X1_1Group_btest.cppedittest/unit/UnitGrids/CMakeLists.txtedittest/unit/UnitGrids/XField4D_24Ptope_X1_1Group.cpptest/unit/UnitGrids/XField4D_library.cpptest/unit/Field/XField4D_Local_btest.cpptest/unit/UnitGrids/XField4D_library_btest.cpptest/unit/UnitGrids/XField4D_library.hbe0464fd63101ae3378d828223f4da87b43ad3851544188414000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduremove duplicate unit grids in favour of handmade ones 2018-12-07 08:13:34 -0500be0464fd63101ae3378d828223f4da87b43ad385remove duplicate unit grids in favour of handmade onesedittest/unit/UnitGrids/XField4D_library_btest.cppedittest/unit/UnitGrids/XField4D_library.cppedittest/unit/Field/XField4D_Local_btest.cppedittest/unit/UnitGrids/XField4D_library.htest/unit/Field/Element/ElementAssociativitySpacetime_Pentatope_btest.cpp8cb2810769847ba1ad6775d7f6fb28b91a2986f81544192236000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduwarning fix 2018-12-07 09:17:16 -05008cb2810769847ba1ad6775d7f6fb28b91a2986f8warning fixedittest/unit/Field/Element/ElementAssociativitySpacetime_Pentatope_btest.cpptest/unit/Field/Element/ElementAssociativitySpacetime_Pentatope_btest.cpp29752ca6845f5ee88694db4662306f411e455f681544192277000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduwarning fix 2018-12-07 09:17:57 -050029752ca6845f5ee88694db4662306f411e455f68warning fixedittest/unit/Field/Element/ElementAssociativitySpacetime_Pentatope_btest.cpptest/unit/UnitGrids/XField4D_24Ptope_X1_1Group_btest.cpptest/unit/UnitGrids/XField4D_24Ptope_X1_1Group.cppa588ebfd84bc71d2111b8bf1897e2ee94e4d83a91544208439000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.edu24Ptope unit grid working, tested and working. 2018-12-07 13:47:19 -0500a588ebfd84bc71d2111b8bf1897e2ee94e4d83a924Ptope unit grid working, tested and working.edittest/unit/UnitGrids/XField4D_24Ptope_X1_1Group_btest.cppedittest/unit/UnitGrids/XField4D_24Ptope_X1_1Group.cppscripts/jenkins/SANS_email.templatea80ac45c2d42fec7802e37bed102717f245cf33b1544219324000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdd duration to each build in Jenkins email. 2018-12-07 16:48:44 -0500a80ac45c2d42fec7802e37bed102717f245cf33bAdd duration to each build in Jenkins email.editscripts/jenkins/SANS_email.templatesrc/Field/XFieldLine_EdgeLocal.cppsrc/Field/XField_Local_Common_Instantiate_3D.cppsrc/Field/XField_Local_Common_Instantiate_1D.cppsrc/Field/XFieldVolume_EdgeLocal.cppsrc/Field/XField_Local_Common_Instantiate_2D.cppsrc/Field/XField_Local_Common.hsrc/Field/XField_ElementLocal_impl.h8f4961e6a82e01dea792ba6a3228655f402ce39c1544468116000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edutweaks and removed a bunch of heap memory allocations 2018-12-10 13:55:16 -05008f4961e6a82e01dea792ba6a3228655f402ce39ctweaks and removed a bunch of heap memory allocationseditsrc/Field/XField_ElementLocal_impl.heditsrc/Field/XFieldVolume_EdgeLocal.cppeditsrc/Field/XField_Local_Common.heditsrc/Field/XField_Local_Common_Instantiate_2D.cppeditsrc/Field/XFieldLine_EdgeLocal.cppeditsrc/Field/XField_Local_Common_Instantiate_1D.cppeditsrc/Field/XField_Local_Common_Instantiate_3D.cppsrc/pde/AnalyticFunction/ScalarFunction2D.hsrc/pde/AnalyticFunction/ScalarFunction2D.cpp6c10e2d75453b6e60d9bb53427083413a0be657b1544468322000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduadded options to the quadratic 2018-12-10 13:58:42 -05006c10e2d75453b6e60d9bb53427083413a0be657badded options to the quadraticeditsrc/pde/AnalyticFunction/ScalarFunction2D.heditsrc/pde/AnalyticFunction/ScalarFunction2D.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cppa928f852d328b4abe5273cbcef3daba0ddb559491544508074000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumods for running with avro 2018-12-11 01:01:14 -0500a928f852d328b4abe5273cbcef3daba0ddb55949mods for running with avroedittest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppsrc/Adaptation/MOESS/SolverInterface_L2Project.hsrc/Adaptation/MOESS/SolverInterface.hb7a5c55df6480c47e054736da2edfec1e9240f7e1544510181000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educomment typos 2018-12-11 01:36:21 -0500b7a5c55df6480c47e054736da2edfec1e9240f7ecomment typoseditsrc/Adaptation/MOESS/SolverInterface.heditsrc/Adaptation/MOESS/SolverInterface_L2Project.htest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpp652a13bccccfc9e4a6e7aec18e9fb8ef34c5dd621544510215000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduswitching over to avro 2018-12-11 01:36:55 -0500652a13bccccfc9e4a6e7aec18e9fb8ef34c5dd62switching over to avroedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppCMakeInclude/Checks/CheckAVRO.cmakeCMakeInclude/Builds/BuildPARMETIS.cmakeCMakeInclude/Builds/parmetis-xyzpart.patchscripts/jenkins/jenkins_env.shCMakeInclude/Builds/BuildREFINE.cmakeCMakeInclude/Builds/parmetis-CMakeLists.patchsrc/Meshing/avro/CMakeLists.txtCMakeInclude/Builds/BuildAVRO.cmakeCMakeInclude/Builds/parmetis-metis-CMakeLists.patchCMakeInclude/Dependencies.cmakeCMakeInclude/Finds/FindAVRO.cmakeCMakeInclude/Finds/FindREFINE.cmakecd8449d7027fb479512b3e6b57de28bcccd2b9771544568105000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduReworked build of parmetis. refine uses parmetis. added avro build. 2018-12-11 17:41:45 -0500cd8449d7027fb479512b3e6b57de28bcccd2b977Reworked build of parmetis. refine uses parmetis. added avro build.editsrc/Meshing/avro/CMakeLists.txteditCMakeInclude/Dependencies.cmakeeditCMakeInclude/Builds/BuildREFINE.cmakeeditscripts/jenkins/jenkins_env.shaddCMakeInclude/Builds/BuildAVRO.cmakeeditCMakeInclude/Builds/BuildPARMETIS.cmakeaddCMakeInclude/Builds/parmetis-metis-CMakeLists.patcheditCMakeInclude/Builds/parmetis-xyzpart.patchaddCMakeInclude/Builds/parmetis-CMakeLists.patcheditCMakeInclude/Finds/FindAVRO.cmakeeditCMakeInclude/Finds/FindREFINE.cmakeaddCMakeInclude/Checks/CheckAVRO.cmakesrc/Meshing/refine/MesherInterface_refine.cppsrc/Meshing/refine/MultiScale_metric.cpptest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_avro_toy.cpp23396e0183c41289bd872f03dada128fac3abafb1544587136000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixes for avro and refine 2018-12-11 22:58:56 -050023396e0183c41289bd872f03dada128fac3abafbFixes for avro and refineeditsrc/Meshing/refine/MesherInterface_refine.cppeditsrc/Meshing/refine/MultiScale_metric.cppedittest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_avro_toy.cppsrc/Adaptation/MOESS/SolverInterface_L2Project.h07fa7434e039dd0f6679b95ed65e76cbe3d5dd1c1544587325000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduSuppress warning 2018-12-11 23:02:05 -050007fa7434e039dd0f6679b95ed65e76cbe3d5dd1cSuppress warningeditsrc/Adaptation/MOESS/SolverInterface_L2Project.htest/unit/Meshing/EGTess/XFieldDomain_btest.cpptest/unit/Meshing/refine/CMakeLists.txttest/unit/Field/Field4D_DG_Pentatope_btest.cppe3867ae868109acaefafde3459f0d06b17a822831544617659000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduParallel Field4D test fixes. Give refine more time. 2018-12-12 07:27:39 -0500e3867ae868109acaefafde3459f0d06b17a82283Parallel Field4D test fixes. Give refine more time.edittest/unit/Meshing/EGTess/XFieldDomain_btest.cppedittest/unit/Meshing/refine/CMakeLists.txtedittest/unit/Field/Field4D_DG_Pentatope_btest.cpptest/unit/Field/Field4D_DG_Pentatope_btest.cpp4e46714d682bfb448c1b4e7d85501df42973d3a61544622690000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduRelaxed tolerance for intel 2018-12-12 08:51:30 -05004e46714d682bfb448c1b4e7d85501df42973d3a6Relaxed tolerance for inteledittest/unit/Field/Field4D_DG_Pentatope_btest.cpptest/system/Asymptotic/ErrorOrder_4D_DG_Pentatope_btest.cppc0d2c23179f6d692434feaae8792474dd21355731544628849000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduDon't run ErrorOrder_4D in parallel 2018-12-12 10:34:09 -0500c0d2c23179f6d692434feaae8792474dd2135573Don't run ErrorOrder_4D in paralleledittest/system/Asymptotic/ErrorOrder_4D_DG_Pentatope_btest.cppCMakeInclude/CompilerFlags.cmakeCMakeInclude/Builds/BuildREFINE.cmake5740015ac211e51c0b7942c38a91bf996276eced1544631850000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdated refine build 2018-12-12 11:24:10 -05005740015ac211e51c0b7942c38a91bf996276ecedUpdated refine buildeditCMakeInclude/Builds/BuildREFINE.cmakeeditCMakeInclude/CompilerFlags.cmakeCMakeInclude/Checks/ref_check.c613f8f9c6d04a74e477d93504c5d59b12a2d991b1544635943000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdated refine check 2018-12-12 12:32:23 -0500613f8f9c6d04a74e477d93504c5d59b12a2d991bUpdated refine checkeditCMakeInclude/Checks/ref_check.ctest/unit/UnitGrids/XField4D_1Ptope_X1_1Group_btest.cpptest/unit/UnitGrids/XField4D_2Ptope_X1_1Group_btest.cpptest/unit/UnitGrids/XField4D_24Ptope_X1_1Group_btest.cpp3c897f50563638011ec82dbc6d27003bf228aa9d1544637423000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.eduNightly build fixes... plus a stopgap ifdef until the SVDless 4D normal vector is done. 2018-12-12 12:57:03 -05003c897f50563638011ec82dbc6d27003bf228aa9dNightly build fixes... plus a stopgap ifdef until the SVDless 4D normal vector is done.edittest/unit/UnitGrids/XField4D_1Ptope_X1_1Group_btest.cppedittest/unit/UnitGrids/XField4D_24Ptope_X1_1Group_btest.cppedittest/unit/UnitGrids/XField4D_2Ptope_X1_1Group_btest.cpptest/system/Asymptotic/ErrorOrder_4D_DG_Pentatope_btest.cpptest/unit/Meshing/refine/CMakeLists.txtsrc/pde/AnalyticFunction/ScalarFunction4D.htest/system/Asymptotic/CMakeLists.txtd303a72173f965521eaaae210ab7be940edf50821544646713000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduReduce run time of 4D error order check 2018-12-12 15:31:53 -0500d303a72173f965521eaaae210ab7be940edf5082Reduce run time of 4D error order checkedittest/system/Asymptotic/ErrorOrder_4D_DG_Pentatope_btest.cppeditsrc/pde/AnalyticFunction/ScalarFunction4D.hedittest/system/Asymptotic/CMakeLists.txtedittest/unit/Meshing/refine/CMakeLists.txttest/unit/Field/Field4D_DG_Pentatope_btest.cppfaa2049d4ae8b6e88ad8b73bf1e9aa4e89169cec1544654337000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduRelaxed another tolerance 2018-12-12 17:38:57 -0500faa2049d4ae8b6e88ad8b73bf1e9aa4e89169cecRelaxed another toleranceedittest/unit/Field/Field4D_DG_Pentatope_btest.cpptest/unit/Meshing/avro/MesherInterface_avro_btest.cppb230efcc04ea2edefa2bcdfa8b9c8f17f6ae28901544663877000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduRemove files written by avro 2018-12-12 20:17:57 -0500b230efcc04ea2edefa2bcdfa8b9c8f17f6ae2890Remove files written by avroedittest/unit/Meshing/avro/MesherInterface_avro_btest.cppCMakeInclude/CompilerFlags.cmakescripts/jenkins/cmake_jenkins.sh3495cc8647de6f892981f450d0f7584dbd2f4c081544672718000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduDissable refine testing for now 2018-12-12 22:45:18 -05003495cc8647de6f892981f450d0f7584dbd2f4c08Dissable refine testing for noweditCMakeInclude/CompilerFlags.cmakeeditscripts/jenkins/cmake_jenkins.shCMakeInclude/Builds/BuildPARMETIS.cmake72e40e78564e371403e84622cebbda283a3e3daa1544726306000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded memcheck to parmetis build 2018-12-13 13:38:26 -050072e40e78564e371403e84622cebbda283a3e3daaAdded memcheck to parmetis buildeditCMakeInclude/Builds/BuildPARMETIS.cmake.gitignore392080fad078f87a96acb39af20076f4381ccdf61544726378000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduIgnore external parmetis 2018-12-13 13:39:38 -0500392080fad078f87a96acb39af20076f4381ccdf6Ignore external parmetisedit.gitignoretest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cppc40af94a080becd063776dcba132de2100af44d01544799091000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educhanging branch 2018-12-14 09:51:31 -0500c40af94a080becd063776dcba132de2100af44d0changing branchedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppedittest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cppscripts/valgrind/Ubuntu.suppe5c270b429c815c6146f9ff58289dd56d951103e1544975846000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduGeneralized valgrind suppression 2018-12-16 10:57:26 -0500e5c270b429c815c6146f9ff58289dd56d951103eGeneralized valgrind suppressioneditscripts/valgrind/Ubuntu.supptest/unit/UnitGrids/XField_KuhnFreudenthal.cpp16f40985fdda4333f6659f9173ac1e69bc3e9dc31545069922000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduegads coords must have 3 dimensions even in 2d 2018-12-17 13:05:22 -050016f40985fdda4333f6659f9173ac1e69bc3e9dc3egads coords must have 3 dimensions even in 2dedittest/unit/UnitGrids/XField_KuhnFreudenthal.cpptest/unit/Discretization/Block/CMakeLists.txt4bdfd28713bbd251535227a68bbff8794b1b80ad1545268694000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduSuppressed CMakeLists errors. [TBD] 2018-12-19 20:18:14 -05004bdfd28713bbd251535227a68bbff8794b1b80adSuppressed CMakeLists errors. [TBD]edittest/unit/Discretization/Block/CMakeLists.txttest/unit/PanelMethod/ProjectionToQauxi_IBL_btest.cppsrc/pde/IBL/QauxvInterpret2D.h71792680c61f2d5ef5fbfeb3ecaab4ea1cbaba081545268705000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed panel metod tests 2018-12-19 20:18:25 -050071792680c61f2d5ef5fbfeb3ecaab4ea1cbaba08Fixed panel metod testseditsrc/pde/IBL/QauxvInterpret2D.hedittest/unit/PanelMethod/ProjectionToQauxi_IBL_btest.cppsrc/Meshing/EGTess/AFLR4.cppscripts/jenkins/Makefile.jenkinsscripts/jenkins/jenkins_env.shCMakeInclude/Checks/CheckREFINE.cmaketest/unit/Meshing/refine/refine3D_btest.cppscripts/jenkins/configure_jenkins.shsrc/Meshing/EGTess/AFLR4.hsrc/Meshing/EGTess/EGTessModel_aflr4.cppscripts/jenkins/SANS_Depend.sh6a9faf294b0672a0130a598501cccf41bbe7f4fa1545341442000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAFLR4 updates and some Jenkins scripts 2018-12-20 16:30:42 -05006a9faf294b0672a0130a598501cccf41bbe7f4faAFLR4 updates and some Jenkins scriptseditsrc/Meshing/EGTess/AFLR4.heditscripts/jenkins/Makefile.jenkinsedittest/unit/Meshing/refine/refine3D_btest.cppeditscripts/jenkins/configure_jenkins.sheditsrc/Meshing/EGTess/EGTessModel_aflr4.cppeditCMakeInclude/Checks/CheckREFINE.cmakeaddscripts/jenkins/SANS_Depend.sheditscripts/jenkins/jenkins_env.sheditsrc/Meshing/EGTess/AFLR4.cppCMakeInclude/Dependencies.cmake84def710f32f97668f889f72b27eff96cad229551545421520000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduLink tetgen before avro 2018-12-21 14:45:20 -050084def710f32f97668f889f72b27eff96cad22955Link tetgen before avroeditCMakeInclude/Dependencies.cmakesrc/Field/XFieldSpacetime_ElementLocal.cppsrc/Field/XField_Local_Common_Instantiate_4D.cppsrc/Field/XFieldSpacetime_EdgeLocal.cpptest/unit/Field/XField4D_ElementLocal_btest.cppa49ac2e5ddf048417b0a916ed7d501c99959bac81545426620000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduinstantation of elementlocal version of local splits for 4d...unit test will fail because the result is different than savi's convention 2018-12-21 16:10:20 -0500a49ac2e5ddf048417b0a916ed7d501c99959bac8instantation of elementlocal version of local splits for 4d...unit test will fail because the result is different than savi's conventionaddsrc/Field/XField_Local_Common_Instantiate_4D.cppaddtest/unit/Field/XField4D_ElementLocal_btest.cppaddsrc/Field/XFieldSpacetime_EdgeLocal.cppaddsrc/Field/XFieldSpacetime_ElementLocal.cppsrc/Field/XField.hsrc/Field/Partition/XField_Lagrange.cppsrc/BasisFunction/BasisFunction_RefElement_Split.cppsrc/Field/XField_Local_Common.htest/unit/Field/CMakeLists.txtsrc/Field/Partition/LagrangeElementGroup.cppsrc/Field/Partition/LagrangeElementGroup.hsrc/Field/XField_EdgeLocal.hsrc/Field/XField_impl.hsrc/BasisFunction/BasisFunction_RefElement_Split.hsrc/Field/Partition/XField_Lagrange.hsrc/Field/XField_EdgeLocal_impl.hsrc/Field/CMakeLists.txtsrc/Field/XField_ElementLocal_impl.h2374219e4496a688af2222a9b10931aef9c6bedc1545426654000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edumissing definitions for elementlocal & edgelocal 2018-12-21 16:10:54 -05002374219e4496a688af2222a9b10931aef9c6bedcmissing definitions for elementlocal & edgelocaleditsrc/Field/CMakeLists.txtedittest/unit/Field/CMakeLists.txteditsrc/Field/XField.heditsrc/BasisFunction/BasisFunction_RefElement_Split.cppeditsrc/Field/XField_ElementLocal_impl.heditsrc/Field/Partition/LagrangeElementGroup.cppeditsrc/Field/Partition/LagrangeElementGroup.heditsrc/Field/Partition/XField_Lagrange.heditsrc/Field/XField_EdgeLocal_impl.heditsrc/Field/XField_impl.heditsrc/Field/XField_Local_Common.heditsrc/Field/XField_EdgeLocal.heditsrc/BasisFunction/BasisFunction_RefElement_Split.heditsrc/Field/Partition/XField_Lagrange.cppsrc/Field/XFieldSpacetime_Local_Split.cpptest/unit/Field/XField4D_Local_Split_EdgeSplits_btest.cppsrc/Field/XFieldSpacetime_Local_Split_Linear_Edge.hsrc/Field/XFieldSpacetime_Local_Split.hsrc/Field/XFieldSpacetime_Local_Split_Linear_Edge.cpptest/unit/Field/XField4D_Local_Split_Linear_EdgeSplits_btest.cppc5ce3c43d74b56336e1d7123edcca30f790e72361545426703000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edusome instantiations of savi's method for doing local splits 2018-12-21 16:11:43 -0500c5ce3c43d74b56336e1d7123edcca30f790e7236some instantiations of savi's method for doing local splitsaddsrc/Field/XFieldSpacetime_Local_Split.cppaddsrc/Field/XFieldSpacetime_Local_Split_Linear_Edge.cppaddtest/unit/Field/XField4D_Local_Split_EdgeSplits_btest.cppaddsrc/Field/XFieldSpacetime_Local_Split_Linear_Edge.haddtest/unit/Field/XField4D_Local_Split_Linear_EdgeSplits_btest.cppaddsrc/Field/XFieldSpacetime_Local_Split.htest/unit/Field/Local/CMakeLists.txtsrc/Field/Local/XField_LocalPatch.htest/unit/Field/Local/XField_LocalPatch_Triangle_btest.cppsrc/Field/Local/XField_LocalPatch.cpptest/unit/Field/Local/XField_LocalPatch_Pentatope_btest.cpptest/unit/Field/Local/XField_LocalPatch_Tet_btest.cpp97b60b2952c79debc77beae2cf28fc91267faa5b1545426759000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduxfield_lagrange method of doing local splits...still debugging...will fix later... 2018-12-21 16:12:39 -050097b60b2952c79debc77beae2cf28fc91267faa5bxfield_lagrange method of doing local splits...still debugging...will fix later...addsrc/Field/Local/XField_LocalPatch.haddtest/unit/Field/Local/XField_LocalPatch_Pentatope_btest.cppaddtest/unit/Field/Local/XField_LocalPatch_Tet_btest.cppaddtest/unit/Field/Local/XField_LocalPatch_Triangle_btest.cppaddsrc/Field/Local/XField_LocalPatch.cppaddtest/unit/Field/Local/CMakeLists.txtsrc/pde/IBL/SpaldingLawModified.htest/unit/pde/IBL/VarInterpret2D_btest.cppsrc/pde/IBL/VarInterpret2D.hdc3cfd8ac904d3a0f04df6a2cd722e977ec8c1fb1545707550000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactoring. Patched unit tests 2018-12-24 22:12:30 -0500dc3cfd8ac904d3a0f04df6a2cd722e977ec8c1fbRefactoring. Patched unit testseditsrc/pde/IBL/SpaldingLawModified.hedittest/unit/pde/IBL/VarInterpret2D_btest.cppeditsrc/pde/IBL/VarInterpret2D.hsrc/pde/IBL/QauxvInterpret2D.htest/unit/pde/IBL/QauxvInterpret2D_btest.cpp259db89f1bee6ccabb55594700e1c472ceacb33a1545709222000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduMore unit tests 2018-12-24 22:40:22 -0500259db89f1bee6ccabb55594700e1c472ceacb33aMore unit testseditsrc/pde/IBL/QauxvInterpret2D.haddtest/unit/pde/IBL/QauxvInterpret2D_btest.cpptest/unit/pde/IBL/QauxvInterpret2D_btest.cpped100c1e283e23b59f48226c9cf3cf3422aaa4e41545746014000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadded unit tests 2018-12-25 08:53:34 -0500ed100c1e283e23b59f48226c9cf3cf3422aaa4e4added unit testsedittest/unit/pde/IBL/QauxvInterpret2D_btest.cpptest/unit/pde/IBL/ElementProjectionIBLoutput_L2_btest.cpptest/unit/pde/IBL/SetIBLoutputCellGroup_btest.cppsrc/pde/IBL/PDEIBL2D.h8868aa042aac26b368904fd2475f3be80485f2aa1545747649000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed unit tests 2018-12-25 09:20:49 -05008868aa042aac26b368904fd2475f3be80485f2aaFixed unit testsedittest/unit/pde/IBL/SetIBLoutputCellGroup_btest.cppedittest/unit/pde/IBL/ElementProjectionIBLoutput_L2_btest.cppeditsrc/pde/IBL/PDEIBL2D.htest/unit/pde/IBL/BCIBL2D_btest.cpptest/unit/pde/IBL/PDEIBLUniField2D_btest.cpptest/unit/pde/IBL/FluidModels_btest.cppsrc/pde/IBL/FluidModels.htest/unit/pde/IBL/PDEIBL2D_btest.cppab3f80f945e99bb54c01ecd90e94908d68c517a61545755594000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed IBL unit tests 2018-12-25 11:33:14 -0500ab3f80f945e99bb54c01ecd90e94908d68c517a6Fixed IBL unit testsedittest/unit/pde/IBL/BCIBL2D_btest.cppedittest/unit/pde/IBL/FluidModels_btest.cppedittest/unit/pde/IBL/PDEIBL2D_btest.cppeditsrc/pde/IBL/FluidModels.hedittest/unit/pde/IBL/PDEIBLUniField2D_btest.cpptest/unit/pde/IBL/FluidModels_btest.cppsrc/pde/IBL/FluidModels.hef2d56d872a19bcdc4099f1af959d806ce16e1751545780060000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded unit test. Turned off unused methods. 2018-12-25 18:21:00 -0500ef2d56d872a19bcdc4099f1af959d806ce16e175Added unit test. Turned off unused methods.edittest/unit/pde/IBL/FluidModels_btest.cppeditsrc/pde/IBL/FluidModels.htest/unit/CMakeLists.txt9d48f4f28f9588ccec5dde5656464473693520e51545788685000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed a bug in CMakeLists: use of out-of-scope variable 2018-12-25 20:44:45 -05009d48f4f28f9588ccec5dde5656464473693520e5Fixed a bug in CMakeLists: use of out-of-scope variableedittest/unit/CMakeLists.txttest/unit/CMakeLists.txttest/system/CMakeLists.txt42cda813f6576e06032a1f43a01562d2bdd496731545789910000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed a bug in cmake files that only appear when building with Xcode 2018-12-25 21:05:10 -050042cda813f6576e06032a1f43a01562d2bdd49673Fixed a bug in cmake files that only appear when building with Xcodeedittest/system/CMakeLists.txtedittest/unit/CMakeLists.txttest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBLUniField_Panel_btest_outdated.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HubtraceHDGAdvIBL_CutCellForcedTransition_Panel_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HDGAdvIBL_Panel_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HubtraceHDGAdvIBL_CutCellNaturalTransition_Panel_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBLUniField_Panel_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block2x2_DGBR2_Line_Euler1DSensor_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBLUniField_Panel_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_IBL_Panel_btest.cppsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective.htest/unit/Discretization/jacobianPingTest_btest.htest/unit/Discretization/Block/AlgebraicEquationSet_Block2x2_DGBR2_BuckleyLeverett_ArtificialViscosity_ST_btest.cppsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_CutcellTransitionIBL.hsrc/PanelMethod/AlgebraicEquationSet_ProjectToQauxi.hsrc/Discretization/Galerkin/IntegrandCell_ProjectFunction.hsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.htest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBL_Panel_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBL_Panel_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBLUniField_Panel_btest_outdated.cpp3ceb0ffa36d94c5ae762af647ec016968d5384b61545834732000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactored ping test input array type. Fixed IBL-related 4x4 block system ping tests. Added missing MPI-related method definitions for pure virtural methods 2018-12-26 09:32:12 -05003ceb0ffa36d94c5ae762af647ec016968d5384b6Refactored ping test input array type. Fixed IBL-related 4x4 block system ping tests. Added missing MPI-related method definitions for pure virtural methodsaddtest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBLUniField_Panel_btest_outdated.cppdeletetest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBLUniField_Panel_btest.cppeditsrc/PanelMethod/AlgebraicEquationSet_ProjectToQauxi.haddtest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBLUniField_Panel_btest_outdated.cppedittest/unit/Discretization/jacobianPingTest_btest.heditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective.heditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_CutcellTransitionIBL.hedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HubtraceHDGAdvIBL_CutCellNaturalTransition_Panel_btest.cppdeletetest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HubtraceHDGAdvIBL_CutCellForcedTransition_Panel_btest.cppedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBL_Panel_btest.cppedittest/unit/Discretization/Block/AlgebraicEquationSet_Block2x2_DGBR2_BuckleyLeverett_ArtificialViscosity_ST_btest.cppedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBL_Panel_btest.cppeditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.hdeletetest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBLUniField_Panel_btest.cppedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_IBL_Panel_btest.cppedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HDGAdvIBL_Panel_btest.cppeditsrc/Discretization/Galerkin/IntegrandCell_ProjectFunction.hedittest/unit/Discretization/Block/AlgebraicEquationSet_Block2x2_DGBR2_Line_Euler1DSensor_btest.cppsrc/Discretization/Galerkin/ResidualInteriorTrace_Galerkin.hsrc/Discretization/Galerkin/JacobianInteriorTrace_Galerkin.h5f47933a74ebc48d7772f65f48824b1a06c536b41545838636000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRelocated code into SANS_MPI macros; otherwise, errors are raised about "member access to incomplete type" 2018-12-26 10:37:16 -05005f47933a74ebc48d7772f65f48824b1a06c536b4Relocated code into SANS_MPI macros; otherwise, errors are raised about "member access to incomplete type"editsrc/Discretization/Galerkin/ResidualInteriorTrace_Galerkin.heditsrc/Discretization/Galerkin/JacobianInteriorTrace_Galerkin.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_CapturedTransition_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_TwoLayerNewton_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_LineSearchNewton_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_LamiBL_TurbWake_btest.cpp6f955a2bf09e65da97afa9a014a9a6c6b16b9aaf1545838645000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduVerified/fixed/cleaned IBL system tests with transition (full upwind). 2018-12-26 10:37:25 -05006f955a2bf09e65da97afa9a014a9a6c6b16b9aafVerified/fixed/cleaned IBL system tests with transition (full upwind).edittest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_LamiBL_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_LineSearchNewton_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_CapturedTransition_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_TwoLayerNewton_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cppdeletetest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cpptest/system/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_NACA0004_LamiBL_btest.cppbf73eea3a565ab536b7a78b891da74d01c3009871545839419000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed duplicate naming of boost test suite 2018-12-26 10:50:19 -0500bf73eea3a565ab536b7a78b891da74d01c300987Fixed duplicate naming of boost test suiteedittest/system/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_NACA0004_LamiBL_btest.cpptest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBLUniField_NACA0004_LamiBL_btest.cpp30ff2a7f74a2eb5613af7b59a680df831bf6bed11545839435000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRelaxed pyrite tolerance 2018-12-26 10:50:35 -050030ff2a7f74a2eb5613af7b59a680df831bf6bed1Relaxed pyrite toleranceedittest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBLUniField_NACA0004_LamiBL_btest.cpptest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_forcedTransition0p8074822_naca0004_ne64_p1_Test_FittedTransition_FullUpwind.txttest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_forcedTransition0p8074822_naca0004_ne64_p1_Test_FittedTransition_LFflux.txt73324348ac28811dd98985b73428472ff648df5d1545840280000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduUpdated forced-transition pyrite files after the bug fix in commit b30121ee5531d91e84aac94fbdab6462f458f4f8 2018-12-26 11:04:40 -050073324348ac28811dd98985b73428472ff648df5dUpdated forced-transition pyrite files after the bug fix in commit b30121ee5531d91e84aac94fbdab6462f458f4f8edittest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_forcedTransition0p8074822_naca0004_ne64_p1_Test_FittedTransition_LFflux.txtedittest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_forcedTransition0p8074822_naca0004_ne64_p1_Test_FittedTransition_FullUpwind.txttest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_Forced_btest.cpp04ddf23776dadc4d60018ffbd0d85a3fc18a96df1545840476000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduTurned off file dump 2018-12-26 11:07:56 -050004ddf23776dadc4d60018ffbd0d85a3fc18a96dfTurned off file dumpedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_Forced_btest.cpptest/fenv.h8864949c7bdd7c06387f59cfc8338e1dfbc696111545841092000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed formatting 2018-12-26 11:18:12 -05008864949c7bdd7c06387f59cfc8338e1dfbc69611Fixed formattingedittest/fenv.htest/unit/pde/IBL/VarInterpret2D_btest.cpp4cb6955b8412155b3ca9758e32b1e8a7eb580b091545841258000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed empty traling line 2018-12-26 11:20:58 -05004cb6955b8412155b3ca9758e32b1e8a7eb580b09Fixed empty traling lineedittest/unit/pde/IBL/VarInterpret2D_btest.cpptest/unit/Discretization/HDG/AlgebraicEquationSet_Hubtrace_HDGAdvective_IBL_btest.cpptest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Line_IBL_airfoilOnly_btest.cpptest/unit/Discretization/DG/AlgebraicEquationSet_DGAdvective_Line_IBL_airfoilOnly_btest.cppd957824748b219044bcbf86fb11d5361429d96e51545879904000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed DG and HDG AES tests for uncoupled IBL 2018-12-26 22:05:04 -0500d957824748b219044bcbf86fb11d5361429d96e5Fixed DG and HDG AES tests for uncoupled IBLedittest/unit/Discretization/HDG/AlgebraicEquationSet_Hubtrace_HDGAdvective_IBL_btest.cppedittest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Line_IBL_airfoilOnly_btest.cppedittest/unit/Discretization/DG/AlgebraicEquationSet_DGAdvective_Line_IBL_airfoilOnly_btest.cpptest/unit/Discretization/HDG/AlgebraicEquationSet_Hubtrace_HDGAdvective_IBL_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBL_Panel_btest.cppdb93e2afaf214cb09d0780085ca85a56fd3908641545882098000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed formatting 2018-12-26 22:41:38 -0500db93e2afaf214cb09d0780085ca85a56fd390864Fixed formattingedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBL_Panel_btest.cppedittest/unit/Discretization/HDG/AlgebraicEquationSet_Hubtrace_HDGAdvective_IBL_btest.cppsrc/Discretization/HDG/JacobianBoundaryTrace_Dispatch_HDG.hsrc/Discretization/HDG/JacobianBoundaryCell_HDG_AuxiliaryVariable.hsrc/Discretization/HDG/ResidualCell_HDG.hsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.hsrc/Discretization/HDG/ResidualBoundaryTrace_Dispatch_HDG.hsrc/Discretization/HDG/JacobianBoundaryTrace_HDG.h4d98a015d00f4d1162069ac9a1373ec69c3ee1491545883572000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduReverted changes to (viscous) HDG stuff: those abandoned changes treated qfld and afld as a single bundle field 2018-12-26 23:06:12 -05004d98a015d00f4d1162069ac9a1373ec69c3ee149Reverted changes to (viscous) HDG stuff: those abandoned changes treated qfld and afld as a single bundle fieldeditsrc/Discretization/HDG/ResidualBoundaryTrace_Dispatch_HDG.heditsrc/Discretization/HDG/JacobianBoundaryCell_HDG_AuxiliaryVariable.heditsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.heditsrc/Discretization/HDG/JacobianBoundaryTrace_HDG.heditsrc/Discretization/HDG/ResidualCell_HDG.heditsrc/Discretization/HDG/JacobianBoundaryTrace_Dispatch_HDG.htest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Advection_btest.cpp36a3e1f8db4e549550e452abbb2ca79da1a877181545884077000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduUpdate AlgebraicEquationSet_HDGAdvective_Advection_btest.cpp Turned off the test temporarily --> to be fixed 2018-12-26 23:14:37 -050036a3e1f8db4e549550e452abbb2ca79da1a87718Update AlgebraicEquationSet_HDGAdvective_Advection_btest.cppedittest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Advection_btest.cpptest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Advection_btest.cpptest/unit/PanelMethod/XfoilPanelEquationSet_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_IBL_Panel_btest.cpp59299dfacae8206bd678093b49e044f678a7979e1545885250000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed one more test affected by ping test refactoring. Fixed formatting and screen output 2018-12-26 23:34:10 -050059299dfacae8206bd678093b49e044f678a7979eFixed one more test affected by ping test refactoring. Fixed formatting and screen outputedittest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Advection_btest.cppedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_IBL_Panel_btest.cppedittest/unit/PanelMethod/XfoilPanelEquationSet_btest.cpptest/system/AnalyticSolve/AnalyticSolve2D_DGAdvective_IBL_StagnationFlow_LamiBL_btest.cppc3d00dbc9f97bd67f799829566cb53feb0305d6e1545885746000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed another system test affected by IBL Qauxv interpreter refactoring 2018-12-26 23:42:26 -0500c3d00dbc9f97bd67f799829566cb53feb0305d6eFixed another system test affected by IBL Qauxv interpreter refactoringedittest/system/AnalyticSolve/AnalyticSolve2D_DGAdvective_IBL_StagnationFlow_LamiBL_btest.cpptest/system/Asymptotic/ErrorOrder_1D_HDGAdvective_Advection_btest.cpp5983e3e32ac3382601f0aba1855f483e276496821545886794000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduUpdate ErrorOrder_1D_HDGAdvective_Advection_btest.cpp Turned off a system test temporarily --> to be fixed later 2018-12-26 23:59:54 -05005983e3e32ac3382601f0aba1855f483e27649682Update ErrorOrder_1D_HDGAdvective_Advection_btest.cppedittest/system/Asymptotic/ErrorOrder_1D_HDGAdvective_Advection_btest.cppsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_4x4_Instantiate.cppsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.h288727892baa3434a7d6c086acee806dd843433e1545923734000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed warning and missing instantiation 2018-12-27 10:15:34 -0500288727892baa3434a7d6c086acee806dd843433eFixed warning and missing instantiationeditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_4x4_Instantiate.cppeditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_4x4_Instantiate.cpp3d336240b1c63c1abfe72a21d38fa09b27ffd4df1545924344000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded an instantiation just for completeness, although it is no longer used 2018-12-27 10:25:44 -05003d336240b1c63c1abfe72a21d38fa09b27ffd4dfAdded an instantiation just for completeness, although it is no longer usededitsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_4x4_Instantiate.cpptest/sandbox/Solve2D_Uncoupled_DGAdvective_IBL_toy.cpptest/sandbox/Solve2D_Uncoupled_DGAdvective_IBL_p0_toy.cpp810f4bd4fad8ba3b2de969746989dcb0c782a0291545925229000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduCleaned sandbox cases 2018-12-27 10:40:29 -0500810f4bd4fad8ba3b2de969746989dcb0c782a029Cleaned sandbox casesdeletetest/sandbox/Solve2D_Uncoupled_DGAdvective_IBL_p0_toy.cppedittest/sandbox/Solve2D_Uncoupled_DGAdvective_IBL_toy.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HDGAdvIBL_Panel_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_IBL_Panel_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HubtraceHDGAdvIBL_CutCellNaturalTransition_Panel_btest.cpp693f26495b03afc1b18c756d3bd2835671784de61545926367000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edurelaxed tolerances for clang_release 2018-12-27 10:59:27 -0500693f26495b03afc1b18c756d3bd2835671784de6relaxed tolerances for clang_releaseedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_IBL_Panel_btest.cppedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HDGAdvIBL_Panel_btest.cppedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HubtraceHDGAdvIBL_CutCellNaturalTransition_Panel_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_LineSearchNewton_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_TwoLayerNewton_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_CapturedTransition_btest.cppbfb46a16cecaf81ff2fb2e4cd48e091a5c1a76e11545927204000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduSuppressed output 2018-12-27 11:13:24 -0500bfb46a16cecaf81ff2fb2e4cd48e091a5c1a76e1Suppressed outputedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_TwoLayerNewton_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_CapturedTransition_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_LineSearchNewton_btest.cpptest/unit/Discretization/HDG/CMakeLists.txttest/unit/Discretization/Block/CMakeLists.txttest/system/Asymptotic/CMakeLists.txt3e943c62719235ebaa82229cc6537c9839401d451545927356000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed bugs in CMakeLists 2018-12-27 11:15:56 -05003e943c62719235ebaa82229cc6537c9839401d45Fixed bugs in CMakeListsedittest/unit/Discretization/HDG/CMakeLists.txtedittest/system/Asymptotic/CMakeLists.txtedittest/unit/Discretization/Block/CMakeLists.txttest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Advection_btest.cpptest/system/Asymptotic/ErrorOrder_1D_HDGAdvective_Advection_btest.cppa3db76862e142fbfa249a204b687efa3d229fc361545931897000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed HDG advection tests 2018-12-27 12:31:37 -0500a3db76862e142fbfa249a204b687efa3d229fc36Fixed HDG advection testsedittest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Advection_btest.cppedittest/system/Asymptotic/ErrorOrder_1D_HDGAdvective_Advection_btest.cpptest/system/Asymptotic/ErrorOrder_1D_HDG_Advection_btest.cpp73cee225c44a45f7a8cbeddffaf303e6e4023b131545932997000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRemoved the pure advection test case using (viscous) HDG machinery 2018-12-27 12:49:57 -050073cee225c44a45f7a8cbeddffaf303e6e4023b13Removed the pure advection test case using (viscous) HDG machinerydeletetest/system/Asymptotic/ErrorOrder_1D_HDG_Advection_btest.cppsrc/NonLinearSolver/LineUpdate/HalvingSearchLineUpdate_impl.htest/unit/NonLinearSolver/HalvingSearchLineUpdate_btest.cppsrc/NonLinearSolver/LineUpdate/HalvingSearchLineUpdate.hc79c753eb1196f7cece2d8a5a137aa1d94aaf2601545952199000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactored halving line search and fixed unit tests 2018-12-27 18:09:59 -0500c79c753eb1196f7cece2d8a5a137aa1d94aaf260Refactored halving line search and fixed unit testsedittest/unit/NonLinearSolver/HalvingSearchLineUpdate_btest.cppeditsrc/NonLinearSolver/LineUpdate/HalvingSearchLineUpdate_impl.heditsrc/NonLinearSolver/LineUpdate/HalvingSearchLineUpdate.htest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Line_IBL_airfoilOnly_btest.cpptest/unit/Discretization/DG/AlgebraicEquationSet_DGAdvective_Line_IBL_airfoilOnly_btest.cpp9f119a3a5484cd20e84d16c9685408bb3495574c1545957324000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed memory errors 2018-12-27 19:35:24 -05009f119a3a5484cd20e84d16c9685408bb3495574cFixed memory errorsedittest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Line_IBL_airfoilOnly_btest.cppedittest/unit/Discretization/DG/AlgebraicEquationSet_DGAdvective_Line_IBL_airfoilOnly_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBL_Panel_btest.cppdb0e0087b5b20c735b48920da1981346dfaa6da31545967356000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRelaxed tolerance for intel 2018-12-27 22:22:36 -0500db0e0087b5b20c735b48920da1981346dfaa6da3Relaxed tolerance for inteledittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBL_Panel_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_LineSearchNewton_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_TwoLayerNewton_btest.cpp9a0e84b33bed1ea04b9517a56ee85031d68b82e31545967863000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edurelaxed tolerances for intel18 2018-12-27 22:31:03 -05009a0e84b33bed1ea04b9517a56ee85031d68b82e3relaxed tolerances for intel18edittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_LineSearchNewton_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_TwoLayerNewton_btest.cpptest/unit/Discretization/Block/CMakeLists.txt13682181d4f33448762376a4af330f5f38efc1dc1545999137000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRelaxed timeout limits 2018-12-28 07:12:17 -050013682181d4f33448762376a4af330f5f38efc1dcRelaxed timeout limitsedittest/unit/Discretization/Block/CMakeLists.txttest/unit/Discretization/Block/CMakeLists.txttest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HubtraceHDGAdvIBL_CutCellNaturalTransition_Panel_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBL_Panel_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBL_Panel_btest.cpp7ef42f4e8a6894b24eb24a580214d393f13ed7e11546006092000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduSpeed up unit tests in response to Jenkins timeout 2018-12-28 09:08:12 -05007ef42f4e8a6894b24eb24a580214d393f13ed7e1Speed up unit tests in response to Jenkins timeoutedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HubtraceHDGAdvIBL_CutCellNaturalTransition_Panel_btest.cppedittest/unit/Discretization/Block/CMakeLists.txtedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBL_Panel_btest.cppedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBL_Panel_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HubtraceHDGAdvIBL_CutCellNaturalTransition_Panel_btest.cppfe8e917382161cd95cf8b25bd7321820d977ef0f1546006596000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed typo 2018-12-28 09:16:36 -0500fe8e917382161cd95cf8b25bd7321820d977ef0fFixed typoedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HubtraceHDGAdvIBL_CutCellNaturalTransition_Panel_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBL_Panel_btest.cppc0ad37a4a0f9dca2fa9fcb1467b2ab3f281401b51546010032000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRelaxed tolerance for gnu48 2018-12-28 10:13:52 -0500c0ad37a4a0f9dca2fa9fcb1467b2ab3f281401b5Relaxed tolerance for gnu48edittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBL_Panel_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HDGAdvIBL_Panel_btest.cpptest/unit/Discretization/Block/CMakeLists.txttest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_IBL_Panel_btest.cppb454405f165d71f3f6148314406b6c91d5a892a21546018193000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduTried to fix timeout on Jenkins testing (coverage_clang reynolds) 2018-12-28 12:29:53 -0500b454405f165d71f3f6148314406b6c91d5a892a2Tried to fix timeout on Jenkins testing (coverage_clang reynolds)edittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HDGAdvIBL_Panel_btest.cppedittest/unit/Discretization/Block/CMakeLists.txtedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_IBL_Panel_btest.cpptest/unit/Discretization/HDG/CMakeLists.txttest/unit/Discretization/Block/CMakeLists.txttest/system/Asymptotic/CMakeLists.txt028c9f2d90e4cf8c4f213f0f2239eaa96919bd491546026601000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduReverted CMakeLists to see if TIMEOUT is set properly this time on Jenkins 2018-12-28 14:50:01 -0500028c9f2d90e4cf8c4f213f0f2239eaa96919bd49Reverted CMakeLists to see if TIMEOUT is set properly this time on Jenkinsedittest/system/Asymptotic/CMakeLists.txtedittest/unit/Discretization/Block/CMakeLists.txtedittest/unit/Discretization/HDG/CMakeLists.txtsrc/Discretization/Galerkin/ResidualBoundaryTrace_mitLG_Galerkin.hsrc/Discretization/HDG/ResidualBoundaryTrace_HDGAdvective.hsrc/Discretization/Galerkin/ResidualBoundaryTrace_Dirichlet_mitLG_Galerkin.h0f6ac1e43ac20770efc8b0a2a3e9c15d5b2f00e01546038469000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduminor refactoring 2018-12-28 18:07:49 -05000f6ac1e43ac20770efc8b0a2a3e9c15d5b2f00e0minor refactoringeditsrc/Discretization/HDG/ResidualBoundaryTrace_HDGAdvective.heditsrc/Discretization/Galerkin/ResidualBoundaryTrace_mitLG_Galerkin.heditsrc/Discretization/Galerkin/ResidualBoundaryTrace_Dirichlet_mitLG_Galerkin.htest/unit/Discretization/HDG/CMakeLists.txttest/unit/Discretization/Block/CMakeLists.txttest/system/Asymptotic/CMakeLists.txte5643bf0daeea303cf0afd498d98cd98b189dabc1546039256000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactored CMakeLists for Xcode build 2018-12-28 18:20:56 -0500e5643bf0daeea303cf0afd498d98cd98b189dabcRefactored CMakeLists for Xcode buildedittest/system/Asymptotic/CMakeLists.txtedittest/unit/Discretization/HDG/CMakeLists.txtedittest/unit/Discretization/Block/CMakeLists.txtsrc/NonLinearSolver/NewtonSolver_impl.hdf67e96aa82129a4f4a224ebdba2f3cde50b50291546055663000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactored Newton solver 2018-12-28 22:54:23 -0500df67e96aa82129a4f4a224ebdba2f3cde50b5029Refactored Newton solvereditsrc/NonLinearSolver/NewtonSolver_impl.hsrc/NonLinearSolver/NewtonSolver_impl.h1b21c1a1154b21c7bb6ce9f4790bd0480327c66c1546089150000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduMinor fix 2018-12-29 08:12:30 -05001b21c1a1154b21c7bb6ce9f4790bd0480327c66cMinor fixeditsrc/NonLinearSolver/NewtonSolver_impl.hsrc/NonLinearSolver/NewtonSolver_impl.h4951cb72814beec785f16bdd6f0573ceea50d7531546091998000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed warnings 2018-12-29 08:59:58 -05004951cb72814beec785f16bdd6f0573ceea50d753Fixed warningseditsrc/NonLinearSolver/NewtonSolver_impl.hsrc/pde/IBL/PDEIBL2D.htest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_NACA0004_LamiBL_btest.cppsrc/Discretization/UpdateFraction/UpdateFractionCell.h6ae5fee7aa15a8db9e4c10b922acdf0cb758a3231546137799000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded IBL max update fraction 2018-12-29 21:43:19 -05006ae5fee7aa15a8db9e4c10b922acdf0cb758a323Added IBL max update fractioneditsrc/pde/IBL/PDEIBL2D.hedittest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_NACA0004_LamiBL_btest.cppeditsrc/Discretization/UpdateFraction/UpdateFractionCell.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Project.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_TwoLayerNewton_btest.cppsrc/Discretization/DG/AlgebraicEquationSet_TransitionIBL.hsrc/Discretization/Block/AlgebraicEquationSet_Block4x4_impl.hsrc/Discretization/Block/AlgebraicEquationSet_Block4x4.hsrc/PanelMethod/XfoilPanelEquationSet.hsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective_impl.h2865578197ac529142b3f028ecce255f490ac6991546204535000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduEnabled under-relaxed Newton update for coupled 4x4 block system of IBL with free transition. Added updateFraction to AES of projection, panel method, cut-cell transition IBL, and 4x4 block system 2018-12-30 16:15:35 -05002865578197ac529142b3f028ecce255f490ac699Enabled under-relaxed Newton update for coupled 4x4 block system of IBL with free transition.editsrc/Discretization/Block/AlgebraicEquationSet_Block4x4.heditsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective_impl.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Project.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_TwoLayerNewton_btest.cppeditsrc/Discretization/Block/AlgebraicEquationSet_Block4x4_impl.heditsrc/Discretization/DG/AlgebraicEquationSet_TransitionIBL.heditsrc/PanelMethod/XfoilPanelEquationSet.hsrc/Meshing/EGTess/XFieldDomain_impl.hCMakeInclude/Checks/CheckAVRO.cmakesrc/Field/XField.hsrc/Meshing/EGADS/EGModel.hCMakeInclude/Builds/BuildREFINE.cmaketest/unit/UnitGrids/CMakeLists.txttest/system/Asymptotic/Adjoint2D_DGBR2_Triangle_AD_btest.cpptest/sandbox/Adapt3D_Mesh_Optimizer_toy.cpptest/unit/Meshing/avro/XField_avro_btest.cppCMakeInclude/Builds/BuildPARMETIS.cmaketest/sandbox/Adapt2D_Mesh_Optimizer_toy.cppsrc/Meshing/avro/XField_avro.cpptest/sandbox/Adapt3D_CG_AD_L2_MOESS_toy.cppsrc/Meshing/avro/MesherInterface_avro.cppsrc/Meshing/EGTess/XFieldDomain.cpptest/unit/Meshing/EGTess/XFieldDomain_btest.cpptest/sandbox/Adapt3D_DGBR2_AD_HemisphereCylinder_toy.cpptest/unit/Meshing/avro/MesherInterface_avro_btest.cppCMakeInclude/Builds/BuildAVRO.cmakesrc/Meshing/EGTess/XFieldDomain.hsrc/Meshing/avro/MesherInterface_avro.htest/sandbox/Adapt3D_CG_AD_L2_MultiScale_toy.cpptest/sandbox/Adapt3D_L2Project_MOESS_toy.cppsrc/Meshing/EGADS/EGModel.cpptest/sandbox/Adapt3D_DG_AD_L2_MOESS_toy.cpptest/sandbox/CMakeLists.txttest/system/CMakeLists.txtsrc/Adaptation/MeshAdapter.cppsrc/Adaptation/MeshAdapter.hCMakeInclude/HeaderCompileCheck.cmaketest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cpptest/unit/CMakeLists.txtsrc/Meshing/avro/XField_avro_impl.hsrc/Meshing/avro/XField_avro.hsrc/Adaptation/callMesher2D.cppsrc/Adaptation/callMesher.hsrc/Meshing/EGTess/CMakeLists.txttest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppCMakeInclude/Builds/parmetis-CMakeLists.patchsrc/Adaptation/callMesher3D.cpptest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_avro_toy.cpptest/sandbox/Adapt4D_Mesh_Optimizer_toy.cppsrc/Meshing/avro/CMakeLists.txtCMakeInclude/Dependencies.cmaketest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppCMakeInclude/Finds/FindAVRO.cmaked8e0ba9b657ce92ef6657ef8d812d52a6884434e1546224180000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduRefactor of avro XField interface 2018-12-30 21:43:00 -0500d8e0ba9b657ce92ef6657ef8d812d52a6884434eRefactor of avro XField interfaceaddsrc/Meshing/avro/XField_avro.cppedittest/sandbox/Adapt3D_CG_AD_L2_MOESS_toy.cppedittest/system/CMakeLists.txteditCMakeInclude/Dependencies.cmakeedittest/sandbox/Adapt3D_CG_AD_L2_MultiScale_toy.cppedittest/sandbox/CMakeLists.txtdeletesrc/Meshing/EGTess/XFieldDomain.hdeletetest/unit/Meshing/EGTess/XFieldDomain_btest.cppeditCMakeInclude/Checks/CheckAVRO.cmakeeditsrc/Meshing/EGADS/EGModel.cppdeletesrc/Meshing/EGTess/XFieldDomain_impl.hedittest/sandbox/Adapt3D_DG_AD_L2_MOESS_toy.cppedittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppedittest/sandbox/Adapt2D_Mesh_Optimizer_toy.cppedittest/sandbox/Adapt3D_L2Project_MOESS_toy.cppeditsrc/Adaptation/callMesher2D.cppedittest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_avro_toy.cppeditsrc/Field/XField.hedittest/sandbox/Adapt3D_DGBR2_AD_HemisphereCylinder_toy.cppeditsrc/Adaptation/MeshAdapter.cppeditsrc/Adaptation/callMesher.hedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppeditsrc/Adaptation/callMesher3D.cppedittest/unit/CMakeLists.txteditsrc/Meshing/avro/MesherInterface_avro.haddtest/unit/Meshing/avro/XField_avro_btest.cppeditCMakeInclude/Builds/parmetis-CMakeLists.patcheditCMakeInclude/Finds/FindAVRO.cmakeeditsrc/Meshing/EGADS/EGModel.heditsrc/Meshing/EGTess/CMakeLists.txtedittest/unit/UnitGrids/CMakeLists.txtaddsrc/Meshing/avro/XField_avro.hedittest/sandbox/Adapt4D_Mesh_Optimizer_toy.cppeditsrc/Meshing/avro/MesherInterface_avro.cppedittest/system/Asymptotic/Adjoint2D_DGBR2_Triangle_AD_btest.cppedittest/unit/Meshing/avro/MesherInterface_avro_btest.cppaddsrc/Meshing/avro/XField_avro_impl.hdeletesrc/Meshing/EGTess/XFieldDomain.cppeditsrc/Meshing/avro/CMakeLists.txtedittest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppeditCMakeInclude/Builds/BuildPARMETIS.cmakeeditsrc/Adaptation/MeshAdapter.heditCMakeInclude/Builds/BuildREFINE.cmakeeditCMakeInclude/HeaderCompileCheck.cmakeeditCMakeInclude/Builds/BuildAVRO.cmakeedittest/sandbox/Adapt3D_Mesh_Optimizer_toy.cpptest/unit/Discretization/HDG/CMakeLists.txttest/unit/Discretization/Block/CMakeLists.txttest/system/Asymptotic/CMakeLists.txttest/system/LocalSolve/CMakeLists.txttest/unit/Field/Element/CMakeLists.txt8fc4192886845179ab68e01014574a54edddce6b1546224891000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduConsistent logic for setting cmake testing timout property 2018-12-30 21:54:51 -05008fc4192886845179ab68e01014574a54edddce6bConsistent logic for setting cmake testing timout propertyedittest/system/LocalSolve/CMakeLists.txtedittest/unit/Discretization/Block/CMakeLists.txtedittest/system/Asymptotic/CMakeLists.txtedittest/unit/Discretization/HDG/CMakeLists.txtedittest/unit/Field/Element/CMakeLists.txtsrc/Meshing/refine/MesherInterface_refine.cppCMakeInclude/Builds/BuildAVRO.cmakef8772613190382ad6dbc45cf4814c43e38c1108c1546228191000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed refine interface change 2018-12-30 22:49:51 -0500f8772613190382ad6dbc45cf4814c43e38c1108cFixed refine interface changeeditsrc/Meshing/refine/MesherInterface_refine.cppeditCMakeInclude/Builds/BuildAVRO.cmakesrc/Adaptation/MOESS/NodalMetrics.hsrc/Meshing/avro/XField_avro.h5175b456d3332d294972fbcc4cddde64ea21f2601546267262000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix ifdef when not using avro 2018-12-31 09:41:02 -05005175b456d3332d294972fbcc4cddde64ea21f260Fix ifdef when not using avroeditsrc/Adaptation/MOESS/NodalMetrics.heditsrc/Meshing/avro/XField_avro.hsrc/Meshing/avro/XField_avro_impl.hCMakeInclude/Builds/BuildAVRO.cmakeCMakeInclude/Dependencies.cmakeCMakeInclude/Finds/FindAVRO.cmakeCMakeInclude/SANScotire.cmakesrc/Meshing/avro/XField_avro.cpp235be4ecf04f93d7b6a1ccb5234bd7f44f9646891546273930000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMore fixes to deal with avro 2018-12-31 11:32:10 -0500235be4ecf04f93d7b6a1ccb5234bd7f44f964689More fixes to deal with avroeditsrc/Meshing/avro/XField_avro_impl.heditsrc/Meshing/avro/XField_avro.cppeditCMakeInclude/Builds/BuildAVRO.cmakeeditCMakeInclude/Dependencies.cmakeeditCMakeInclude/Finds/FindAVRO.cmakeeditCMakeInclude/SANScotire.cmakeCMakeInclude/Checks/CheckAVRO.cmakea80311be6ec378d24095df115131f9553b6bf6f01546274163000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMinor cleanup 2018-12-31 11:36:03 -0500a80311be6ec378d24095df115131f9553b6bf6f0Minor cleanupeditCMakeInclude/Checks/CheckAVRO.cmaketest/unit/pde/IBL/PDEIBL2D_btest.cppsrc/pde/IBL/PDEIBL2D.ha8a52c39337e1e83f592964ec30f622936f972651546274322000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded unit tests for IBL updateFraction 2018-12-31 11:38:42 -0500a8a52c39337e1e83f592964ec30f622936f97265Added unit tests for IBL updateFractioneditsrc/pde/IBL/PDEIBL2D.hedittest/unit/pde/IBL/PDEIBL2D_btest.cppscripts/jenkins/jenkins_env.shCMakeInclude/Builds/BuildPETSC.cmakescripts/jenkins/SANS_Depend.sh9a95acc98a8b50f01cdb7cf57f537931a1f738f11546280841000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpgrade PETSc 2018-12-31 13:27:21 -05009a95acc98a8b50f01cdb7cf57f537931a1f738f1Upgrade PETSceditscripts/jenkins/jenkins_env.sheditCMakeInclude/Builds/BuildPETSC.cmakeeditscripts/jenkins/SANS_Depend.shsrc/Meshing/avro/MesherInterface_avro.cppCMakeInclude/Builds/BuildAVRO.cmakesrc/Meshing/avro/CMakeLists.txtCMakeInclude/Builds/BuildPETSC.cmakeCMakeInclude/Finds/FindAVRO.cmake6ea45e876dcfa9a4caf06bad27702d9c3958342e1546299281000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMore avro and PETSc tweaks 2018-12-31 18:34:41 -05006ea45e876dcfa9a4caf06bad27702d9c3958342eMore avro and PETSc tweakseditCMakeInclude/Finds/FindAVRO.cmakeeditCMakeInclude/Builds/BuildPETSC.cmakeeditsrc/Meshing/avro/MesherInterface_avro.cppeditCMakeInclude/Builds/BuildAVRO.cmakeeditsrc/Meshing/avro/CMakeLists.txtsrc/Meshing/avro/CMakeLists.txtd578c14434377dd66a6c94f052f61917d356a5f01546310340000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduI don't understand why dl library is needed to link a static library... 2018-12-31 21:39:00 -0500d578c14434377dd66a6c94f052f61917d356a5f0I don't understand why dl library is needed to link a static library...editsrc/Meshing/avro/CMakeLists.txtCMakeInclude/Checks/ref_check.c6d47a03dcde3c646b91bfbfa0761e8097d32735f1546355557000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix for refine check 2019-01-01 10:12:37 -05006d47a03dcde3c646b91bfbfa0761e8097d32735fFix for refine checkeditCMakeInclude/Checks/ref_check.cCMakeInclude/Builds/BuildPETSC.cmakea1ca0e5a148ef103373a17c6d415ab11c76a61081546361324000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduSuppress compiler warning when building PETSc 2019-01-01 11:48:44 -0500a1ca0e5a148ef103373a17c6d415ab11c76a6108Suppress compiler warning when building PETSceditCMakeInclude/Builds/BuildPETSC.cmakesrc/Meshing/avro/XField_avro_impl.hsrc/Field/Partition/XField_Lagrange_ParMetis_impl.hCMakeInclude/Builds/BuildPETSC.cmakescripts/jenkins/SANS_Depend.sh28a289a2790fd48abe2753668368327ea24aebec1546444331000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix for avro with 4D 2019-01-02 10:52:11 -050028a289a2790fd48abe2753668368327ea24aebecFix for avro with 4Deditsrc/Field/Partition/XField_Lagrange_ParMetis_impl.heditsrc/Meshing/avro/XField_avro_impl.heditscripts/jenkins/SANS_Depend.sheditCMakeInclude/Builds/BuildPETSC.cmakescripts/jenkins/cmake_jenkins.shc6c3bf53113175b0e2094a95c9f5ff760a155b711546476246000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduEnable refine testing again 2019-01-02 19:44:06 -0500c6c3bf53113175b0e2094a95c9f5ff760a155b71Enable refine testing againeditscripts/jenkins/cmake_jenkins.shscripts/util/UpdateCopyright.she3bc4756b8e24566fff989637a0735319e23a4fc1546524160000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdated copyright date to 2019 2019-01-03 09:02:40 -0500e3bc4756b8e24566fff989637a0735319e23a4fcUpdated copyright date to 2019addscripts/util/UpdateCopyright.shsrc/Discretization/HDG/AWResidualCell_HDG.hsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_Sensor2D_AUSJump_Euler2D_Conservative.cppsrc/Field/FieldSpacetime_DG_Trace_impl.hsrc/ErrorEstimate/DG/ErrorEstimate_DGBR2.hsrc/Discretization/Galerkin/JacobianFunctionalBoundaryTrace_Galerkin.hsrc/Discretization/HDG/Instantiate/AlgebraicEquationSet_HDG_NavierStokes2D_Primitive_ConstantViscosity.cppsrc/ErrorEstimate/DistributeBoundaryTraceGroups.hsrc/Discretization/LIP_HACK/IntegrandInteriorTrace_Galerkin_WakeCut_LIP_SRA.hsrc/Field/FieldVolume_DG_Cell_impl.hsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_AdvectionDiffusion2D_AUDUSN.cppsrc/Field/Element/ElementXFieldArea.hsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_AdvectionDiffusion1D_AUDUSN.cppsrc/Field/FieldLine_DG_BoundaryTrace_Instantiate_2D.cppsrc/BasisFunction/BasisFunctionVolume_Tetrahedron_Legendre.hsrc/Field/FieldLine_CG_BoundaryTrace_impl.hsrc/Field/FieldData/FieldDataVectorD_BoundaryCell.hsrc/Field/FieldLine_DG_HubTrace_Instantiate_2D.cppsrc/Discretization/Galerkin/JacobianCell_Galerkin_CutCellTransitionIBLUniField.hsrc/BasisFunction/BasisFunctionLine.hsrc/Field/FieldAssociativity.hsrc/Field/FieldLine_CG_BoundaryTrace_Instantiate_1D.cppsrc/Field/FieldArea_CG_Cell_Instantiate_2D.cppsrc/BasisFunction/BasisFunctionVolume_Projection.hsrc/BasisFunction/BasisFunctionVolume_Tetrahedron_Lagrange.hsrc/Discretization/HDG/IntegrandBoundaryTrace_Flux_mitState_HDG.hsrc/Discretization/Galerkin/IntegrandBoundaryTrace_Dirichlet_sansLG_Galerkin_manifold.hsrc/Field/Field_NodalView_Spacetime.cppsrc/Discretization/HDG/ResidualBoundaryTrace_Dispatch_HDG.hsrc/BasisFunction/ReferenceElement.cppsrc/Discretization/HDG/IntegrandBoundaryTrace_HubTrace_HDGAdvective.hsrc/Discretization/DG/JacobianCell_DGBR2_Param.hsrc/Field/Field_CG_CellConstructor.hsrc/Field/FieldGroupVolume_Traits.hsrc/Field/Partition/XField_Lagrange_Distribute_impl.hsrc/Field/FieldVolume.hsrc/Discretization/DG/JacobianCell_DGBR2.hsrc/Field/DistanceFunction/DistanceFunction_KDVertex.hsrc/Field/FieldVolume_CG_Cell_impl.hsrc/Discretization/Galerkin/ResidualBoundaryTrace_Dirichlet_mitLG_Galerkin.hsrc/Field/FieldSpacetime_DG_Cell_Instantiate_4D.cppsrc/Field/Element/ElementAssociativityVolume.cppsrc/Discretization/Galerkin/JacobianBoundaryTrace_Galerkin.hsrc/Field/Field_CG_TraceConstructor.hsrc/BasisFunction/BasisFunctionVolume_Tetrahedron_Hierarchical.hsrc/Field/FieldLift_DG_CellBase_impl.hsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_ArtificialViscosity_TwoPhase2D.cppsrc/Field/FieldArea_DG_BoundaryTrace_Instantiate_2D.cppsrc/Field/FieldAssociatvitySequence.hsrc/Discretization/isValidState/isValidStateCell.hsrc/Discretization/Galerkin/FunctionalBoundaryTrace_Dispatch_Galerkin.hsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_Sensor2D_AUSJump_Euler1D_Conservative.cppsrc/Discretization/Block/AlgebraicEquationSet_Block2x2_Real_Real.cppsrc/BasisFunction/BasisFunctionArea_Quad.hsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_AdvectionDiffusion1D_AUDUSUG.cppsrc/Discretization/DG/MassMatInvResidualNorm.hsrc/Discretization/LIP_HACK/IntegrandFunctor_Galerkin_WakeCut_sansLG.hsrc/Discretization/DG/JacobianInteriorTrace_DGBR2_Param.hsrc/Discretization/DG/JacobianInteriorTrace_DGBR2_LiftedQuantity.hsrc/Discretization/DG/SetFieldBoundaryTrace_Dispatch_LiftingOperator.hsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_Sensor2D_AUSJump_Euler2D_Primitive.cppsrc/Field/Element/ElementAssociativityNode.hsrc/ErrorEstimate/Galerkin/ErrorEstimate_StrongForm_Galerkin.hsrc/Field/FieldLinesearch/FieldLinesearch_Volume.hsrc/ErrorEstimate/Galerkin/ErrorEstimateBoundaryTrace_Dispatch_Galerkin.hsrc/BasisFunction/BasisFunctionVolume_Tetrahedron_Hierarchical.cppsrc/Field/FieldData/FieldDataInvMassMatrix_Cell.cppsrc/Field/FieldLine_DG_InteriorTrace_Instantiate_2D.cppsrc/Discretization/DG/DGAdvective_Instantiate/AlgebraicEquationSet_DGAdvective_Euler1D_Conservative.cppsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_RANSSA2D_PrimitiveSutherland.cppsrc/Field/FieldBaseVolume_Instantiate.cppsrc/Adaptation/MOESS/CostModel_LogEuclidean.cppsrc/Discretization/HDG/IntegrandBoundaryTrace_Output_HDG.hsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_RANSSA_Source2D_PrimitiveConstVisc.cppsrc/BasisFunction/TraceToCellRefCoord_Tetrahedron.cppsrc/Field/FieldLine_DG_Trace_Instantiate_1D.cppsrc/Discretization/LIP_HACK/JacobianCell_Galerkin_Kutta.hsrc/BasisFunction/Quadrature_Cache.hsrc/Field/Element/ElementXFieldLine.hsrc/Discretization/HDG/JacobianFunctionalBoundaryTrace_Dispatch_HDG.hsrc/Discretization/HDG/JacobianBoundaryTrace_HDG.hsrc/Field/FieldLiftArea_DG_Cell_impl.hsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_NavierStokes2D_PrimitiveConstVisc.cppsrc/Field/Tuple/FieldAssociativityBaseTuple.hsrc/Field/FieldVolume_CG_Cell.hsrc/Field/Element/ElementXFieldSpacetime_impl.hsrc/Field/CountGhostNeighbors.hsrc/Field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ctive_Instantiate/AlgebraicEquationSet_DGAdvective_Euler3D_PrimitiveRhoPressure.cppsrc/Field/FieldArea_CG_Trace_impl.hsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_Euler1D_AV1D_Conservative.cppsrc/Field/Field_DG_HubTraceBase.hsrc/Discretization/DG/Integrand_DGBR2_fwd.hsrc/Field/FieldLinesearch/FieldLinesearchBase.hsrc/Discretization/HDG/AlgebraicEquationSet_Local_HDG.hsrc/Field/Element/BoundingBox.cppsrc/Discretization/DG/DGAdvective_Instantiate/AlgebraicEquationSet_DGAdvective_AdvectionDiffusion2D_Annulus_DNSN.cppsrc/Adaptation/MeshAdapter.hsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_RANSSA3D_SurrogateSutherland.cppsrc/Field/FieldLine_DG_HubTrace_impl.hsrc/Field/Element/ElementSequence.hsrc/Field/FieldLine_DG_Trace.hsrc/Adaptation/MOESS/SolverInterface_DGBR2_Block2x2.hsrc/Discretization/Potential_Drela/IntegrandBoundaryTrace_WakeCut_CG_FP_Drela.hsrc/Discretization/HDG/JacobianBoundaryTrace_Dispatch_HDG_AuxiliaryVariable.hsrc/Discretization/Block/AlgebraicEquationSet_Block2x2_VecS3_Real.cppsrc/Field/Element/ElementAssociativityLineConstructor.hsrc/Field/Function/FunctionIntegral.hsrc/Field/FieldSpacetime_DG_Trace.hsrc/Discretization/LIP_HACK/Nishida_Hack.hsrc/Discretization/Galerkin/JacobianCell_Galerkin_CutCellTransitionIBL.hsrc/Adaptation/MOESS/MOESS_CostModel.hsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_TwoPhase2D_LogpnSw.cppsrc/Discretization/Galerkin/IntegrandBoundaryTrace_LinearScalar_mitLG_Galerkin.hsrc/Discretization/HDG/Instantiate/AlgebraicEquationSet_HDG_Euler2D_PrimitiveRhoPressure.cppsrc/Discretization/Galerkin/IntegrandCell_Galerkin_CutCellTransitionIBL.hsrc/Discretization/isValidState/isValidStateBoundaryTrace_mitLG.hsrc/Field/FieldLiftGroupVolume_Traits.hsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.cppsrc/Field/Element/ElementAssociativityLine.cppsrc/Field/FieldLine.hsrc/Discretization/Galerkin/IntegrandBoundaryTrace_Dirichlet_mitLG_Galerkin.hsrc/BasisFunction/BasisFunctionArea_Triangle_Hierarchical.cppsrc/Field/FieldSpacetime_CG_Cell_impl.hsrc/BasisFunction/BasisFunctionVolume_Hexahedron_Legendre.cppsrc/Adaptation/MOESS/SolverInterface_L2Project.hsrc/Discretization/HDG/DiscretizationHDG.hsrc/Field/Element/ElementXFieldVolume.hsrc/Field/FieldArea_DG_Cell_Instantiate_2D.cppsrc/Field/ProjectSoln/PointwiseSolutionStorage.cppsrc/Field/FieldLiftGroupLine_Traits.hsrc/Adaptation/MOESS/ErrorModel_Elemental.cppsrc/Field/FieldLine_CG_Cell_Instantiate_1D.cppsrc/Adaptation/MOESS/SolverInterface_Galerkin.hsrc/Field/Element/ElementalMassMatrix.hsrc/Field/FieldLine_DG_HubTrace.hsrc/Discretization/Galerkin/JacobianCell_Galerkin.hsrc/Field/Element/ElementXFieldJacobianEquilateral.cppsrc/Field/Function/WeightedFunctionIntegral.hsrc/BasisFunction/BasisFunctionVolume_Hexahedron_RBS.hsrc/Discretization/DG/SetFieldInteriorTrace_DGBR2_AdjointLO.hsrc/Field/FieldArea_DG_BoundaryTrace_Instantiate_3D.cppsrc/Discretization/Block/JacobianParam_Decoupled.hsrc/BasisFunction/BasisFunction_RefElement_Split.cppsrc/BasisFunction/BasisFunctionLine_Lagrange.hsrc/Field/Element/ElementAssociativityVolume.hsrc/BasisFunction/TraceToCellRefCoord_Triangle.cppsrc/Discretization/Galerkin/IntegrandInteriorTrace_Galerkin_manifold.hsrc/Field/ProjectSoln/PointwiseSolutionStorage.hsrc/Field/Element/ElementAssociativitySpacetimeConstructor.cppsrc/Discretization/Galerkin/JacobianBoundaryTrace_mitLG_Galerkin.hsrc/BasisFunction/BasisFunctionLineBase.hsrc/Adaptation/MOESS/NLOPT/ImpliedMetric_Optimizer_NLOPT.hsrc/Field/Field_NodalView_Line.cppsrc/Discretization/DG/JacobianBoundaryTrace_DGBR2.hsrc/Discretization/LIP_HACK/JacobianBoundaryTrace_Galerkin_WakeCut_LIP.hsrc/Field/FieldLine_DG_Trace_Instantiate_2D.cppsrc/ErrorEstimate/Galerkin/ErrorEstimateCell_Galerkin.hsrc/Field/FieldData/FieldDataMatrixD_TraceLift.hsrc/Field/Element/ElementLift.hsrc/Field/Element/ElementXFieldLine_Instantiate_3Dand4D.cppsrc/Field/XFieldArea.hsrc/BasisFunction/BasisFunction_TraceOrientation.cppsrc/Discretization/HDG/ResidualBoundaryTrace_Dispatch_HDGAdvective.hsrc/ErrorEstimate/DG/ErrorEstimateBoundaryTrace_Dispatch_DGBR2.hsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_Sensor1D_AUSJump_AD.cppsrc/BasisFunction/BasisFunction_RefElement_Split_TraceToCell.hsrc/Discretization/Galerkin/JacobianCell_Galerkin_BDF.hsrc/BasisFunction/BasisFunctionLine_Projection.cppsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_NavierStokes2D_ConservativeConstVisc.cppsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cppsrc/Discretization/Block/AlgebraicEquationSet_Block4x4.hsrc/Discretization/DG/AlgebraicEquationSet_Local_DG_impl.hsrc/BasisFunction/BasisFunctionLine_Bernstein.cppsrc/Field/FieldLine_DG_BoundaryTrace.hsrc/Discretization/IntegrateBoundaryTraceGroups_HubTrace.hsrc/Adaptation/MOESS/ReferenceStepMatrix.hsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_AdvectionDiffusion2D_AUDUSUG.cppsrc/BasisFunction/BasisFunctionArea_Triangle_Lagrange.hsrc/Field/SpaceTypes.hsrc/Discretization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rorEstimateBoundaryTrace_Galerkin.hsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_TwoPhase2D.cppsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_BuckleyLeverett_AV1D.cppsrc/Adaptation/callMesher.hsrc/Discretization/JacobianParam_Local.hsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_AdvectionDiffusion2D_AUDUSUG.cppsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_ArtificialViscosity_BuckleyLeverett1D.cppsrc/Field/Element/ElementAssociativityNodeConstructor.hsrc/Field/FieldLine_DG_Cell_Instantiate_2D.cppsrc/Field/GroupElementType.hee51fd2e4c7c9f4a5cf4c3aeaa4d999c6b3b47ce1546524233000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdated copyright date to 2019 2019-01-03 09:03:53 -0500ee51fd2e4c7c9f4a5cf4c3aeaa4d999c6b3b47ceUpdated copyright date to 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local splits 2019-01-04 12:03:55 -05002b3f4d97f0044e3e8e8c1a7c53948c2660b60579dimension-independent local splitsedittest/unit/Field/Local/XField_LocalPatch_Pentatope_btest.cppedittest/unit/Field/Local/XField_LocalPatch_Triangle_btest.cppeditsrc/Field/Local/XField_LocalPatch.cppeditsrc/Field/Local/XField_LocalPatch.hedittest/unit/Field/Local/XField_LocalPatch_Tet_btest.cpptest/system/Timing/CMakeLists.txtsrc/Field/Element/ElementAssociativityVolumeConstructor.cpptest/unit/Field/Local/XField_LocalPatch_Tet_btest.cpptest/system/CMakeLists.txttest/system/Timing/XField_LocalSplit_Timing_btest.cppsrc/Field/XField_Local_Common.hsrc/Field/XField_ElementLocal_impl.hsrc/Field/Local/XField_LocalPatch.cpptest/unit/Field/Local/XField_LocalPatch_Pentatope_btest.cppc65b021b3a95e49207aeab067924aed173702a3e1546638240000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edutiming tests show dim-independent implementation on par with savithru's impl...tried to debug hugh's local xfield in primal mode but something is wrong...unit tests on the way 2019-01-04 16:44:00 -0500c65b021b3a95e49207aeab067924aed173702a3etiming tests show dim-independent implementation on par with savithru's impl...tried to debug hugh's local xfield in primal mode but something is wrong...unit tests on the wayedittest/unit/Field/Local/XField_LocalPatch_Tet_btest.cppedittest/unit/Field/Local/XField_LocalPatch_Pentatope_btest.cppeditsrc/Field/XField_Local_Common.haddtest/system/Timing/CMakeLists.txtaddtest/system/Timing/XField_LocalSplit_Timing_btest.cppedittest/system/CMakeLists.txteditsrc/Field/Element/ElementAssociativityVolumeConstructor.cppeditsrc/Field/XField_ElementLocal_impl.heditsrc/Field/Local/XField_LocalPatch.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_L2_ASExp_toy.cpptest/sandbox/Adapt2D_DGBR2_L2_ASExp_toy.cpptest/sandbox/Adapt1D_Galerkin_Stabilized_AD_BoundaryLayer_toy.cpptest/sandbox/Adapt2D_DGBR2_L2_CornerSingularity_toy.cpptest/sandbox/Adapt2D_DGBR2_NavierStokes_FlatPlate_toy.cpptest/unit/pde/AnalyticFunction/AD_TripleBL_Solutions.nbtest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cpptest/sandbox/Adapt1D_DGBR2_MMS_toy.cpptest/sandbox/Adapt2D_Mesh_Optimizer_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AR_toy.cpptest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppsrc/Discretization/Galerkin/Stabilization_Galerkin.htest/sandbox/Adapt2D_DGBR2_Poisson_toy.cpp75d70bc1df8546726426b5f416ff5b9512bf97f81547130591000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edureconciling merge conflicts and some tweaks 2019-01-10 09:29:51 -050075d70bc1df8546726426b5f416ff5b9512bf97f8reconciling merge conflicts and some tweaksedittest/sandbox/Adapt1D_DGBR2_MMS_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_AR_toy.cppedittest/sandbox/Adapt2D_DGBR2_L2_CornerSingularity_toy.cppeditsrc/Discretization/Galerkin/Stabilization_Galerkin.hedittest/sandbox/Adapt2D_Galerkin_Stabilized_L2_ASExp_toy.cppedittest/sandbox/Adapt2D_DGBR2_L2_ASExp_toy.cppedittest/sandbox/Adapt2D_DGBR2_Poisson_toy.cppedittest/sandbox/Adapt2D_DGBR2_NavierStokes_FlatPlate_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cppedittest/sandbox/Adapt2D_Mesh_Optimizer_toy.cppedittest/sandbox/Adapt1D_Galerkin_Stabilized_AD_BoundaryLayer_toy.cppedittest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppedittest/unit/pde/AnalyticFunction/AD_TripleBL_Solutions.nbtest/sandbox/Adapt2D_DGBR2_L2_ASExp_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_L2_ASExp_toy.cppsrc/pde/OutputCell_SolutionError.htest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_MultiScale_toy.cpp1ff9fa4f4761de0d00f3c543024c21f2a16705df1547131545000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edulicense updates 2019-01-10 09:45:45 -05001ff9fa4f4761de0d00f3c543024c21f2a16705dflicense updatesedittest/sandbox/Adapt2D_DGBR2_L2_ASExp_toy.cppedittest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_MultiScale_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_L2_ASExp_toy.cppeditsrc/pde/OutputCell_SolutionError.htest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cpp034954caa8a487bfbe5aed4a228f4400e2bcf83f1547146188000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edufixes to match avro 2019-01-10 13:49:48 -0500034954caa8a487bfbe5aed4a228f4400e2bcf83ffixes to match avroedittest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cpp38a68a6d61148b57a718ac1f24c236cc3a21395b1547159075000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduforgot to add the avro defined precompile check 2019-01-10 17:24:35 -050038a68a6d61148b57a718ac1f24c236cc3a21395bforgot to add the avro defined precompile checkedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppedittest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cpptest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cppa272112dabb4b6f0f31467f3055fe12307658e081547215445000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edurelaxed tolerances and forgot to split world 2019-01-11 09:04:05 -0500a272112dabb4b6f0f31467f3055fe12307658e08relaxed tolerances and forgot to split worldedittest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cppedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cpptest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cpp834053e5f9ba93ed6c3eb14fbeac0cdf1537435b1547224393000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edutweaking tol again... 2019-01-11 11:33:13 -0500834053e5f9ba93ed6c3eb14fbeac0cdf1537435btweaking tol again...edittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cppedittest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cpptest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cpp2627c8650ec377305d7a7cde14a8e86638dd7b261547228571000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduanother tweak... 2019-01-11 12:42:51 -05002627c8650ec377305d7a7cde14a8e86638dd7b26another tweak...edittest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cpptest/unit/Field/Local/XField_LocalPatch_Triangle_btest.cpptest/unit/Field/XField2D_ElementLocal_Dual_WholeGrids_btest.cpptest/unit/Field/Local/XField_LocalPatch_Tet_btest.cpptest/system/Timing/XField_LocalSplit_Timing_btest.cppsrc/Field/Local/XField_LocalPatch.hsrc/Field/Local/XField_LocalPatch.cpptest/unit/Field/Local/XField_LocalPatch_Pentatope_btest.cppa5965d5f987d2be56dcdaf592f901ab7133416071547238371000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.educleanup of localpatch + commenting 2019-01-11 15:26:11 -0500a5965d5f987d2be56dcdaf592f901ab713341607cleanup of localpatch + commentingedittest/system/Timing/XField_LocalSplit_Timing_btest.cppedittest/unit/Field/XField2D_ElementLocal_Dual_WholeGrids_btest.cppedittest/unit/Field/Local/XField_LocalPatch_Triangle_btest.cppedittest/unit/Field/Local/XField_LocalPatch_Tet_btest.cppedittest/unit/Field/Local/XField_LocalPatch_Pentatope_btest.cppeditsrc/Field/Local/XField_LocalPatch.heditsrc/Field/Local/XField_LocalPatch.cppsrc/Field/XFieldSpacetime_Local_Split.cppsrc/Field/XFieldSpacetime_Local_Split_Linear_Edge.hsrc/Field/XFieldSpacetime_Local_Split_Linear_Edge.cppsrc/Field/XFieldSpacetime_EdgeLocal.cppsrc/Field/XFieldSpacetime_Local_Split.hsrc/Field/XFieldSpacetime_ElementLocal.cppsrc/Field/Local/XField_LocalPatch.cpp05a736ac5ea88b57e563ec22b133c14627f667861547239662000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.educopyright 2019-01-11 15:47:42 -050005a736ac5ea88b57e563ec22b133c14627f66786copyrighteditsrc/Field/XFieldSpacetime_Local_Split.heditsrc/Field/XFieldSpacetime_EdgeLocal.cppeditsrc/Field/XFieldSpacetime_Local_Split.cppeditsrc/Field/Local/XField_LocalPatch.cppeditsrc/Field/XFieldSpacetime_Local_Split_Linear_Edge.cppeditsrc/Field/XFieldSpacetime_ElementLocal.cppeditsrc/Field/XFieldSpacetime_Local_Split_Linear_Edge.htest/unit/Field/XField4D_Local_Split_EdgeSplits_btest.cppsrc/Field/XField_Local_Common_Instantiate_4D.cpptest/unit/Field/XField4D_Local_Split_Linear_EdgeSplits_btest.cpptest/unit/Field/XField4D_ElementLocal_btest.cpp3dc4e922d3a3a08f611ff3ef537a46317b54ed2b1547240136000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edumore copyright 2019-01-11 15:55:36 -05003dc4e922d3a3a08f611ff3ef537a46317b54ed2bmore copyrightedittest/unit/Field/XField4D_Local_Split_Linear_EdgeSplits_btest.cppeditsrc/Field/XField_Local_Common_Instantiate_4D.cppedittest/unit/Field/XField4D_Local_Split_EdgeSplits_btest.cppedittest/unit/Field/XField4D_ElementLocal_btest.cppCMakeInclude/CompilerFlags.cmaketest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cppCMakeInclude/Builds/BuildSUITESPARSE.cmakesrc/Adaptation/MOESS/NLOPT/MOESS_Gradation_Optimizer_NLOPT.cppsrc/Adaptation/MOESS/TAO/MOESS_PX_Optimizer_TAO.cppCMakeLists.txttest/unit/Adaptation/MOESS/TAO/MOESS_PX_Optimizer_TAO_btest.cppsrc/Adaptation/MOESS/NLOPT/ImpliedMetric_Optimizer_NLOPT.cppCMakeInclude/Builds/BuildBoost.cmakesrc/Adaptation/MOESS/TAO/ImpliedMetric_Optimizer_TAO.cpptest/unit/Adaptation/MOESS/MOESS_PX_Optimizer_NLOPT_btest.cpptest/unit/Adaptation/MOESS/ImpliedMetric_Optimizer_NLOPT_btest.cpptest/unit/Adaptation/MOESS/MOESS_Gradation_Optimizer_NLOPT_btest.cppCMakeInclude/MakeSummaryFile.cmaketest/unit/Adaptation/MOESS/TAO/CMakeLists.txtbacb5df6d1dc727cdae9053eb9ec5f46210d9e381547310343000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdates for MOESS optimizations. Still needs more work. 2019-01-12 11:25:43 -0500bacb5df6d1dc727cdae9053eb9ec5f46210d9e38Updates for MOESS optimizations. Still needs more work.editsrc/Adaptation/MOESS/TAO/ImpliedMetric_Optimizer_TAO.cppedittest/unit/Adaptation/MOESS/TAO/MOESS_PX_Optimizer_TAO_btest.cppedittest/unit/Adaptation/MOESS/MOESS_PX_Optimizer_NLOPT_btest.cppeditsrc/Adaptation/MOESS/TAO/MOESS_PX_Optimizer_TAO.cppeditsrc/Adaptation/MOESS/NLOPT/ImpliedMetric_Optimizer_NLOPT.cppedittest/unit/Adaptation/MOESS/MOESS_Gradation_Optimizer_NLOPT_btest.cppedittest/unit/Adaptation/MOESS/TAO/CMakeLists.txteditCMakeInclude/MakeSummaryFile.cmakeedittest/unit/Adaptation/MOESS/ImpliedMetric_Optimizer_NLOPT_btest.cppeditCMakeInclude/Builds/BuildSUITESPARSE.cmakeeditCMakeLists.txteditsrc/Adaptation/MOESS/NLOPT/MOESS_Gradation_Optimizer_NLOPT.cppeditCMakeInclude/CompilerFlags.cmakeedittest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cppeditCMakeInclude/Builds/BuildBoost.cmakesrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion3D.hsrc/pde/NDConvert/PDENDConvertSpaceTime3D.hsrc/pde/AnalyticFunction/ScalarFunction3D.cppsrc/Discretization/AlgebraicEquationSet_Debug.hsrc/pde/AnalyticFunction/ScalarFunction2D.hsrc/Field/FieldLiftSpaceTime_DG_Cell.hsrc/pde/ForcingFunction3D_MMS.hsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion3D.hsrc/Field/FieldLiftGroupSpacetime_Traits.hsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_AdvectionDiffusion3D_AUDUSUG.cppsrc/Field/CMakeLists.txttest/sandbox/Solve3D_DGBR2_AD_ST_toy.cppsrc/Field/FieldLiftSpaceTime_DG_Cell_Instantiate_4D.cppsrc/Field/FieldLinesearch/FieldLinesearch_SpaceTime_Instantiate.cppsrc/Discretization/IntegrateBoundaryTraceGroups_FieldTrace.hsrc/Discretization/IntegratePeriodicTraceGroups.hsrc/Discretization/IntegrateInteriorTraceGroups.hsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion2D.hsrc/Discretization/IntegrateBoundaryTraceGroups.hsrc/pde/NDConvert/PDENDConvertSpaceTime2D.hsrc/pde/AnalyticFunction/ScalarFunction3D.hsrc/Field/FieldLinesearch/FieldLinesearch_SpaceTime.hsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion2D.hsrc/Field/Field_Local.hsrc/Field/FieldLiftSpaceTime_DG_Cell_impl.hsrc/Field/FieldLinesearch/FieldLinesearch_SpaceTime_impl.hsrc/Discretization/UpdateFraction/UpdateFractionCell.hsrc/Field/output_Tecplot.cppsrc/Field/FieldSequence.htest/system/Asymptotic/ErrorOrder_4D_DG_Pentatope_btest.cppsrc/Adaptation/MOESS/SolverInterface.hsrc/Field/output_Tecplot.h2271badaaaaaacd329148d4cd9d79b61682895c51547337932000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduInstantiations for 4D AD solve. 2019-01-12 19:05:32 -05002271badaaaaaacd329148d4cd9d79b61682895c5Instantiations for 4D AD solve.editsrc/Discretization/IntegrateInteriorTraceGroups.heditsrc/Discretization/IntegrateBoundaryTraceGroups.haddsrc/Field/FieldLinesearch/FieldLinesearch_SpaceTime_Instantiate.cppeditsrc/Discretization/UpdateFraction/UpdateFractionCell.haddsrc/Field/FieldLiftSpaceTime_DG_Cell_Instantiate_4D.cppedittest/sandbox/Solve3D_DGBR2_AD_ST_toy.cppedittest/system/Asymptotic/ErrorOrder_4D_DG_Pentatope_btest.cppeditsrc/pde/NDConvert/PDENDConvertSpaceTime2D.heditsrc/Field/FieldSequence.heditsrc/Field/output_Tecplot.cppeditsrc/Adaptation/MOESS/SolverInterface.heditsrc/Field/CMakeLists.txteditsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_AdvectionDiffusion3D_AUDUSUG.cppeditsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion2D.heditsrc/Field/output_Tecplot.heditsrc/pde/AnalyticFunction/ScalarFunction3D.cppaddsrc/Field/FieldLiftSpaceTime_DG_Cell.heditsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion2D.haddsrc/Field/FieldLinesearch/FieldLinesearch_SpaceTime.heditsrc/pde/AnalyticFunction/ScalarFunction2D.heditsrc/pde/ForcingFunction3D_MMS.heditsrc/pde/AnalyticFunction/ScalarFunction3D.heditsrc/Discretization/AlgebraicEquationSet_Debug.heditsrc/Field/Field_Local.haddsrc/Field/FieldLiftSpaceTime_DG_Cell_impl.heditsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion3D.haddsrc/Field/FieldLiftGroupSpacetime_Traits.heditsrc/Discretization/IntegrateBoundaryTraceGroups_FieldTrace.heditsrc/pde/NDConvert/PDENDConvertSpaceTime3D.heditsrc/Discretization/IntegratePeriodicTraceGroups.haddsrc/Field/FieldLinesearch/FieldLinesearch_SpaceTime_impl.heditsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion3D.hsrc/pde/NDConvert/PDENDConvertSpaceTime2D.hsrc/pde/NDConvert/PDENDConvertSpaceTime3D.hsrc/Field/FieldLiftSpaceTime_DG_Cell_Instantiate_4D.cppsrc/Field/FieldLinesearch/FieldLinesearch_SpaceTime.hf9369afa8cd497f6bcd655c4123c1e6467f7fb6f1547356803000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduA few fixes 2019-01-13 00:20:03 -0500f9369afa8cd497f6bcd655c4123c1e6467f7fb6fA few fixeseditsrc/Field/FieldLinesearch/FieldLinesearch_SpaceTime.heditsrc/pde/NDConvert/PDENDConvertSpaceTime2D.heditsrc/Field/FieldLiftSpaceTime_DG_Cell_Instantiate_4D.cppeditsrc/pde/NDConvert/PDENDConvertSpaceTime3D.hsrc/Adaptation/MOESS/TAO/MOESS_PX_Optimizer_TAO.cppsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion3D.hsrc/Adaptation/MOESS/TAO/ImpliedMetric_Optimizer_TAO.cpp99f2b0abec5d40782d74ace8f3cdd7a318b910f61547399934000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduCompile fixes 2019-01-13 12:18:54 -050099f2b0abec5d40782d74ace8f3cdd7a318b910f6Compile fixeseditsrc/Adaptation/MOESS/TAO/ImpliedMetric_Optimizer_TAO.cppeditsrc/Adaptation/MOESS/TAO/MOESS_PX_Optimizer_TAO.cppeditsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion3D.hsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatMul/MatMul_Native_MatrixS_Instantiate.cppsrc/Field/output_Tecplot_impl.hsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_AdvectionDiffusion3D_AUDUSUG.cppsrc/Field/output_Tecplot.cppsrc/Field/FieldData/FieldDataInvMassMatrix_Cell.cppsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion3D.cppsrc/Discretization/DG/DiscretizationDGBR2.cpp9767f35a9413935267ed56016b9704bfcf3abf091547409272000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMore instantiations for 4D 2019-01-13 14:54:32 -05009767f35a9413935267ed56016b9704bfcf3abf09More instantiations for 4Deditsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_AdvectionDiffusion3D_AUDUSUG.cppeditsrc/Field/output_Tecplot.cppeditsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatMul/MatMul_Native_MatrixS_Instantiate.cppeditsrc/Field/FieldData/FieldDataInvMassMatrix_Cell.cppeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppeditsrc/Field/output_Tecplot_impl.heditsrc/Discretization/DG/DiscretizationDGBR2.cppeditsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion3D.cpptest/unit/Field/XField2D_EdgeLocal_Primal_Split_btest.cpptest/unit/Field/XField2D_ElementLocal_Dual_WholeGrids_btest.cppsrc/Field/XField_Local_Common_Instantiate_2D.cppsrc/Field/XField_Local_Common.htest/unit/Field/XField2D_EdgeLocal_Primal_btest.cppsrc/Field/XField_ElementLocal_impl.htest/system/LocalSolve/EdgeLocalSolve2D_Primal_Galerkin_Stabilized_Triangle_AD_btest.cpp2b404c65ab6f4fe78c14341e257188dd82ff40761547484594000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduremoved anachronistic definition of primal grid. Primal grid now matches the behavior of the normal DG grids. Unit tests have just been turned off in the meantime 2019-01-14 11:49:54 -05002b404c65ab6f4fe78c14341e257188dd82ff4076removed anachronistic definition of primal grid. Primal grid now matches the behavior of the normal DG grids. Unit tests have just been turned off in the meantimeeditsrc/Field/XField_ElementLocal_impl.heditsrc/Field/XField_Local_Common_Instantiate_2D.cppeditsrc/Field/XField_Local_Common.hedittest/unit/Field/XField2D_ElementLocal_Dual_WholeGrids_btest.cppedittest/unit/Field/XField2D_EdgeLocal_Primal_Split_btest.cppedittest/unit/Field/XField2D_EdgeLocal_Primal_btest.cppedittest/system/LocalSolve/EdgeLocalSolve2D_Primal_Galerkin_Stabilized_Triangle_AD_btest.cpptest/unit/Field/Local/CMakeLists.txtsrc/Field/Local/XField_LocalPatch.hsrc/Field/Local/XField_LocalPatch.cpptest/unit/Field/Local/XField_LocalPatch_Pentatope_btest.cpptest/unit/Field/Local/XField_LocalPatch_Tet_btest.cpp71da8164cdf1ab9bcaf5d4495d71a2f87dac4d2e1547489602000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edumake sure mpi is init'd before calling rank by actually running in parallel 2019-01-14 13:13:22 -050071da8164cdf1ab9bcaf5d4495d71a2f87dac4d2emake sure mpi is init'd before calling rank by actually running in paralleleditsrc/Field/Local/XField_LocalPatch.hedittest/unit/Field/Local/CMakeLists.txtedittest/unit/Field/Local/XField_LocalPatch_Pentatope_btest.cppedittest/unit/Field/Local/XField_LocalPatch_Tet_btest.cppeditsrc/Field/Local/XField_LocalPatch.cpptest/unit/Field/XField2D_ElementLocal_Dual_WholeGrids_btest.cpp8ac37f883c359a8a8d41ccb54b51b1d40ab67d311547489644000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edurevert back to dual 2019-01-14 13:14:04 -05008ac37f883c359a8a8d41ccb54b51b1d40ab67d31revert back to dualedittest/unit/Field/XField2D_ElementLocal_Dual_WholeGrids_btest.cpptest/system/Timing/XField_LocalSplit_Timing_btest.cpptest/unit/Field/Local/XField_LocalPatch_Triangle_btest.cpptest/unit/Field/Local/XField_LocalPatch_Pentatope_btest.cpptest/unit/Field/Local/XField_LocalPatch_Tet_btest.cpp42d667d4502690efb07afde33359034be70134801547502919000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduifdef SANS_AVRO for tests with CKF triangulation 2019-01-14 16:55:19 -050042d667d4502690efb07afde33359034be7013480ifdef SANS_AVRO for tests with CKF triangulationedittest/unit/Field/Local/XField_LocalPatch_Pentatope_btest.cppedittest/unit/Field/Local/XField_LocalPatch_Triangle_btest.cppedittest/system/Timing/XField_LocalSplit_Timing_btest.cppedittest/unit/Field/Local/XField_LocalPatch_Tet_btest.cpptest/system/Adaptation/SolverInterface_Galerkin_Stabilized_btest.cpp1ac7c1c66899d19b3ac09718d7adce86bbb128a01547511197000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educhanged to Dual in the system test 2019-01-14 19:13:17 -05001ac7c1c66899d19b3ac09718d7adce86bbb128a0changed to Dual in the system testedittest/system/Adaptation/SolverInterface_Galerkin_Stabilized_btest.cpptest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Line_IBL_airfoilOnly_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_TwoLayerNewton_btest.cppe54301a82c88be2692ea48c98f330dbc43c67b371547518773000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduattempted to fix nightly tests 2019-01-14 18:19:33 -0800e54301a82c88be2692ea48c98f330dbc43c67b37attempted to fix nightly testsedittest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Line_IBL_airfoilOnly_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_TwoLayerNewton_btest.cpptest/system/Timing/CMakeLists.txttest/system/Timing/XField_LocalSplit_Timing_btest.cppfc56c803468046e21dd654899f04900c5340c1251547520856000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduRelaxed timings, fixed warning 2019-01-14 21:54:16 -0500fc56c803468046e21dd654899f04900c5340c125Relaxed timings, fixed warningedittest/system/Timing/XField_LocalSplit_Timing_btest.cppedittest/system/Timing/CMakeLists.txttest/system/IO/ErrorOrder/ErrorOrder_1D_HDGAdvective_Advection_MinTest.txttest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Line_IBL_airfoilOnly_btest.cpptest/system/IO/ErrorOrder/ErrorOrder_1D_HDGAdvective_Advection_FullTest.txtb425e325d17dd981d40cfe445a2ca67d3698518b1547521801000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduUpdated pyrite files to fix nightly tests 2019-01-14 19:10:01 -0800b425e325d17dd981d40cfe445a2ca67d3698518bUpdated pyrite files to fix nightly testsedittest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Line_IBL_airfoilOnly_btest.cppedittest/system/IO/ErrorOrder/ErrorOrder_1D_HDGAdvective_Advection_MinTest.txtedittest/system/IO/ErrorOrder/ErrorOrder_1D_HDGAdvective_Advection_FullTest.txttest/system/Timing/XField_LocalSplit_Timing_btest.cpp.gitignoretest/system/Timing/CMakeLists.txttest/sandbox/XField_LocalSplit_Timing_toy.cpptest/system/CMakeLists.txt2a6bcd06e369cbc821673cd75aa06bff428e66a91547554807000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMoved timing test into sandbox 2019-01-15 07:20:07 -05002a6bcd06e369cbc821673cd75aa06bff428e66a9Moved timing test into sandboxedit.gitignoreedittest/system/CMakeLists.txtaddtest/sandbox/XField_LocalSplit_Timing_toy.cppdeletetest/system/Timing/CMakeLists.txtdeletetest/system/Timing/XField_LocalSplit_Timing_btest.cppsrc/Meshing/refine/XField3D_refine.cppsrc/Meshing/refine/XField_refine.hsrc/Meshing/refine/refine_grid3D.cppsrc/Meshing/refine/refine_ptr.hsrc/Meshing/refine/refine_defs.hsrc/Meshing/refine/MultiScale_metric.cppsrc/Meshing/refine/MesherInterface_refine.cppsrc/UserInterfaces/capsAIM/markWakeEdges.cppsrc/Meshing/refine/CMakeLists.txt81513d2ed34cb8c7048ef13657209438942b4ac31547561545000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduCleanup of refine interface with auto memory management. 2019-01-15 09:12:25 -050081513d2ed34cb8c7048ef13657209438942b4ac3Cleanup of refine interface with auto memory management.editsrc/Meshing/refine/XField_refine.haddsrc/Meshing/refine/refine_defs.heditsrc/Meshing/refine/MesherInterface_refine.cppeditsrc/Meshing/refine/XField3D_refine.cppaddsrc/Meshing/refine/refine_grid3D.cppaddsrc/Meshing/refine/refine_ptr.heditsrc/Meshing/refine/MultiScale_metric.cppeditsrc/UserInterfaces/capsAIM/markWakeEdges.cppeditsrc/Meshing/refine/CMakeLists.txtsrc/Meshing/refine/refine_grid3D.cpp6e9d728169658311c62135b1979b5aea46fd94ab1547591502000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix include 2019-01-15 17:31:42 -05006e9d728169658311c62135b1979b5aea46fd94abFix includeeditsrc/Meshing/refine/refine_grid3D.cppsrc/Field/XField_Local_Common_Instantiate_3D.cpp32ff757c09095f24eddf5f160a3c0f80b297c21a1547670467000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduadded fix to 3D 2019-01-16 15:27:47 -050032ff757c09095f24eddf5f160a3c0f80b297c21aadded fix to 3Deditsrc/Field/XField_Local_Common_Instantiate_3D.cppsrc/Field/XField_Local_Common_Instantiate_4D.cppsrc/Field/XField_Local_Common_Instantiate_3D.cpp7c304b61a6225e06e35e4d2a2c01d8a636216a431547673807000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduremoved the separate 4D file, just added an instantiate at the end of 3D 2019-01-16 16:23:27 -05007c304b61a6225e06e35e4d2a2c01d8a636216a43removed the separate 4D file, just added an instantiate at the end of 3Ddeletesrc/Field/XField_Local_Common_Instantiate_4D.cppeditsrc/Field/XField_Local_Common_Instantiate_3D.cpptest/system/IO/ErrorOrder/ErrorOrder_1D_HDGAdvective_Advection_FullTest.txttest/system/Asymptotic/ErrorOrder_1D_HDGAdvective_Advection_btest.cpp9c36e5344141878d6499d22084de57deada6c01d1547676354000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edup=7 led to error close to machine zero, which seemed to cause touble to nightly ErrorOrder test. Cut back p from 7 to 6 2019-01-16 17:05:54 -05009c36e5344141878d6499d22084de57deada6c01dp=7 led to error close to machine zero, which seemed to cause touble to nightly ErrorOrder test. Cut back p from 7 to 6edittest/system/IO/ErrorOrder/ErrorOrder_1D_HDGAdvective_Advection_FullTest.txtedittest/system/Asymptotic/ErrorOrder_1D_HDGAdvective_Advection_btest.cpptest/system/IO/ErrorOrder/ErrorOrder_1D_HDGAdvective_Advection_FullTest.txttest/system/Asymptotic/ErrorOrder_1D_HDGAdvective_Advection_btest.cppe5e2a25b81be1f7110241242743540e117d3c3bd1547676653000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edup=6 still too high for pyrite test for ErrorOrder 2019-01-16 17:10:53 -0500e5e2a25b81be1f7110241242743540e117d3c3bdp=6 still too high for pyrite test for ErrorOrderedittest/system/IO/ErrorOrder/ErrorOrder_1D_HDGAdvective_Advection_FullTest.txtedittest/system/Asymptotic/ErrorOrder_1D_HDGAdvective_Advection_btest.cppsrc/LinearAlgebra/SparseLinAlg/ScalarVector.hsrc/LinearAlgebra/SparseLinAlg/ScalarVector_impl.h0ac404cf49aa867fe3e601965c56eb7bd5eb11ea1547687333000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAttempted to warning "use of zero-allocated memory" 2019-01-16 20:08:53 -05000ac404cf49aa867fe3e601965c56eb7bd5eb11eaAttempted to warning "use of zero-allocated memory"editsrc/LinearAlgebra/SparseLinAlg/ScalarVector_impl.heditsrc/LinearAlgebra/SparseLinAlg/ScalarVector.htest/sandbox/Adapt3D_L2Project_MultiScale_toy.cpptest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt3D_DG_AD_L2_MOESS_toy.cpptest/unit/LinearAlgebra/DenseLinAlg/MatrixS_Trace_btest.cppsrc/Adaptation/MOESS/SolverInterface_L2Project.hsrc/LinearAlgebra/DenseLinAlg/StaticSize/SVD/MatrixS_SVD_lapack_double.cppsrc/Adaptation/MOESS/ErrorModel_Elemental.hsrc/LinearAlgebra/DenseLinAlg/StaticSize/SVD/MatrixS_SVD_lapack_float.cppsrc/LinearAlgebra/DenseLinAlg/StaticSize/SVD/MatrixS_SVD_lapack_impl.htest/sandbox/Adapt2D_L2Project_MOESS_toy.cpptest/sandbox/Adapt3D_CG_AD_L2_MOESS_toy.cpptest/sandbox/Adapt3D_CG_AD_L2_MultiScale_toy.cpptest/sandbox/Adapt3D_L2Project_MOESS_toy.cppsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_Trace.hc8013a4d836f6b0816ced6635740f0705854e34f1547697425000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduSome cleanup in the sandbox. Added 2D L2Project adaptation 2019-01-16 22:57:05 -0500c8013a4d836f6b0816ced6635740f0705854e34fSome cleanup in the sandbox. Added 2D L2Project adaptationdeletetest/sandbox/Adapt3D_CG_AD_L2_MOESS_toy.cppdeletetest/sandbox/Adapt3D_DG_AD_L2_MOESS_toy.cppaddtest/sandbox/Adapt2D_L2Project_MOESS_toy.cppeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/SVD/MatrixS_SVD_lapack_double.cppeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/SVD/MatrixS_SVD_lapack_float.cppedittest/unit/LinearAlgebra/DenseLinAlg/MatrixS_Trace_btest.cppeditsrc/Adaptation/MOESS/ErrorModel_Elemental.hedittest/sandbox/Adapt3D_L2Project_MOESS_toy.cppeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/SVD/MatrixS_SVD_lapack_impl.hedittest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cppdeletetest/sandbox/Adapt3D_CG_AD_L2_MultiScale_toy.cppeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_Trace.haddtest/sandbox/Adapt3D_L2Project_MultiScale_toy.cppeditsrc/Adaptation/MOESS/SolverInterface_L2Project.htest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cpptest/unit/LinearAlgebra/DenseLinAlg/MatrixS_Trace_btest.cppsrc/Field/output_Tecplot_Metric.cppsrc/Adaptation/MeshAdapter.cppsrc/Adaptation/MeshAdapter.hsrc/Adaptation/MOESS/ErrorModel_Elemental.cppexternal/CMakeLists.txtsrc/Field/CMakeLists.txtCMakeInclude/Builds/BuildAVRO.cmakesrc/Meshing/avro/CMakeLists.txttest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_avro_toy.cppsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_Trace.hCMakeInclude/Finds/FindAVRO.cmakesrc/Field/output_Tecplot.hscripts/jenkins/SANS_Depend.shsrc/UserInterfaces/LIPSolver.cppb0915d3bc6a10f390d521920e07510af5c7c2f8b1547747890000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded tecplot dump for metric fields. Other small fixes 2019-01-17 12:58:10 -0500b0915d3bc6a10f390d521920e07510af5c7c2f8bAdded tecplot dump for metric fields. Other small fixeseditsrc/Adaptation/MOESS/ErrorModel_Elemental.cppeditCMakeInclude/Builds/BuildAVRO.cmakeeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_Trace.heditscripts/jenkins/SANS_Depend.sheditsrc/Field/output_Tecplot.heditsrc/Adaptation/MeshAdapter.heditexternal/CMakeLists.txtedittest/unit/LinearAlgebra/DenseLinAlg/MatrixS_Trace_btest.cppeditCMakeInclude/Finds/FindAVRO.cmakeaddsrc/Field/output_Tecplot_Metric.cppeditsrc/UserInterfaces/LIPSolver.cppeditsrc/Meshing/avro/CMakeLists.txteditsrc/Field/CMakeLists.txteditsrc/Adaptation/MeshAdapter.cppedittest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cppdeletetest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_avro_toy.cppsrc/Meshing/Embedding/MesherInterface_Embedding.cpp102eddc70548807d76edf89159381a20b711c47a1547765168000https://acdl.mit.edu/csi/user/ursachiursachiursachi@mit.eduChanged floor to round for generating new 1D mesh 2019-01-17 17:46:08 -0500102eddc70548807d76edf89159381a20b711c47aChanged floor to round for generating new 1D mesheditsrc/Meshing/Embedding/MesherInterface_Embedding.cppsrc/pde/IBL/FluidModels.hsrc/PanelMethod/AlgebraicEquationSet_ProjectToQauxi.hsrc/pde/IBL/PDEIBLUniField.h59861fd50c2f1228166109281cea572c611265971547776707000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduMinor refactoring 2019-01-17 20:58:27 -050059861fd50c2f1228166109281cea572c61126597Minor refactoringeditsrc/pde/IBL/FluidModels.heditsrc/PanelMethod/AlgebraicEquationSet_ProjectToQauxi.heditsrc/pde/IBL/PDEIBLUniField.htest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cppCMakeInclude/Builds/BuildPARMETIS.cmakeCMakeInclude/Builds/BuildTRIANGLE.cmakeCMakeInclude/Builds/BuildBoost.cmakeCMakeInclude/Builds/BuildREFINE.cmaketest/sandbox/Adapt2D_L2Project_MOESS_toy.cppexternal/CMakeLists.txttest/sandbox/Adapt1D_L2Project_MOESS_toy.cppCMakeInclude/Builds/BuildTETGEN.cmakeCMakeInclude/Builds/BuildAVRO.cmake5850c328df81298728c54da86f1c8f59a487888b1547781847000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduCompile fixes and more dependency warning suppressions 2019-01-17 22:24:07 -05005850c328df81298728c54da86f1c8f59a487888bCompile fixes and more dependency warning suppressionseditexternal/CMakeLists.txteditCMakeInclude/Builds/BuildTRIANGLE.cmakeeditCMakeInclude/Builds/BuildTETGEN.cmakeeditCMakeInclude/Builds/BuildPARMETIS.cmakeeditCMakeInclude/Builds/BuildBoost.cmakeaddtest/sandbox/Adapt1D_L2Project_MOESS_toy.cppeditCMakeInclude/Builds/BuildAVRO.cmakeeditCMakeInclude/Builds/BuildREFINE.cmakeedittest/sandbox/Adapt2D_L2Project_MOESS_toy.cppedittest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cppCMakeInclude/Finds/FindAVRO.cmake26f3396802c19f01e78f5cb3d014ffda62045e701547817854000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdd dl library for avro 2019-01-18 08:24:14 -050026f3396802c19f01e78f5cb3d014ffda62045e70Add dl library for avroeditCMakeInclude/Finds/FindAVRO.cmakesrc/pde/IBL/BCIBLUniField.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_CapturedTransition_btest.cpptest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DGAdv_IBLUniField_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test_FullUpwind.txttest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_forcedTransition0p8244925_naca0004_ne64_p1_Test_CapturedTransition_FullUpwind.txtsrc/pde/IBL/PDEIBLUniField.htest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_forcedTransition0p8244925_naca0004_ne64_p1_Test_CapturedTransition_LFflux.txttest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cppsrc/pde/IBL/VarInterpret2D.htest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DGAdv_IBLUniField_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test_LFflux.txttest/unit/pde/IBL/VarInterpret2D_btest.cpp0000dd9fb57e785d576df13c960a8c5a078506621547831180000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduReplaced nt transport equation with G variable as in SciTech paper, although the results are equivalent 2019-01-18 12:06:20 -05000000dd9fb57e785d576df13c960a8c5a07850662Replaced nt transport equation with G variable as in SciTech paper, although the results are equivalentedittest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DGAdv_IBLUniField_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test_FullUpwind.txteditsrc/pde/IBL/PDEIBLUniField.heditsrc/pde/IBL/BCIBLUniField.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cppedittest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DGAdv_IBLUniField_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test_LFflux.txteditsrc/pde/IBL/VarInterpret2D.hedittest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_forcedTransition0p8244925_naca0004_ne64_p1_Test_CapturedTransition_FullUpwind.txtedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_CapturedTransition_btest.cppedittest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_forcedTransition0p8244925_naca0004_ne64_p1_Test_CapturedTransition_LFflux.txtedittest/unit/pde/IBL/VarInterpret2D_btest.cpptest/unit/UnitGrids/XField2D_Box_Triangle_Lagrange_X1_btest.cppsrc/Discretization/Galerkin/IntegrandInteriorTrace_Galerkin.htest/sandbox/Solve2D_DGAdvective_AD_RK_ParallelPeriodic_toy.cpptest/unit/UnitGrids/XField2D_Box_Triangle_Lagrange_X1.cpptest/unit/UnitGrids/XField2D_Box_Triangle_Lagrange_X1.hsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective_impl.h138af08a26e33b65e05258d69dc1efcbccf8f2111548081051000https://acdl.mit.edu/csi/user/kug46kug46kug46@psu.eduFiles for parallel periodic XField2D_Box_Triangle_Lagrange (Issues need to be fixed) 2019-01-21 09:30:51 -0500138af08a26e33b65e05258d69dc1efcbccf8f211Files for parallel periodic XField2D_Box_Triangle_Lagrange (Issues need to be fixed)addtest/sandbox/Solve2D_DGAdvective_AD_RK_ParallelPeriodic_toy.cppedittest/unit/UnitGrids/XField2D_Box_Triangle_Lagrange_X1.cppedittest/unit/UnitGrids/XField2D_Box_Triangle_Lagrange_X1.heditsrc/Discretization/Galerkin/IntegrandInteriorTrace_Galerkin.heditsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective_impl.hedittest/unit/UnitGrids/XField2D_Box_Triangle_Lagrange_X1_btest.cppsrc/pde/IBL/PDEIBLUniField.h883ae67ba2c9d12408501a5eb3646b4fe57ff8f81548171218000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded a layer of abstractions when evaluating fluxes, sources etc. in IBL pde class 2019-01-22 10:33:38 -0500883ae67ba2c9d12408501a5eb3646b4fe57ff8f8Added a layer of abstractions when evaluating fluxes, sources etc. in IBL pde classeditsrc/pde/IBL/PDEIBLUniField.hsrc/pde/IBL/PDEIBLUniField.ha95fbbe004e0c2c2ed3360a6c61206fa9798f5e71548171892000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed formatting... previously went under the radar since vera++ was not installed locally... 2019-01-22 10:44:52 -0500a95fbbe004e0c2c2ed3360a6c61206fa9798f5e7Fixed formatting... previously went under the radar since vera++ was not installed locally...editsrc/pde/IBL/PDEIBLUniField.hsrc/LinearAlgebra/DenseLinAlg/tools/dot.hsrc/tools/SANSTraitsScalar.ha08d5d0b2879d5cdbbacdf67b4f384c2d3dab5f01548174592000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded scalar and dot product fixes for MatrixSymS 2019-01-22 11:29:52 -0500a08d5d0b2879d5cdbbacdf67b4f384c2d3dab5f0Added scalar and dot product fixes for MatrixSymSeditsrc/LinearAlgebra/DenseLinAlg/tools/dot.heditsrc/tools/SANSTraitsScalar.hsrc/pde/IBL/PDEIBLUniField.h1a5b8dd57433cda53a66ffdeeac9e0ffd70921b61548195721000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduEnabled smooth laminar/turbulent blending 2019-01-22 17:22:01 -05001a5b8dd57433cda53a66ffdeeac9e0ffd70921b6Enabled smooth laminar/turbulent blendingeditsrc/pde/IBL/PDEIBLUniField.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_LineSearchNewton_btest.cpptest/system/Asymptotic/ErrorOrder_1D_HDGAdvective_Advection_btest.cpp634b71006ed5e3f56f9d6d1b556e86686eb42a5d1548286306000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed intel errors by relaxing tolerance and reconciling a missing pyrite file specialized for intel MKL 2019-01-23 17:31:46 -0600634b71006ed5e3f56f9d6d1b556e86686eb42a5dFixed intel errors by relaxing tolerance and reconciling a missing pyrite file specialized for intel MKLedittest/system/Asymptotic/ErrorOrder_1D_HDGAdvective_Advection_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_LineSearchNewton_btest.cpptest/sandbox/Adapt2D_L2Project_MOESS_toy.cppefa58dff3f6ce5c806efcdea4beb9404dd214acb1548347268000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdates for 2D L2 Projection sandbox test 2019-01-24 11:27:48 -0500efa58dff3f6ce5c806efcdea4beb9404dd214acbUpdates for 2D L2 Projection sandbox testedittest/sandbox/Adapt2D_L2Project_MOESS_toy.cpptest/sandbox/Adapt1D_L2Project_MOESS_toy.cppb1f74d3514d0a77449872181374557a4b269a4f31548347290000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdates for 1D L2 Projection sandbox test 2019-01-24 11:28:10 -0500b1f74d3514d0a77449872181374557a4b269a4f3Updates for 1D L2 Projection sandbox testedittest/sandbox/Adapt1D_L2Project_MOESS_toy.cppsrc/Adaptation/MOESS/ErrorModel_Elemental.cppsrc/Adaptation/MOESS/ErrorModel.cpptest/unit/Adaptation/MOESS/ErrorModel_Elemental_btest.cppsrc/Adaptation/MOESS/MOESS.hsrc/Adaptation/MeshAdapter.cppCMakeInclude/Builds/BuildNLOPT.cmakesrc/Adaptation/MOESS/MOESS.cppsrc/Adaptation/MOESS/ErrorModel_Elemental.hsrc/Adaptation/MOESS/CostModel_LogEuclidean.cppsrc/Adaptation/MOESS/CostModel_LogEuclidean.hsrc/Adaptation/callMesher1D.cpptest/sandbox/Adapt1D_DGBR2_L2Project_toy.cpp3cf80ccdf53720d1d6346afa3ad53a3da12f90f71548357380000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded new trace free step matrix error model. Not enabled. 2019-01-24 14:16:20 -05003cf80ccdf53720d1d6346afa3ad53a3da12f90f7Added new trace free step matrix error model. Not enabled.editsrc/Adaptation/MeshAdapter.cppedittest/unit/Adaptation/MOESS/ErrorModel_Elemental_btest.cppeditsrc/Adaptation/MOESS/CostModel_LogEuclidean.heditsrc/Adaptation/callMesher1D.cppeditsrc/Adaptation/MOESS/ErrorModel.cppeditsrc/Adaptation/MOESS/ErrorModel_Elemental.heditsrc/Adaptation/MOESS/CostModel_LogEuclidean.cppeditsrc/Adaptation/MOESS/ErrorModel_Elemental.cppeditsrc/Adaptation/MOESS/MOESS.heditsrc/Adaptation/MOESS/MOESS.cppeditCMakeInclude/Builds/BuildNLOPT.cmakedeletetest/sandbox/Adapt1D_DGBR2_L2Project_toy.cppsrc/Adaptation/MOESS/NLOPT/MOESS_PX_Optimizer_NLOPT.hsrc/Adaptation/MOESS/NLOPT/MOESS_PX_Optimizer_NLOPT.cppsrc/Meshing/FeFloa/MesherInterface_FeFloa.cppsrc/Field/output_Tecplot_Metric.cpptest/unit/Adaptation/MOESS/MOESS_PX_Optimizer_NLOPT_btest.cppc08d9412a1add367891f7b5a08c485761601f3b71548373499000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduNormalize MOESS optimization with nlopt 2019-01-24 18:44:59 -0500c08d9412a1add367891f7b5a08c485761601f3b7Normalize MOESS optimization with nlopteditsrc/Adaptation/MOESS/NLOPT/MOESS_PX_Optimizer_NLOPT.heditsrc/Meshing/FeFloa/MesherInterface_FeFloa.cppeditsrc/Adaptation/MOESS/NLOPT/MOESS_PX_Optimizer_NLOPT.cppeditsrc/Field/output_Tecplot_Metric.cppedittest/unit/Adaptation/MOESS/MOESS_PX_Optimizer_NLOPT_btest.cppsrc/Adaptation/MOESS/ErrorModel.cpp56d708c2b0bbfd473a587edec16c07c69c991c721548381578000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed undefined reference 2019-01-24 20:59:38 -050056d708c2b0bbfd473a587edec16c07c69c991c72Fixed undefined referenceeditsrc/Adaptation/MOESS/ErrorModel.cppsrc/pde/IBL/PDEIBLUniField.hdf403899a1edb8d773cd7016e0d9db894fb064ba1548426989000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed a bug in laminar/turbulent blending function 2019-01-25 09:36:29 -0500df403899a1edb8d773cd7016e0d9db894fb064baFixed a bug in laminar/turbulent blending functioneditsrc/pde/IBL/PDEIBLUniField.hsrc/Adaptation/MOESS/NLOPT/MOESS_PX_Optimizer_NLOPT.hsrc/Adaptation/MOESS/NLOPT/MOESS_PX_Optimizer_NLOPT.cppsrc/Adaptation/MOESS/NLOPT/MOESS_SANS_Optimizer_NLOPT.hsrc/Adaptation/MOESS/NLOPT/MOESS_SANS_Optimizer_NLOPT.cppsrc/Adaptation/MOESS/MOESSParams.hsrc/Adaptation/MOESS/MOESS.hsrc/Adaptation/MOESS/MOESS.cpptest/unit/Adaptation/MOESS/MOESS_SANS_Optimizer_NLOPT_btest.cpp025edd829c97dcd5c161c1c6d6fa56afb82299ff1548460444000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded new MOESS optimization without global FrobNorm 2019-01-25 18:54:04 -0500025edd829c97dcd5c161c1c6d6fa56afb82299ffAdded new MOESS optimization without global FrobNormaddtest/unit/Adaptation/MOESS/MOESS_SANS_Optimizer_NLOPT_btest.cppeditsrc/Adaptation/MOESS/NLOPT/MOESS_PX_Optimizer_NLOPT.heditsrc/Adaptation/MOESS/MOESS.heditsrc/Adaptation/MOESS/NLOPT/MOESS_PX_Optimizer_NLOPT.cppeditsrc/Adaptation/MOESS/MOESS.cppaddsrc/Adaptation/MOESS/NLOPT/MOESS_SANS_Optimizer_NLOPT.haddsrc/Adaptation/MOESS/NLOPT/MOESS_SANS_Optimizer_NLOPT.cppeditsrc/Adaptation/MOESS/MOESSParams.hsrc/Adaptation/CMakeLists.txtc6e3a8c39a964db283c35b71d686a08509516b9b1548462399000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduForgot CMake file 2019-01-25 19:26:39 -0500c6e3a8c39a964db283c35b71d686a08509516b9bForgot CMake fileeditsrc/Adaptation/CMakeLists.txtCMakeInclude/MakeSummaryFile.cmakeacfdabdecd8fe8d650e2232f2e164a7621abba161548513751000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduSmall fix for cmake summary 2019-01-26 09:42:31 -0500acfdabdecd8fe8d650e2232f2e164a7621abba16Small fix for cmake summaryeditCMakeInclude/MakeSummaryFile.cmaketest/system/LocalSolve/CMakeLists.txttest/system/AnalyticSolve/AnalyticSolve2D_DGAdvective_Triangle_Euler_UniformStream_btest.cppe973828c01006019cd76deec043a3d9a22a2143e1548531527000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduWeekly test fixes 2019-01-26 14:38:47 -0500e973828c01006019cd76deec043a3d9a22a2143eWeekly test fixesedittest/system/AnalyticSolve/AnalyticSolve2D_DGAdvective_Triangle_Euler_UniformStream_btest.cppedittest/system/LocalSolve/CMakeLists.txtsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective_impl.hsrc/Discretization/Galerkin/IntegrandInteriorTrace_Galerkin_manifold.htest/sandbox/Solve2D_DGAdvective_AD_RK_ParallelPeriodic_toy.cpp79227fae5ffd202540abe7062ba2cb34a45c76b81548534899000https://acdl.mit.edu/csi/user/kug46kug46kug46@psu.eduModified AlgEqSet, IntegrandInteriorTrace and 2D DGAdvective toy for Parallel 2D Periodic Grids 2019-01-26 15:34:59 -050079227fae5ffd202540abe7062ba2cb34a45c76b8Modified AlgEqSet, IntegrandInteriorTrace and 2D DGAdvective toy for Parallel 2D Periodic Gridseditsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective_impl.hedittest/sandbox/Solve2D_DGAdvective_AD_RK_ParallelPeriodic_toy.cppeditsrc/Discretization/Galerkin/IntegrandInteriorTrace_Galerkin_manifold.htest/unit/Discretization/DG/AlgebraicEquationSet_DGBR2_Triangle_AD_btest.cpptest/unit/Adaptation/MOESS/TAO/ImpliedMetric_Optimizer_TAO_btest.cpptest/system/Asymptotic/CMakeLists.txt52d60f5d033fd482e9fd8514852220e650c9ac261548603487000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduTowards parallel PETSc/TAO 2019-01-27 10:38:07 -050052d60f5d033fd482e9fd8514852220e650c9ac26Towards parallel PETSc/TAOedittest/unit/Discretization/DG/AlgebraicEquationSet_DGBR2_Triangle_AD_btest.cppedittest/system/Asymptotic/CMakeLists.txtedittest/unit/Adaptation/MOESS/TAO/ImpliedMetric_Optimizer_TAO_btest.cppsrc/pde/IBL/PDEIBL2D.hsrc/pde/IBL/FluidModels.htest/unit/pde/IBL/FluidModels_btest.cpptest/unit/pde/IBL/PDEIBL2D_btest.cppsrc/pde/IBL/PDEIBLUniField.h7aff95b9c3cd6a8f1fb371a64641769421145b4c1548603951000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactored intermittency calculation 2019-01-27 10:45:51 -05007aff95b9c3cd6a8f1fb371a64641769421145b4cRefactored intermittency calculationedittest/unit/pde/IBL/PDEIBL2D_btest.cppeditsrc/pde/IBL/PDEIBLUniField.heditsrc/pde/IBL/FluidModels.heditsrc/pde/IBL/PDEIBL2D.hedittest/unit/pde/IBL/FluidModels_btest.cppsrc/PanelMethod/ProjectionToQauxi_IBL.hsrc/pde/IBL/PDEIBLUniField.h5ffc9553009ac34d32f87fc3491abfde6ee543841548610735000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduGenerailized Projection to Qauxi to handle blended intermittency. 2019-01-27 12:38:55 -05005ffc9553009ac34d32f87fc3491abfde6ee54384Generailized Projection to Qauxi to handle blended intermittency.editsrc/PanelMethod/ProjectionToQauxi_IBL.heditsrc/pde/IBL/PDEIBLUniField.hsrc/Adaptation/MOESS/CostModel_LogEuclidean.hsrc/Adaptation/MOESS/CostModel_LogEuclidean.cpp0791814ad9ffe34ae9f2f263f07fbab6007046891548620041000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduSome cleanup of logEuclidian cost 2019-01-27 15:14:01 -05000791814ad9ffe34ae9f2f263f07fbab600704689Some cleanup of logEuclidian costeditsrc/Adaptation/MOESS/CostModel_LogEuclidean.cppeditsrc/Adaptation/MOESS/CostModel_LogEuclidean.hsrc/Meshing/Embedding/MesherInterface_Embedding.cppsrc/Field/XFieldLine_ElementLocal.cppsrc/Meshing/XField1D/XField1D.cppsrc/BasisFunction/ElementEdges.h1c8cbc5fd82d3a7f38c0af631e370ed05cf8a3181548626032000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduVarious small fixes 2019-01-27 16:53:52 -05001c8cbc5fd82d3a7f38c0af631e370ed05cf8a318Various small fixeseditsrc/Meshing/Embedding/MesherInterface_Embedding.cppeditsrc/Meshing/XField1D/XField1D.cppeditsrc/Field/XFieldLine_ElementLocal.cppeditsrc/BasisFunction/ElementEdges.htest/unit/Meshing/Embedding/MesherInterface_Embedding_btest.cppb84aa962963988f62c416b6760ace4959d8a8a081548640037000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdated Embedding unit test for quadrature integration 2019-01-27 20:47:17 -0500b84aa962963988f62c416b6760ace4959d8a8a08Updated Embedding unit test for quadrature integrationedittest/unit/Meshing/Embedding/MesherInterface_Embedding_btest.cppsrc/pde/IBL/PDEIBLUniField.h485ecc5b4f6b6d74bab1151fd2c27be21f2e53981548640767000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduReverted to binary intermittency as default 2019-01-27 20:59:27 -0500485ecc5b4f6b6d74bab1151fd2c27be21f2e5398Reverted to binary intermittency as defaulteditsrc/pde/IBL/PDEIBLUniField.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_LineSearchNewton_btest.cppsrc/pde/IBL/PDEIBLUniField.hc9a694ecd971e2299f01f4bcdd2558b7640987dd1548688137000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRelaxed tolerance for intel compiler. Restored default to binary intermittency for existing tests 2019-01-28 10:08:57 -0500c9a694ecd971e2299f01f4bcdd2558b7640987ddRelaxed tolerance for intel compiler. Restored default to binary intermittency for existing testseditsrc/pde/IBL/PDEIBLUniField.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_LineSearchNewton_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBL_Panel_btest.cppdb5b95fa5d1cae5dc01187928ecb4932221562b71548699423000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRelaxed torleranc for gnu48 2019-01-28 13:17:03 -0500db5b95fa5d1cae5dc01187928ecb4932221562b7Relaxed torleranc for gnu48edittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBL_Panel_btest.cppsrc/pde/IBL/PDEIBLUniField.h54580f3eed332739bc86f30868def69023e6b02d1548702901000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded regularized point source to accommodate potential co-existence of free and forced transition in the captured transition treatment 2019-01-28 14:15:01 -050054580f3eed332739bc86f30868def69023e6b02dAdded regularized point source to accommodate potential co-existence of free and forced transition in the captured transition treatmenteditsrc/pde/IBL/PDEIBLUniField.htest/sandbox/Adapt3D_L2Project_MOESS_toy.cpp2777440f7e2e10c0b1f0b6665c7fa1287796e11d1548708006000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMinor fix 2019-01-28 15:40:06 -05002777440f7e2e10c0b1f0b6665c7fa1287796e11dMinor fixedittest/sandbox/Adapt3D_L2Project_MOESS_toy.cppsrc/Discretization/Galerkin/JacobianInteriorTrace_Galerkin_Param.hsrc/Field/XField_impl.htest/sandbox/Solve2D_DGAdvective_AD_RK_ParallelPeriodic_toy.cppfee2a8a93f1e2360a2adee3ed5795401ce4d687a1548784113000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixes towards parallel+periodic 2019-01-29 12:48:33 -0500fee2a8a93f1e2360a2adee3ed5795401ce4d687aFixes towards parallel+periodiceditsrc/Field/XField_impl.hedittest/sandbox/Solve2D_DGAdvective_AD_RK_ParallelPeriodic_toy.cppeditsrc/Discretization/Galerkin/JacobianInteriorTrace_Galerkin_Param.hgithttps://acdl.mit.edu/csi/user/pcaplanpcaplanhttps://acdl.mit.edu/csi/user/hcarsonhcarsonhttps://acdl.mit.edu/csi/user/eam5515eam5515https://acdl.mit.edu/csi/user/ursachiursachihttps://acdl.mit.edu/csi/user/kug46kug46https://acdl.mit.edu/csi/user/shunzshunzhttps://acdl.mit.edu/csi/user/arthuangarthuanghttps://acdl.mit.edu/csi/user/mlaroccamlaroccahttps://acdl.mit.edu/csi/user/galbramcgalbramchttps://acdl.mit.edu/csi/user/cfrontincfrontinhttps://acdl.mit.edu/csi/user/blscblschttps://acdl.mit.edu/csi/user/jzavalajzavalaStarted by upstream project "SANS_Weekly" build number 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ยป debug_intel19,reynolds #257257falsefalse257175860FAILURE1575701527163https://acdl.mit.edu/csi/job/SANS_Weekly/builddir=debug_intel19,buildnode=reynolds/257/reynoldstest/unit/Discretization/VMSDBR2/AlgebraicEquationSet_VMSDBR2_Triangle_AD_btest.cpptest/unit/Discretization/VMSDBR2/JacobianFunctionalBoundaryTrace_VMSDBR2_btest.cpp5fc4e65ff0cef9de7ef587ec32c7ee7917b1d7c21573757662000https://acdl.mit.edu/csi/user/arthuangarthuangarthuang@mit.eduunit tests for adjoint 2019-11-14 13:54:22 -05005fc4e65ff0cef9de7ef587ec32c7ee7917b1d7c2unit tests for adjointaddtest/unit/Discretization/VMSDBR2/JacobianFunctionalBoundaryTrace_VMSDBR2_btest.cppedittest/unit/Discretization/VMSDBR2/AlgebraicEquationSet_VMSDBR2_Triangle_AD_btest.cpptest/unit/IO/Adaptation/epic_script_NoGeom_2D.comtest/unit/IO/Adaptation/epic_script_GeomQ2_3D.comtest/unit/IO/Adaptation/epic_script_GeomQ1_3D.comsrc/Meshing/EPIC/MesherInterface_Epic.cpptest/unit/IO/Adaptation/epic_script_GeomQ1_2D.comtest/unit/IO/Adaptation/epic_script_GeomQ2_2D.comf619ff7a202caab000c42a454321d64bdf95a0f91574112330000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix for EPIC 2D without geometry 2019-11-18 16:25:30 -0500f619ff7a202caab000c42a454321d64bdf95a0f9Fix for EPIC 2D without geometryedittest/unit/IO/Adaptation/epic_script_GeomQ2_3D.comeditsrc/Meshing/EPIC/MesherInterface_Epic.cppedittest/unit/IO/Adaptation/epic_script_NoGeom_2D.comedittest/unit/IO/Adaptation/epic_script_GeomQ1_2D.comedittest/unit/IO/Adaptation/epic_script_GeomQ1_3D.comedittest/unit/IO/Adaptation/epic_script_GeomQ2_2D.comsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_impl.hsrc/Discretization/VMSDBR2/SetAdjointLO_VMSD_BR2.htest/unit/Discretization/VMSDBR2/JacobianFunctionalBoundaryTrace_VMSDBR2_btest.cpp22922d298f74f200b66b07a30281aca7668760491574202356000https://acdl.mit.edu/csi/user/arthuangarthuangarthuang@mit.eduadding block pivoting to ilu 2019-11-19 17:25:56 -050022922d298f74f200b66b07a30281aca766876049adding block pivoting to 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up potential flow 2018-05-13 11:06:42 -04008af37a9cc1806b6a846aa0f4b7ddd3c91b5d809eCleaning up potential 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instantiationeditsrc/pde/FullPotential/BCLinearizedIncompressiblePotential3D.cppedittest/unit/pde/FullPotential/LinearizedIncompressiblePotential3D_Trefftz_btest.cpptest/unit/Discretization/CG/ResidualParamSensitivity_CG_Triangle_AD_btest.cppsrc/LinearAlgebra/AlgebraicEquationSetBase.htest/system/Asymptotic/Adjoint2D_CG_Triangle_AD_btest.cppsrc/SolutionTrek/Continuation/Homotopy/AlgebraicEquationSet_HTC.htest/unit/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Triangle_AD_btest.cpptest/unit/Discretization/HDG/AlgebraicEquationSet_EDG_Triangle_AD_btest.cppsrc/SolutionTrek/Continuation/PseudoTime/AlgebraicEquationSet_PTC.htest/unit/Discretization/HDG/AlgebraicEquationSet_HDG_Triangle_AD_btest.cppsrc/Discretization/AlgebraicEquationSet_Debug.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized_LiftedBoundary.hsrc/Discretization/Block/AlgebraicEquationSet_Block4x4_impl.hsrc/Discretization/Block/AlgebraicEquationSet_Block4x4.hsrc/PanelMethod/XfoilPanelEquationSet.hsrc/Discretization/DG/AlgebraicEquationSet_Local_DG.hsrc/Discretization/HDG/AlgebraicEquationSet_HDG.htest/unit/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized_Triangle_AD_btest.cppsrc/Discretization/DG/AlgebraicEquationSet_Local_DG_impl.hsrc/SolutionTrek/TimeMarching/AlgebraicEquationSet_TimeMarch.hsrc/PanelMethod/AlgebraicEquationSet_ProjectToQauxi.hsrc/Discretization/Potential_Drela/AlgebraicEquationSet_CG_Potential_Drela.hsrc/PanelMethod/XfoilPanelEquationSet.cpptest/unit/LinearAlgebra/Advection1D_btest.hsrc/LinearAlgebra/VectorType.hsrc/Discretization/DG/AlgebraicEquationSet_DGBR2_impl.hsrc/SolutionTrek/TimeMarching/AlgebraicEquationSet_TimeStep.hsrc/LinearAlgebra/AlgebraicEquationSet_Traits.hsrc/Discretization/HDG/AlgebraicEquationSet_Local_HDG.htest/sandbox/Solve2D_CG_NACABTE_IPTF_toy.cppsrc/Discretization/Block/AlgebraicEquationSet_Block2x2_impl.hsrc/LinearAlgebra/SparseLinAlg/Preconditioners/LU_SGS_impl.hsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective_impl.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Project.hsrc/SolutionTrek/Continuation/ImplicitResidualSmoothing/AlgebraicEquationSet_IRS.hsrc/pde/IBL/AlgebraicEquationSet_ProjectToQauxv_PanelMethod.hsrc/Discretization/DG/AlgebraicEquationSet_DGBR2.hsrc/Discretization/FV_TPFA/AlgebraicEquationSet_FV_TPFA.htest/system/AnalyticSolve/AnalyticSolve2D_HDG_Triangle_NavierStokes_UniformStream_btest.cppsrc/Discretization/Galerkin/AlgebraicEquationSet_HubTrace_Galerkin.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized.hsrc/Discretization/Block/AlgebraicEquationSet_Block2x2.hsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.htest/sandbox/Solve2D_CG_NACA_IPTF_toy.cpptest/unit/LinearAlgebra/Heat1D_btest.htest/unit/Discretization/Block/AlgebraicEquationSet_Block2x2_Triangle_AD_btest.cppsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin.hsrc/SolutionTrek/Continuation/DissipationBased/AlgebraicEquationSet_DBC.hsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective.hf2dad7c7da8ebf344b9c56e025239afbf23742531526407343000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduChanged vectors to vector view in algebraic equation sets 2018-05-15 14:02:23 -0400f2dad7c7da8ebf344b9c56e025239afbf2374253Changed vectors to vector view in algebraic equation setseditsrc/Discretization/AlgebraicEquationSet_Debug.heditsrc/Discretization/Block/AlgebraicEquationSet_Block4x4.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized_LiftedBoundary.heditsrc/Discretization/FV_TPFA/AlgebraicEquationSet_FV_TPFA.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin.heditsrc/Discretization/HDG/AlgebraicEquationSet_Local_HDG.hedittest/unit/Discretization/HDG/AlgebraicEquationSet_EDG_Triangle_AD_btest.cppeditsrc/LinearAlgebra/SparseLinAlg/Preconditioners/LU_SGS_impl.heditsrc/Discretization/HDG/AlgebraicEquationSet_HDG.heditsrc/PanelMethod/XfoilPanelEquationSet.cppedittest/unit/LinearAlgebra/Heat1D_btest.heditsrc/LinearAlgebra/AlgebraicEquationSet_Traits.hedittest/system/Asymptotic/Adjoint2D_CG_Triangle_AD_btest.cppeditsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective.heditsrc/LinearAlgebra/AlgebraicEquationSetBase.heditsrc/PanelMethod/XfoilPanelEquationSet.heditsrc/Discretization/Potential_Drela/AlgebraicEquationSet_CG_Potential_Drela.heditsrc/SolutionTrek/Continuation/ImplicitResidualSmoothing/AlgebraicEquationSet_IRS.heditsrc/Discretization/Block/AlgebraicEquationSet_Block4x4_impl.hedittest/unit/Discretization/CG/ResidualParamSensitivity_CG_Triangle_AD_btest.cppedittest/sandbox/Solve2D_CG_NACABTE_IPTF_toy.cppeditsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.heditsrc/PanelMethod/AlgebraicEquationSet_ProjectToQauxi.hedittest/system/AnalyticSolve/AnalyticSolve2D_HDG_Triangle_NavierStokes_UniformStream_btest.cppeditsrc/Discretization/DG/AlgebraicEquationSet_DGBR2_impl.heditsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.heditsrc/pde/IBL/AlgebraicEquationSet_ProjectToQauxv_PanelMethod.heditsrc/Discretization/Block/AlgebraicEquationSet_Block2x2_impl.heditsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective_impl.heditsrc/Discretization/DG/AlgebraicEquationSet_DGBR2.hedittest/unit/Discretization/HDG/AlgebraicEquationSet_HDG_Triangle_AD_btest.cppedittest/unit/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Triangle_AD_btest.cppeditsrc/SolutionTrek/Continuation/DissipationBased/AlgebraicEquationSet_DBC.heditsrc/SolutionTrek/Continuation/Homotopy/AlgebraicEquationSet_HTC.hedittest/unit/LinearAlgebra/Advection1D_btest.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized.hedittest/unit/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized_Triangle_AD_btest.cppeditsrc/SolutionTrek/Continuation/PseudoTime/AlgebraicEquationSet_PTC.heditsrc/LinearAlgebra/VectorType.heditsrc/SolutionTrek/TimeMarching/AlgebraicEquationSet_TimeMarch.heditsrc/Discretization/Block/AlgebraicEquationSet_Block2x2.heditsrc/Discretization/DG/AlgebraicEquationSet_Local_DG_impl.hedittest/unit/Discretization/Block/AlgebraicEquationSet_Block2x2_Triangle_AD_btest.cppeditsrc/Discretization/Galerkin/AlgebraicEquationSet_Project.heditsrc/SolutionTrek/TimeMarching/AlgebraicEquationSet_TimeStep.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_HubTrace_Galerkin.hedittest/sandbox/Solve2D_CG_NACA_IPTF_toy.cppeditsrc/Discretization/DG/AlgebraicEquationSet_Local_DG.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixS_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/PETSc/PETSc_VectorSize_impl.htest/unit/LinearAlgebra/CustomJacobianEqSet_btest.ha1113b445be052542d575077835dc33be9226cc51526440390000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduPETSc updates with Vector View 2018-05-15 23:13:10 -0400a1113b445be052542d575077835dc33be9226cc5PETSc updates with Vector Vieweditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETSc_VectorSize_impl.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixS_Instantiate.cppedittest/unit/LinearAlgebra/CustomJacobianEqSet_btest.hsrc/LinearAlgebra/AlgebraicEquationSetBase.hsrc/Discretization/Block/JacobianParam_Decoupled.hsrc/SolutionTrek/Continuation/Homotopy/AlgebraicEquationSet_HTC.hsrc/SolutionTrek/Continuation/PseudoTime/AlgebraicEquationSet_PTC.hsrc/Discretization/AlgebraicEquationSet_Debug.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized_LiftedBoundary.hsrc/Discretization/JacobianParamBase.hsrc/Discretization/DG/AlgebraicEquationSet_Local_DG.hsrc/PanelMethod/XfoilPanelEquationSet.hsrc/PanelMethod/JacobianParam_PanelEqn_Qauxi.hsrc/Discretization/JacobianParam_impl.hsrc/Discretization/HDG/AlgebraicEquationSet_HDG.hsrc/Discretization/DG/AlgebraicEquationSet_Local_DG_impl.hsrc/SolutionTrek/TimeMarching/AlgebraicEquationSet_TimeMarch.hsrc/Discretization/Potential_Drela/AlgebraicEquationSet_CG_Potential_Drela.htest/unit/LinearAlgebra/Advection1D_btest.htest/unit/LinearAlgebra/CustomJacobianEqSet_btest.hsrc/Discretization/DG/AlgebraicEquationSet_DGBR2_impl.hsrc/LinearAlgebra/MatrixViewType.hsrc/SolutionTrek/TimeMarching/AlgebraicEquationSet_TimeStep.hsrc/LinearAlgebra/AlgebraicEquationSet_Traits.htest/sandbox/Solve2D_CG_NACABTE_IPTF_toy.cppsrc/Discretization/HDG/AlgebraicEquationSet_Local_HDG.hsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective_impl.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Project.hsrc/SolutionTrek/Continuation/ImplicitResidualSmoothing/AlgebraicEquationSet_IRS.hsrc/Discretization/DG/AlgebraicEquationSet_DGBR2.hsrc/Discretization/Galerkin/AlgebraicEquationSet_HubTrace_Galerkin.hsrc/Discretization/FV_TPFA/AlgebraicEquationSet_FV_TPFA.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized.hsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.htest/sandbox/Solve2D_CG_NACA_IPTF_toy.cppsrc/pde/IBL/JacobianParam_ProjectToQauxi_Qauxv.hsrc/Discretization/JacobianParam_Local.htest/unit/LinearAlgebra/Heat1D_btest.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.hsrc/pde/IBL/JacobianParam_ProjectToQauxi_QIBL.hsrc/pde/IBL/JacobianParam_ProjectToQauxv_Qinv.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin.hsrc/Discretization/JacobianParam.hsrc/SolutionTrek/Continuation/DissipationBased/AlgebraicEquationSet_DBC.hsrc/LinearAlgebra/NonZeroPatternType.hsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective.h8502974746daa38bb633635c44a61fbb9dcf63a01526519102000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdated Matrix View for algebraic equation sets as well 2018-05-16 21:05:02 -04008502974746daa38bb633635c44a61fbb9dcf63a0Updated Matrix View for algebraic equation sets as welleditsrc/SolutionTrek/Continuation/ImplicitResidualSmoothing/AlgebraicEquationSet_IRS.heditsrc/Discretization/JacobianParam_impl.heditsrc/pde/IBL/JacobianParam_ProjectToQauxi_Qauxv.heditsrc/Discretization/DG/AlgebraicEquationSet_DGBR2.heditsrc/Discretization/JacobianParam_Local.heditsrc/Discretization/Block/JacobianParam_Decoupled.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized_LiftedBoundary.heditsrc/pde/IBL/JacobianParam_ProjectToQauxi_QIBL.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Project.hedittest/unit/LinearAlgebra/Heat1D_btest.heditsrc/Discretization/HDG/AlgebraicEquationSet_HDG.heditsrc/Discretization/DG/AlgebraicEquationSet_Local_DG.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_HubTrace_Galerkin.heditsrc/Discretization/AlgebraicEquationSet_Debug.heditsrc/SolutionTrek/Continuation/DissipationBased/AlgebraicEquationSet_DBC.heditsrc/PanelMethod/XfoilPanelEquationSet.hedittest/sandbox/Solve2D_CG_NACA_IPTF_toy.cppeditsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective.heditsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective_impl.heditsrc/pde/IBL/JacobianParam_ProjectToQauxv_Qinv.heditsrc/SolutionTrek/Continuation/Homotopy/AlgebraicEquationSet_HTC.hedittest/sandbox/Solve2D_CG_NACABTE_IPTF_toy.cppeditsrc/Discretization/JacobianParam.heditsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.hedittest/unit/LinearAlgebra/CustomJacobianEqSet_btest.heditsrc/Discretization/DG/AlgebraicEquationSet_DGBR2_impl.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin.heditsrc/LinearAlgebra/AlgebraicEquationSet_Traits.heditsrc/SolutionTrek/TimeMarching/AlgebraicEquationSet_TimeMarch.heditsrc/LinearAlgebra/AlgebraicEquationSetBase.heditsrc/Discretization/HDG/AlgebraicEquationSet_Local_HDG.heditsrc/LinearAlgebra/NonZeroPatternType.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized.hedittest/unit/LinearAlgebra/Advection1D_btest.heditsrc/Discretization/JacobianParamBase.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.heditsrc/SolutionTrek/TimeMarching/AlgebraicEquationSet_TimeStep.heditsrc/Discretization/DG/AlgebraicEquationSet_Local_DG_impl.heditsrc/Discretization/Potential_Drela/AlgebraicEquationSet_CG_Potential_Drela.heditsrc/PanelMethod/JacobianParam_PanelEqn_Qauxi.heditsrc/Discretization/FV_TPFA/AlgebraicEquationSet_FV_TPFA.haddsrc/LinearAlgebra/MatrixViewType.heditsrc/SolutionTrek/Continuation/PseudoTime/AlgebraicEquationSet_PTC.hsrc/UserInterfaces/capsAIM/CMakeLists.txtb9e65fec20824ecee7dc941092c4d5e2357600a21526740267000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMinimize dependencies for LIP aim 2018-05-19 10:31:07 -0400b9e65fec20824ecee7dc941092c4d5e2357600a2Minimize dependencies for LIP aimeditsrc/UserInterfaces/capsAIM/CMakeLists.txtsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_impl.hsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_factorize.hsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver.hsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver.cpptest/unit/LinearAlgebra/SparseLinAlg/LinearSolver_btest.cppbfa106832b329fa5bca39c0aefbdbfaade013b881526860269000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded timings for UMFPACK 2018-05-20 19:51:09 -0400bfa106832b329fa5bca39c0aefbdbfaade013b88Added timings for UMFPACKeditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_impl.heditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver.heditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_factorize.heditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver.cppedittest/unit/LinearAlgebra/SparseLinAlg/LinearSolver_btest.cppsrc/UserInterfaces/LIPSolver.hsrc/UserInterfaces/capsAIM/sansLIPAIM.cppsrc/UserInterfaces/LIPSolver.cpp615773e647c71e4da57ed3f7b2958098290179511526869396000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpates to sensitvity calculations 2018-05-20 22:23:16 -0400615773e647c71e4da57ed3f7b295809829017951Upates to sensitvity calculationseditsrc/UserInterfaces/LIPSolver.heditsrc/UserInterfaces/capsAIM/sansLIPAIM.cppeditsrc/UserInterfaces/LIPSolver.cppgithttps://acdl.mit.edu/csi/user/galbramcgalbramcStarted by upstream project "SANS_Weekly" build number 233233SANS_Weeklyjob/SANS_Weekly/4490829testReportfalse#2334460410838115651SANS_Weekly ยป release_intel18,reynolds #233233falsefalse23354995FAILURE1549090327511https://acdl.mit.edu/csi/job/SANS_Weekly/builddir=release_intel18,buildnode=reynolds/233/reynoldssrc/pde/NS/PDEEulermitAVDiffusion2D.h7f3962937dca65f62e24ab2971167effad3c2f461527729868000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduAdded H tensor output from Euler2D 2018-05-30 19:24:28 -06007f3962937dca65f62e24ab2971167effad3c2f46Added H tensor output from Euler2Deditsrc/pde/NS/PDEEulermitAVDiffusion2D.hsrc/Meshing/EGTess/EGTessModel_aflr4.cppsrc/Meshing/AFLR/AFLR3.cppCMakeInclude/Finds/FindAFLR.cmakeCMakeInclude/Checks/aflr_test.cxxf563c698756c6eb1123706467837afef009acb811528223924000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduWorking on new AFLR4 interface 2018-06-05 14:38:44 -0400f563c698756c6eb1123706467837afef009acb81Working on new AFLR4 interfaceeditCMakeInclude/Finds/FindAFLR.cmakeeditsrc/Meshing/EGTess/EGTessModel_aflr4.cppeditCMakeInclude/Checks/aflr_test.cxxeditsrc/Meshing/AFLR/AFLR3.cpptest/sandbox/Adapt2D_DGBR2_RANSSA_FlatPlate_toy.cppe3d6dcdca580abc7320871f3f0535c49af8552f91528315219000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edusome tweaks 2018-06-06 16:00:19 -0400e3d6dcdca580abc7320871f3f0535c49af8552f9some tweaksedittest/sandbox/Adapt2D_DGBR2_RANSSA_FlatPlate_toy.cpptest/sandbox/Adapt2D_DGBR2_RANSSA_FlatPlate_toy.cpp1d263e2d966af7879c27dd8104b6fb504cb23a521528476379000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edutweaks 2018-06-08 12:46:19 -04001d263e2d966af7879c27dd8104b6fb504cb23a52tweaksedittest/sandbox/Adapt2D_DGBR2_RANSSA_FlatPlate_toy.cppsrc/Meshing/EGTess/EGTessModel_aflr4.cppCMakeInclude/Finds/FindAFLR.cmaketest/unit/Meshing/AFLR/AFLR3_btest.cpp15c1426999d0a1fcd00aa998222a55f83d7563921528550125000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduDebugging AFLR4 2018-06-09 09:15:25 -040015c1426999d0a1fcd00aa998222a55f83d756392Debugging AFLR4editCMakeInclude/Finds/FindAFLR.cmakeedittest/unit/Meshing/AFLR/AFLR3_btest.cppeditsrc/Meshing/EGTess/EGTessModel_aflr4.cpptest/sandbox/Adapt2D_DGBR2_RANSSA_FlatPlate_toy.cppfe60e7318129b134c60ac70155aeafbbd68246a31528806539000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduremoving erroneous refine things 2018-06-12 08:28:59 -0400fe60e7318129b134c60ac70155aeafbbd68246a3removing erroneous refine thingsedittest/sandbox/Adapt2D_DGBR2_RANSSA_FlatPlate_toy.cppCMakeInclude/Finds/FindEGADS.cmakeCMakeInclude/Builds/BuildPETSC.cmakeCMakeInclude/Checks/CheckREFINE.cmakeCMakeInclude/Dependencies.cmakeCMakeInclude/Finds/FindREFINE.cmakeCMakeInclude/Builds/BuildREFINE.cmake149f12134ba4ae56cb1c90611a686a7645d1634a1528806754000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edugetting acdl develop CMakeIncludes 2018-06-12 08:32:34 -0400149f12134ba4ae56cb1c90611a686a7645d1634agetting acdl develop CMakeIncludeseditCMakeInclude/Finds/FindEGADS.cmakeeditCMakeInclude/Finds/FindREFINE.cmakeeditCMakeInclude/Builds/BuildPETSC.cmakeeditCMakeInclude/Checks/CheckREFINE.cmakeeditCMakeInclude/Dependencies.cmakeaddCMakeInclude/Builds/BuildREFINE.cmaketest/sandbox/Adapt2D_DGBR2_RANSSA_FlatPlate_toy.cppe8817adf58fd1b1900ba67411c23a90c29f506ed1528806774000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumore tweaks 2018-06-12 08:32:54 -0400e8817adf58fd1b1900ba67411c23a90c29f506edmore tweaksedittest/sandbox/Adapt2D_DGBR2_RANSSA_FlatPlate_toy.cpptest/sandbox/Adapt2D_DGBR2_RANSSA_FlatPlate_toy.cpp24ab416a6e823de9d76befd21443874de39d5af51528809937000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumoving to hypersonic 2018-06-12 09:25:37 -040024ab416a6e823de9d76befd21443874de39d5af5moving to hypersonicedittest/sandbox/Adapt2D_DGBR2_RANSSA_FlatPlate_toy.cpptest/sandbox/Adapt2D_DGBR2_RANSSA_FlatPlate_toy.cppe3ebb3f0c7041824d057390be8b49f592256da9b1528810548000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educhange to let MPI build the directories just in time 2018-06-12 09:35:48 -0400e3ebb3f0c7041824d057390be8b49f592256da9bchange to let MPI build the directories just in timeedittest/sandbox/Adapt2D_DGBR2_RANSSA_FlatPlate_toy.cpptest/sandbox/Adapt2D_DGBR2_RANSSA_FlatPlate_toy.cppe154e5e008c88eb1e3de7b12e15c325a4c3ed8a11528810617000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edutoo many white lines 2018-06-12 09:36:57 -0400e154e5e008c88eb1e3de7b12e15c325a4c3ed8a1too many white linesedittest/sandbox/Adapt2D_DGBR2_RANSSA_FlatPlate_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cpptest/sandbox/Adapt2D_DGBR2_NavierStokes_FlatPlate_toy.cppb568d38fe85cb10fc568afee34dede845dc19d1f1528911117000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduto run on devastator 2018-06-13 13:31:57 -0400b568d38fe85cb10fc568afee34dede845dc19d1fto run on devastatoredittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cppedittest/sandbox/Adapt2D_DGBR2_NavierStokes_FlatPlate_toy.cpptest/sandbox/Adapt2D_DGBR2_RANSSA_FlatPlate_toy.cppda90675f4de25ffa8af9024887f3e09c88b90aaf1528912274000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edutweaks for hypersonic 2018-06-13 13:51:14 -0400da90675f4de25ffa8af9024887f3e09c88b90aaftweaks for hypersonicedittest/sandbox/Adapt2D_DGBR2_RANSSA_FlatPlate_toy.cpptest/unit/ErrorEstimate/ErrorEstimateNodal_Galerkin_AD_btest.cppsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.hsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.hbdb26494c805be76f547a3b8ef3201513517fcca1528920236000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduNodal Error estimate. Takes the average of the attached nodes, the estimation happens using the weak form directly 2018-06-13 16:03:56 -0400bdb26494c805be76f547a3b8ef3201513517fccaNodal Error estimate. Takes the average of the attached nodes, the estimation happens using the weak form directlyaddtest/unit/ErrorEstimate/ErrorEstimateNodal_Galerkin_AD_btest.cppaddsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.haddsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized.hsrc/ErrorEstimate/ErrorEstimate_fwd.hsrc/Adaptation/MOESS/SolverInterface_Nodal_Galerkin.htest/sandbox/Adapt2D_Galerkin_Stabilized_Poisson_toy.cpp6bd3507494944f1bc8e9189e18d10ec7b6beb22b1528921870000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduhacking about trying Nodal Estimation 2018-06-13 16:31:10 -04006bd3507494944f1bc8e9189e18d10ec7b6beb22bhacking about trying Nodal Estimationeditsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized.haddsrc/Adaptation/MOESS/SolverInterface_Nodal_Galerkin.heditsrc/ErrorEstimate/ErrorEstimate_fwd.hedittest/sandbox/Adapt2D_Galerkin_Stabilized_Poisson_toy.cppsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.h38318eea3f13e2271f889851b661ce1f7129acfd1528978461000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edutypo/bug maybe? 2018-06-14 08:14:21 -040038318eea3f13e2271f889851b661ce1f7129acfdtypo/bug maybe?editsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.hsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.hf45684f9b62753b8e189a5fb336f9de627884a581528979615000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduanother one 2018-06-14 08:33:35 -0400f45684f9b62753b8e189a5fb336f9de627884a58another oneeditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.hsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.htest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppsrc/Adaptation/MOESS/SolverInterface.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.htest/sandbox/Adapt2D_Galerkin_Stabilized_Poisson_toy.cppsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.h7a05e1017aadf78f6d7439e462cbc4122c28d7721528995664000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edupre merge 2018-06-14 13:01:04 -04007a05e1017aadf78f6d7439e462cbc4122c28d772pre mergeeditsrc/Adaptation/MOESS/SolverInterface.hedittest/sandbox/Adapt2D_Galerkin_Stabilized_Poisson_toy.cppeditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.heditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.hedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppeditsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.htest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cpp30fd8d2a1b83df1b3ad1fabcae4762ca688fe92b1529058570000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduMultiscale metric case, debugging printing a continuous Mach number field 2018-06-15 06:29:30 -040030fd8d2a1b83df1b3ad1fabcae4762ca688fe92bMultiscale metric case, debugging printing a continuous Mach number fieldaddtest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppsrc/ErrorEstimate/Galerkin/ErrorEstimate_StrongForm_Galerkin.hsrc/Adaptation/MOESS/SolverInterface_DGAdvective.h035379d445956a947ba072e91d14f0c913b052e01529058767000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edupre merge 2018-06-15 06:32:47 -0400035379d445956a947ba072e91d14f0c913b052e0pre mergeeditsrc/Adaptation/MOESS/SolverInterface_DGAdvective.heditsrc/ErrorEstimate/Galerkin/ErrorEstimate_StrongForm_Galerkin.htest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cpp72733f21df4a27dd02c08dc6ffbfac23983370781529071695000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduforgot to assert the basis was the same for the two fields 2018-06-15 10:08:15 -040072733f21df4a27dd02c08dc6ffbfac2398337078forgot to assert the basis was the same for the two fieldsedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppa0d695ca843c7ef57a820f10ef4c48f88aedfb9f1529072425000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduprojects from the Dfld basis onto the Cfld basis so accumulating to the dofs is consistent now 2018-06-15 10:20:25 -0400a0d695ca843c7ef57a820f10ef4c48f88aedfb9fprojects from the Dfld basis onto the Cfld basis so accumulating to the dofs is consistent nowedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppsrc/ErrorEstimate/Galerkin/ErrorEstimate_StrongForm_Galerkin.h3b0d3d2ab172a45fd51a8a5a132a9f80ea5161c41529241229000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edupre merge 2018-06-17 09:13:49 -04003b0d3d2ab172a45fd51a8a5a132a9f80ea5161c4pre mergeeditsrc/ErrorEstimate/Galerkin/ErrorEstimate_StrongForm_Galerkin.htest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cpp84e3b4954944a4814ca80a8a62ee96e288ccc0311529242304000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduseems to write Mach number solbs now 2018-06-17 09:31:44 -040084e3b4954944a4814ca80a8a62ee96e288ccc031seems to write Mach number solbs nowedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cpp932b952e1c67742c5192e0f41a6c142bac336b8e1529242813000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumoving to hypersonic 2018-06-17 09:40:13 -0400932b952e1c67742c5192e0f41a6c142bac336b8emoving to hypersonicedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.h4c97e7280c8f85b8ed87fa36c6adf6b9a3dc74061529243111000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edua fix to go to hypersonic 2018-06-17 09:45:11 -04004c97e7280c8f85b8ed87fa36c6adf6b9a3dc7406a fix to go to hypersoniceditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.htest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppe00fe2c429f1521d6d59f682599d840ab640cc931529266046000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduweird tecplot bug 2018-06-17 16:07:26 -0400e00fe2c429f1521d6d59f682599d840ab640cc93weird tecplot bugedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.hsrc/Adaptation/MOESS/SolverInterface_Nodal_Galerkin.htest/sandbox/Adapt2D_Galerkin_Stabilized_Poisson_toy.cppsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.h8719f043d911c5ab1b744fdc0ba472ae0bda8c2d1529353060000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educompiles again, moving to devastator 2018-06-18 16:17:40 -04008719f043d911c5ab1b744fdc0ba472ae0bda8c2dcompiles again, moving to devastatoreditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.heditsrc/Adaptation/MOESS/SolverInterface_Nodal_Galerkin.heditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.hedittest/sandbox/Adapt2D_Galerkin_Stabilized_Poisson_toy.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cpp05a545a4edd487cff6c5fea07138534e8d8066f31529422055000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduMultiScaleMetric for transfering to NASA 2018-06-19 11:27:35 -040005a545a4edd487cff6c5fea07138534e8d8066f3MultiScaleMetric for transfering to NASAedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cpp61db27fc494c3ce64ab6a5327dc0cd606f8bf2ca1529442509000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumoving to laptop 2018-06-19 17:08:29 -040061db27fc494c3ce64ab6a5327dc0cd606f8bf2camoving to laptopedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.hsrc/Adaptation/MOESS/SolverInterface.hsrc/Adaptation/MOESS/SolverInterface_Nodal_Galerkin.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.hsrc/Adaptation/MOESS/SolverInterface_Galerkin.hsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.hbe2a3ebb3aaa5fee74c75b15a1e1c2613c906b9a1529605048000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edutransfering to Dev 2018-06-21 14:17:28 -0400be2a3ebb3aaa5fee74c75b15a1e1c2613c906b9atransfering to Deveditsrc/Adaptation/MOESS/SolverInterface.heditsrc/Adaptation/MOESS/SolverInterface_Galerkin.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.heditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.heditsrc/Adaptation/MOESS/SolverInterface_Nodal_Galerkin.heditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.htest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cpp9dee96b28f96678614a38687df0a02c129730c741529680015000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumoving to devastator to get EPIC 2018-06-22 11:06:55 -04009dee96b28f96678614a38687df0a02c129730c74moving to devastator to get EPICedittest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cppd7c8f8f1f63dd1901d6b4552581e8c67087c86851529680692000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edu--ammend 2018-06-22 11:18:12 -0400d7c8f8f1f63dd1901d6b4552581e8c67087c8685--ammendedittest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_DGBR2_NavierStokes_FlatPlate_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cpp2c986ae8f4402c9d0d4e3931c7886c248de14ac31529931279000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumoving to devastator 2018-06-25 08:54:39 -04002c986ae8f4402c9d0d4e3931c7886c248de14ac3moving to devastatoredittest/sandbox/Adapt2D_DGBR2_NavierStokes_FlatPlate_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AR_toy.cpptest/sandbox/Adapt2D_DGBR2_AR_toy.cpp0e97ee7e6dad848170ea518e82fccd59cc4d66de1529963000000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edutransfering to dev 2018-06-25 17:43:20 -04000e97ee7e6dad848170ea518e82fccd59cc4d66detransfering to devedittest/sandbox/Adapt2D_DGBR2_AR_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_AR_toy.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cpp49fed73db0978a9f2a61001256afceba2c8246131529965150000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumoving to hyper 2018-06-25 18:19:10 -040049fed73db0978a9f2a61001256afceba2c824613moving to hyperedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.hsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.h0b8da3b00e2c6ecd3fbb5da7d3698758247706061530039441000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edupre merge 2018-06-26 14:57:21 -04000b8da3b00e2c6ecd3fbb5da7d369875824770606pre mergeaddsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.haddsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.htest/sandbox/Adapt2D_Galerkin_Stabilized_Poisson_toy.cpp70720469eb43e18494b12692dc72d2fe968c62331530043906000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edutweak 2018-06-26 16:11:46 -040070720469eb43e18494b12692dc72d2fe968c6233tweakedittest/sandbox/Adapt2D_Galerkin_Stabilized_Poisson_toy.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cpp45c60790f9a85aa0919cad104252dcc0fecea60e1530102339000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduadded output dump info to MultiScaleMetric case, should be ready to really run cases now 2018-06-27 08:25:39 -040045c60790f9a85aa0919cad104252dcc0fecea60eadded output dump info to MultiScaleMetric case, should be ready to really run cases nowedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppbbb9cd11b692f19d2a6226c85d813cc688d164881530104301000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumaking MultiScale and MOESS cases consistent and ready for hypersonic 2018-06-27 08:58:21 -0400bbb9cd11b692f19d2a6226c85d813cc688d16488making MultiScale and MOESS cases consistent and ready for hypersonicedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cpp9f39bc616ba2dff4494c5d9a71e418c71a9ed69d1530215555000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edutweaks back to labbox 2018-06-28 15:52:35 -04009f39bc616ba2dff4494c5d9a71e418c71a9ed69dtweaks back to labboxedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppsrc/Meshing/EGTess/CMakeLists.txtsrc/Meshing/EGTess/EGTessModel.cppsrc/Meshing/EGTess/EGTessModel_aflr4.cppsrc/Meshing/EGTess/EGTessModel.htest/unit/Meshing/AFLR/AFLR3_btest.cppsrc/UserInterfaces/capsAIM/sansLIPAIM.cppCMakeInclude/Finds/FindAFLR.cmakec3ca25793b78eb6b709507aa7f2ed45f47f54c941530498418000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdates for edge based AFLR4 calculations 2018-07-01 22:26:58 -0400c3ca25793b78eb6b709507aa7f2ed45f47f54c94Updates for edge based AFLR4 calculationsedittest/unit/Meshing/AFLR/AFLR3_btest.cppeditsrc/Meshing/EGTess/EGTessModel.heditsrc/UserInterfaces/capsAIM/sansLIPAIM.cppeditsrc/Meshing/EGTess/CMakeLists.txteditsrc/Meshing/EGTess/EGTessModel.cppeditCMakeInclude/Finds/FindAFLR.cmakeeditsrc/Meshing/EGTess/EGTessModel_aflr4.cpptest/unit/UnitGrids/XField2D_BackwardsStep_X1.cpptest/unit/UnitGrids/XField2D_BackwardsStep_X1.htest/unit/UnitGrids/XField2D_BackwardsStep_X1_btest.cppa37c2f08feadeb98da3a12397f96d4ac9b0a9ff71530539289000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduBackwards facing step unit grid 2018-07-02 09:48:09 -0400a37c2f08feadeb98da3a12397f96d4ac9b0a9ff7Backwards facing step unit gridaddtest/unit/UnitGrids/XField2D_BackwardsStep_X1.haddtest/unit/UnitGrids/XField2D_BackwardsStep_X1.cppaddtest/unit/UnitGrids/XField2D_BackwardsStep_X1_btest.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cpptest/sandbox/Adapt2D_DGBR2_AR_toy.cpp7ecdbd66d49e88aa228cb3228f56c2ba6523a5ca1530618968000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edupre merge commit 2018-07-03 07:56:08 -04007ecdbd66d49e88aa228cb3228f56c2ba6523a5capre merge commitedittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cppedittest/sandbox/Adapt2D_DGBR2_AR_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_BackwardsStep_toy.cpptest/unit/UnitGrids/XField2D_BackwardsStep_X1.cpptest/sandbox/Adapt2D_DGBR2_NavierStokes_BackwardsStep_toy.cpp58012bd086a5334c5a63d655bad2af6120965df51530794715000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edubackwards step cases 2018-07-05 08:45:15 -040058012bd086a5334c5a63d655bad2af6120965df5backwards step casesaddtest/sandbox/Adapt2D_DGBR2_NavierStokes_BackwardsStep_toy.cppaddtest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_BackwardsStep_toy.cppedittest/unit/UnitGrids/XField2D_BackwardsStep_X1.cppsrc/Adaptation/MOESS/SolverInterface_Nodal_Galerkin.htest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_BackwardsStep_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppsrc/Adaptation/MOESS/SolverInterface_Galerkin.htest/sandbox/Adapt2D_Galerkin_Stabilized_Poisson_toy.cpped3e89c28ef2002881a5c6e55a694e45fad52e571530794979000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduremoved SolverInterface_Nodal_Galerkin, it ended up only a tiny tweak from SolverInterface_Galerkin, so changed that instead 2018-07-05 08:49:39 -0400ed3e89c28ef2002881a5c6e55a694e45fad52e57removed SolverInterface_Nodal_Galerkin, it ended up only a tiny tweak from SolverInterface_Galerkin, so changed that insteadedittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_BackwardsStep_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppeditsrc/Adaptation/MOESS/SolverInterface_Galerkin.hdeletesrc/Adaptation/MOESS/SolverInterface_Nodal_Galerkin.hedittest/sandbox/Adapt2D_Galerkin_Stabilized_Poisson_toy.cppsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized.h906f6d11ef5df82d946710f3d6a0c8cc62c2b7951530795022000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduadded options for tweaking order of the tau stabilization. Can force the stabilization to be at a different polynomial order than the actual solve now 2018-07-05 08:50:22 -0400906f6d11ef5df82d946710f3d6a0c8cc62c2b795added options for tweaking order of the tau stabilization. Can force the stabilization to be at a different polynomial order than the actual solve noweditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized.hsrc/Discretization/Galerkin/Stabilization_Galerkin.h1361847ed20601e19a38e924cd0bc6a3901717de1530795044000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduadded Arthur's version of Experimental, copied from his email 2018-07-05 08:50:44 -04001361847ed20601e19a38e924cd0bc6a3901717deadded Arthur's version of Experimental, copied from his emaileditsrc/Discretization/Galerkin/Stabilization_Galerkin.hsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.hsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.h13352d56befb03823e4359cfe83a217ca1d29a411530795092000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edupreprocessor defined version with volume weighting, ought to remove this later 2018-07-05 08:51:32 -040013352d56befb03823e4359cfe83a217ca1d29a41preprocessor defined version with volume weighting, ought to remove this latereditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.heditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.htest/unit/UnitGrids/CMakeLists.txtc7c134b32d59ba4f02e79714151e2e9c92ceb9221530795122000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduforgot the CMakeLists 2018-07-05 08:52:02 -0400c7c134b32d59ba4f02e79714151e2e9c92ceb922forgot the CMakeListsedittest/unit/UnitGrids/CMakeLists.txttest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_DGBR2_NavierStokes_BackwardsStep_toy.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppc8a4da063c414a477de645fbf9f5db0f2c60076d1530795782000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduDG case updates 2018-07-05 09:03:02 -0400c8a4da063c414a477de645fbf9f5db0f2c60076dDG case updatesedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppedittest/sandbox/Adapt2D_DGBR2_NavierStokes_BackwardsStep_toy.cppedittest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cpptest/unit/ErrorEstimate/ErrorEstimateNodal_Galerkin_AD_btest.cppsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.ha1ac28ffe154070a54d679b5cefb4303230340a91530796898000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edunodal test passes again 2018-07-05 09:21:38 -0400a1ac28ffe154070a54d679b5cefb4303230340a9nodal test passes againedittest/unit/ErrorEstimate/ErrorEstimateNodal_Galerkin_AD_btest.cppeditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.htest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cppafcfabff1f843aaf4375c9fe0ae3191079fc54ee1530796986000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edupre merge 2018-07-05 09:23:06 -0400afcfabff1f843aaf4375c9fe0ae3191079fc54eepre mergeedittest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_BackwardsStep_toy.cpptest/unit/UnitGrids/XField2D_BackwardsStep_X1.cpptest/sandbox/Adapt2D_DGBR2_NavierStokes_BackwardsStep_toy.cpp706d8762af75aaef77969181b7a14c8bd449b1f61530876886000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumoving back to nia 2018-07-06 07:34:46 -0400706d8762af75aaef77969181b7a14c8bd449b1f6moving back to niaedittest/sandbox/Adapt2D_DGBR2_NavierStokes_BackwardsStep_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_BackwardsStep_toy.cppedittest/unit/UnitGrids/XField2D_BackwardsStep_X1.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.hsrc/Adaptation/MOESS/SolverInterface_Galerkin.h6a1b4da6a4ac51ed23da2e3d9e959d608dc7cf051530879390000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumoving to dev 2018-07-06 08:16:30 -04006a1b4da6a4ac51ed23da2e3d9e959d608dc7cf05moving to devedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppeditsrc/Adaptation/MOESS/SolverInterface_Galerkin.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.htest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cppba34b324e3e2ff17220164a5146319fb2135c6491530879730000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edutweaks to case 2018-07-06 08:22:10 -0400ba34b324e3e2ff17220164a5146319fb2135c649tweaks to caseedittest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/unit/pde/IBL/BCIBL2D_btest.cppsrc/pde/IBL/PDEIBL2D.htest/unit/pde/IBL/PDEIBL2D_btest.cppsrc/pde/IBL/PDEIBLUniField.hsrc/pde/IBL/SpaldingLawModified_Instantiate.cppsrc/pde/IBL/BCIBL2D.hsrc/PanelMethod/FunctionEvalQauxv_IBL.hsrc/pde/IBL/VarInterpret2D.hsrc/pde/IBL/IBL_Traits.h45153f0a7ba1bdc2266e9f2c28951f1b912bb83c1531161706000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduStarted a single-field IBL formulation 2018-07-09 14:41:46 -040045153f0a7ba1bdc2266e9f2c28951f1b912bb83cStarted a single-field IBL formulationeditsrc/PanelMethod/FunctionEvalQauxv_IBL.haddsrc/pde/IBL/PDEIBLUniField.heditsrc/pde/IBL/BCIBL2D.heditsrc/pde/IBL/IBL_Traits.heditsrc/pde/IBL/PDEIBL2D.heditsrc/pde/IBL/VarInterpret2D.hedittest/unit/pde/IBL/BCIBL2D_btest.cppedittest/unit/pde/IBL/PDEIBL2D_btest.cppeditsrc/pde/IBL/SpaldingLawModified_Instantiate.cppsrc/PanelMethod/FunctionEvalQauxv_IBL.h1c72d657634718914141a0964cda98731afefd771531164722000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduBug fix 2018-07-09 15:32:02 -04001c72d657634718914141a0964cda98731afefd77Bug fixeditsrc/PanelMethod/FunctionEvalQauxv_IBL.hsrc/pde/IBL/IBLMiscClosures.hsrc/pde/IBL/VarInterpret2D.hsrc/pde/IBL/PDEIBL2D.hsrc/pde/IBL/PDEIBLUniField.hsrc/pde/IBL/IBLVarDataType2D.h65fe3df4a909b9da8009c2c31d1cdd34daf108de1531187707000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded PDEIBL class in a single-field formulation 2018-07-09 21:55:07 -040065fe3df4a909b9da8009c2c31d1cdd34daf108deAdded PDEIBL class in a single-field formulationeditsrc/pde/IBL/VarInterpret2D.heditsrc/pde/IBL/PDEIBLUniField.haddsrc/pde/IBL/IBLMiscClosures.heditsrc/pde/IBL/PDEIBL2D.heditsrc/pde/IBL/IBLVarDataType2D.hsrc/pde/IBL/PDEIBLUniField.h3607abc97e4e97e55371ad9bc3fca20bbe431efd1531228087000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed compiler errors 2018-07-10 09:08:07 -04003607abc97e4e97e55371ad9bc3fca20bbe431efdFixed compiler errorseditsrc/pde/IBL/PDEIBLUniField.hsrc/Discretization/Galerkin/IntegrandBoundaryTrace_WakeMatch_Galerkin_IBL.hsrc/pde/IBL/SecondaryVar2D.cppsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppsrc/pde/IBL/PDEIBL2D.hsrc/pde/IBL/PDEIBLUniField.cppsrc/pde/IBL/SetSolnDofCell_IBL2D.hsrc/pde/IBL/BCIBL2D.hsrc/pde/IBL/CMakeLists.txttest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBLUniField_NACA0004_LamiBL_btest.cppsrc/pde/IBL/IBL_Traits.hsrc/pde/IBL/BCIBLUniField.hsrc/pde/IBL/PDEIBLUniField.hsrc/pde/IBL/ElementProjectionIBLoutput_L2.hsrc/pde/IBL/SpaldingLawModified_Instantiate.cpptest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne64_a0_unifield.txtsrc/pde/IBL/VarInterpret2D.hsrc/pde/IBL/BCIBL2D.cppsrc/pde/IBL/BCIBLUniField.cpp2dfc64cc497d03f299b8c68923fca6f5836e85801531242577000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduCompleted UniField IBL uncoupled case of laminar BL over airfoil 2018-07-10 13:09:37 -04002dfc64cc497d03f299b8c68923fca6f5836e8580Completed UniField IBL uncoupled case of laminar BL over airfoileditsrc/pde/IBL/BCIBL2D.cppeditsrc/pde/IBL/PDEIBLUniField.heditsrc/pde/IBL/VarInterpret2D.haddsrc/pde/IBL/BCIBLUniField.heditsrc/Discretization/Galerkin/IntegrandBoundaryTrace_WakeMatch_Galerkin_IBL.heditsrc/pde/IBL/ElementProjectionIBLoutput_L2.heditsrc/pde/IBL/BCIBL2D.heditsrc/pde/IBL/PDEIBL2D.heditsrc/pde/IBL/SpaldingLawModified_Instantiate.cppeditsrc/pde/IBL/IBL_Traits.haddsrc/pde/IBL/BCIBLUniField.cppeditsrc/pde/IBL/SecondaryVar2D.cppeditsrc/pde/IBL/CMakeLists.txtaddsrc/pde/IBL/PDEIBLUniField.cppaddtest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBLUniField_NACA0004_LamiBL_btest.cppaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne64_a0_unifield.txteditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppeditsrc/pde/IBL/SetSolnDofCell_IBL2D.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeIBL3eqmClosure_btest.cpptest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBL_turbulentWakeibl3eqm_naca0004_ne64_p1_TestNew.txttest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBL_turbulentWakeibl3eqm_naca0004_ne64_p1_Test.txt521b4b5b3760fbc75e7504ecbad210b3fbcb72a01531246098000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduJust file renaming 2018-07-10 14:08:18 -0400521b4b5b3760fbc75e7504ecbad210b3fbcb72a0Just file renamingedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeIBL3eqmClosure_btest.cppdeletetest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBL_turbulentWakeibl3eqm_naca0004_ne64_p1_TestNew.txtaddtest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBL_turbulentWakeibl3eqm_naca0004_ne64_p1_Test.txtsrc/NonLinearSolver/LineUpdate/HalvingSearchLineUpdate_MatrixBlock_4x4_Instantiate.cppsrc/PanelMethod/ProjectionToQauxi_IBL.htest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test.txttest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppsrc/NonLinearSolver/NewtonSolver_MatrixBlock_4x4_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/Krylov/FGMRES_MatrixBlock_4x4_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_MatrixBlock_4x4_Instantiate.cppsrc/PanelMethod/AlgebraicEquationSet_ProjectToQauxi.hsrc/pde/IBL/BCIBLUniField.hsrc/pde/IBL/ElementProjectionIBLoutput_L2.hsrc/pde/IBL/PDEIBLUniField.hsrc/LinearAlgebra/SparseLinAlg/ScalarMatrix_CRS_int.cppsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Real_Instantiate.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeIBL3eqmClosure_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpp403cfcf6571713a6d0b6b798a1ca2f5ff25720951531248617000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduCoupled IBL UniField is working now. No transition yet. 2018-07-10 14:50:17 -0400403cfcf6571713a6d0b6b798a1ca2f5ff2572095Coupled IBL UniField is working now. No transition yet.editsrc/NonLinearSolver/NewtonSolver_MatrixBlock_4x4_Instantiate.cppeditsrc/pde/IBL/ElementProjectionIBLoutput_L2.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeIBL3eqmClosure_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cppeditsrc/pde/IBL/BCIBLUniField.heditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Real_Instantiate.cppeditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_MatrixBlock_4x4_Instantiate.cppaddtest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cppeditsrc/PanelMethod/AlgebraicEquationSet_ProjectToQauxi.heditsrc/PanelMethod/ProjectionToQauxi_IBL.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppeditsrc/LinearAlgebra/SparseLinAlg/ScalarMatrix_CRS_int.cppeditsrc/NonLinearSolver/LineUpdate/HalvingSearchLineUpdate_MatrixBlock_4x4_Instantiate.cppeditsrc/LinearAlgebra/SparseLinAlg/Krylov/FGMRES_MatrixBlock_4x4_Instantiate.cppeditsrc/pde/IBL/PDEIBLUniField.haddtest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test.txtedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppsrc/pde/IBL/BCIBL2D.cppsrc/pde/IBL/BCIBLUniField.cppsrc/pde/IBL/PDEIBLUniField.hfb93e566be75f4be3d2634387d885c472261692f1531248866000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed complier warnings and errors 2018-07-10 14:54:26 -0400fb93e566be75f4be3d2634387d885c472261692fFixed complier warnings and errorseditsrc/pde/IBL/BCIBLUniField.cppeditsrc/pde/IBL/BCIBL2D.cppeditsrc/pde/IBL/PDEIBLUniField.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpp7b41ebdd614d6f3711b6fc06cf47247f7cdb30241531271983000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded a forced transition case for three-field IBL 2018-07-10 21:19:43 -04007b41ebdd614d6f3711b6fc06cf47247f7cdb3024Added a forced transition case for three-field IBLaddtest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppsrc/PanelMethod/ProjectionToQauxi_IBL.hcb617255e0ee36ff067cdf6f9461ad30e0b670d71531274166000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed compiler error 2018-07-10 21:56:06 -0400cb617255e0ee36ff067cdf6f9461ad30e0b670d7Fixed compiler erroreditsrc/PanelMethod/ProjectionToQauxi_IBL.hsrc/Field/Element/GalerkinWeightedIntegral_New.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppc04ec6ae979a7502c0ddebb313df7aab2e5700831531420118000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactored GalerkinWeightedIntegral for cut-cell transion IBL. Started working on UniField implementation 2018-07-12 14:28:38 -0400c04ec6ae979a7502c0ddebb313df7aab2e570083Refactored GalerkinWeightedIntegral for cut-cell transion IBL. Started working on UniField implementationedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppeditsrc/Field/Element/GalerkinWeightedIntegral_New.hsrc/pde/NDConvert/PDENDConvertSpace2D.hsrc/Field/Element/GalerkinWeightedIntegral_New.hsrc/Discretization/Galerkin/IntegrandCell_Galerkin_CutCellTransitionIBLUniField.hsrc/pde/IBL/PDEIBLUniField.h2aeeb1cc5a9a19eee2ed0726d224d0760c2df39b1531428796000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded UniField IBL cut-cell integrand class 2018-07-12 16:53:16 -04002aeeb1cc5a9a19eee2ed0726d224d0760c2df39bAdded UniField IBL cut-cell integrand classeditsrc/pde/IBL/PDEIBLUniField.heditsrc/pde/NDConvert/PDENDConvertSpace2D.heditsrc/Field/Element/GalerkinWeightedIntegral_New.haddsrc/Discretization/Galerkin/IntegrandCell_Galerkin_CutCellTransitionIBLUniField.hsrc/Discretization/Galerkin/ResidualCell_Galerkin_CutCellTransitionIBL.hsrc/Discretization/DG/ResidualCell_DGBR2.h858edc9a830095aa0f6c51dad9f97c261dd21af61531504127000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduminor edit 2018-07-13 13:48:47 -0400858edc9a830095aa0f6c51dad9f97c261dd21af6minor editeditsrc/Discretization/DG/ResidualCell_DGBR2.heditsrc/Discretization/Galerkin/ResidualCell_Galerkin_CutCellTransitionIBL.hsrc/Field/Element/GalerkinWeightedIntegral_New.hsrc/Discretization/Galerkin/ResidualCell_Galerkin.hsrc/Discretization/Galerkin/JacobianCell_Galerkin_CutCellTransitionIBLUniField.hsrc/Discretization/Galerkin/ResidualCell_Galerkin_CutCellTransitionIBL.hsrc/pde/IBL/PDEIBLUniField.hsrc/Discretization/Galerkin/ResidualCell_Galerkin_CutCellTransitionIBLUniField.hsrc/pde/NDConvert/PDENDConvertSpace2D.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppsrc/Discretization/Galerkin/JacobianCell_Galerkin_Param_CutCellTransitionIBLUniField.hsrc/Discretization/Galerkin/IntegrandCell_Galerkin_CutCellTransitionIBLUniField.hsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective.h512764fa268d2d9628466ac2d4287f137eecd6941531744316000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduIntermediate commit: working on UniField IBL 2018-07-16 08:31:56 -0400512764fa268d2d9628466ac2d4287f137eecd694Intermediate commit: working on UniField IBLedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppaddsrc/Discretization/Galerkin/JacobianCell_Galerkin_CutCellTransitionIBLUniField.haddsrc/Discretization/Galerkin/ResidualCell_Galerkin_CutCellTransitionIBLUniField.heditsrc/Discretization/Galerkin/ResidualCell_Galerkin.heditsrc/Field/Element/GalerkinWeightedIntegral_New.haddsrc/Discretization/Galerkin/JacobianCell_Galerkin_Param_CutCellTransitionIBLUniField.heditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_CutCellTransitionIBLUniField.heditsrc/Discretization/Galerkin/ResidualCell_Galerkin_CutCellTransitionIBL.heditsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective.heditsrc/pde/NDConvert/PDENDConvertSpace2D.heditsrc/pde/IBL/PDEIBLUniField.htest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBL_Panel_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBL_Panel_btest.cppe70732815e23c1960ba70be8000e0d96f7391b341531748284000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduPruned some ping tests for speedup 2018-07-16 09:38:04 -0400e70732815e23c1960ba70be8000e0d96f7391b34Pruned some ping tests for speedupedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBL_Panel_btest.cppedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBL_Panel_btest.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cpp2aa05339e53d0e1e5b7176fae3f114860e88401d1531769086000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edupre merge 2018-07-16 15:24:46 -04002aa05339e53d0e1e5b7176fae3f114860e88401dpre mergeedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppsrc/Discretization/Galerkin/Stabilization_Galerkin.h747e239334b8195899036a7f40f6da8401c8206d1531772590000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumoving to dev 2018-07-16 16:23:10 -0400747e239334b8195899036a7f40f6da8401c8206dmoving to deveditsrc/Discretization/Galerkin/Stabilization_Galerkin.hedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cpp155e86430ec794ac435af3509e258044fec9582a1531772762000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edupre merge 2018-07-16 16:26:02 -0400155e86430ec794ac435af3509e258044fec9582apre mergeedittest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppsrc/Field/Element/GalerkinWeightedIntegral_New.hsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppsrc/Discretization/Galerkin/JacobianCell_Galerkin_CutCellTransitionIBLUniField.hsrc/Discretization/Galerkin/ResidualCell_Galerkin_CutCellTransitionIBLUniField.hsrc/Discretization/Galerkin/JacobianCell_Galerkin_Param_CutCellTransitionIBLUniField.hsrc/Discretization/Galerkin/JacobianCell_Galerkin_CutCellTransitionIBL.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppsrc/Discretization/Galerkin/IntegrandCell_Galerkin_CutCellTransitionIBLUniField.hsrc/Field/Element/ElementXFieldLine_Instantiate_2D.cppsrc/Discretization/Galerkin/JacobianCell_Galerkin_Param.h99ee2ca4d6f62de58a72ed40bac9cf79d9a2eb9e1531787905000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduUniField IBL now working with cut-cell forced transition 2018-07-16 20:38:25 -040099ee2ca4d6f62de58a72ed40bac9cf79d9a2eb9eUniField IBL now working with cut-cell forced transitioneditsrc/Field/Element/GalerkinWeightedIntegral_New.heditsrc/Discretization/Galerkin/JacobianCell_Galerkin_Param_CutCellTransitionIBLUniField.heditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_CutCellTransitionIBLUniField.heditsrc/Discretization/Galerkin/JacobianCell_Galerkin_CutCellTransitionIBLUniField.heditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppeditsrc/Discretization/Galerkin/ResidualCell_Galerkin_CutCellTransitionIBLUniField.heditsrc/Discretization/Galerkin/JacobianCell_Galerkin_Param.heditsrc/Discretization/Galerkin/JacobianCell_Galerkin_CutCellTransitionIBL.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppeditsrc/Field/Element/ElementXFieldLine_Instantiate_2D.cppsrc/Discretization/Galerkin/JacobianCell_Galerkin_Param.htest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBLUniField_Panel_btest.cpp82bb424ecb64d5a2cfc12a09dce2a7d178d6951b1531789625000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded a 4x4 system ping test for cut-cell UniField IBL forced transition 2018-07-16 21:07:05 -040082bb424ecb64d5a2cfc12a09dce2a7d178d6951bAdded a 4x4 system ping test for cut-cell UniField IBL forced transitioneditsrc/Discretization/Galerkin/JacobianCell_Galerkin_Param.haddtest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBLUniField_Panel_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBLUniField_Panel_btest.cpp8a00ce2e073374247a62bc26e8e95d8788e888bf1531794284000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded a 4x4 system ping test for cut-cell UniField IBL natural transition 2018-07-16 22:24:44 -04008a00ce2e073374247a62bc26e8e95d8788e888bfAdded a 4x4 system ping test for cut-cell UniField IBL natural transitionaddtest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBLUniField_Panel_btest.cppsrc/pde/IBL/PDEIBLUniField.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppdc5f2d425f215f03f8375f7ab1fbb01d5099a3421531794305000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduPlaying with natural transition cut-cell UniField IBL test case 2018-07-16 22:25:05 -0400dc5f2d425f215f03f8375f7ab1fbb01d5099a342Playing with natural transition cut-cell UniField IBL test caseeditsrc/pde/IBL/PDEIBLUniField.haddtest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppsrc/ErrorEstimate/Galerkin/ErrorEstimate_StrongForm_Galerkin.hsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.hsrc/Discretization/Galerkin/Stabilization_Galerkin.hsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Output_Stabilized.hsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized.hsrc/Discretization/Galerkin/SolutionData_Galerkin_Stabilized.h8e543c0adf8c4c35aa83f9e31f354a9c059997931531830322000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduadded an argument for fixing the order used in the calculation of tau. Thus the same tau is used in the primal and the adjoint calculation. 2018-07-17 08:25:22 -04008e543c0adf8c4c35aa83f9e31f354a9c05999793added an argument for fixing the order used in the calculation of tau. Thus the same tau is used in the primal and the adjoint calculation.editsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.heditsrc/Discretization/Galerkin/Stabilization_Galerkin.hedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppeditsrc/Discretization/Galerkin/SolutionData_Galerkin_Stabilized.heditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Output_Stabilized.heditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized.heditsrc/ErrorEstimate/Galerkin/ErrorEstimate_StrongForm_Galerkin.hsrc/pde/NS/SolutionFunction_Euler2D.htest/sandbox/Adapt2D_DGBR2_NavierStokes_NACADuct_toy.cppsrc/pde/NS/SolutionFunction_Euler2D.cppe0f1f586470544c5d604e71e49e45c745df78be41531845745000https://acdl.mit.edu/csi/user/arthuangarthuangarthuang@mit.edumod solution fcn 2018-07-17 12:42:25 -0400e0f1f586470544c5d604e71e49e45c745df78be4mod solution fcnedittest/sandbox/Adapt2D_DGBR2_NavierStokes_NACADuct_toy.cppeditsrc/pde/NS/SolutionFunction_Euler2D.heditsrc/pde/NS/SolutionFunction_Euler2D.cppsrc/Field/Element/GalerkinWeightedIntegral_New.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBLUniField_Panel_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpp34e21b7e85e1062d0411f6d92b7b50182b121eca1531851718000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduMinor cleanup before pushing to Jenkins 2018-07-17 14:21:58 -040034e21b7e85e1062d0411f6d92b7b50182b121ecaMinor cleanup before pushing to Jenkinsedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBLUniField_Panel_btest.cppeditsrc/Field/Element/GalerkinWeightedIntegral_New.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_IBL_Panel_btest.cppe4de30a085b20b76fc7b2a256c23b16b784238ea1531853530000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed compilation error 2018-07-17 14:52:10 -0400e4de30a085b20b76fc7b2a256c23b16b784238eaFixed compilation erroredittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_IBL_Panel_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppsrc/pde/IBL/PDEIBLUniField.ha8c8e1ad2f956f2e805ff6a65f42f6918ad8c5ab1531853881000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed point source term at transition (aka ctau fitting) 2018-07-17 14:58:01 -0400a8c8e1ad2f956f2e805ff6a65f42f6918ad8c5abFixed point source term at transition (aka ctau fitting)edittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppeditsrc/pde/IBL/PDEIBLUniField.htest/sandbox/Adapt1D_Galerkin_Stabilized_AD_BoundaryLayer_toy.cpp1396bba76bf908afc12c3162c766cb09485a99191531854731000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumoving to dev 2018-07-17 15:12:11 -04001396bba76bf908afc12c3162c766cb09485a9919moving to devedittest/sandbox/Adapt1D_Galerkin_Stabilized_AD_BoundaryLayer_toy.cpptest/sandbox/Adapt1D_Galerkin_Stabilized_AD_BoundaryLayer_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppf945d9d8ac8a5e1c5e4a91c1363a097adea979d21531854876000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumoving to dev 2018-07-17 15:14:36 -0400f945d9d8ac8a5e1c5e4a91c1363a097adea979d2moving to devedittest/sandbox/Adapt1D_Galerkin_Stabilized_AD_BoundaryLayer_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppsrc/PanelMethod/ProjectionToQauxi_IBL.hsrc/pde/IBL/BCIBLUniField.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne64_a0_unifield_test.txttest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_laminarBLforcedTransition0p8244925_turbulentWakexfoillag_naca0004_ne64_p1_Test_ExplicitMassCons.txtsrc/pde/IBL/PDEIBLUniField.hsrc/pde/IBL/ElementProjectionIBLoutput_L2.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpp8f9c87b4baacba1f565400815efac1fde9b66af01531878150000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFirst converged case with cut-cell UniField IBL forced transition 2018-07-17 21:42:30 -04008f9c87b4baacba1f565400815efac1fde9b66af0First converged case with cut-cell UniField IBL forced transitionedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppeditsrc/PanelMethod/ProjectionToQauxi_IBL.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppeditsrc/pde/IBL/PDEIBLUniField.haddtest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_laminarBLforcedTransition0p8244925_turbulentWakexfoillag_naca0004_ne64_p1_Test_ExplicitMassCons.txteditsrc/pde/IBL/ElementProjectionIBLoutput_L2.heditsrc/pde/IBL/BCIBLUniField.haddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne64_a0_unifield_test.txtsrc/Meshing/refine/MesherInterface_refine_2D.cppsrc/Adaptation/MeshAdapter.cppsrc/Meshing/refine/CMakeLists.txt811f08f9c0e21cbfff0c5b58f0b3ad0de8d923a81531917471000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edu2D refine interface, it doesn't work yet 2018-07-18 08:37:51 -0400811f08f9c0e21cbfff0c5b58f0b3ad0de8d923a82D refine interface, it doesn't work yeteditsrc/Adaptation/MeshAdapter.cppaddsrc/Meshing/refine/MesherInterface_refine_2D.cppeditsrc/Meshing/refine/CMakeLists.txttest/sandbox/Adapt2D_DGBR2_NavierStokes_BackwardsStep_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AR_toy.cppsrc/Discretization/Galerkin/Stabilization_Galerkin.htest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_BackwardsStep_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cpptest/sandbox/Adapt2D_DGBR2_AR_toy.cpp4f8a53bff27bf316ee18008b8568bf5fb454c8821531917534000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduhacks to move to NASA box 2018-07-18 08:38:54 -04004f8a53bff27bf316ee18008b8568bf5fb454c882hacks to move to NASA boxedittest/sandbox/Adapt2D_Galerkin_Stabilized_AR_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_BackwardsStep_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cppedittest/sandbox/Adapt2D_DGBR2_AR_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppeditsrc/Discretization/Galerkin/Stabilization_Galerkin.hedittest/sandbox/Adapt2D_DGBR2_NavierStokes_BackwardsStep_toy.cppsrc/pde/IBL/ElementProjectionIBLoutput_L2.h13bce2c6ec5fe2f08a7db508cd94071fb852a4531531932868000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduOutput primary unknowns (delta, A) before scaling 2018-07-18 12:54:28 -040013bce2c6ec5fe2f08a7db508cd94071fb852a453Output primary unknowns (delta, A) before scalingeditsrc/pde/IBL/ElementProjectionIBLoutput_L2.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppb05a01dbd0f1b121662ca60f608b848c112ac40f1531938520000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed typo 2018-07-18 14:28:40 -0400b05a01dbd0f1b121662ca60f608b848c112ac40fFixed typoedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/sandbox/Solve2D_Uncoupled_DGAdvective_IBL_toy.cpptest/sandbox/Solve2D_Uncoupled_DGAdvective_IBL_p0_toy.cpp36fcde1030102cf6084b1797691e188b5bd5cce81532025311000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduExamined DG residual smoothness on p0 and p1 2018-07-19 14:35:11 -040036fcde1030102cf6084b1797691e188b5bd5cce8Examined DG residual smoothness on p0 and p1edittest/sandbox/Solve2D_Uncoupled_DGAdvective_IBL_toy.cppaddtest/sandbox/Solve2D_Uncoupled_DGAdvective_IBL_p0_toy.cppsrc/pde/IBL/PDEIBL2D.h61a1f78931b7c10591435c9b510f71baec632e941532028830000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded a new transition front flux formulation that is consistent with DG full-upwind interface flux scheme 2018-07-19 15:33:50 -040061a1f78931b7c10591435c9b510f71baec632e94Added a new transition front flux formulation that is consistent with DG full-upwind interface flux schemeeditsrc/pde/IBL/PDEIBL2D.hsrc/Discretization/Galerkin/IntegrandCell_Galerkin_CutCellTransitionIBL.h4bbe4bdd38ac3c337b6a45ddb5ebd206491b9d321532034217000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded remarks 2018-07-19 17:03:37 -04004bbe4bdd38ac3c337b6a45ddb5ebd206491b9d32Added remarkseditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_CutCellTransitionIBL.hsrc/pde/IBL/PDEIBLUniField.h99fb99431cb30780d09773a3ddaf8397bbb651db1532094021000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRenamed macro 2018-07-20 09:40:21 -040099fb99431cb30780d09773a3ddaf8397bbb651dbRenamed macroeditsrc/pde/IBL/PDEIBLUniField.hsrc/pde/NDConvert/PDENDConvertSpace2D.hsrc/Discretization/Galerkin/IntegrandInteriorTrace_Galerkin_manifold.hsrc/Field/Element/TraceUnitNormal.hsrc/Discretization/Galerkin/Integrand_Galerkin_fwd.ha052e2b8300b244ff734e047ccf8da0202e802b41532101733000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded a separate trace unit normal formulation for manifold interior trace integrand 2018-07-20 11:48:53 -0400a052e2b8300b244ff734e047ccf8da0202e802b4Added a separate trace unit normal formulation for manifold interior trace integrandeditsrc/Discretization/Galerkin/IntegrandInteriorTrace_Galerkin_manifold.heditsrc/pde/NDConvert/PDENDConvertSpace2D.heditsrc/Discretization/Galerkin/Integrand_Galerkin_fwd.heditsrc/Field/Element/TraceUnitNormal.hsrc/PanelMethod/ProjectionToQauxi_IBL.hsrc/pde/IBL/PDEIBL2D.htest/sandbox/Solve2D_Uncoupled_DGAdvective_IBL_toy.cppsrc/Discretization/Galerkin/Integrand_Galerkin_fwd.htest/sandbox/Solve2D_Uncoupled_DGAdvective_IBL_p0_toy.cppf6c16fa97d4955a916f24ebdca778b3c5396ac731532110774000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactored duplicate-field cut-cell IBL numerical flux at element interface and transition front to make them consistent. Many pyrite files are no longer valid (to be fixed later) 2018-07-20 14:19:34 -0400f6c16fa97d4955a916f24ebdca778b3c5396ac73Refactored duplicate-field cut-cell IBL numerical flux at element interface and transition front to make them consistent. Many pyrite files are no longer valid (to be fixed later)editsrc/PanelMethod/ProjectionToQauxi_IBL.heditsrc/Discretization/Galerkin/Integrand_Galerkin_fwd.heditsrc/pde/IBL/PDEIBL2D.hedittest/sandbox/Solve2D_Uncoupled_DGAdvective_IBL_p0_toy.cppedittest/sandbox/Solve2D_Uncoupled_DGAdvective_IBL_toy.cppsrc/pde/NDConvert/PDENDConvertSpace2D.hsrc/Field/Element/GalerkinWeightedIntegral_New.hsrc/Discretization/Galerkin/IntegrandCell_Galerkin_CutCellTransitionIBL.hsrc/pde/IBL/PDEIBL2D.htest/unit/pde/IBL/PDEIBL2D_btest.cpp075d75f3bcde97f8dedb59347fe7ca04bd57d3471532350304000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduReplaced amplification factor growth rate term in turbulent BL regions 2018-07-23 08:51:44 -0400075d75f3bcde97f8dedb59347fe7ca04bd57d347Replaced amplification factor growth rate term in turbulent BL regionsedittest/unit/pde/IBL/PDEIBL2D_btest.cppeditsrc/pde/NDConvert/PDENDConvertSpace2D.heditsrc/Field/Element/GalerkinWeightedIntegral_New.heditsrc/pde/IBL/PDEIBL2D.heditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_CutCellTransitionIBL.hsrc/pde/IBL/IBLMiscClosures.hsrc/PanelMethod/ProjectionToQauxi_IBL.h9db7ba204a0c5a84ab45dc418a8be0b6f2f918a41532355725000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduMinor edits 2018-07-23 10:22:05 -04009db7ba204a0c5a84ab45dc418a8be0b6f2f918a4Minor editseditsrc/pde/IBL/IBLMiscClosures.heditsrc/PanelMethod/ProjectionToQauxi_IBL.hsrc/pde/NS/OutputEuler2D.hsrc/pde/NS/BCEuler2D_mitState.htest/sandbox/Adapt2D_DGBR2_NavierStokes_NACADuct_toy.cppsrc/pde/AnalyticFunction/ScalarFunction1D.htest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_OjedaMMS_toy.cppsrc/pde/NS/BCEuler2D_BN.htest/sandbox/ErrorOrder_1D_CGStab_AD_toy.cppsrc/Discretization/Galerkin/Stabilization_Galerkin.hsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Output_Stabilized.hsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized.hsrc/Discretization/Galerkin/IntegrandBoundaryTrace_Flux_mitState_Nitsche.h5be81b31dd042ca0e06102751543d882a56769071532367977000https://acdl.mit.edu/csi/user/arthuangarthuangarthuang@mit.eduwent back to nNodes for advective stabilization 2018-07-23 13:46:17 -04005be81b31dd042ca0e06102751543d882a5676907went back to nNodes for advective stabilizationeditsrc/pde/NS/OutputEuler2D.hedittest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_OjedaMMS_toy.cppeditsrc/Discretization/Galerkin/Stabilization_Galerkin.heditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized.hedittest/sandbox/ErrorOrder_1D_CGStab_AD_toy.cppeditsrc/Discretization/Galerkin/IntegrandBoundaryTrace_Flux_mitState_Nitsche.hedittest/sandbox/Adapt2D_DGBR2_NavierStokes_NACADuct_toy.cppeditsrc/pde/NS/BCEuler2D_mitState.heditsrc/pde/AnalyticFunction/ScalarFunction1D.heditsrc/pde/NS/BCEuler2D_BN.heditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Output_Stabilized.htest/sandbox/IO/naca0004_qinit_ne64_a0_laminar_xfoil.txttest/sandbox/IO/naca0004_vel_ne63_a0_laminar.txttest/sandbox/IO/naca0004_ne63.txttest/sandbox/IO/naca0004_qinit_ne63_a0_laminar_xfoil.txttest/sandbox/IO/naca0004_vel_ne64_a0_laminar.txttest/sandbox/IO/naca0004_ne64.txtfce97050de5688364dbc9cbc7c9568f9c429a5b51532377048000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRemoved IO files 2018-07-23 16:17:28 -0400fce97050de5688364dbc9cbc7c9568f9c429a5b5Removed IO filesdeletetest/sandbox/IO/naca0004_vel_ne63_a0_laminar.txtdeletetest/sandbox/IO/naca0004_vel_ne64_a0_laminar.txtdeletetest/sandbox/IO/naca0004_ne63.txtdeletetest/sandbox/IO/naca0004_ne64.txtdeletetest/sandbox/IO/naca0004_qinit_ne63_a0_laminar_xfoil.txtdeletetest/sandbox/IO/naca0004_qinit_ne64_a0_laminar_xfoil.txtsrc/Field/Element/GalerkinWeightedIntegral_New.hsrc/Discretization/DG/AlgebraicEquationSet_TransitionIBL.hb3f2da0e4684a24909e767dd0ffd7356e8ae123c1532439728000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduminor edits 2018-07-24 09:42:08 -0400b3f2da0e4684a24909e767dd0ffd7356e8ae123cminor editseditsrc/Field/Element/GalerkinWeightedIntegral_New.heditsrc/Discretization/DG/AlgebraicEquationSet_TransitionIBL.hsrc/Discretization/DG/AlgebraicEquationSet_TransitionIBL.hsrc/Discretization/UpdateFraction/UpdateFractionCell.hc708c5d2b176b47a67ad70f080594fad6905c2b11532440291000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadded comments 2018-07-24 09:51:31 -0400c708c5d2b176b47a67ad70f080594fad6905c2b1added commentseditsrc/Discretization/UpdateFraction/UpdateFractionCell.heditsrc/Discretization/DG/AlgebraicEquationSet_TransitionIBL.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppeddc6e12283d537e2a71083251fcff0d0008b0441532442032000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduUpdated printout 2018-07-24 10:20:32 -0400eddc6e12283d537e2a71083251fcff0d0008b044Updated printoutedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/sandbox/Solve3D_CGStabilized_RANSSA_HemisphereCylinder_toy.cpptest/sandbox/Adapt2D_DGBR2_NavierStokes_FlatPlate_toy.cpptest/sandbox/Solve2D_CGStabilized_Triangle_RANSSA_Joukowski_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_Euler_CubicSource_toy.cpptest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_OjedaMMS_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_L2_CornerSingularity_toy.cpptest/unit/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_Triangle_Euler_btest.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cpptest/sandbox/ErrorOrder_1D_CGStab_AD_toy.cpptest/system/Adaptation/SolverInterface_Galerkin_Stabilized_btest.cpptest/unit/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized_Triangle_AD_btest.cpptest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_Joukowski_toy.cpptest/system/Asymptotic/ErrorEstimateOrder_2D_CG_Triangle_AD_btest.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_Helmholtz_toy.cpptest/sandbox/ErrorOrder_2D_CGStabilizedLifted_Triangle_AD_toy.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AR_btest.cpptest/sandbox/ErrorOrder_2D_CGStabilized_Triangle_AD_toy.cpptest/sandbox/Solve2D_CGStabilized_Triangle_Euler_GaussianBump_toy.cpptest/unit/Discretization/Galerkin/IntegrandCell_Galerkin_StrongForm_AD_btest.cpptest/unit/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized_AD_btest.cpptest/system/LocalSolve/EdgeLocalSolve2D_Primal_Galerkin_Stabilized_Triangle_AD_btest.cpptest/system/LocalSolve/EdgeLocalSolve1D_Dual_Galerkin_Stabilized_Line_AD_btest.cpptest/unit/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized_NS_btest.cpptest/unit/ErrorEstimate/ErrorEstimateCell_Galerkin_AD_btest.cpptest/unit/Discretization/Galerkin/StabilizationMatrix_NS_btest.cpptest/unit/Discretization/Galerkin/JacobianCell_Galerkin_Stabilized_NS_btest.cpptest/sandbox/Solve3D_CGStabilized_RANSSA_CRM_Sub_toy.cpptest/system/Asymptotic/ErrorEstimateOrder_1D_CG_Line_AD_btest.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_Poisson_toy.cpptest/unit/ErrorEstimate/ErrorEstimate_Galerkin_AD_btest.cpptest/unit/ErrorEstimate/ErrorEstimateNodal_Galerkin_AD_btest.cpptest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_FlatPlate_toy.cpptest/unit/Discretization/Galerkin/IntegrandCell_Galerkin_Output_Stabilized_AD_btest.cpptest/system/Asymptotic/ErrorEstimateOrder_2D_CG_Triangle_RD_btest.cpptest/unit/Discretization/Galerkin/JacobianCell_Galerkin_Stabilized_AD_btest.cpptest/system/Asymptotic/ErrorOrder_2D_CGStabilized_RANS_MMS_btest.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/unit/Discretization/Galerkin/SolutionData_Galerkin_Stabilized_btest.cpptest/unit/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_Triangle_AD_btest.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_Euler_btest.cppsrc/Discretization/Galerkin/Stabilization_Galerkin.htest/unit/ErrorEstimate/ErrorEstimateCell_PrimalStrongForm_Galerkin_AD_btest.cpptest/sandbox/Adapt1D_Galerkin_Stabilized_AR_toy.cpp109b3ca73265bbe84f4addbc51a5490ff992977f1532523227000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educhanged to all take order of stabilization as argument to stab 2018-07-25 08:53:47 -0400109b3ca73265bbe84f4addbc51a5490ff992977fchanged to all take order of stabilization as argument to stabedittest/sandbox/Solve2D_CGStabilized_Triangle_Euler_GaussianBump_toy.cppedittest/unit/Discretization/Galerkin/IntegrandCell_Galerkin_Output_Stabilized_AD_btest.cppedittest/unit/ErrorEstimate/ErrorEstimateCell_PrimalStrongForm_Galerkin_AD_btest.cppedittest/system/LocalSolve/EdgeLocalSolve2D_Primal_Galerkin_Stabilized_Triangle_AD_btest.cppedittest/system/Asymptotic/ErrorEstimateOrder_2D_CG_Triangle_AD_btest.cppedittest/unit/Discretization/Galerkin/JacobianCell_Galerkin_Stabilized_AD_btest.cppedittest/sandbox/ErrorOrder_2D_CGStabilizedLifted_Triangle_AD_toy.cppedittest/system/Adaptation/SolverInterface_Galerkin_Stabilized_btest.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_Euler_CubicSource_toy.cppedittest/sandbox/Solve3D_CGStabilized_RANSSA_CRM_Sub_toy.cppedittest/unit/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_Triangle_AD_btest.cppedittest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_FlatPlate_toy.cppedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_Euler_btest.cppedittest/sandbox/Solve3D_CGStabilized_RANSSA_HemisphereCylinder_toy.cppedittest/system/Asymptotic/ErrorEstimateOrder_2D_CG_Triangle_RD_btest.cppedittest/unit/ErrorEstimate/ErrorEstimateNodal_Galerkin_AD_btest.cppedittest/system/Asymptotic/ErrorOrder_2D_CGStabilized_RANS_MMS_btest.cppedittest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_OjedaMMS_toy.cppedittest/unit/Discretization/Galerkin/JacobianCell_Galerkin_Stabilized_NS_btest.cppedittest/sandbox/Adapt2D_DGBR2_NavierStokes_FlatPlate_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_L2_CornerSingularity_toy.cppedittest/unit/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_Triangle_Euler_btest.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppedittest/system/Asymptotic/ErrorEstimateOrder_1D_CG_Line_AD_btest.cppedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cppedittest/unit/Discretization/Galerkin/IntegrandCell_Galerkin_StrongForm_AD_btest.cppeditsrc/Discretization/Galerkin/Stabilization_Galerkin.hedittest/unit/ErrorEstimate/ErrorEstimateCell_Galerkin_AD_btest.cppedittest/sandbox/Adapt1D_Galerkin_Stabilized_AR_toy.cppedittest/sandbox/Solve2D_CGStabilized_Triangle_RANSSA_Joukowski_toy.cppedittest/unit/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized_AD_btest.cppedittest/unit/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized_Triangle_AD_btest.cppedittest/sandbox/ErrorOrder_1D_CGStab_AD_toy.cppedittest/system/LocalSolve/EdgeLocalSolve1D_Dual_Galerkin_Stabilized_Line_AD_btest.cppedittest/unit/Discretization/Galerkin/StabilizationMatrix_NS_btest.cppedittest/unit/Discretization/Galerkin/SolutionData_Galerkin_Stabilized_btest.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_Helmholtz_toy.cppedittest/unit/ErrorEstimate/ErrorEstimate_Galerkin_AD_btest.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_Poisson_toy.cppedittest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_Joukowski_toy.cppedittest/sandbox/ErrorOrder_2D_CGStabilized_Triangle_AD_toy.cppedittest/unit/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized_NS_btest.cppedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AR_btest.cppsrc/PanelMethod/ProjectionToQauxi_IBL.h59d8e9cc7625ae12f3e6b2bf625a0d2ad5c8e3fe1532523642000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduTurned off one upwind flux advective method in Projection to Qauxi. Switched from full upwinding to LF flux 2018-07-25 09:00:42 -040059d8e9cc7625ae12f3e6b2bf625a0d2ad5c8e3feTurned off one upwind flux advective method in Projection to Qauxi. Switched from full upwinding to LF fluxeditsrc/PanelMethod/ProjectionToQauxi_IBL.hsrc/Discretization/Galerkin/Stabilization_Galerkin.hsrc/Adaptation/MOESS/SolverInterface.h580bc55cea371173724948a9718644b6f61eb60d1532523873000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edudiff got lost in the merge, and a line too long 2018-07-25 09:04:33 -0400580bc55cea371173724948a9718644b6f61eb60ddiff got lost in the merge, and a line too longeditsrc/Discretization/Galerkin/Stabilization_Galerkin.heditsrc/Adaptation/MOESS/SolverInterface.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.hsrc/Adaptation/MeshAdapter.cppc661db32b446df7f31693bb02dae2af9cd9d61191532524412000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduforgot the refine preprocessor bits, and a curly brace was one space away from where it should be 2018-07-25 09:13:32 -0400c661db32b446df7f31693bb02dae2af9cd9d6119forgot the refine preprocessor bits, and a curly brace was one space away from where it should beeditsrc/Adaptation/MeshAdapter.cppeditsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.htest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cpptest/unit/UnitGrids/XField2D_BackwardsStep_X1.cpptest/system/Asymptotic/ErrorEstimateOrder_2D_CG_Triangle_AD_btest.cppb9492c2695319fcd99ff5cf3c35b9ae6a8220bf81532525608000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduvera fixes 2018-07-25 09:33:28 -0400b9492c2695319fcd99ff5cf3c35b9ae6a8220bf8vera fixesedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppedittest/system/Asymptotic/ErrorEstimateOrder_2D_CG_Triangle_AD_btest.cppedittest/unit/UnitGrids/XField2D_BackwardsStep_X1.cpptest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_OjedaMMS_toy.cpp4e6dce396960f01c6002616fdd0349a332df92471532528772000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduforgot another one 2018-07-25 10:26:12 -04004e6dce396960f01c6002616fdd0349a332df9247forgot another oneedittest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_OjedaMMS_toy.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cpptest/sandbox/Adapt2D_DGBR2_NavierStokes_FlatPlate_toy.cpptest/sandbox/Adapt2D_DGBR2_AR_toy.cpp19cf6f52d3c43b18b72b1cbcf2e98cdb737882141532538059000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edutweaks for jenkins 2018-07-25 13:00:59 -040019cf6f52d3c43b18b72b1cbcf2e98cdb73788214tweaks for jenkinsedittest/sandbox/Adapt2D_DGBR2_NavierStokes_FlatPlate_toy.cppedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppedittest/sandbox/Adapt2D_DGBR2_AR_toy.cpptest/sandbox/Adapt2D_DGBR2_NavierStokes_FlatPlate_toy.cpp2b39858f2ec2f491580c5b3d5b19903686daffd61532539020000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educurly braces again 2018-07-25 13:17:00 -04002b39858f2ec2f491580c5b3d5b19903686daffd6curly braces againedittest/sandbox/Adapt2D_DGBR2_NavierStokes_FlatPlate_toy.cppsrc/Meshing/refine/XField3D_refine.cpptest/unit/Meshing/refine/refine3D_btest.cpp62da1362eac1292c96e8c0229f97c0da158b5f5a1532543174000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edufixed coarsening node numbering bug, added a unit test to guard it 2018-07-25 14:26:14 -040062da1362eac1292c96e8c0229f97c0da158b5f5afixed coarsening node numbering bug, added a unit test to guard iteditsrc/Meshing/refine/XField3D_refine.cppedittest/unit/Meshing/refine/refine3D_btest.cppsrc/Meshing/refine/MesherInterface_refine.cppsrc/Meshing/refine/XField3D_refine.cpptest/unit/Meshing/refine/refine3D_btest.cppa55bd6a779f0c45f717a52ccadea63cfb396cc261532543563000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduforgot some things 2018-07-25 14:32:43 -0400a55bd6a779f0c45f717a52ccadea63cfb396cc26forgot some thingsedittest/unit/Meshing/refine/refine3D_btest.cppeditsrc/Meshing/refine/XField3D_refine.cppeditsrc/Meshing/refine/MesherInterface_refine.cpptest/unit/UnitGrids/XField2D_BackwardsStep_X1.cpp4e62a964434c8b0b0c6825aeed61907a6054a30d1532616310000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edufixed warning about unread data 2018-07-26 10:45:10 -04004e62a964434c8b0b0c6825aeed61907a6054a30dfixed warning about unread dataedittest/unit/UnitGrids/XField2D_BackwardsStep_X1.cppsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion3D.hsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion2D.hsrc/BasisFunction/Quadrature_Cache.htest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_OjedaMMS_toy.cpptest/sandbox/ErrorOrder_1D_CGStab_AD_toy.cppsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion1D.htest/sandbox/Solve2D_DGBR2_Triangle_NavierStokes_OjedaMMS_toy.cppsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized.hsrc/Discretization/Galerkin/IntegrandCell_Galerkin_StrongForm.htest/sandbox/Solve2D_HDG_Triangle_NavierStokes_OjedaMMS_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppsrc/pde/NS/SolutionFunction_NavierStokes2D.hsrc/pde/NDConvert/PDENDConvertSpace2D.hsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Output_Stabilized.hsrc/Discretization/Galerkin/Stabilization_Galerkin.hsrc/pde/NS/PDEEuler2D.hsrc/pde/NDConvert/PDENDConvertSpace1D.h84032170e940ec49fba808d61af56893b0a277b81532630974000https://acdl.mit.edu/csi/user/arthuangarthuangarthuang@mit.edumodified stabilized output, reverted to node based advection stabilization 2018-07-26 14:49:34 -040084032170e940ec49fba808d61af56893b0a277b8modified stabilized output, reverted to node based advection stabilizationeditsrc/pde/NS/PDEEuler2D.heditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_StrongForm.heditsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion1D.heditsrc/pde/NS/SolutionFunction_NavierStokes2D.hedittest/sandbox/Solve2D_HDG_Triangle_NavierStokes_OjedaMMS_toy.cppeditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Output_Stabilized.heditsrc/Discretization/Galerkin/Stabilization_Galerkin.hedittest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_OjedaMMS_toy.cppeditsrc/BasisFunction/Quadrature_Cache.hedittest/sandbox/ErrorOrder_1D_CGStab_AD_toy.cppeditsrc/pde/NDConvert/PDENDConvertSpace1D.hedittest/sandbox/Solve2D_DGBR2_Triangle_NavierStokes_OjedaMMS_toy.cppeditsrc/pde/NDConvert/PDENDConvertSpace2D.hedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppeditsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion2D.heditsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion3D.heditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized.htest/sandbox/Solve2D_DGBR2_Triangle_RANSSA_Joukowski_UROP_toy.cpptest/sandbox/Adapt2D_DGBR2_RANSSA_Joukowski_UROP_toy.cppsrc/Discretization/DG/AlgebraicEquationSet_DGBR2_impl.htest/sandbox/Solve2D_DGBR2_Quadrilateral_RANSSA_Joukowski_UROP_toy.cppsrc/Meshing/EPIC/XField_PX.cpp51c27de4ad23207ea79f3fb505d8636cb4dcfedb1532705114000https://acdl.mit.edu/csi/user/jzavalajzavalajzavala@mit.edusandbox, added high order quads to PX mesh reader, fixed periodic bug in DG 2018-07-27 11:25:14 -040051c27de4ad23207ea79f3fb505d8636cb4dcfedbsandbox, added high order quads to PX mesh reader, fixed periodic bug in DGaddtest/sandbox/Adapt2D_DGBR2_RANSSA_Joukowski_UROP_toy.cppaddtest/sandbox/Solve2D_DGBR2_Quadrilateral_RANSSA_Joukowski_UROP_toy.cppeditsrc/Meshing/EPIC/XField_PX.cppeditsrc/Discretization/DG/AlgebraicEquationSet_DGBR2_impl.haddtest/sandbox/Solve2D_DGBR2_Triangle_RANSSA_Joukowski_UROP_toy.cpptest/sandbox/Solve2D_DGBR2_Triangle_RANSSA_Joukowski_UROP_toy.cpptest/sandbox/Adapt2D_DGBR2_RANSSA_Joukowski_UROP_toy.cpptest/sandbox/Solve2D_DGBR2_Quadrilateral_RANSSA_Joukowski_UROP_toy.cppsrc/Meshing/EPIC/XField_PX.cpp3e6d68f95d20b4037fc6cbe56e88955097287f211532717714000https://acdl.mit.edu/csi/user/jzavalajzavalajzavala@mit.eduRemoved tabs from files in previous commit. 2018-07-27 14:55:14 -04003e6d68f95d20b4037fc6cbe56e88955097287f21Removed tabs from files in previous commit.edittest/sandbox/Solve2D_DGBR2_Quadrilateral_RANSSA_Joukowski_UROP_toy.cppeditsrc/Meshing/EPIC/XField_PX.cppedittest/sandbox/Solve2D_DGBR2_Triangle_RANSSA_Joukowski_UROP_toy.cppedittest/sandbox/Adapt2D_DGBR2_RANSSA_Joukowski_UROP_toy.cpptest/unit/Discretization/Galerkin/FunctionalBoundaryTrace_Dispatch_Galerkin_AD_btest.cpptest/sandbox/Solve2D_DGBR2_Triangle_NavierStokes_NACADuct_toy.cpptest/unit/Discretization/Galerkin/StabilizationMatrix_NS_btest.cpptest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_OjedaMMS_toy.cpptest/sandbox/Solve2D_DGBR2_Triangle_NavierStokes_OjedaMMS_toy.cppsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized.htest/unit/pde/NS/EulerSolutionFunction2D_btest.cpptest/unit/pde/NS/BCEuler2D_btest.cpptest/unit/pde/NS/NavierStokesSolutionFunction2D_btest.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cpptest/sandbox/Solve2D_DGAdvective_Triangle_Euler_Wake_toy.cpptest/unit/Discretization/Galerkin/IntegrandCell_Galerkin_Output_Stabilized_AD_btest.cppsrc/pde/NS/SolutionFunction_NavierStokes2D.htest/unit/Discretization/Galerkin/Galerkin_AlgEqSet_OutputFunctional.nbsrc/pde/NDConvert/PDENDConvertSpace2D.hsrc/pde/NS/BCEuler2D_BN.hsrc/Discretization/Galerkin/Stabilization_Galerkin.hsrc/pde/NS/SolutionFunction_Euler2D.hsrc/Discretization/Galerkin/IntegrandBoundaryTrace_Flux_mitState_Nitsche.htest/unit/Discretization/Galerkin/IntegrandBoundaryTrace_Flux_mitState_Nitsche_AD_btest.cpptest/unit/Discretization/Galerkin/Galerkin_Stabilized_AD.nbb1f9bce218eb01c5ca7e2bf4f60e598613bf79381532721893000https://acdl.mit.edu/csi/user/arthuangarthuangarthuang@mit.edustabilization consistent and passing unit tests. updated nitsche parameters 2018-07-27 16:04:53 -0400b1f9bce218eb01c5ca7e2bf4f60e598613bf7938stabilization consistent and passing unit tests. updated nitsche parameterseditsrc/pde/NDConvert/PDENDConvertSpace2D.hedittest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_OjedaMMS_toy.cppeditsrc/pde/NS/SolutionFunction_Euler2D.hedittest/unit/pde/NS/EulerSolutionFunction2D_btest.cppedittest/unit/pde/NS/NavierStokesSolutionFunction2D_btest.cppeditsrc/pde/NS/BCEuler2D_BN.hedittest/unit/Discretization/Galerkin/FunctionalBoundaryTrace_Dispatch_Galerkin_AD_btest.cppeditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized.hedittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cppedittest/sandbox/Solve2D_DGAdvective_Triangle_Euler_Wake_toy.cppedittest/sandbox/Solve2D_DGBR2_Triangle_NavierStokes_OjedaMMS_toy.cppedittest/unit/Discretization/Galerkin/Galerkin_Stabilized_AD.nbedittest/unit/Discretization/Galerkin/IntegrandCell_Galerkin_Output_Stabilized_AD_btest.cppeditsrc/pde/NS/SolutionFunction_NavierStokes2D.heditsrc/Discretization/Galerkin/Stabilization_Galerkin.hedittest/unit/Discretization/Galerkin/StabilizationMatrix_NS_btest.cppedittest/unit/Discretization/Galerkin/Galerkin_AlgEqSet_OutputFunctional.nbeditsrc/Discretization/Galerkin/IntegrandBoundaryTrace_Flux_mitState_Nitsche.hedittest/unit/pde/NS/BCEuler2D_btest.cppedittest/sandbox/Solve2D_DGBR2_Triangle_NavierStokes_NACADuct_toy.cppedittest/unit/Discretization/Galerkin/IntegrandBoundaryTrace_Flux_mitState_Nitsche_AD_btest.cpptest/sandbox/Solve2D_DGBR2_Triangle_RANSSA_Joukowski_UROP_toy.cpptest/sandbox/Solve2D_DGBR2_Quadrilateral_RANSSA_Joukowski_UROP_toy.cpptest/sandbox/Adapt2D_DGBR2_RANSSA_Joukowski_UROP_toy.cppcd515601439e86886858553af306d8282f66c04f1532725753000https://acdl.mit.edu/csi/user/jzavalajzavalajzavala@mit.eduFixed curly brackets formatting in previous commit's files. 2018-07-27 17:09:13 -0400cd515601439e86886858553af306d8282f66c04fFixed curly brackets formatting in previous commit's files.edittest/sandbox/Solve2D_DGBR2_Triangle_RANSSA_Joukowski_UROP_toy.cppedittest/sandbox/Solve2D_DGBR2_Quadrilateral_RANSSA_Joukowski_UROP_toy.cppedittest/sandbox/Adapt2D_DGBR2_RANSSA_Joukowski_UROP_toy.cppCMakeInclude/Finds/FindCAPS.cmakesrc/Meshing/EGTess/EGTessModel.cppCMakeInclude/Builds/BuildTETGEN.cmakesrc/UserInterfaces/LIPSolver.cppdc3458c5dc3ff3db19c3d2456aca48408b52a65c1532732604000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMinor cleanup 2018-07-27 19:03:24 -0400dc3458c5dc3ff3db19c3d2456aca48408b52a65cMinor cleanupeditCMakeInclude/Builds/BuildTETGEN.cmakeeditsrc/Meshing/EGTess/EGTessModel.cppeditsrc/UserInterfaces/LIPSolver.cppeditCMakeInclude/Finds/FindCAPS.cmakesrc/pde/NDConvert/PDENDConvertSpaceTime3D.hsrc/pde/NS/PDERANSSA2D.hsrc/pde/NDConvert/PDENDConvertSpaceTime1D.hsrc/pde/ArtificialViscosity/PDEmitAVSensor3D.hsrc/pde/PorousMedia/PDEBuckleyLeverett_ArtificialViscosity1D.hsrc/pde/Sensor/PDESensorParameter1D.hsrc/pde/NS/PDEEulermitAVDiffusion3D.hsrc/pde/ArtificialViscosity/PDEmitAVSensor1D.hsrc/pde/NS/PDEEulermitAVDiffusion1D.hsrc/pde/Burgers/PDEBurgers_ArtificialViscosity1D.hsrc/pde/ArtificialViscosity/AVSensor_ViscousFlux2D.hsrc/pde/PorousMedia/PDETwoPhase_ArtificialViscosity2D.hsrc/pde/NS/BCEulerArtificialViscosity3D.hsrc/pde/NDConvert/PDENDConvertSpace2D.hsrc/Discretization/DG/IntegrandInteriorTrace_DGBR2.hsrc/pde/NS/PDERANSSA3D.hsrc/pde/NDConvert/PDENDConvertSpaceTime2D.hsrc/pde/Sensor/PDESensorParameter2D.hsrc/pde/NS/PDEEulermitAVDiffusion2D.hsrc/pde/ArtificialViscosity/PDEmitAVSensor2D.hsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion_ArtificialViscosity2D.hsrc/pde/Burgers/PDEBurgers_ArtificialViscosity2D.hsrc/pde/PorousMedia/PDETwoPhase_ArtificialViscosity1D.hsrc/pde/ArtificialViscosity/AVSensor_ViscousFlux1D.hsrc/pde/ArtificialViscosity/AVSensor_ViscousFlux3D.hsrc/pde/NDConvert/PDENDConvertSpace3D.hsrc/pde/NDConvert/PDENDConvertSpace1D.h88c57424d8890bfb4f746d0c04575b8b2b831a491532740720000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduFixed continuous-param assumption for fluxViscous 2018-07-27 19:18:40 -060088c57424d8890bfb4f746d0c04575b8b2b831a49Fixed continuous-param assumption for fluxViscouseditsrc/pde/NDConvert/PDENDConvertSpaceTime2D.heditsrc/pde/NDConvert/PDENDConvertSpaceTime1D.heditsrc/pde/ArtificialViscosity/PDEmitAVSensor2D.heditsrc/pde/Sensor/PDESensorParameter1D.heditsrc/pde/NS/PDERANSSA2D.heditsrc/pde/ArtificialViscosity/AVSensor_ViscousFlux3D.heditsrc/pde/NDConvert/PDENDConvertSpace3D.heditsrc/pde/NS/PDEEulermitAVDiffusion3D.heditsrc/pde/ArtificialViscosity/PDEmitAVSensor3D.heditsrc/pde/ArtificialViscosity/AVSensor_ViscousFlux2D.heditsrc/pde/NS/PDEEulermitAVDiffusion2D.heditsrc/pde/NDConvert/PDENDConvertSpaceTime3D.heditsrc/pde/Burgers/PDEBurgers_ArtificialViscosity1D.heditsrc/pde/PorousMedia/PDETwoPhase_ArtificialViscosity1D.heditsrc/pde/PorousMedia/PDEBuckleyLeverett_ArtificialViscosity1D.heditsrc/pde/PorousMedia/PDETwoPhase_ArtificialViscosity2D.heditsrc/pde/NDConvert/PDENDConvertSpace2D.heditsrc/pde/Sensor/PDESensorParameter2D.heditsrc/pde/NS/PDEEulermitAVDiffusion1D.heditsrc/Discretization/DG/IntegrandInteriorTrace_DGBR2.heditsrc/pde/ArtificialViscosity/AVSensor_ViscousFlux1D.heditsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion_ArtificialViscosity2D.heditsrc/pde/Burgers/PDEBurgers_ArtificialViscosity2D.heditsrc/pde/NS/BCEulerArtificialViscosity3D.heditsrc/pde/ArtificialViscosity/PDEmitAVSensor1D.heditsrc/pde/NDConvert/PDENDConvertSpace1D.heditsrc/pde/NS/PDERANSSA3D.hsrc/SolutionTrek/Continuation/Homotopy/PDEHomotopy.hsrc/pde/NDConvert/PDENDConvertSpaceTime3D.htest/unit/pde/NDConvert/PDENDConvert1D_AD_ST_btest.cpptest/system/CodeConsistency/PDEmitAVSensor1D_Consistency_btest.cpptest/unit/pde/NDConvert/PDENDConvert3D_AD_btest.cpptest/unit/pde/PorousMedia/PDETwoPhase_ArtificialViscosity2D_btest.cpptest/unit/pde/NDConvert/PDENDConvert1D_AD_btest.cpptest/unit/pde/AdvectionDiffusion/PDEAdvectionDiffusion_ArtificialViscosity2D_btest.cpptest/unit/pde/Sensor/PDESensorParameter1D_btest.cpptest/unit/pde/NS/PDEEulermitAVDiffusion2D_btest.cpptest/unit/pde/NDConvert/PDENDConvert2D_AD_btest.cpptest/unit/pde/NS/PDEEulermitAVDiffusion3D_btest.cpptest/unit/pde/ArtificialViscosity/PDEmitAVSensor2D_btest.cpptest/unit/pde/PorousMedia/PDEBuckleyLeverett_ArtificialViscosity1D_btest.cppsrc/Discretization/FV_TPFA/IntegrandInteriorTrace_FV_TPFA.htest/unit/pde/PorousMedia/PDETwoPhase_ArtificialViscosity1D_btest.cpptest/unit/pde/Sensor/PDESensorParameter2D_btest.cpptest/unit/pde/NS/PDEEulermitAVDiffusion1D_btest.cpptest/unit/pde/ArtificialViscosity/PDEmitAVSensor1D_btest.cppaa4cc7c02204125a913382a66d3f15bd30f02cc91532750466000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduUnit tests passing with param bug fix 2018-07-27 22:01:06 -0600aa4cc7c02204125a913382a66d3f15bd30f02cc9Unit tests passing with param bug fixedittest/unit/pde/PorousMedia/PDEBuckleyLeverett_ArtificialViscosity1D_btest.cppeditsrc/Discretization/FV_TPFA/IntegrandInteriorTrace_FV_TPFA.hedittest/unit/pde/NDConvert/PDENDConvert3D_AD_btest.cppedittest/unit/pde/NS/PDEEulermitAVDiffusion1D_btest.cppedittest/unit/pde/Sensor/PDESensorParameter1D_btest.cppedittest/unit/pde/PorousMedia/PDETwoPhase_ArtificialViscosity2D_btest.cppedittest/unit/pde/NS/PDEEulermitAVDiffusion2D_btest.cppedittest/unit/pde/NDConvert/PDENDConvert1D_AD_ST_btest.cppedittest/unit/pde/NDConvert/PDENDConvert1D_AD_btest.cppedittest/unit/pde/NDConvert/PDENDConvert2D_AD_btest.cppedittest/unit/pde/ArtificialViscosity/PDEmitAVSensor2D_btest.cppedittest/unit/pde/PorousMedia/PDETwoPhase_ArtificialViscosity1D_btest.cppedittest/unit/pde/NS/PDEEulermitAVDiffusion3D_btest.cppedittest/system/CodeConsistency/PDEmitAVSensor1D_Consistency_btest.cppedittest/unit/pde/Sensor/PDESensorParameter2D_btest.cppeditsrc/pde/NDConvert/PDENDConvertSpaceTime3D.hedittest/unit/pde/AdvectionDiffusion/PDEAdvectionDiffusion_ArtificialViscosity2D_btest.cppedittest/unit/pde/ArtificialViscosity/PDEmitAVSensor1D_btest.cppeditsrc/SolutionTrek/Continuation/Homotopy/PDEHomotopy.hsrc/Adaptation/MOESS/ErrorModel.cpp866b2186821cdfd8a979348b383af01fb41e27191532816407000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed a nightly warning 2018-07-28 18:20:07 -0400866b2186821cdfd8a979348b383af01fb41e2719Fixed a nightly warningeditsrc/Adaptation/MOESS/ErrorModel.cppsrc/pde/NS/BCEulermitAVDiffusion1D.htest/sandbox/Solve1D_DGBR2_Line_Euler_ShuOsher_AV_ST_toy.cppsrc/pde/NS/BCEuler1D.hsrc/pde/NS/BCEuler1D.cppsrc/pde/NS/PDEEulermitAVDiffusion1D.htest/unit/IO/pde/NS/BCEuler1D_pattern.txttest/unit/pde/NS/BCEuler1D_btest.cpptest/sandbox/Solve1D_DGBR2_Line_Euler_Lax_AV_ST_toy.cppsrc/pde/NS/SolutionFunction_Euler1D.cppsrc/pde/NS/BCEuler1D_mitState_ST.htest/sandbox/Solve1D_DGBR2_Line_Euler_Sod_toy.cpptest/sandbox/Solve1D_DGBR2_Line_Euler_Sod_AV_ST_toy.cppsrc/pde/NS/SolutionFunction_Euler1D.hsrc/pde/NS/BCEuler1D_mitState.h366881e41cb5e23eaffb3aa7e9d816c68f741ade1532821667000https://acdl.mit.edu/csi/user/blscblscblsc@mit.edu1D spacetime shock problems 2018-07-28 17:47:47 -0600366881e41cb5e23eaffb3aa7e9d816c68f741ade1D spacetime shock problemsaddtest/sandbox/Solve1D_DGBR2_Line_Euler_Sod_AV_ST_toy.cppdeletetest/sandbox/Solve1D_DGBR2_Line_Euler_Sod_toy.cppaddtest/sandbox/Solve1D_DGBR2_Line_Euler_Lax_AV_ST_toy.cppaddtest/sandbox/Solve1D_DGBR2_Line_Euler_ShuOsher_AV_ST_toy.cppeditsrc/pde/NS/SolutionFunction_Euler1D.heditsrc/pde/NS/BCEuler1D_mitState.heditsrc/pde/NS/PDEEulermitAVDiffusion1D.heditsrc/pde/NS/BCEulermitAVDiffusion1D.heditsrc/pde/NS/SolutionFunction_Euler1D.cppeditsrc/pde/NS/BCEuler1D.heditsrc/pde/NS/BCEuler1D_mitState_ST.heditsrc/pde/NS/BCEuler1D.cppedittest/unit/IO/pde/NS/BCEuler1D_pattern.txtedittest/unit/pde/NS/BCEuler1D_btest.cppsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion_ArtificialViscosity2D.h4b5c5a1b4422577ab22db42a04d721105e355c691532833954000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduFormatting errors 2018-07-28 21:12:34 -06004b5c5a1b4422577ab22db42a04d721105e355c69Formatting errorseditsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion_ArtificialViscosity2D.hsrc/pde/ArtificialViscosity/AVSensor_ViscousFlux1D.hsrc/pde/NS/SolutionFunction_Euler1D.hbcac0eae7fc29947ddfa926126ec10466636acc11532875465000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduMore bug fix 2018-07-29 08:44:25 -0600bcac0eae7fc29947ddfa926126ec10466636acc1More bug fixeditsrc/pde/ArtificialViscosity/AVSensor_ViscousFlux1D.heditsrc/pde/NS/SolutionFunction_Euler1D.hsrc/Meshing/gmsh/XField_gmsh.cppsrc/pde/FullPotential/BCLinearizedIncompressiblePotential3D.hsrc/UserInterfaces/capsAIM/markWakeEdges.cppsrc/Meshing/refine/MesherInterface_refine_2D.cppsrc/UserInterfaces/capsAIM/sansLIPAIM.cppa24115b4b797372af52029b2080dbb4132ec60b21532911224000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdding hinge computation from CSM. Other minor cleanup. 2018-07-29 20:40:24 -0400a24115b4b797372af52029b2080dbb4132ec60b2Adding hinge computation from CSM. Other minor cleanup.editsrc/UserInterfaces/capsAIM/markWakeEdges.cppeditsrc/Meshing/refine/MesherInterface_refine_2D.cppeditsrc/Meshing/gmsh/XField_gmsh.cppeditsrc/pde/FullPotential/BCLinearizedIncompressiblePotential3D.heditsrc/UserInterfaces/capsAIM/sansLIPAIM.cpptest/system/IO/CodeConsistency/IBL/naca0004_ne78.txtsrc/pde/IBL/PDEIBL2D.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_p0_btest.cpptest/system/IO/CodeConsistency/IBL/naca0004_ne78_wake_a0.txttest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne78_a0_transition.txt7d7ffe2f5f355be9fc200826842527be1df1049c1532956647000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduIntermediate commit: working DG cut-cell IBL of various formulations. Now switching to try HDG 2018-07-30 09:17:27 -04007d7ffe2f5f355be9fc200826842527be1df1049cIntermediate commit: working DG cut-cell IBL of various formulations. Now switching to try HDGaddtest/system/IO/CodeConsistency/IBL/naca0004_ne78.txtaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne78_a0_transition.txteditsrc/pde/IBL/PDEIBL2D.haddtest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_p0_btest.cppaddtest/system/IO/CodeConsistency/IBL/naca0004_ne78_wake_a0.txtedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppsrc/Discretization/Galerkin/ResidualCell_Galerkin.htest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBLUniField_Panel_btest.cppsrc/Discretization/Galerkin/ResidualCell_Galerkin_CutCellTransitionIBL.hsrc/Discretization/Galerkin/JacobianCell_Galerkin_CutCellTransitionIBLUniField.htest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBLUniField_Panel_btest.cppsrc/Discretization/Galerkin/JacobianCell_Galerkin_CutCellTransitionIBL.hsrc/Discretization/Galerkin/IntegrandCell_Galerkin_CutCellTransitionIBLUniField.hsrc/Field/Element/ElementXFieldLine_Instantiate_2D.cppsrc/Discretization/Galerkin/JacobianCell_Galerkin_Param.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppsrc/Field/Element/GalerkinWeightedIntegral_New.htest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBL_Panel_btest.cppsrc/pde/IBL/PDEIBLUniField.htest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBL_Panel_btest.cppsrc/pde/NDConvert/PDENDConvertSpace2D.hsrc/Discretization/Galerkin/ResidualCell_Galerkin_CutCellTransitionIBLUniField.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppsrc/Discretization/Galerkin/JacobianCell_Galerkin_Param_CutCellTransitionIBLUniField.hsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppf75d9efb7ab7f226645243c8e1d854a8457ad2c81532958236000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRevert "Merge branch 'threeFieldIBL' into shunz/develop" This reverts commit 13871a91f1018c555b66fa1d703fcaba7fcd6c72, reversing changes made to e4f9b9838654ab1c62f374a916c431c0ef45645e. 2018-07-30 09:43:56 -0400f75d9efb7ab7f226645243c8e1d854a8457ad2c8Revert "Merge branch 'threeFieldIBL' into shunz/develop"editsrc/Field/Element/GalerkinWeightedIntegral_New.heditsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective.heditsrc/Discretization/Galerkin/ResidualCell_Galerkin_CutCellTransitionIBL.heditsrc/pde/IBL/PDEIBLUniField.hdeletetest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppeditsrc/Discretization/Galerkin/JacobianCell_Galerkin_CutCellTransitionIBL.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppdeletesrc/Discretization/Galerkin/IntegrandCell_Galerkin_CutCellTransitionIBLUniField.heditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBL_Panel_btest.cppeditsrc/Discretization/Galerkin/ResidualCell_Galerkin.heditsrc/pde/NDConvert/PDENDConvertSpace2D.hdeletetest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBLUniField_Panel_btest.cppdeletesrc/Discretization/Galerkin/JacobianCell_Galerkin_CutCellTransitionIBLUniField.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBL_Panel_btest.cppeditsrc/Discretization/Galerkin/JacobianCell_Galerkin_Param.hdeletesrc/Discretization/Galerkin/JacobianCell_Galerkin_Param_CutCellTransitionIBLUniField.hdeletesrc/Discretization/Galerkin/ResidualCell_Galerkin_CutCellTransitionIBLUniField.heditsrc/Field/Element/ElementXFieldLine_Instantiate_2D.cppdeletetest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBLUniField_Panel_btest.cppsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppsrc/Discretization/Galerkin/ResidualCell_Galerkin.htest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBLUniField_Panel_btest.cppsrc/Discretization/Galerkin/JacobianCell_Galerkin_CutCellTransitionIBLUniField.hsrc/Discretization/Galerkin/ResidualCell_Galerkin_CutCellTransitionIBL.htest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBLUniField_Panel_btest.cppsrc/Discretization/Galerkin/JacobianCell_Galerkin_CutCellTransitionIBL.hsrc/Field/Element/ElementXFieldLine_Instantiate_2D.cppsrc/Discretization/Galerkin/IntegrandCell_Galerkin_CutCellTransitionIBLUniField.hsrc/Discretization/Galerkin/JacobianCell_Galerkin_Param.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppsrc/Field/Element/GalerkinWeightedIntegral_New.htest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBL_Panel_btest.cppsrc/pde/IBL/PDEIBLUniField.htest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBL_Panel_btest.cppsrc/Discretization/Galerkin/ResidualCell_Galerkin_CutCellTransitionIBLUniField.hsrc/pde/NDConvert/PDENDConvertSpace2D.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppsrc/Discretization/Galerkin/JacobianCell_Galerkin_Param_CutCellTransitionIBLUniField.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective.h1468a3f584f5c4ca69c9d139db53174d5b6419471532962602000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRevert "Revert "Merge branch 'threeFieldIBL' into shunz/develop"" This reverts commit f75d9efb7ab7f226645243c8e1d854a8457ad2c8. 2018-07-30 10:56:42 -04001468a3f584f5c4ca69c9d139db53174d5b641947Revert "Revert "Merge branch 'threeFieldIBL' into shunz/develop""edittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBL_Panel_btest.cppeditsrc/Discretization/Galerkin/JacobianCell_Galerkin_CutCellTransitionIBL.heditsrc/Field/Element/GalerkinWeightedIntegral_New.heditsrc/pde/IBL/PDEIBLUniField.haddtest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBLUniField_Panel_btest.cppeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppaddsrc/Discretization/Galerkin/JacobianCell_Galerkin_CutCellTransitionIBLUniField.heditsrc/Field/Element/ElementXFieldLine_Instantiate_2D.cppaddtest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppeditsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective.haddsrc/Discretization/Galerkin/JacobianCell_Galerkin_Param_CutCellTransitionIBLUniField.haddsrc/Discretization/Galerkin/ResidualCell_Galerkin_CutCellTransitionIBLUniField.heditsrc/pde/NDConvert/PDENDConvertSpace2D.hedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBL_Panel_btest.cppeditsrc/Discretization/Galerkin/ResidualCell_Galerkin.heditsrc/Discretization/Galerkin/JacobianCell_Galerkin_Param.haddtest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBLUniField_Panel_btest.cppaddsrc/Discretization/Galerkin/IntegrandCell_Galerkin_CutCellTransitionIBLUniField.heditsrc/Discretization/Galerkin/ResidualCell_Galerkin_CutCellTransitionIBL.htest/system/IO/ErrorOrder/ErrorOrder_1D_HDG_Advection_MinTest.txtsrc/Discretization/HDG/Instantiate/AlgebraicEquationSet_HDG_AdvectionDiffusion1D_AUDUSUG.cpptest/system/Asymptotic/ErrorOrder_1D_HDG_Advection_btest.cpptest/system/Asymptotic/ErrorOrder_1D_HDG_AD_btest.cppsrc/Discretization/HDG/AlgebraicEquationSet_HDG.htest/system/IO/ErrorOrder/ErrorOrder_1D_HDG_Advection_FullTest.txte97ac7f3f2580073bfd77bbe255c8177553283111532972481000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded a pure advection HDG system test 2018-07-30 13:41:21 -0400e97ac7f3f2580073bfd77bbe255c817755328311Added a pure advection HDG system testedittest/system/Asymptotic/ErrorOrder_1D_HDG_AD_btest.cppaddtest/system/Asymptotic/ErrorOrder_1D_HDG_Advection_btest.cppeditsrc/Discretization/HDG/Instantiate/AlgebraicEquationSet_HDG_AdvectionDiffusion1D_AUDUSUG.cppaddtest/system/IO/ErrorOrder/ErrorOrder_1D_HDG_Advection_FullTest.txtaddtest/system/IO/ErrorOrder/ErrorOrder_1D_HDG_Advection_MinTest.txteditsrc/Discretization/HDG/AlgebraicEquationSet_HDG.hsrc/Discretization/HDG/ResidualCell_HDG.hsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.hsrc/Discretization/HDG/IntegrandCell_HDG.hc2fb59450c4f0b63708d8160f33db1f320f09ae11532975893000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactored residual HDG to handle tuple of qfld and afld 2018-07-30 14:38:13 -0400c2fb59450c4f0b63708d8160f33db1f320f09ae1Refactored residual HDG to handle tuple of qfld and afldeditsrc/Discretization/HDG/IntegrandCell_HDG.heditsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.heditsrc/Discretization/HDG/ResidualCell_HDG.hsrc/Discretization/HDG/JacobianBoundaryTrace_Dispatch_HDG.hsrc/Discretization/HDG/JacobianBoundaryCell_HDG_AuxiliaryVariable.hsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.hsrc/Discretization/HDG/ResidualBoundaryTrace_Dispatch_HDG.hsrc/Discretization/HDG/JacobianBoundaryTrace_HDG.h42f97b3382856ebf22d496f7c70b6a7fd875a3831532977808000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactored HDG boundary trace residual and jacobian to handle tuple of qfld and afld 2018-07-30 15:10:08 -040042f97b3382856ebf22d496f7c70b6a7fd875a383Refactored HDG boundary trace residual and jacobian to handle tuple of qfld and afldeditsrc/Discretization/HDG/JacobianBoundaryCell_HDG_AuxiliaryVariable.heditsrc/Discretization/HDG/ResidualBoundaryTrace_Dispatch_HDG.heditsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.heditsrc/Discretization/HDG/JacobianBoundaryTrace_Dispatch_HDG.heditsrc/Discretization/HDG/JacobianBoundaryTrace_HDG.hsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.hsrc/Discretization/HDG/AlgebraicEquationSet_HDG.hsrc/Discretization/HDG/IntegrandBoundaryTrace_LinearScalar_mitLG_HDG.h10438327732560167c699abacb110be9ae2439301532981153000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduminor edits 2018-07-30 16:05:53 -040010438327732560167c699abacb110be9ae243930minor editseditsrc/Discretization/HDG/AlgebraicEquationSet_HDG.heditsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.heditsrc/Discretization/HDG/IntegrandBoundaryTrace_LinearScalar_mitLG_HDG.hsrc/Adaptation/MOESS/NodalMetrics.cppsrc/Adaptation/MOESS/NLOPT/ImpliedMetric_Optimizer_NLOPT.cppsrc/Adaptation/MOESS/NodalMetrics.hsrc/Adaptation/MOESS/MOESS.hsrc/Adaptation/MeshAdapter.cppsrc/Adaptation/MOESS/MOESS.cppsrc/Meshing/avro/MesherInterface_avro.cppsrc/Meshing/avro/MesherInterface_avro.htest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cpp0f210d86a9fdc40da4dcaf2918d4728ed28ccb171532982769000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edutesting with avro 2018-07-30 16:32:49 -04000f210d86a9fdc40da4dcaf2918d4728ed28ccb17testing with avroeditsrc/Adaptation/MOESS/NodalMetrics.heditsrc/Adaptation/MeshAdapter.cppeditsrc/Meshing/avro/MesherInterface_avro.heditsrc/Adaptation/MOESS/NodalMetrics.cppeditsrc/Adaptation/MOESS/MOESS.cppeditsrc/Adaptation/MOESS/NLOPT/ImpliedMetric_Optimizer_NLOPT.cppeditsrc/Meshing/avro/MesherInterface_avro.cppedittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppeditsrc/Adaptation/MOESS/MOESS.hsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.h46c52a29352cb184bc9dd1af63eb8679247684501532984784000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduShouldn't have removed an include 2018-07-30 17:06:24 -040046c52a29352cb184bc9dd1af63eb867924768450Shouldn't have removed an includeeditsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.hsrc/pde/ArtificialViscosity/AVSensor_Source2D.hsrc/pde/NS/OutputEuler2D.hsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cpptest/unit/UnitGrids/XField3D_ForwardStep_Hex_X1.hsrc/pde/NS/BCEulermitAVDiffusion2D.htest/sandbox/Solve2D_DGBR2_Euler_ForwardStep_AV_ST_toy.cppsrc/pde/NS/Q2DConservative.htest/unit/UnitGrids/CMakeLists.txttest/sandbox/Solve1D_DGBR2_Line_Euler_ShuOsher_AV_ST_toy.cppsrc/pde/NS/BCEuler2D.hsrc/pde/NS/PDEEulermitAVDiffusion2D.hsrc/pde/NS/BCEuler2D_mitState.hsrc/pde/NS/Q2DEntropy.htest/unit/UnitGrids/XField3D_ForwardStep_Hex_X1.cppsrc/pde/NS/Q2DPrimitiveRhoPressure.htest/sandbox/Solve1D_DGBR2_Line_Euler_Lax_AV_ST_toy.cppsrc/pde/NS/BCEuler2D.cppsrc/pde/NS/BCEuler2D_Solution.cppsrc/pde/NS/SolutionFunction_NavierStokes2D.hsrc/pde/NS/Q2DPrimitiveSurrogate.htest/sandbox/Solve1D_DGBR2_Line_Euler_Sod_AV_ST_toy.cppsrc/pde/NS/SolutionFunction_Euler2D.hsrc/pde/NS/PDEEuler2D.hdb96d950a19d365b7f203943faf34a27301e47a71533013994000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduForward facing step unit grid and spacetime euler2d artificial viscosity 2018-07-30 23:13:14 -0600db96d950a19d365b7f203943faf34a27301e47a7Forward facing step unit grid and spacetime euler2d artificial viscosityaddtest/sandbox/Solve2D_DGBR2_Euler_ForwardStep_AV_ST_toy.cppeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppeditsrc/pde/NS/BCEulermitAVDiffusion2D.heditsrc/pde/NS/SolutionFunction_Euler2D.heditsrc/pde/NS/SolutionFunction_NavierStokes2D.hedittest/unit/UnitGrids/CMakeLists.txteditsrc/pde/NS/BCEuler2D_Solution.cppeditsrc/pde/NS/Q2DEntropy.heditsrc/pde/NS/Q2DConservative.haddtest/unit/UnitGrids/XField3D_ForwardStep_Hex_X1.cppeditsrc/pde/NS/BCEuler2D_mitState.heditsrc/pde/ArtificialViscosity/AVSensor_Source2D.heditsrc/pde/NS/OutputEuler2D.hedittest/sandbox/Solve1D_DGBR2_Line_Euler_ShuOsher_AV_ST_toy.cppedittest/sandbox/Solve1D_DGBR2_Line_Euler_Lax_AV_ST_toy.cppeditsrc/pde/NS/PDEEulermitAVDiffusion2D.heditsrc/pde/NS/BCEuler2D.cppeditsrc/pde/NS/BCEuler2D.heditsrc/pde/NS/PDEEuler2D.hedittest/sandbox/Solve1D_DGBR2_Line_Euler_Sod_AV_ST_toy.cppaddtest/unit/UnitGrids/XField3D_ForwardStep_Hex_X1.heditsrc/pde/NS/Q2DPrimitiveSurrogate.heditsrc/pde/NS/Q2DPrimitiveRhoPressure.htest/unit/UnitGrids/XField3D_ForwardStep_Hex_X1.cpp94ae7e68ea2f0ba508fb85526af39bf8a8042c261533014064000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduTurned off some debug output 2018-07-30 23:14:24 -060094ae7e68ea2f0ba508fb85526af39bf8a8042c26Turned off some debug outputedittest/unit/UnitGrids/XField3D_ForwardStep_Hex_X1.cpptest/sandbox/Solve2D_DGBR2_Euler_ForwardStep_AV_ST_toy.cpp55e07410af314b70fc41044ae6156a97030440e21533014563000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduPETSc option for spacetime forward facing step 2018-07-30 23:22:43 -060055e07410af314b70fc41044ae6156a97030440e2PETSc option for spacetime forward facing stepedittest/sandbox/Solve2D_DGBR2_Euler_ForwardStep_AV_ST_toy.cppsrc/Field/tools/for_each_InteriorTraceGroup_Cell.hsrc/Field/tools/for_each_GhostBoundaryTraceGroup_Cell.hsrc/Field/Field_DG_CellBase_impl.hsrc/Field/CountGhostNeighbors.hsrc/Field/FieldArea_DG_Cell_impl.hfe290181752a37cf71a1bb6e7a69a686edb809e21533040622000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduWork towards Zombie DOFs 2018-07-31 08:37:02 -0400fe290181752a37cf71a1bb6e7a69a686edb809e2Work towards Zombie DOFsaddsrc/Field/CountGhostNeighbors.heditsrc/Field/tools/for_each_InteriorTraceGroup_Cell.heditsrc/Field/FieldArea_DG_Cell_impl.haddsrc/Field/tools/for_each_GhostBoundaryTraceGroup_Cell.heditsrc/Field/Field_DG_CellBase_impl.hsrc/UserInterfaces/capsAIM/sansLIPAIM.cppsrc/Field/FieldArea_DG_Cell_impl.hsrc/Field/CountGhostNeighbors.hsrc/UserInterfaces/LIPSolver.cppc1f179ba9514f5a035fd21253cf2e60936a456b61533073273000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdates for LIP solver to use hinge lines 2018-07-31 17:41:13 -0400c1f179ba9514f5a035fd21253cf2e60936a456b6Updates for LIP solver to use hinge lineseditsrc/Field/FieldArea_DG_Cell_impl.heditsrc/Field/CountGhostNeighbors.heditsrc/UserInterfaces/capsAIM/sansLIPAIM.cppeditsrc/UserInterfaces/LIPSolver.cppsrc/UserInterfaces/LIPSolver.cppa2532d72d4d2d6faeb1e9fa3011653f74bc360a91533075318000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed inconsistency in LIPSolver sensitivity 2018-07-31 18:15:18 -0400a2532d72d4d2d6faeb1e9fa3011653f74bc360a9Fixed inconsistency in LIPSolver sensitivityeditsrc/UserInterfaces/LIPSolver.cpptest/sandbox/Solve2D_DGBR2_Euler_ForwardStep_AV_ST_toy.cppc91721f97f0440466085d65dcd9a8e6714f67cb91533092820000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduFixed PETSc setup in step case 2018-07-31 21:07:00 -0600c91721f97f0440466085d65dcd9a8e6714f67cb9Fixed PETSc setup in step caseedittest/sandbox/Solve2D_DGBR2_Euler_ForwardStep_AV_ST_toy.cpptest/unit/UnitGrids/XField3D_ForwardStep_Hex_X1_btest.cpp9335099999e418b0cca4ba3f6ce8a92f6c3cf7871533094788000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduUnit test for forward facing step grid 2018-07-31 21:39:48 -06009335099999e418b0cca4ba3f6ce8a92f6c3cf787Unit test for forward facing step gridaddtest/unit/UnitGrids/XField3D_ForwardStep_Hex_X1_btest.cpptest/unit/IO/pde/NS/BCEuler2D_pattern.txttest/unit/UnitGrids/XField3D_ForwardStep_Hex_X1.cpptest/unit/pde/NS/BCEuler2D_btest.cpp81fb89368a2ca010e069fd09cda8c6e4afc9d0701533095900000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduNew Euler BC unit tests 2018-07-31 21:58:20 -060081fb89368a2ca010e069fd09cda8c6e4afc9d070New Euler BC unit testsedittest/unit/IO/pde/NS/BCEuler2D_pattern.txtedittest/unit/UnitGrids/XField3D_ForwardStep_Hex_X1.cppedittest/unit/pde/NS/BCEuler2D_btest.cppsrc/Field/CountGhostNeighbors.h23fa5b0ee4c3f4dc7f625f632b043b8bd8d3f7311533130128000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed index bug for Zombies 2018-08-01 09:28:48 -040023fa5b0ee4c3f4dc7f625f632b043b8bd8d3f731Fixed index bug for Zombieseditsrc/Field/CountGhostNeighbors.hsrc/BasisFunction/CanonicalTraceToCell.hsrc/Discretization/HDG/ResidualInteriorTrace_HDG.hsrc/Field/CellToTraceAssociativity.h1c43289d23d410f720d080e70602fb6425c7d0bc1533132123000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.educommenting and formatting 2018-08-01 10:02:03 -04001c43289d23d410f720d080e70602fb6425c7d0bccommenting and formattingeditsrc/Field/CellToTraceAssociativity.heditsrc/BasisFunction/CanonicalTraceToCell.heditsrc/Discretization/HDG/ResidualInteriorTrace_HDG.hCMakeInclude/Builds/BuildTETGEN.cmake337c073caf39389c514d62268590c8b97dae19d31533137794000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduTweak for building tetgen with MSYS 2018-08-01 11:36:34 -0400337c073caf39389c514d62268590c8b97dae19d3Tweak for building tetgen with MSYSeditCMakeInclude/Builds/BuildTETGEN.cmakesrc/Field/Element/GalerkinWeightedIntegral_New.hsrc/Discretization/HDG/ResidualCell_HDG.hsrc/Field/Element/ElementLine.hsrc/Discretization/Galerkin/ResidualInteriorTrace_Galerkin.hsrc/Discretization/HDG/ResidualInteriorTrace_HDG.hsrc/Discretization/IntegrateInteriorTraceGroups_FieldTrace.h238eb28c21a4b34322205ebe7c765db43d1eaf3d1533154259000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduMinor edits on existing established code 2018-08-01 16:10:59 -0400238eb28c21a4b34322205ebe7c765db43d1eaf3dMinor edits on existing established codeeditsrc/Discretization/Galerkin/ResidualInteriorTrace_Galerkin.heditsrc/Discretization/HDG/ResidualInteriorTrace_HDG.heditsrc/Field/Element/GalerkinWeightedIntegral_New.heditsrc/Discretization/HDG/ResidualCell_HDG.heditsrc/Field/Element/ElementLine.heditsrc/Discretization/IntegrateInteriorTraceGroups_FieldTrace.hsrc/Discretization/HDG/ResidualInteriorTrace_HDGAdvective.hsrc/Discretization/HDG/IntegrandInteriorTrace_HDGAdvective.h5361dcf3f39b7904811698324d7b317f377f49c11533154395000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edudrafted interior trace integrand and residual for HDGAdvective 2018-08-01 16:13:15 -04005361dcf3f39b7904811698324d7b317f377f49c1drafted interior trace integrand and residual for HDGAdvectiveaddsrc/Discretization/HDG/ResidualInteriorTrace_HDGAdvective.haddsrc/Discretization/HDG/IntegrandInteriorTrace_HDGAdvective.hsrc/Meshing/FeFloa/MesherInterface_FeFloa.hsrc/Meshing/refine/MesherInterface_refineParams.cppsrc/Meshing/refine/MesherInterface_refine.hsrc/Meshing/refine/MesherInterface_refine.cppsrc/Meshing/refine/MesherInterface_refine_2D.cpptest/unit/Meshing/refine/refine3D_btest.cpp30c239d40c86ab6c6484ac82cf41ba320c912e3d1533175183000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded system call option for refine 2018-08-01 21:59:43 -040030c239d40c86ab6c6484ac82cf41ba320c912e3dAdded system call option for refineeditsrc/Meshing/FeFloa/MesherInterface_FeFloa.heditsrc/Meshing/refine/MesherInterface_refine.heditsrc/Meshing/refine/MesherInterface_refine.cppeditsrc/Meshing/refine/MesherInterface_refineParams.cppedittest/unit/Meshing/refine/refine3D_btest.cppeditsrc/Meshing/refine/MesherInterface_refine_2D.cpptest/unit/UnitGrids/CMakeLists.txttest/unit/UnitGrids/XField3D_ForwardStep_Hex_X1.cpptest/unit/UnitGrids/XField2D_ForwardStep_Quad_X1.htest/sandbox/Solve2D_DGBR2_Quad_Euler_ForwardFacingStep_AV_BDF_toy.cpptest/unit/UnitGrids/XField2D_ForwardStep_Quad_X1.cpptest/sandbox/Solve2D_DGBR2_Euler_ForwardStep_AV_ST_toy.cppef1e57c3cb7084b44b582b61ef638f13982472561533185097000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduMaybe BDF case for forward facing step 2018-08-01 22:44:57 -0600ef1e57c3cb7084b44b582b61ef638f1398247256Maybe BDF case for forward facing stepedittest/sandbox/Solve2D_DGBR2_Euler_ForwardStep_AV_ST_toy.cppaddtest/unit/UnitGrids/XField2D_ForwardStep_Quad_X1.hedittest/unit/UnitGrids/CMakeLists.txtedittest/unit/UnitGrids/XField3D_ForwardStep_Hex_X1.cppaddtest/sandbox/Solve2D_DGBR2_Quad_Euler_ForwardFacingStep_AV_BDF_toy.cppaddtest/unit/UnitGrids/XField2D_ForwardStep_Quad_X1.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppsrc/Meshing/refine/MesherInterface_refine.hsrc/Adaptation/MeshAdapter.cppsrc/Meshing/refine/XField_refine.hsrc/Adaptation/MeshAdapter.hsrc/Meshing/refine/MesherInterface_refineParams.cppCMakeLists.txtsrc/Meshing/refine/MesherInterface_refine.cppsrc/Meshing/refine/CMakeLists.txt01cd749cf181caa46dde6662d6ad159e9624623c1533209593000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdates for calling refine with a system call 2018-08-02 07:33:13 -040001cd749cf181caa46dde6662d6ad159e9624623cUpdates for calling refine with a system calleditCMakeLists.txtedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppeditsrc/Meshing/refine/MesherInterface_refine.cppeditsrc/Adaptation/MeshAdapter.cppeditsrc/Meshing/refine/CMakeLists.txteditsrc/Meshing/refine/XField_refine.heditsrc/Meshing/refine/MesherInterface_refine.heditsrc/Adaptation/MeshAdapter.heditsrc/Meshing/refine/MesherInterface_refineParams.cppsrc/Discretization/Galerkin/JacobianInteriorTrace_Galerkin.h1667db6f8fd65fe6902f7295361e6ce10b75c0671533222447000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduMinor edit 2018-08-02 11:07:27 -04001667db6f8fd65fe6902f7295361e6ce10b75c067Minor editeditsrc/Discretization/Galerkin/JacobianInteriorTrace_Galerkin.hsrc/Discretization/HDG/JacobianInteriorTrace_HDGAdvective.hsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.hsrc/Discretization/HDG/IntegrandInteriorTrace_HDGAdvective.hsrc/Discretization/HDG/ResidualInteriorTrace_HDGAdvective.h528716b8b50db6b53ef6479e0949d14d6cd5abad1533222577000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactored/completed HDGAdvective interior trace machinery (integrand, residual, jacobian) 2018-08-02 11:09:37 -0400528716b8b50db6b53ef6479e0949d14d6cd5abadRefactored/completed HDGAdvective interior trace machinery (integrand, residual, jacobian)editsrc/Discretization/HDG/ResidualInteriorTrace_HDGAdvective.haddsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.heditsrc/Discretization/HDG/IntegrandInteriorTrace_HDGAdvective.haddsrc/Discretization/HDG/JacobianInteriorTrace_HDGAdvective.hsrc/Discretization/HDG/IntegrandBoundaryTrace_None_HDGAdvective.hsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.hsrc/Discretization/HDG/IntegrandBoundaryTrace_LinearScalar_mitLG_HDGAdvective.hsrc/Discretization/HDG/IntegrandBoundaryTrace_LinearScalar_sansLG_HDGAdvective.hsrc/Discretization/HDG/ResidualBoundaryTrace_FieldTrace_HDGAdvective.hsrc/Discretization/HDG/ResidualBoundaryTrace_Dispatch_HDG.hsrc/Discretization/HDG/ResidualBoundaryTrace_Dispatch_HDGAdvective.hsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective.hsrc/Discretization/HDG/ResidualBoundaryTrace_HDGAdvective.hsrc/Discretization/HDG/Integrand_HDG_fwd.hsrc/Discretization/HDG/IntegrandBoundaryTrace_Flux_mitState_HDGAdvective.h075d89209dad853079ee5109441cab9ab2d8d12d1533223105000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduResidualBoundaryTrace stuff compiling for HDGAdvective 2018-08-02 11:18:25 -0400075d89209dad853079ee5109441cab9ab2d8d12dResidualBoundaryTrace stuff compiling for HDGAdvectiveaddsrc/Discretization/HDG/ResidualBoundaryTrace_Dispatch_HDGAdvective.haddsrc/Discretization/HDG/IntegrandBoundaryTrace_None_HDGAdvective.haddsrc/Discretization/HDG/ResidualBoundaryTrace_HDGAdvective.haddsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective.haddsrc/Discretization/HDG/IntegrandBoundaryTrace_LinearScalar_sansLG_HDGAdvective.heditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.haddsrc/Discretization/HDG/IntegrandBoundaryTrace_Flux_mitState_HDGAdvective.heditsrc/Discretization/HDG/ResidualBoundaryTrace_Dispatch_HDG.haddsrc/Discretization/HDG/ResidualBoundaryTrace_FieldTrace_HDGAdvective.heditsrc/Discretization/HDG/Integrand_HDG_fwd.haddsrc/Discretization/HDG/IntegrandBoundaryTrace_LinearScalar_mitLG_HDGAdvective.htest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cpptest/unit/Meshing/refine/CMakeLists.txtsrc/Meshing/refine/MesherInterface_refine.cpptest/unit/Adaptation/MOESS/TAO/CMakeLists.txttest/unit/Adaptation/MOESS/CMakeLists.txttest/unit/Meshing/refine/refine3D_btest.cpp47646bad15e680ab6ba97fb2f7645c7f81f86aa31533227346000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMore refine fixes 2018-08-02 12:29:06 -040047646bad15e680ab6ba97fb2f7645c7f81f86aa3More refine fixesedittest/unit/Adaptation/MOESS/TAO/CMakeLists.txteditsrc/Meshing/refine/MesherInterface_refine.cppedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppedittest/unit/Adaptation/MOESS/CMakeLists.txtedittest/unit/Meshing/refine/CMakeLists.txtedittest/unit/Meshing/refine/refine3D_btest.cppsrc/UserInterfaces/capsAIM/sansLIPAIM.cpptest/system/Adaptation/CMakeLists.txt0579341590839099bd0463402e1d786056025bd21533253056000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduOne more refine fix. And some sansLIPAIM fixes. 2018-08-02 19:37:36 -04000579341590839099bd0463402e1d786056025bd2One more refine fix. And some sansLIPAIM fixes.editsrc/UserInterfaces/capsAIM/sansLIPAIM.cppedittest/system/Adaptation/CMakeLists.txttest/unit/Meshing/refine/refine3D_btest.cppcc6d1e9042b39a7038af7ac5adae8f82ba69a4451533253363000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMissing include 2018-08-02 19:42:43 -0400cc6d1e9042b39a7038af7ac5adae8f82ba69a445Missing includeedittest/unit/Meshing/refine/refine3D_btest.cpptest/unit/Meshing/refine/refine3D_btest.cppc3bd5e141021f96c7d25973ef61071b82d2057111533257709000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduCorrect missing include 2018-08-02 20:55:09 -0400c3bd5e141021f96c7d25973ef61071b82d205711Correct missing includeedittest/unit/Meshing/refine/refine3D_btest.cppsrc/UserInterfaces/capsAIM/sansLIPAIM.cpp8b448d171c8b2525104c95b1f0fd6da76e3811fd1533314149000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMinor fix 2018-08-03 12:35:49 -04008b448d171c8b2525104c95b1f0fd6da76e3811fdMinor fixeditsrc/UserInterfaces/capsAIM/sansLIPAIM.cppsrc/Discretization/HDG/JacobianInteriorTrace_HDGAdvective.hsrc/Discretization/Galerkin/JacobianBoundaryTrace_Galerkin.hsrc/Discretization/HDG/IntegrandInteriorTrace_HDGAdvective.h6577b07cd569b67040b66b37ea6733accd7b92d81533325896000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactored interior trace machinery for HDGAdvective 2018-08-03 15:51:36 -04006577b07cd569b67040b66b37ea6733accd7b92d8Refactored interior trace machinery for HDGAdvectiveeditsrc/Discretization/Galerkin/JacobianBoundaryTrace_Galerkin.heditsrc/Discretization/HDG/JacobianInteriorTrace_HDGAdvective.heditsrc/Discretization/HDG/IntegrandInteriorTrace_HDGAdvective.htest/system/Asymptotic/ErrorOrder_1D_HDGAdvective_Advection_btest.cppsrc/Discretization/HDG/IntegrandBoundaryTrace_None_HDGAdvective.hsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.hsrc/Discretization/HDG/ResidualBoundaryTrace_FieldTrace_HDGAdvective.hsrc/Discretization/HDG/IntegrandBoundaryTrace_LinearScalar_sansLG_HDGAdvective.hsrc/Discretization/HDG/ResidualBoundaryTrace_HDGAdvective.hsrc/Discretization/HDG/JacobianBoundaryTrace_Dispatch_HDGAdvective.hsrc/Discretization/HDG/JacobianBoundaryTrace_HDGAdvective.hsrc/Discretization/HDG/JacobianBoundaryTrace_FieldTrace_HDGAdvective.hsrc/Discretization/HDG/IntegrandBoundaryTrace_Flux_mitState_HDGAdvective.h68174bdd7f8de9fcddcdcf413af899f5259228a01533326176000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduHDGAdvective equation set compiiles now with residuals and jacobians 2018-08-03 15:56:16 -040068174bdd7f8de9fcddcdcf413af899f5259228a0HDGAdvective equation set compiiles now with residuals and jacobiansaddsrc/Discretization/HDG/JacobianBoundaryTrace_HDGAdvective.heditsrc/Discretization/HDG/ResidualBoundaryTrace_FieldTrace_HDGAdvective.haddsrc/Discretization/HDG/JacobianBoundaryTrace_Dispatch_HDGAdvective.heditsrc/Discretization/HDG/IntegrandBoundaryTrace_Flux_mitState_HDGAdvective.heditsrc/Discretization/HDG/IntegrandBoundaryTrace_LinearScalar_sansLG_HDGAdvective.heditsrc/Discretization/HDG/IntegrandBoundaryTrace_None_HDGAdvective.heditsrc/Discretization/HDG/ResidualBoundaryTrace_HDGAdvective.haddsrc/Discretization/HDG/JacobianBoundaryTrace_FieldTrace_HDGAdvective.haddtest/system/Asymptotic/ErrorOrder_1D_HDGAdvective_Advection_btest.cppeditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.hsrc/Discretization/HDG/IntegrandBoundaryTrace_Flux_mitState_HDGAdvective.hsrc/Discretization/HDG/ResidualInteriorTrace_HDGAdvective.h9180fce28758b2fd234ed36682a661ef41f93aff1533330929000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduminor refactoring 2018-08-03 17:15:29 -04009180fce28758b2fd234ed36682a661ef41f93affminor refactoringeditsrc/Discretization/HDG/IntegrandBoundaryTrace_Flux_mitState_HDGAdvective.heditsrc/Discretization/HDG/ResidualInteriorTrace_HDGAdvective.htest/system/Asymptotic/ErrorOrder_1D_HDGAdvective_Advection_btest.cppsrc/Discretization/HDG/IntegrandInteriorTrace_HDGAdvective.htest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBL_Panel_btest.cppsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion1D.hsrc/pde/AnalyticFunction/ScalarFunction1D.hsrc/Discretization/HDG/JacobianInteriorTrace_HDGAdvective.hsrc/Discretization/HDG/IntegrandBoundaryTrace_Flux_mitState_HDGAdvective.hc27d889bcefb85d1f6a5c24b504b9d6aed9a6bd61533404787000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduCleaned up HDGAdvective test case, and some other minor refactoring 2018-08-04 13:46:27 -0400c27d889bcefb85d1f6a5c24b504b9d6aed9a6bd6Cleaned up HDGAdvective test case, and some other minor refactoringeditsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion1D.hedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBL_Panel_btest.cppeditsrc/Discretization/HDG/IntegrandBoundaryTrace_Flux_mitState_HDGAdvective.heditsrc/Discretization/HDG/IntegrandInteriorTrace_HDGAdvective.hedittest/system/Asymptotic/ErrorOrder_1D_HDGAdvective_Advection_btest.cppeditsrc/pde/AnalyticFunction/ScalarFunction1D.heditsrc/Discretization/HDG/JacobianInteriorTrace_HDGAdvective.hsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.hsrc/Discretization/HDG/IntegrandInteriorTrace_HDGAdvective.htest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Advection_btest.cppsrc/Discretization/HDG/ResidualInteriorTrace_HDGAdvective.hsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective.hsrc/Discretization/HDG/JacobianInteriorTrace_HDGAdvective.hsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.h2c190d850f5da0a5fa44f6bde738cdbe926875ac1533493541000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFound and fixed a bug when conducting ping test: forgot to set qIfldElemTrace. Other minor refactoring 2018-08-05 14:25:41 -04002c190d850f5da0a5fa44f6bde738cdbe926875acFound and fixed a bug when conducting ping test: forgot to set qIfldElemTrace. Other minor refactoringeditsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.heditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.haddtest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Advection_btest.cppeditsrc/Discretization/HDG/IntegrandInteriorTrace_HDGAdvective.heditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective.heditsrc/Discretization/HDG/JacobianInteriorTrace_HDGAdvective.heditsrc/Discretization/HDG/ResidualInteriorTrace_HDGAdvective.hsrc/Discretization/HDG/JacobianBoundaryTrace_HDGAdvective.hf1e7aefc5fca3c4d566b61c724f3fe7c1110e2051533495971000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduBug fix in HDGAdvective boundary jacobian 2018-08-05 15:06:11 -0400f1e7aefc5fca3c4d566b61c724f3fe7c1110e205Bug fix in HDGAdvective boundary jacobianeditsrc/Discretization/HDG/JacobianBoundaryTrace_HDGAdvective.htest/system/Asymptotic/ErrorOrder_1D_HDGAdvective_Advection_btest.cppsrc/Discretization/HDG/Instantiate/AlgebraicEquationSet_HDGAdvective_Advection1D_AUSU.cppsrc/Discretization/HDG/IntegrandBoundaryTrace_None_HDGAdvective.hsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.htest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Advection_btest.cppsrc/Discretization/CMakeLists.txttest/system/IO/ErrorOrder/ErrorOrder_1D_HDGAdvective_Advection_FullTest.txttest/system/IO/ErrorOrder/ErrorOrder_1D_HDGAdvective_Advection_MinTest.txtsrc/Discretization/HDG/IntegrandBoundaryTrace_Flux_mitState_HDGAdvective.hf7a9f6b324be075339c7c089ee530d883efe64a81533496934000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduCompleted ping tests and ErrorOrder test for HDGAdvective (pure advection with source) 2018-08-05 15:22:14 -0400f7a9f6b324be075339c7c089ee530d883efe64a8Completed ping tests and ErrorOrder test for HDGAdvective (pure advection with source)editsrc/Discretization/HDG/IntegrandBoundaryTrace_Flux_mitState_HDGAdvective.haddsrc/Discretization/HDG/Instantiate/AlgebraicEquationSet_HDGAdvective_Advection1D_AUSU.cppaddtest/system/IO/ErrorOrder/ErrorOrder_1D_HDGAdvective_Advection_FullTest.txteditsrc/Discretization/HDG/IntegrandBoundaryTrace_None_HDGAdvective.hedittest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Advection_btest.cppaddtest/system/IO/ErrorOrder/ErrorOrder_1D_HDGAdvective_Advection_MinTest.txtedittest/system/Asymptotic/ErrorOrder_1D_HDGAdvective_Advection_btest.cppeditsrc/Discretization/CMakeLists.txteditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.hsrc/UserInterfaces/LIPSolver.hsrc/Meshing/TetGen/makeTetGenModel.cppsrc/UserInterfaces/capsAIM/sansLIPAIM.cppsrc/UserInterfaces/LIPSolver.cpp0225f4b31491885a501fdc22b389fd7137bcab131533513701000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMade the volume generator option for sansLIP. 2018-08-05 20:01:41 -04000225f4b31491885a501fdc22b389fd7137bcab13Made the volume generator option for sansLIP.editsrc/UserInterfaces/LIPSolver.heditsrc/UserInterfaces/LIPSolver.cppeditsrc/UserInterfaces/capsAIM/sansLIPAIM.cppeditsrc/Meshing/TetGen/makeTetGenModel.cppsrc/UserInterfaces/LIPSolver.h9221e4785ae6c48008f96fd6f16d730669e181261533517911000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduDefault meshesr for sansLIP 2018-08-05 21:11:51 -04009221e4785ae6c48008f96fd6f16d730669e18126Default meshesr for sansLIPeditsrc/UserInterfaces/LIPSolver.htest/unit/UnitGrids/CMakeLists.txttest/sandbox/Adapt2D_DGBR2_RANSSA_Joukowski_UROP_toy.cpptest/sandbox/duct_meshing_UROP_toy.cpptest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_X1.cpptest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_X1.h59fe31f3d96d585436f5ff15f7ed1d09d74c27ea1533570194000https://acdl.mit.edu/csi/user/jzavalajzavalajzavala@mit.eduAdded Lagrange-basis duct mesh creator and corresponding sandbox test file. Minor changes on Adapt2D toy file. 2018-08-06 11:43:14 -040059fe31f3d96d585436f5ff15f7ed1d09d74c27eaAdded Lagrange-basis duct mesh creator and corresponding sandbox test file.edittest/unit/UnitGrids/CMakeLists.txtaddtest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_X1.cppaddtest/sandbox/duct_meshing_UROP_toy.cppaddtest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_X1.hedittest/sandbox/Adapt2D_DGBR2_RANSSA_Joukowski_UROP_toy.cppsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective_impl.hsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.htest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_NACA0004_LamiBL_btest.cppa011b02bbaefbe2f0e8edb83e7ac1daf4a1edb0c1533581866000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduminor refactoring 2018-08-06 14:57:46 -0400a011b02bbaefbe2f0e8edb83e7ac1daf4a1edb0cminor refactoringeditsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective_impl.heditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.hedittest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_NACA0004_LamiBL_btest.cppsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective.htest/system/Asymptotic/ErrorOrder_1D_HDGAdvective_Advection_btest.cppsrc/Discretization/HDG/Instantiate/AlgebraicEquationSet_HDGAdvective_Advection1D_AUSU.cppsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.htest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Advection_btest.cpp264c092e145166ddf4bb97c60d3efd71fe5d09771533589052000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded discretization tag template to HDGAdvective AES class 2018-08-06 16:57:32 -0400264c092e145166ddf4bb97c60d3efd71fe5d0977Added discretization tag template to HDGAdvective AES classedittest/system/Asymptotic/ErrorOrder_1D_HDGAdvective_Advection_btest.cppeditsrc/Discretization/HDG/Instantiate/AlgebraicEquationSet_HDGAdvective_Advection1D_AUSU.cppeditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.heditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective.hedittest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Advection_btest.cppsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective.hsrc/Discretization/Galerkin/IntegrandCell_ProjectFunction.hsrc/Discretization/HDG/IntegrandInteriorTrace_HDGAdvective.hsrc/Discretization/HDG/Integrand_HDG_fwd.hafdf803b72daf2b69b3bd695c438df9ed98498ef1533597786000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduGeneralized HDGAdvective interior trace integrand class 2018-08-06 19:23:06 -0400afdf803b72daf2b69b3bd695c438df9ed98498efGeneralized HDGAdvective interior trace integrand classeditsrc/Discretization/HDG/IntegrandInteriorTrace_HDGAdvective.heditsrc/Discretization/Galerkin/IntegrandCell_ProjectFunction.heditsrc/Discretization/HDG/Integrand_HDG_fwd.heditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective.hsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective.htest/system/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_NACA0004_LamiBL_btest.cppsrc/pde/IBL/BCIBL2D.hsrc/Discretization/HDG/IntegrandInteriorTrace_HDGAdvective.hsrc/pde/IBL/BCIBL2D.cppsrc/Field/FieldLine_DG_Trace_Instantiate_2D.cppa764b2d7b7bc49ccc6ab62d405e8f8cec4105f1c1533600296000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduGot HDGAdvective cell and interior trace to compile 2018-08-06 20:04:56 -0400a764b2d7b7bc49ccc6ab62d405e8f8cec4105f1cGot HDGAdvective cell and interior trace to compileeditsrc/Discretization/HDG/IntegrandInteriorTrace_HDGAdvective.heditsrc/pde/IBL/BCIBL2D.cppeditsrc/pde/IBL/BCIBL2D.heditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective.haddtest/system/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_NACA0004_LamiBL_btest.cppeditsrc/Field/FieldLine_DG_Trace_Instantiate_2D.cppsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective.htest/system/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_NACA0004_LamiBL_btest.cppsrc/pde/IBL/BCIBL2D.hsrc/Discretization/HDG/IntegrandBoundaryTrace_None_HDGAdvective.hdb522687031c981302d3472001af2dba5e9054c21533602914000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactored None BC for HDGAdvective 2018-08-06 20:48:34 -0400db522687031c981302d3472001af2dba5e9054c2Refactored None BC for HDGAdvectiveeditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective.heditsrc/Discretization/HDG/IntegrandBoundaryTrace_None_HDGAdvective.heditsrc/pde/IBL/BCIBL2D.hedittest/system/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_NACA0004_LamiBL_btest.cppsrc/UserInterfaces/capsAIM/sansLIPAIM.cppcde165f7c1934620a3e278dd374fe4e4daea89361533606946000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduWorking on a bug in sansLIPAIM 2018-08-06 21:55:46 -0400cde165f7c1934620a3e278dd374fe4e4daea8936Working on a bug in sansLIPAIMeditsrc/UserInterfaces/capsAIM/sansLIPAIM.cpptest/unit/Discretization/HDG/CMakeLists.txttest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Line_IBL_airfoilOnly_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_IBL_Panel_btest.cpp82a621ba7296e8f0fa49e53daa7d161284e3665c1533607614000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded ping test to HDGAdvective for uncoupled IBL on airfoil only 2018-08-06 22:06:54 -040082a621ba7296e8f0fa49e53daa7d161284e3665cAdded ping test to HDGAdvective for uncoupled IBL on airfoil onlyedittest/unit/Discretization/HDG/CMakeLists.txtedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_IBL_Panel_btest.cppaddtest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Line_IBL_airfoilOnly_btest.cppsrc/UserInterfaces/capsAIM/sansLIPAIM.cppbae280da991f1c9247e653892f234047b348086e1533609996000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.edusansLIPAIM fix 2018-08-06 22:46:36 -0400bae280da991f1c9247e653892f234047b348086esansLIPAIM fixeditsrc/UserInterfaces/capsAIM/sansLIPAIM.cppsrc/UserInterfaces/capsAIM/sansLIPAIM.cpp102746becb3f94db76a717a6bd5b0834b64c274a1533616104000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed sansLIP data transfer with hinge bodies 2018-08-07 00:28:24 -0400102746becb3f94db76a717a6bd5b0834b64c274aFixed sansLIP data transfer with hinge bodieseditsrc/UserInterfaces/capsAIM/sansLIPAIM.cppsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.h2ca13073ba298092d2fe326b25e4e4727718ff521533649886000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduUse hacky isValidState checks for HDGAdvective: not checking trace variables yet 2018-08-07 09:51:26 -04002ca13073ba298092d2fe326b25e4e4727718ff52Use hacky isValidState checks for HDGAdvective: not checking trace variables yeteditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.htest/sandbox/Solve2D_DGAdvective_Triangle_Euler_SmoothBump_toy.cpptest/sandbox/duct_meshing_UROP_toy.cpptest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_X1.cpptest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_X1.h4f469ead90d00e5399355ddd40c3b7b065210eaa1533654720000https://acdl.mit.edu/csi/user/jzavalajzavalajzavala@mit.eduFixed formatting errors. 2018-08-07 11:12:00 -04004f469ead90d00e5399355ddd40c3b7b065210eaaFixed formatting errors.edittest/sandbox/duct_meshing_UROP_toy.cppedittest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_X1.hedittest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_X1.cppedittest/sandbox/Solve2D_DGAdvective_Triangle_Euler_SmoothBump_toy.cppsrc/pde/IBL/PDEIBL2D.cppsrc/Discretization/HDG/IntegrandInteriorTrace_HDGAdvective.hsrc/pde/IBL/PDEIBL2D.hsrc/Discretization/HDG/IntegrandBoundaryTrace_None_HDGAdvective.hsrc/pde/IBL/PDEIBL2D_impl.htest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_NACA0004_LamiBL_btest.cpptest/system/IO/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_naca0004_ne64_p1_airfoil_Test_DGvsHDG.txttest/system/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_NACA0004_LamiBL_btest.cppsrc/pde/NDConvert/PDENDConvertSpace2D.h922e1a8d95f7a960cda95f56bddec9eb3a54a65c1533666307000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduHDGAdvective uncoupled IBL (with airfoil only) now works and matches DG IBL 2018-08-07 14:25:07 -0400922e1a8d95f7a960cda95f56bddec9eb3a54a65cHDGAdvective uncoupled IBL (with airfoil only) now works and matches DG IBLeditsrc/pde/IBL/PDEIBL2D.cppedittest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_NACA0004_LamiBL_btest.cppeditsrc/Discretization/HDG/IntegrandInteriorTrace_HDGAdvective.hedittest/system/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_NACA0004_LamiBL_btest.cppaddtest/system/IO/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_naca0004_ne64_p1_airfoil_Test_DGvsHDG.txteditsrc/pde/NDConvert/PDENDConvertSpace2D.haddsrc/pde/IBL/PDEIBL2D_impl.heditsrc/pde/IBL/PDEIBL2D.heditsrc/Discretization/HDG/IntegrandBoundaryTrace_None_HDGAdvective.htest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Line_IBL_airfoilOnly_btest.cpp10eec08dbea101cf6e0aaec5beb8e404f0da7adf1533666379000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed an include 2018-08-07 14:26:19 -040010eec08dbea101cf6e0aaec5beb8e404f0da7adfFixed an includeedittest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Line_IBL_airfoilOnly_btest.cppsrc/Adaptation/MOESS/NLOPT/MOESS_Metric_Optimizer_NLOPT.cpptest/sandbox/CMakeLists.txtsrc/Meshing/Metric/MetricOps.hsrc/Meshing/Adaptive/AnalyticMetrics/MetricField.hsrc/Adaptation/MOESS/MOESS.hsrc/Adaptation/MOESS/MetricError.hsrc/Adaptation/MeshAdapter.cppsrc/Adaptation/MeshAdapter.hsrc/Adaptation/MOESS/MetricError.cppsrc/Adaptation/CMakeLists.txtsrc/Adaptation/MOESS/NLOPT/ImpliedMetric_Optimizer_NLOPT.cppsrc/Adaptation/MOESS/NLOPT/MOESS_Metric_Optimizer_NLOPT.hsrc/Adaptation/MOESS/NodalMetrics.hsrc/Adaptation/MOESS/MOESS.cppsrc/Meshing/avro/MesherInterface_avro.cppsrc/Meshing/avro/MesherInterface_avro.h34678adcbf32006b606f3b3055218bc50336e7d41533668472000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edumoess to minimize distance between implied metric and target field 2018-08-07 15:01:12 -040034678adcbf32006b606f3b3055218bc50336e7d4moess to minimize distance between implied metric and target fieldaddsrc/Adaptation/MOESS/NLOPT/MOESS_Metric_Optimizer_NLOPT.cppeditsrc/Meshing/avro/MesherInterface_avro.haddsrc/Adaptation/MOESS/MetricError.heditsrc/Adaptation/MeshAdapter.heditsrc/Adaptation/MOESS/MOESS.haddsrc/Adaptation/MOESS/NLOPT/MOESS_Metric_Optimizer_NLOPT.heditsrc/Adaptation/MeshAdapter.cppaddsrc/Adaptation/MOESS/MetricError.cppeditsrc/Adaptation/MOESS/NLOPT/ImpliedMetric_Optimizer_NLOPT.cppeditsrc/Adaptation/CMakeLists.txteditsrc/Adaptation/MOESS/NodalMetrics.haddsrc/Meshing/Adaptive/AnalyticMetrics/MetricField.hedittest/sandbox/CMakeLists.txteditsrc/Meshing/Metric/MetricOps.heditsrc/Adaptation/MOESS/MOESS.cppeditsrc/Meshing/avro/MesherInterface_avro.cppsrc/Adaptation/MOESS/MOESS.cppsrc/Adaptation/MOESS/NLOPT/MOESS_Metric_Optimizer_NLOPT.cppsrc/Adaptation/MOESS/MetricError.cppsrc/Topology/ElementTopology.cppsrc/Topology/ElementTopology.h0788e73588979378bbfdf806c6eb33775308799b1533671725000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edumove to new branch 2018-08-07 15:55:25 -04000788e73588979378bbfdf806c6eb33775308799bmove to new brancheditsrc/Adaptation/MOESS/MetricError.cppeditsrc/Adaptation/MOESS/MOESS.cppeditsrc/Topology/ElementTopology.heditsrc/Topology/ElementTopology.cppeditsrc/Adaptation/MOESS/NLOPT/MOESS_Metric_Optimizer_NLOPT.cppsrc/Discretization/Galerkin/IntegrandBoundaryTrace_WakeMatch_Galerkin_IBL.hsrc/pde/IBL/BCIBL2D.hsrc/pde/IBL/BCIBL2D.cppsrc/Discretization/Galerkin/AlgebraicEquationSet_HubTrace_Galerkin.he2b1b0f6660b189fc7c0ede2e61d0624040fd7571533675495000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduminor cleanup 2018-08-07 16:58:15 -0400e2b1b0f6660b189fc7c0ede2e61d0624040fd757minor cleanupeditsrc/Discretization/Galerkin/AlgebraicEquationSet_HubTrace_Galerkin.heditsrc/pde/IBL/BCIBL2D.cppeditsrc/pde/IBL/BCIBL2D.heditsrc/Discretization/Galerkin/IntegrandBoundaryTrace_WakeMatch_Galerkin_IBL.hsrc/Topology/ElementTopology.hsrc/Meshing/gmsh/GMSHtoSANS.cpp5cdbb946c0820e1ca6549c6d9d70a4c8daafb07a1533687690000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edua few (very simple) pentatope things 2018-08-07 20:21:30 -04005cdbb946c0820e1ca6549c6d9d70a4c8daafb07aa few (very simple) pentatope thingseditsrc/Topology/ElementTopology.heditsrc/Meshing/gmsh/GMSHtoSANS.cppsrc/Adaptation/MOESS/MOESS.cppsrc/Adaptation/MOESS/NLOPT/MOESS_Metric_Optimizer_NLOPT.cppsrc/Adaptation/MOESS/MetricError.cppsrc/Meshing/Metric/MetricOps.hsrc/Adaptation/MeshAdapter.cppb72648d6cf7ea6879ed52de4fa5c38fc01430b6a1533687718000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edumetric optimisation to match target metric 2018-08-07 20:21:58 -0400b72648d6cf7ea6879ed52de4fa5c38fc01430b6ametric optimisation to match target metriceditsrc/Adaptation/MOESS/MetricError.cppeditsrc/Adaptation/MOESS/NLOPT/MOESS_Metric_Optimizer_NLOPT.cppeditsrc/Meshing/Metric/MetricOps.heditsrc/Adaptation/MeshAdapter.cppeditsrc/Adaptation/MOESS/MOESS.cppsrc/Meshing/Metric/MetricOps.h89877ea5a417631b084fdf4214148d219f5ac6091533687751000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edudelete bad stuff 2018-08-07 20:22:31 -040089877ea5a417631b084fdf4214148d219f5ac609delete bad stuffeditsrc/Meshing/Metric/MetricOps.htest/sandbox/Solve2D_DGAdvective_Triangle_Euler_SmoothBump_toy.cpptest/sandbox/Adapt2D_DGBR2_RANSSA_Joukowski_UROP_toy.cpptest/sandbox/duct_meshing_UROP_toy.cpptest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_X1.h89295a9a06a3044dbf2f7a419a8b69ee1f6f23cf1533694178000https://acdl.mit.edu/csi/user/jzavalajzavalajzavala@mit.eduFixed more formatting errors. 2018-08-07 22:09:38 -040089295a9a06a3044dbf2f7a419a8b69ee1f6f23cfFixed more formatting errors.edittest/sandbox/Solve2D_DGAdvective_Triangle_Euler_SmoothBump_toy.cppedittest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_X1.hedittest/sandbox/Adapt2D_DGBR2_RANSSA_Joukowski_UROP_toy.cppedittest/sandbox/duct_meshing_UROP_toy.cpptest/sandbox/duct_meshing_UROP_toy.cpptest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_Xq.cpptest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_X1.cpptest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_X1.htest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_Xq.hda6de1355b62744a707d18ab2fcfd65bddc3dc1a1533710445000https://acdl.mit.edu/csi/user/jzavalajzavalajzavala@mit.eduRenamed duct mesh generator header and source files and edited corresponding includes. 2018-08-08 02:40:45 -0400da6de1355b62744a707d18ab2fcfd65bddc3dc1aRenamed duct mesh generator header and source files and edited corresponding includes.edittest/sandbox/duct_meshing_UROP_toy.cppdeletetest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_X1.cppaddtest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_Xq.hdeletetest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_X1.haddtest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_Xq.cppsrc/Adaptation/MOESS/MOESS.cppsrc/Meshing/avro/MesherInterface_avro.cppsrc/Adaptation/MOESS/NLOPT/MOESS_Metric_Optimizer_NLOPT.cppsrc/Adaptation/MOESS/MetricError.cppsrc/Adaptation/MeshAdapter.cpp0ddc3b3cc58bbefbaef176129e0239cd19ee07ab1533725475000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edutesting with metric optimizer, will definitely fail jenkins 2018-08-08 06:51:15 -04000ddc3b3cc58bbefbaef176129e0239cd19ee07abtesting with metric optimizer, will definitely fail jenkinseditsrc/Adaptation/MOESS/MOESS.cppeditsrc/Meshing/avro/MesherInterface_avro.cppeditsrc/Adaptation/MOESS/NLOPT/MOESS_Metric_Optimizer_NLOPT.cppeditsrc/Adaptation/MeshAdapter.cppeditsrc/Adaptation/MOESS/MetricError.cpptest/sandbox/CMakeLists.txtdf34dfed8ed51100d7ad20c8db74f89c6b1e1c761533725600000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduforgot to remove cmake add_subdir for my sandbox, will gitignore 2018-08-08 06:53:20 -0400df34dfed8ed51100d7ad20c8db74f89c6b1e1c76forgot to remove cmake add_subdir for my sandbox, will gitignoreedittest/sandbox/CMakeLists.txtsrc/Adaptation/MOESS/SolverInterface_MetricError.hsrc/Adaptation/MOESS/NLOPT/MOESS_Metric_Optimizer_NLOPT.cpp21c498109a14a89a4503ba271f851da435aef90c1533728460000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduvera fixes, missing file 2018-08-08 07:41:00 -040021c498109a14a89a4503ba271f851da435aef90cvera fixes, missing fileaddsrc/Adaptation/MOESS/SolverInterface_MetricError.heditsrc/Adaptation/MOESS/NLOPT/MOESS_Metric_Optimizer_NLOPT.cppsrc/Adaptation/MOESS/MOESS.cppsrc/Adaptation/MOESS/MetricError.hb867098212ee1e46135d6b7e5db071dc82163b411533729603000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edutry to fix invalid initializations 2018-08-08 08:00:03 -0400b867098212ee1e46135d6b7e5db071dc82163b41try to fix invalid initializationseditsrc/Adaptation/MOESS/MOESS.cppeditsrc/Adaptation/MOESS/MetricError.hsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.hsrc/pde/IBL/PDEIBL2D_impl.htest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Line_IBL_airfoilOnly_btest.cpptest/system/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_NACA0004_LamiBL_btest.cppsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective.hsrc/Discretization/HDG/AlgebraicEquationSet_Hubtrace_HDGAdvective.htest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_LamiBL_TurbWake_btest.cpp93c4abd9f5aae0228ad760d72eb5e830f7f8eafa1533737355000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduCleanup. Working on HDGAdvective hubtrace 2018-08-08 10:09:15 -040093c4abd9f5aae0228ad760d72eb5e830f7f8eafaCleanup. Working on HDGAdvective hubtraceeditsrc/pde/IBL/PDEIBL2D_impl.haddtest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_LamiBL_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_NACA0004_LamiBL_btest.cppedittest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Line_IBL_airfoilOnly_btest.cppeditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.heditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective.haddsrc/Discretization/HDG/AlgebraicEquationSet_Hubtrace_HDGAdvective.htest/unit/UnitGrids/CMakeLists.txt99aac0c2434e0d134893feaf33f64da7ec935e9f1533741331000https://acdl.mit.edu/csi/user/jzavalajzavalajzavala@mit.eduRenamed the duct mesher file mentioned inside CMakeLists.txt 2018-08-08 11:15:31 -040099aac0c2434e0d134893feaf33f64da7ec935e9fRenamed the duct mesher file mentioned inside CMakeLists.txtedittest/unit/UnitGrids/CMakeLists.txtsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective.hsrc/Discretization/HDG/AlgebraicEquationSet_Hubtrace_HDGAdvective.hsrc/Discretization/HDG/IntegrandBoundaryTrace_HubTrace_HDGAdvective.hsrc/Discretization/HDG/IntegrandBoundaryTrace_None_HDGAdvective.hsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.htest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_LamiBL_TurbWake_btest.cpp5efb5f67b256e96e03efd8aac7fc57b88689586c1533751701000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduGet coupled IBL to compile with HDGAdvective 2018-08-08 14:08:21 -04005efb5f67b256e96e03efd8aac7fc57b88689586cGet coupled IBL to compile with HDGAdvectiveeditsrc/Discretization/HDG/IntegrandBoundaryTrace_None_HDGAdvective.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_LamiBL_TurbWake_btest.cppeditsrc/Discretization/HDG/AlgebraicEquationSet_Hubtrace_HDGAdvective.heditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.haddsrc/Discretization/HDG/IntegrandBoundaryTrace_HubTrace_HDGAdvective.heditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective.htest/sandbox/Adapt2D_DGBR2_NavierStokes_FlatPlate_toy.cppa4b4035e957f0083756b88a62831528a9ab9a5941533753180000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduremoved the rfld dumping as it doesn't work in parallel 2018-08-08 14:33:00 -0400a4b4035e957f0083756b88a62831528a9ab9a594removed the rfld dumping as it doesn't work in paralleledittest/sandbox/Adapt2D_DGBR2_NavierStokes_FlatPlate_toy.cppsrc/pde/AnalyticFunction/ScalarFunction1D.htest/sandbox/Adapt1D_DGBR2_L2Project_toy.cpp2c6ac16b3fe0f0c6269a170457ffee500766c3601533753214000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educhanged monomial to accept reals, added a 1D L2Projection toy 2018-08-08 14:33:34 -04002c6ac16b3fe0f0c6269a170457ffee500766c360changed monomial to accept reals, added a 1D L2Projection toyeditsrc/pde/AnalyticFunction/ScalarFunction1D.haddtest/sandbox/Adapt1D_DGBR2_L2Project_toy.cppsrc/pde/AnalyticFunction/ScalarFunction1D.htest/sandbox/Adapt1D_DGBR2_L2Project_toy.cpptest/sandbox/Adapt2D_DGBR2_NavierStokes_FlatPlate_toy.cpp0d499d6ab77f4c2c8dbde579b51272b16ad4af0b1533753536000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educhanged monomial to accept reals, added a 1D L2Projection toy 2018-08-08 14:38:56 -04000d499d6ab77f4c2c8dbde579b51272b16ad4af0bchanged monomial to accept reals, added a 1D L2Projection toyeditsrc/pde/AnalyticFunction/ScalarFunction1D.hedittest/sandbox/Adapt2D_DGBR2_NavierStokes_FlatPlate_toy.cppaddtest/sandbox/Adapt1D_DGBR2_L2Project_toy.cpptest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Advection_btest.cpptest/system/Asymptotic/ErrorOrder_1D_HDGAdvective_Advection_btest.cppsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.hc4c5d9a7c8f597ff01f09d31ce7ac0d4377df6441533756008000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduUpdated constructor signature 2018-08-08 15:20:08 -0400c4c5d9a7c8f597ff01f09d31ce7ac0d4377df644Updated constructor signatureedittest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Advection_btest.cppedittest/system/Asymptotic/ErrorOrder_1D_HDGAdvective_Advection_btest.cppeditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.htest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HDGAdvIBL_Panel_btest.cppe4b8047303c83f646dcb7e3b40eda241b46430281533757245000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded ping test for coupled HDGAdv IBL system. [TBD]: JacobianParam and hubtrace stuff 2018-08-08 15:40:45 -0400e4b8047303c83f646dcb7e3b40eda241b4643028Added ping test for coupled HDGAdv IBL system. [TBD]: JacobianParam and hubtrace stuffaddtest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HDGAdvIBL_Panel_btest.cpptest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_FlatPlate_toy.cpptest/sandbox/Adapt2D_DGBR2_NavierStokes_FlatPlate_toy.cpptest/sandbox/Adapt2D_DGBR2_NavierStokes_NACADuct_toy.cpptest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_OjedaMMS_toy.cpptest/sandbox/Solve2D_HDG_Triangle_NavierStokes_FlatPlate_toy.cpptest/sandbox/Adapt2D_HDG_NavierStokes_FlatPlate_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cpp402eaf0ff467fa034a6019cfcb2ed817d50e2c651533759042000https://acdl.mit.edu/csi/user/arthuangarthuangarthuang@mit.edusandbox edits 2018-08-08 16:10:42 -0400402eaf0ff467fa034a6019cfcb2ed817d50e2c65sandbox editsedittest/sandbox/Adapt2D_HDG_NavierStokes_FlatPlate_toy.cppedittest/sandbox/Solve2D_HDG_Triangle_NavierStokes_FlatPlate_toy.cppedittest/sandbox/Adapt2D_DGBR2_NavierStokes_NACADuct_toy.cppedittest/sandbox/Adapt2D_DGBR2_NavierStokes_FlatPlate_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cppedittest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_FlatPlate_toy.cppedittest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_OjedaMMS_toy.cpptest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_OjedaMMS_toy.cppef4ef161f771cc3fa2b0cc6afa0feae765240eb81533759346000https://acdl.mit.edu/csi/user/arthuangarthuangarthuang@mit.edurevert sandbox not working 2018-08-08 16:15:46 -0400ef4ef161f771cc3fa2b0cc6afa0feae765240eb8revert sandbox not workingedittest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_OjedaMMS_toy.cpptest/sandbox/Solve2D_DGAdvective_Triangle_Euler_SmoothBump_toy.cppee26a6f57cfb3ac0a7b7975afa21a70a7e0deb971533763937000https://acdl.mit.edu/csi/user/jzavalajzavalajzavala@mit.eduAdded Pseudo Time solving to DGAdvective Smoothbump toy. 2018-08-08 17:32:17 -0400ee26a6f57cfb3ac0a7b7975afa21a70a7e0deb97Added Pseudo Time solving to DGAdvective Smoothbump toy.edittest/sandbox/Solve2D_DGAdvective_Triangle_Euler_SmoothBump_toy.cpptest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_Xq.htest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_Xq.cpp47f3c433ad2b8b79cabd1527aabbba81db31b0511533764164000https://acdl.mit.edu/csi/user/jzavalajzavalajzavala@mit.eduCleaned up duct mesh generator files. 2018-08-08 17:36:04 -040047f3c433ad2b8b79cabd1527aabbba81db31b051Cleaned up duct mesh generator files.edittest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_Xq.hedittest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_Xq.cpptest/unit/UnitGrids/CMakeLists.txttest/unit/UnitGrids/XField2D_Arc_Triangle_Lagrange_Xq.htest/unit/UnitGrids/XField2D_Arc_Triangle_Lagrange_Xq.cpptest/sandbox/arc_meshing_UROP_toy.cpp22426d53655cb5fc4d836c5f3c44cdcb97d3116b1533764291000https://acdl.mit.edu/csi/user/jzavalajzavalajzavala@mit.eduAdded arc mesh generator and corresponding toy test file. Updated CMakeLists accordingly. 2018-08-08 17:38:11 -040022426d53655cb5fc4d836c5f3c44cdcb97d3116bAdded arc mesh generator and corresponding toy test file. Updated CMakeLists accordingly.addtest/sandbox/arc_meshing_UROP_toy.cppedittest/unit/UnitGrids/CMakeLists.txtaddtest/unit/UnitGrids/XField2D_Arc_Triangle_Lagrange_Xq.haddtest/unit/UnitGrids/XField2D_Arc_Triangle_Lagrange_Xq.cppsrc/UserInterfaces/LIPSolver.hsrc/UserInterfaces/capsAIM/sansLIPAIM.cppCMakeInclude/Checks/petsc_ksp_ex1_test.cxxsrc/UserInterfaces/LIPSolver.cppd7a54d03e45bbeb84a30ba8ae5dd609aeef277801533776011000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduVarious fixes for LIP AIM 2018-08-08 20:53:31 -0400d7a54d03e45bbeb84a30ba8ae5dd609aeef27780Various fixes for LIP AIMeditsrc/UserInterfaces/capsAIM/sansLIPAIM.cppeditsrc/UserInterfaces/LIPSolver.heditCMakeInclude/Checks/petsc_ksp_ex1_test.cxxeditsrc/UserInterfaces/LIPSolver.cpptest/unit/CMakeLists.txtaa9c544f1d0bba1a00e483651dd1683a731f6ac01533810529000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduRelaxed unit test timing a bit more 2018-08-09 06:28:49 -0400aa9c544f1d0bba1a00e483651dd1683a731f6ac0Relaxed unit test timing a bit moreedittest/unit/CMakeLists.txttest/unit/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized_AD_btest.cpp73576e7812a4fdb74e53340038537c05ea24f9961533825630000https://acdl.mit.edu/csi/user/arthuangarthuangarthuang@mit.edurelax tol 2018-08-09 10:40:30 -040073576e7812a4fdb74e53340038537c05ea24f996relax toledittest/unit/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized_AD_btest.cpptest/unit/UnitGrids/XField2D_Arc_Triangle_Lagrange_Xq.cpptest/unit/UnitGrids/XField2D_Arc_Triangle_Lagrange_Xq.htest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_Xq.cpptest/sandbox/arc_meshing_UROP_toy.cpptest/unit/UnitGrids/CMakeLists.txttest/sandbox/Solve2D_DGAdvective_Triangle_Euler_SmoothBump_toy.cpptest/unit/UnitGrids/XField2D_Annulus_Triangle_Lagrange_Xq.cpptest/sandbox/annulus_meshing_UROP_toy.cpptest/unit/UnitGrids/XField2D_Annulus_Triangle_Lagrange_Xq.hdf696412d1bfd2ccfca5783af3564da8584f842a1533836427000https://acdl.mit.edu/csi/user/jzavalajzavalajzavala@mit.eduRenamed arc mesh generator files to annulus. Minor changes elsewhere. 2018-08-09 13:40:27 -0400df696412d1bfd2ccfca5783af3564da8584f842aRenamed arc mesh generator files to annulus. Minor changes elsewhere.edittest/unit/UnitGrids/CMakeLists.txtdeletetest/sandbox/arc_meshing_UROP_toy.cppaddtest/unit/UnitGrids/XField2D_Annulus_Triangle_Lagrange_Xq.haddtest/sandbox/annulus_meshing_UROP_toy.cppedittest/sandbox/Solve2D_DGAdvective_Triangle_Euler_SmoothBump_toy.cppaddtest/unit/UnitGrids/XField2D_Annulus_Triangle_Lagrange_Xq.cppdeletetest/unit/UnitGrids/XField2D_Arc_Triangle_Lagrange_Xq.cppdeletetest/unit/UnitGrids/XField2D_Arc_Triangle_Lagrange_Xq.hedittest/unit/UnitGrids/XField2D_Duct_Triangle_Lagrange_Xq.cppsrc/Discretization/IntegrateBoundaryTrace_Dispatch.htest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HDGAdvIBL_Panel_btest.cppsrc/Discretization/HDG/IntegrandBoundaryTrace_None_HDGAdvective.hsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.hsrc/Discretization/Galerkin/JacobianInteriorTrace_Galerkin_Param.hsrc/Discretization/HDG/JacobianInteriorTrace_HDGAdvective_Param.hsrc/Discretization/HDG/ResidualInteriorTrace_HDGAdvective.hsrc/Discretization/HDG/ResidualBoundaryTrace_Dispatch_HDGAdvective.hsrc/Discretization/HDG/AlgebraicEquationSet_Hubtrace_HDGAdvective.hsrc/Discretization/HDG/IntegrandBoundaryTrace_HubTrace_HDGAdvective.hsrc/Discretization/HDG/JacobianInteriorTrace_HDGAdvective.hsrc/Discretization/HDG/ResidualBoundaryTrace_HDGAdvective.hf84637eedb75a6ac1f28e0cb55306d6acb8759bf1533841849000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduHDGAdv progress: (1) jacobian w.r.t. parameter field now working for interior traces; (2) hubtrace jacobian and residual now working 2018-08-09 15:10:49 -0400f84637eedb75a6ac1f28e0cb55306d6acb8759bfHDGAdv progress: (1) jacobian w.r.t. parameter field now working for interior traces; (2) hubtrace jacobian and residual now workingeditsrc/Discretization/HDG/AlgebraicEquationSet_Hubtrace_HDGAdvective.heditsrc/Discretization/HDG/IntegrandBoundaryTrace_None_HDGAdvective.heditsrc/Discretization/HDG/ResidualInteriorTrace_HDGAdvective.heditsrc/Discretization/Galerkin/JacobianInteriorTrace_Galerkin_Param.haddsrc/Discretization/HDG/JacobianInteriorTrace_HDGAdvective_Param.heditsrc/Discretization/HDG/IntegrandBoundaryTrace_HubTrace_HDGAdvective.heditsrc/Discretization/IntegrateBoundaryTrace_Dispatch.hedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HDGAdvIBL_Panel_btest.cppeditsrc/Discretization/HDG/ResidualBoundaryTrace_Dispatch_HDGAdvective.heditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.heditsrc/Discretization/HDG/JacobianInteriorTrace_HDGAdvective.heditsrc/Discretization/HDG/ResidualBoundaryTrace_HDGAdvective.htest/unit/UnitGrids/XField2D_Annulus_Triangle_Lagrange_Xq.cppda23f71294ef702eaf79d0212b04c85e21edb87a1533843740000https://acdl.mit.edu/csi/user/jzavalajzavalajzavala@mit.eduMinor change. 2018-08-09 15:42:20 -0400da23f71294ef702eaf79d0212b04c85e21edb87aMinor change.edittest/unit/UnitGrids/XField2D_Annulus_Triangle_Lagrange_Xq.cppsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.hsrc/Discretization/HDG/JacobianBoundaryTrace_HDGAdvective_Param.hsrc/Discretization/HDG/JacobianBoundaryTrace_Dispatch_HDGAdvective_Param.hsrc/Discretization/HDG/JacobianInteriorTrace_HDGAdvective_Param.hsrc/Discretization/HDG/JacobianBoundaryTrace_FieldTrace_HDGAdvective_Param.hsrc/Discretization/HDG/JacobianBoundaryTrace_Dispatch_HDGAdvective.hsrc/Discretization/HDG/JacobianBoundaryTrace_FieldTrace_HDGAdvective.hdc9354f7f2a7cf5a47426405a948265d759c3bb01533847381000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduCompleted HDGAdv jacobian w.r.t. parameter fields at boundary traces 2018-08-09 16:43:01 -0400dc9354f7f2a7cf5a47426405a948265d759c3bb0Completed HDGAdv jacobian w.r.t. parameter fields at boundary traceseditsrc/Discretization/HDG/JacobianBoundaryTrace_FieldTrace_HDGAdvective.haddsrc/Discretization/HDG/JacobianBoundaryTrace_Dispatch_HDGAdvective_Param.haddsrc/Discretization/HDG/JacobianBoundaryTrace_HDGAdvective_Param.heditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.haddsrc/Discretization/HDG/JacobianBoundaryTrace_FieldTrace_HDGAdvective_Param.heditsrc/Discretization/HDG/JacobianBoundaryTrace_Dispatch_HDGAdvective.heditsrc/Discretization/HDG/JacobianInteriorTrace_HDGAdvective_Param.hsrc/Discretization/Galerkin/JacobianBoundaryTrace_FieldTrace_Galerkin_Param.hsrc/Discretization/HDG/AlgebraicEquationSet_Hubtrace_HDGAdvective.hf9c2de8a8047320e91eab8b3af7e0dcc4250fe831533848387000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduTurned on HDGAdv jacobian w.r.t. paramter field at HubTrace, and it just worked 2018-08-09 16:59:47 -0400f9c2de8a8047320e91eab8b3af7e0dcc4250fe83Turned on HDGAdv jacobian w.r.t. paramter field at HubTrace, and it just workededitsrc/Discretization/Galerkin/JacobianBoundaryTrace_FieldTrace_Galerkin_Param.heditsrc/Discretization/HDG/AlgebraicEquationSet_Hubtrace_HDGAdvective.htest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HDGAdvIBL_Panel_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_IBL_Panel_btest.cpp944ebec5cf55eaf4331b3638bf138a25982e0a611533849848000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduPing test fixed, but the resulting jacobian is too ill-conditioned such that linear solver fails. Original DG stuff also suffers the same problem. Probably broke sth in some previous commits --> To be fixed 2018-08-09 17:24:08 -0400944ebec5cf55eaf4331b3638bf138a25982e0a61Ping test fixed, but the resulting jacobian is too ill-conditioned such that linear solver fails. Original DG stuff also suffers the same problem. Probably broke sth in some previous commits --> To be fixededittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_IBL_Panel_btest.cppedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HDGAdvIBL_Panel_btest.cpptest/sandbox/Solve2D_DGAdvective_Triangle_Euler_SmoothBump_toy.cpptest/unit/UnitGrids/XField2D_Annulus_Triangle_Lagrange_Xq.cppa8597816454216902a56c8b40b97706aa62642e71533870995000https://acdl.mit.edu/csi/user/jzavalajzavalajzavala@mit.eduMinor fixes. 2018-08-09 23:16:35 -0400a8597816454216902a56c8b40b97706aa62642e7Minor fixes.edittest/sandbox/Solve2D_DGAdvective_Triangle_Euler_SmoothBump_toy.cppedittest/unit/UnitGrids/XField2D_Annulus_Triangle_Lagrange_Xq.cpptest/sandbox/Adapt1D_DGBR2_L2Project_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cpp518b84995060b7814a5f86be80c6aac3ea5d707a1533901072000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edubranch change 2018-08-10 07:37:52 -0400518b84995060b7814a5f86be80c6aac3ea5d707abranch changeedittest/sandbox/Adapt1D_DGBR2_L2Project_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cppsrc/Meshing/EGADS/EGModel.cppsrc/Meshing/EGADS/EGBody.cppsrc/Meshing/EGADS/EGBody.hsrc/Meshing/EGADS/EGTopologyBase.hsrc/UserInterfaces/capsAIM/intersectWake.cppsrc/Meshing/EGADS/EGIntersection.hsrc/Meshing/EGADS/EGTopologyBase.cppsrc/UserInterfaces/capsAIM/sansLIPAIM.cpp18318cc3df6516d8fcc9227cbc7bc429bd0d9ed31534096449000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduRemoved non-determinstic wake intersection 2018-08-12 13:54:09 -040018318cc3df6516d8fcc9227cbc7bc429bd0d9ed3Removed non-determinstic wake intersectioneditsrc/Meshing/EGADS/EGTopologyBase.cppeditsrc/Meshing/EGADS/EGTopologyBase.heditsrc/UserInterfaces/capsAIM/sansLIPAIM.cppeditsrc/Meshing/EGADS/EGBody.cppeditsrc/Meshing/EGADS/EGIntersection.heditsrc/Meshing/EGADS/EGModel.cppeditsrc/UserInterfaces/capsAIM/intersectWake.cppeditsrc/Meshing/EGADS/EGBody.hsrc/Meshing/EGADS/EGBody.hsrc/Meshing/EGADS/EGBody.cpptest/unit/Meshing/EGADS/EGTessModel_btest.cppea52daa8b99551550bb73e241a9b9969c844d3a11534111370000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed compile errors 2018-08-12 18:02:50 -0400ea52daa8b99551550bb73e241a9b9969c844d3a1Fixed compile errorseditsrc/Meshing/EGADS/EGBody.cppedittest/unit/Meshing/EGADS/EGTessModel_btest.cppeditsrc/Meshing/EGADS/EGBody.htest/unit/Discretization/DG/AlgebraicEquationSet_DGAdvective_BuckleyLeverett_ST_btest.cpptest/unit/pde/FullPotential/LinearizedIncompressiblePotential3D_Trefftz_btest.cpptest/unit/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_BuckleyLeverett_ST_btest.cppCMakeInclude/Builds/BuildPETSC.cmaketest/unit/Discretization/DG/AlgebraicEquationSet_DGBR2_BuckleyLeverett_ST_btest.cpptest/unit/Discretization/HDG/AlgebraicEquationSet_HDG_BuckleyLeverett_ST_btest.cppe61bad2708ac75069f5b661cb5ccdf073a2cf11d1534112400000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAnother compile problem 2018-08-12 18:20:00 -0400e61bad2708ac75069f5b661cb5ccdf073a2cf11dAnother compile problemedittest/unit/pde/FullPotential/LinearizedIncompressiblePotential3D_Trefftz_btest.cppeditCMakeInclude/Builds/BuildPETSC.cmakeedittest/unit/Discretization/DG/AlgebraicEquationSet_DGBR2_BuckleyLeverett_ST_btest.cppedittest/unit/Discretization/HDG/AlgebraicEquationSet_HDG_BuckleyLeverett_ST_btest.cppedittest/unit/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_BuckleyLeverett_ST_btest.cppedittest/unit/Discretization/DG/AlgebraicEquationSet_DGAdvective_BuckleyLeverett_ST_btest.cpptest/unit/Discretization/DG/AlgebraicEquationSet_DGAdvective_BuckleyLeverett_ST_btest.cpptest/unit/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_BuckleyLeverett_ST_btest.cpptest/unit/Discretization/DG/AlgebraicEquationSet_DGBR2_BuckleyLeverett_ST_btest.cpptest/unit/Discretization/HDG/AlgebraicEquationSet_HDG_BuckleyLeverett_ST_btest.cppc9f16df1ce847aa2c7e0c43fcfa66ccf0d82d43d1534113265000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUndo 2018-08-12 18:34:25 -0400c9f16df1ce847aa2c7e0c43fcfa66ccf0d82d43dUndoedittest/unit/Discretization/HDG/AlgebraicEquationSet_HDG_BuckleyLeverett_ST_btest.cppedittest/unit/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_BuckleyLeverett_ST_btest.cppedittest/unit/Discretization/DG/AlgebraicEquationSet_DGBR2_BuckleyLeverett_ST_btest.cppedittest/unit/Discretization/DG/AlgebraicEquationSet_DGAdvective_BuckleyLeverett_ST_btest.cppsrc/Field/FieldLine_DG_Cell_impl.hsrc/Field/FieldVolume_DG_Cell_impl.hsrc/Field/Partition/XField_Lagrange.cppsrc/Field/Field_DG_CellBase.hsrc/Field/Field_DG_CellBase_impl.hsrc/Field/Partition/XField_Lagrange.htest/unit/Field/XField_Lagrange_Partition_btest.cppsrc/LinearAlgebra/GlobalContinuousMap.hsrc/Field/Partition/XField_Lagrange_balance_impl.hsrc/Field/FieldBase.hsrc/Field/FieldArea_DG_Cell_impl.htest/unit/Field/Field2D_DG_Triangle_btest.cpp697f39d1333ec3df53c16cb0264c672f7df4e9a51534124209000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduLots of work towards Zombies 2018-08-12 21:36:49 -0400697f39d1333ec3df53c16cb0264c672f7df4e9a5Lots of work towards Zombieseditsrc/Field/FieldArea_DG_Cell_impl.hedittest/unit/Field/Field2D_DG_Triangle_btest.cppeditsrc/Field/FieldVolume_DG_Cell_impl.heditsrc/Field/Field_DG_CellBase_impl.heditsrc/LinearAlgebra/GlobalContinuousMap.heditsrc/Field/Partition/XField_Lagrange.cppeditsrc/Field/Partition/XField_Lagrange.hedittest/unit/Field/XField_Lagrange_Partition_btest.cppeditsrc/Field/FieldBase.heditsrc/Field/FieldLine_DG_Cell_impl.heditsrc/Field/Field_DG_CellBase.heditsrc/Field/Partition/XField_Lagrange_balance_impl.hsrc/UserInterfaces/capsAIM/intersectWake.cppsrc/Meshing/EGADS/replaceFaces.hc3a2f2cadf1b06cd29667dcd15bfbe2c3e0a2ac51534125167000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduForgot a file 2018-08-12 21:52:47 -0400c3a2f2cadf1b06cd29667dcd15bfbe2c3e0a2ac5Forgot a fileeditsrc/UserInterfaces/capsAIM/intersectWake.cppaddsrc/Meshing/EGADS/replaceFaces.hsrc/Field/Field_DG_CellBase.h52b690fb0da3b01a0e818af98def3fedc6aedb781534125731000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed compile error 2018-08-12 22:02:11 -040052b690fb0da3b01a0e818af98def3fedc6aedb78Fixed compile erroreditsrc/Field/Field_DG_CellBase.hscripts/jenkins/cmake_jenkins.shsrc/UserInterfaces/capsAIM/sansLIPAIM.cppd381809db54f04c585ab63253a2cd10b9ed9f1e81534128423000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded sansLIPAIM to jenkins compile 2018-08-12 22:47:03 -0400d381809db54f04c585ab63253a2cd10b9ed9f1e8Added sansLIPAIM to jenkins compileeditscripts/jenkins/cmake_jenkins.sheditsrc/UserInterfaces/capsAIM/sansLIPAIM.cppsrc/Field/Field_DG_CellBase_impl.h8573ed4aed8bb05cf09dbc7d83eade0013083e411534163706000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduHopefully fixed local2native DG indexing 2018-08-13 08:35:06 -04008573ed4aed8bb05cf09dbc7d83eade0013083e41Hopefully fixed local2native DG indexingeditsrc/Field/Field_DG_CellBase_impl.htest/system/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_NACA0004_LamiBL_btest.cpptest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Line_IBL_airfoilOnly_btest.cppac5896099a7a21af13f13803f3044ce46eb39f111534169241000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduUpdated and verified existing test cases 2018-08-13 10:07:21 -0400ac5896099a7a21af13f13803f3044ce46eb39f11Updated and verified existing test casesedittest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Line_IBL_airfoilOnly_btest.cppedittest/system/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_NACA0004_LamiBL_btest.cppsrc/pde/IBL/PDEIBL2D_impl.htest/unit/Discretization/HDG/AlgebraicEquationSet_Hubtrace_HDGAdvective_IBL_btest.cpp0859e18ddec144d52c9dcd8f2d5eab2fe0636d681534181063000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded ping test for HDGAdvective HubTrace AES of uncoupled IBL 2018-08-13 13:24:23 -04000859e18ddec144d52c9dcd8f2d5eab2fe0636d68Added ping test for HDGAdvective HubTrace AES of uncoupled IBLeditsrc/pde/IBL/PDEIBL2D_impl.haddtest/unit/Discretization/HDG/AlgebraicEquationSet_Hubtrace_HDGAdvective_IBL_btest.cpptest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Line_IBL_airfoilOnly_btest.cpptest/unit/Discretization/HDG/AlgebraicEquationSet_Hubtrace_HDGAdvective_IBL_btest.cpptest/unit/Discretization/DG/AlgebraicEquationSet_DGAdvective_Line_IBL_airfoilOnly_btest.cpp0b6f9df70d136e89e22c2b5cab5cae550c2445591534182246000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded ping test 2018-08-13 13:44:06 -04000b6f9df70d136e89e22c2b5cab5cae550c244559Added ping testedittest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Line_IBL_airfoilOnly_btest.cppedittest/unit/Discretization/HDG/AlgebraicEquationSet_Hubtrace_HDGAdvective_IBL_btest.cppaddtest/unit/Discretization/DG/AlgebraicEquationSet_DGAdvective_Line_IBL_airfoilOnly_btest.cppsrc/Discretization/Galerkin/AlgebraicEquationSet_HubTrace_Galerkin_cutCellTransitionIBL.hsrc/Discretization/HDG/AlgebraicEquationSet_Hubtrace_HDGAdvective.hsrc/Discretization/Galerkin/AlgebraicEquationSet_HubTrace_Galerkin.ha03b5415432a458143f7f442425d6911602c1d151534182795000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduminor refactoring 2018-08-13 13:53:15 -0400a03b5415432a458143f7f442425d6911602c1d15minor refactoringeditsrc/Discretization/Galerkin/AlgebraicEquationSet_HubTrace_Galerkin.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_HubTrace_Galerkin_cutCellTransitionIBL.heditsrc/Discretization/HDG/AlgebraicEquationSet_Hubtrace_HDGAdvective.hsrc/Discretization/Galerkin/AlgebraicEquationSet_HubTrace_Galerkin_cutCellTransitionIBL.htest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBL_Panel_btest.cpp2953971b86ac5a7cacf6a366208937d7d942aa791534186068000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduminor refactoring 2018-08-13 14:47:48 -04002953971b86ac5a7cacf6a366208937d7d942aa79minor refactoringeditsrc/Discretization/Galerkin/AlgebraicEquationSet_HubTrace_Galerkin_cutCellTransitionIBL.hedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBL_Panel_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HDGAdvIBL_Panel_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_IBL_Panel_btest.cpp67905fab587df70335b0dee53ea462774a05f6211534187094000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduIntermediate commit: debugging coupled IBL 2018-08-13 15:04:54 -040067905fab587df70335b0dee53ea462774a05f621Intermediate commit: debugging coupled IBLedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HDGAdvIBL_Panel_btest.cppedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_IBL_Panel_btest.cpptest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_HDGAdv_IBL_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test.txttest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_LamiBL_TurbWake_btest.cpp8be658fa271b3bdab14f69070cd26af4ad65d36d1534193629000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduCoupled IBL with HDGAdv looks good qualitatively, compared to DG results from acdl/develop branch version. Ping test produces ill-conditioned jacoabian, which should be expected given the ill-conditioned amp equation (aka without proper initial condition at stagnation point) 2018-08-13 16:53:49 -04008be658fa271b3bdab14f69070cd26af4ad65d36dCoupled IBL with HDGAdv looks good qualitatively, compared to DG results from acdl/develop branch version. Ping test produces ill-conditioned jacoabian, which should be expected given the ill-conditioned amp equation (aka without proper initial condition at stagnation point)edittest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_LamiBL_TurbWake_btest.cppaddtest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_HDGAdv_IBL_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test.txtsrc/Field/Field_DG_CellBase.hsrc/Field/Field_DG_CellBase_impl.hsrc/Field/CountGhostNeighbors.hsrc/Field/output_Tecplot.cppsrc/LinearAlgebra/GlobalContinuousMap.hsrc/Field/FieldBase.htest/unit/Field/Field2D_DG_Triangle_btest.cpp66f7dbef3fa5eaea26ae3c8a6b2c1029d4615f9b1534204666000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix for zombie counting 2018-08-13 19:57:46 -040066f7dbef3fa5eaea26ae3c8a6b2c1029d4615f9bFix for zombie countingeditsrc/Field/FieldBase.heditsrc/Field/CountGhostNeighbors.heditsrc/Field/Field_DG_CellBase.heditsrc/Field/output_Tecplot.cppeditsrc/Field/Field_DG_CellBase_impl.heditsrc/LinearAlgebra/GlobalContinuousMap.hedittest/unit/Field/Field2D_DG_Triangle_btest.cppsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_CutcellTransitionIBL.htest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HubtraceHDGAdvIBL_CutCellForcedTransition_Panel_btest.cppsrc/Discretization/HDG/AlgebraicEquationSet_Hubtrace_HDGAdvective.hsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.hsrc/Discretization/HDG/AlgebraicEquationSet_Hubtrace_HDGAdvective_CutcellTransitionIBL.h81ddd9a3fe63df28d31a8e9f1eb9e192278813d71534211641000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduImplemented HDGAdv cut-cell transition, and added ping test for forced transition 2018-08-13 21:54:01 -040081ddd9a3fe63df28d31a8e9f1eb9e192278813d7Implemented HDGAdv cut-cell transition, and added ping test for forced transitioneditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.haddsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_CutcellTransitionIBL.heditsrc/Discretization/HDG/AlgebraicEquationSet_Hubtrace_HDGAdvective.haddsrc/Discretization/HDG/AlgebraicEquationSet_Hubtrace_HDGAdvective_CutcellTransitionIBL.haddtest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HubtraceHDGAdvIBL_CutCellForcedTransition_Panel_btest.cppsrc/pde/NS/BCEuler1D_mitState.htest/sandbox/Solve1D_DGBR2_Line_Euler_ShuOsher_AV_ST_toy.cppsrc/pde/NS/BCEulermitAVDiffusion1D.hf561c9f8934760dad91fd385a264b87a273710a11534218959000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduHigher-resolution ShuOsher case 2018-08-13 21:55:59 -0600f561c9f8934760dad91fd385a264b87a273710a1Higher-resolution ShuOsher caseeditsrc/pde/NS/BCEuler1D_mitState.heditsrc/pde/NS/BCEulermitAVDiffusion1D.hedittest/sandbox/Solve1D_DGBR2_Line_Euler_ShuOsher_AV_ST_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cpp11177852a9a6c3e4ff7756c48153d62937e94b491534253648000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduadded order and power runtime flags 2018-08-14 09:34:08 -040011177852a9a6c3e4ff7756c48153d62937e94b49added order and power runtime flagsedittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HubtraceHDGAdvIBL_CutCellNaturalTransition_Panel_btest.cpp1e0166385d45361aa4e37a50848adeddfeb34b8d1534255232000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded ping test for natural transition of HDGAdv cut-cell IBL 2018-08-14 10:00:32 -04001e0166385d45361aa4e37a50848adeddfeb34b8dAdded ping test for natural transition of HDGAdv cut-cell IBLaddtest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HubtraceHDGAdvIBL_CutCellNaturalTransition_Panel_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HubtraceHDGAdvIBL_CutCellNaturalTransition_Panel_btest.cppecc1a3907af14e365751ee90122f6bbafdcf76781534257340000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded HDGAdv cut-cell case with natural transition 2018-08-14 10:35:40 -0400ecc1a3907af14e365751ee90122f6bbafdcf7678Added HDGAdv cut-cell case with natural transitionaddtest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HubtraceHDGAdvIBL_CutCellNaturalTransition_Panel_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppsrc/Discretization/Galerkin/Stabilization_Galerkin.htest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cppc39399ee3ab0618a579a8287992a5d7b96dbafec1534259166000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edutweaks to case and considering a different stabilization 2018-08-14 11:06:06 -0400c39399ee3ab0618a579a8287992a5d7b96dbafectweaks to case and considering a different stabilizationeditsrc/Discretization/Galerkin/Stabilization_Galerkin.hedittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cppsrc/pde/IBL/PDEIBL2D_impl.h99b1da46f6cd45ef5e7f3541d1da0817f8f16bbf1534266251000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed a bug in HDG interface equation of ctau 2018-08-14 13:04:11 -040099b1da46f6cd45ef5e7f3541d1da0817f8f16bbfFixed a bug in HDG interface equation of ctaueditsrc/pde/IBL/PDEIBL2D_impl.hsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_CutcellTransitionIBL.hsrc/Discretization/isValidState/isValidStateInteriorTrace_HDG.hd443e4df41859ea9842a36bbad92fb34368321021534270456000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduEnabled checking of state validity of interior trace DOFs of HDGAdv 2018-08-14 14:14:16 -0400d443e4df41859ea9842a36bbad92fb3436832102Enabled checking of state validity of interior trace DOFs of HDGAdveditsrc/Discretization/isValidState/isValidStateInteriorTrace_HDG.heditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_CutcellTransitionIBL.hsrc/pde/AnalyticFunction/ScalarFunction1D.htest/sandbox/Adapt1D_DGBR2_Line_Euler_GilesPierce_toy.cpp254e1d0925791e8c44b2c8acc083e45f41b5045d1534271713000https://acdl.mit.edu/csi/user/ursachiursachiursachi@mit.eduQ1D Adaptive Giles Pierce nozzle with p-sequencing 2018-08-14 14:35:13 -0400254e1d0925791e8c44b2c8acc083e45f41b5045dQ1D Adaptive Giles Pierce nozzle with p-sequencingaddtest/sandbox/Adapt1D_DGBR2_Line_Euler_GilesPierce_toy.cppeditsrc/pde/AnalyticFunction/ScalarFunction1D.hsrc/pde/IBL/PDEIBL2D_impl.h999d4cdd3d6f75c3b1d2d5a35c32dab813a94bc71534272359000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed bugs in HDG-IBL interface fluxes and equations 2018-08-14 14:45:59 -0400999d4cdd3d6f75c3b1d2d5a35c32dab813a94bc7Fixed bugs in HDG-IBL interface fluxes and equationseditsrc/pde/IBL/PDEIBL2D_impl.hsrc/pde/NS/BCEuler2D_mitState.hsrc/pde/NS/BCEulermitAVDiffusion2D.hsrc/pde/NS/BCEuler2D.cppsrc/pde/NS/BCEuler2D.htest/unit/pde/NS/BCEuler2D_btest.cppf3fff65a9f4ce86ab988db7a622fd133d3a7ef6e1534276399000https://acdl.mit.edu/csi/user/ursachiursachiursachi@mit.eduAdded supersonic outflow BC 2018-08-14 15:53:19 -0400f3fff65a9f4ce86ab988db7a622fd133d3a7ef6eAdded supersonic outflow BCeditsrc/pde/NS/BCEulermitAVDiffusion2D.heditsrc/pde/NS/BCEuler2D.cppeditsrc/pde/NS/BCEuler2D.heditsrc/pde/NS/BCEuler2D_mitState.hedittest/unit/pde/NS/BCEuler2D_btest.cpptest/sandbox/grids/GPNozzle0_X0.csftest/unit/UnitGrids/XField2D_GilesPierceNozzle_HACK.cpptest/unit/UnitGrids/CMakeLists.txttest/sandbox/Adapt2D_DGBR2_Euler_GilesPierce_AV_toy.cpptest/unit/UnitGrids/XField2D_GilesPierceNozzle_HACK_btest.cpptest/unit/UnitGrids/XField2D_GilesPierceNozzle_HACK.hdd4d83341c1eeae3b57e2e27b6decbebade8f9ee1534276516000https://acdl.mit.edu/csi/user/ursachiursachiursachi@mit.eduCreated grid and test case for adaptive 2D Giles Pierce nozzle 2018-08-14 15:55:16 -0400dd4d83341c1eeae3b57e2e27b6decbebade8f9eeCreated grid and test case for adaptive 2D Giles Pierce nozzleaddtest/sandbox/grids/GPNozzle0_X0.csfaddtest/unit/UnitGrids/XField2D_GilesPierceNozzle_HACK.haddtest/unit/UnitGrids/XField2D_GilesPierceNozzle_HACK_btest.cppedittest/unit/UnitGrids/CMakeLists.txtaddtest/sandbox/Adapt2D_DGBR2_Euler_GilesPierce_AV_toy.cppaddtest/unit/UnitGrids/XField2D_GilesPierceNozzle_HACK.cppsrc/pde/IBL/PDEIBL2D.hc8ceb7489fa755e06585df5f0b5bb2aaef8177f41534295385000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduswitched amp source, and transition front flux treatment 2018-08-14 21:09:45 -0400c8ceb7489fa755e06585df5f0b5bb2aaef8177f4switched amp source, and transition front flux treatmenteditsrc/pde/IBL/PDEIBL2D.hsrc/Discretization/HDG/IntegrandInteriorTrace_HDGAdvective.hsrc/Discretization/HDG/IntegrandBoundaryTrace_None_HDGAdvective.h15987db98eeb2dfd0a54831478a582fcdb267e441534301881000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduminor refactoring on HDGAdv integrands for IBL 2018-08-14 22:58:01 -040015987db98eeb2dfd0a54831478a582fcdb267e44minor refactoring on HDGAdv integrands for IBLeditsrc/Discretization/HDG/IntegrandInteriorTrace_HDGAdvective.heditsrc/Discretization/HDG/IntegrandBoundaryTrace_None_HDGAdvective.hsrc/pde/IBL/PDEIBL2D_impl.hsrc/pde/IBL/PDEIBL2D.h229a962e0030b249f5af7579c9d2f29bea091b001534303735000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduHacking with mitLG type of matching condition at element interfaces and transition front. Hacks are turned off in this commit 2018-08-14 23:28:55 -0400229a962e0030b249f5af7579c9d2f29bea091b00Hacking with mitLG type of matching condition at element interfaces and transition front. Hacks are turned off in this commiteditsrc/pde/IBL/PDEIBL2D_impl.heditsrc/pde/IBL/PDEIBL2D.htest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HubtraceHDGAdvIBL_CutCellNaturalTransition_Panel_btest.cppa9899ac3f7a13ca3c672fc306531df27a79151911534304026000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduminor refactoring 2018-08-14 23:33:46 -0400a9899ac3f7a13ca3c672fc306531df27a7915191minor refactoringedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HubtraceHDGAdvIBL_CutCellNaturalTransition_Panel_btest.cppsrc/Discretization/Galerkin/Stabilization_Galerkin.htest/sandbox/Adapt2D_DGBR2_NavierStokes_FlatPlate_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cpp91d2793539fff760d025701ee87a18156e4593231534427550000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduworking on a new tau and moving some stuff to dev 2018-08-16 09:52:30 -040091d2793539fff760d025701ee87a18156e459323working on a new tau and moving some stuff to deveditsrc/Discretization/Galerkin/Stabilization_Galerkin.hedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cppedittest/sandbox/Adapt2D_DGBR2_NavierStokes_FlatPlate_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpp81fbf18ffc8eb744754f00954ab5cfea7176844c1534429025000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduallowing command line spec 2018-08-16 10:17:05 -040081fbf18ffc8eb744754f00954ab5cfea7176844callowing command line specedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpp66f75faffe9ab1d4e334bd40027b2d2aee315fac1534440204000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduVMS seems to be adapting properlygit status! 2018-08-16 13:23:24 -040066f75faffe9ab1d4e334bd40027b2d2aee315facVMS seems to be adapting properlygit status!edittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cpp6b0a47619b1267a4d15386a1a12d1764d11b16161534440381000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educonflicts 2018-08-16 13:26:21 -04006b0a47619b1267a4d15386a1a12d1764d11b1616conflictsedittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cpp87f2853f21021fae4dba56153ca7b268ccaa0e391534440739000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edutypo 2018-08-16 13:32:19 -040087f2853f21021fae4dba56153ca7b268ccaa0e39typoedittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cppsrc/pde/NDConvert/PDENDConvertSpace2D.hsrc/Discretization/HDG/IntegrandInteriorTrace_HDGAdvective.hsrc/pde/IBL/PDEIBL2D.hsrc/pde/IBL/PDEIBL2D_impl.hfcdf78b6f6e77463395fe25a5125b65050d05ad81534443879000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduput HDG interface flux and matching equation (source) into one function 2018-08-16 14:24:39 -0400fcdf78b6f6e77463395fe25a5125b65050d05ad8put HDG interface flux and matching equation (source) into one functioneditsrc/Discretization/HDG/IntegrandInteriorTrace_HDGAdvective.heditsrc/pde/IBL/PDEIBL2D.heditsrc/pde/NDConvert/PDENDConvertSpace2D.heditsrc/pde/IBL/PDEIBL2D_impl.hsrc/pde/IBL/PDEIBL2D_impl.h997a0e2cdfd678789521ae0c23ecadc310973f2e1534444585000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed the interface flux and source for the other version of HDG-IBL as well 2018-08-16 14:36:25 -0400997a0e2cdfd678789521ae0c23ecadc310973f2eFixed the interface flux and source for the other version of HDG-IBL as welleditsrc/pde/IBL/PDEIBL2D_impl.hsrc/Discretization/Galerkin/Stabilization_Galerkin.hd822d5046a855f249e8a3e67448de599bd190c3d1534454846000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educhanging back to nDOF 2018-08-16 17:27:26 -0400d822d5046a855f249e8a3e67448de599bd190c3dchanging back to nDOFeditsrc/Discretization/Galerkin/Stabilization_Galerkin.htest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppsrc/Discretization/Galerkin/Stabilization_Galerkin.hd238911a1bc796ced0e6c78eac891ea830fbe2711534460153000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edutesting theory on linear basis for tau 2018-08-16 18:55:53 -0400d238911a1bc796ced0e6c78eac891ea830fbe271testing theory on linear basis for tauedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppeditsrc/Discretization/Galerkin/Stabilization_Galerkin.hsrc/Discretization/Galerkin/Stabilization_Galerkin.hc16a1b97ecdfba79cafb151578079282957c2a9e1534505854000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edureverting to develop 2018-08-17 07:37:34 -0400c16a1b97ecdfba79cafb151578079282957c2a9ereverting to developeditsrc/Discretization/Galerkin/Stabilization_Galerkin.hsrc/Adaptation/MOESS/NodalMetrics.cppsrc/Adaptation/MeshAdapter.hsrc/Adaptation/MOESS/NodalMetrics.hsrc/Adaptation/MeshAdapter.cpp780e9e4f0f8b6e2579c106459189174df29a217a1534541694000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edutool to guide mesh generator towards target metric from implied one (this build will certainly fail but i just want to get things in the repo 2018-08-17 17:34:54 -0400780e9e4f0f8b6e2579c106459189174df29a217atool to guide mesh generator towards target metric from implied one (this build will certainly fail but i just want to get things in the repoeditsrc/Adaptation/MOESS/NodalMetrics.cppeditsrc/Adaptation/MeshAdapter.heditsrc/Adaptation/MeshAdapter.cppeditsrc/Adaptation/MOESS/NodalMetrics.hsrc/Discretization/Galerkin/Stabilization_Galerkin.hc7087ce03cb5ac2cadbb1057930bd0dc5a5f01511534773379000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educhanges to Experimental2, gives p order scaling stabilization now 2018-08-20 09:56:19 -0400c7087ce03cb5ac2cadbb1057930bd0dc5a5f0151changes to Experimental2, gives p order scaling stabilization noweditsrc/Discretization/Galerkin/Stabilization_Galerkin.hsrc/Discretization/Galerkin/Stabilization_Galerkin.h3f2ff9521a8cb148115c6d29e79e03f3a2ef05c11534773941000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educhanges to Experimental2, gives p order scaling stabilization now 2018-08-20 10:05:41 -04003f2ff9521a8cb148115c6d29e79e03f3a2ef05c1changes to Experimental2, gives p order scaling stabilization noweditsrc/Discretization/Galerkin/Stabilization_Galerkin.hsrc/pde/NS/BCEuler2D_mitState.htest/sandbox/Solve2D_DGBR2_Euler_ForwardStep_AV_ST_toy.cpp15ab1d0635ff236506f59d67f4b1e1f13d22e4d01534875355000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduChanges to help converge forward facing step 2018-08-21 14:15:55 -040015ab1d0635ff236506f59d67f4b1e1f13d22e4d0Changes to help converge forward facing stepedittest/sandbox/Solve2D_DGBR2_Euler_ForwardStep_AV_ST_toy.cppeditsrc/pde/NS/BCEuler2D_mitState.hsrc/Field/Field.hsrc/Discretization/Galerkin/JacobianInteriorTrace_Galerkin.hsrc/LinearAlgebra/SparseLinAlg/PETSc/MDFOrdering.hsrc/Discretization/Galerkin/JacobianCell_Galerkin_BDF.hsrc/Discretization/HDG/JacobianBoundaryTrace_FieldTrace_HDG.hsrc/Field/FieldBase.htest/system/LocalSolve/ElementLocalSolve2D_DGBR2_Triangle_AD_btest.cppsrc/MPI/serialize_DenseLinAlg_MatrixS.htest/unit/Discretization/DG/ResidualBoundaryTrace_Dirichlet_mitState_DGBR2_AD_btest.cppsrc/Field/FieldVolume_DG_Cell_impl.htest/unit/Discretization/DG/ResidualBoundaryTrace_LinearScalar_sansLG_DGBR2_AD_btest.cpptest/system/LocalSolve/LocalSolve3D_Split_DGBR2_Tet_AD_btest.cppsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver.hsrc/pde/AdvectionDiffusion/ViscousFlux2D.htest/system/LocalSolve/CMakeLists.txttest/unit/Discretization/DG/JacobianBoundaryTrace_Dirichlet_mitState_DGBR2_TwoPhase_btest.cppsrc/Discretization/DG/AlgebraicEquationSet_DGBR2_impl.htest/system/LocalSolve/LocalSolve3D_DGAdvective_Tet_AD_btest.cppsrc/UserInterfaces/capsAIM/sansLIPAIM.cppsrc/Discretization/Galerkin/SolutionData_Galerkin_Stabilized.hsrc/Discretization/LIP_HACK/JacobianInteriorTrace_Galerkin_IPTF.hsrc/Field/FieldArea_DG_Cell_impl.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Project.htest/unit/Discretization/HDG/JacobianTest_HDG.hsrc/Discretization/DG/SolutionData_DGAdvective.hsrc/Discretization/DG/ResidualBoundaryTrace_DGBR2.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized.htest/system/LocalSolve/LocalSolve3D_DGBR2_Tet_AD_btest.cppsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.hsrc/Discretization/HDG/JacobianCell_HDG.hsrc/Discretization/HDG/JacobianBoundaryTrace_HDG.hsrc/Discretization/LIP_HACK/JacobianBoundaryTrace_sansLG_Galerkin_IPTF.hsrc/Field/FieldLine_DG_Cell_impl.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixS_Instantiate.cppsrc/Discretization/DG/JacobianInteriorTrace_DGBR2.hsrc/Field/Field_DG_CellBase_impl.hsrc/Adaptation/MOESS/SolverInterface_Galerkin.hsrc/Discretization/Galerkin/JacobianCell_Galerkin_HB.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin.hsrc/Discretization/Galerkin/JacobianCell_Galerkin.hsrc/Field/Partition/XField_Lagrange_balance_impl.hsrc/Field/FieldLine_Instantiate_2D.cppsrc/Discretization/Potential_Drela/JacobianCell_CG_Potential_Drela.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_factorize.hsrc/Discretization/Galerkin/JacobianBoundaryTrace_Dirichlet_mitLG_Galerkin.hsrc/Field/Partition/XField_Lagrange.cppscripts/jenkins/cmake_jenkins.shsrc/Field/FieldLine_DG_Cell.htest/system/LocalSolve/ElementLocalSolve3D_DGBR2_Tet_AD_btest.cppsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized_LiftedBoundary.hsrc/Discretization/DG/JacobianCell_DGBR2.hsrc/Adaptation/MOESS/SolverInterface_DGBR2.hsrc/Discretization/DG/JacobianBoundaryTrace_mitLG_DGBR2.hsrc/Field/FieldArea_Instantiate_2D.cppscripts/valgrind/OpenMPI.suppsrc/Discretization/Potential_Drela/AlgebraicEquationSet_CG_Potential_Drela.hsrc/Field/Field_impl.hsrc/Field/Field_DG_CellBase.hsrc/Discretization/Galerkin/JacobianBoundaryTrace_Galerkin.htest/unit/LinearAlgebra/SparseLinAlg/PETSc/PETSc_MDF_Ordering_btest.cppsrc/Discretization/DG/SolutionData_DGBR2_Block2.hsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective_impl.hsrc/Discretization/Galerkin/JacobianBoundaryTrace_mitLG_Galerkin.hsrc/Field/FieldArea_DG_Cell.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppsrc/Discretization/FV_TPFA/AlgebraicEquationSet_FV_TPFA.hsrc/Discretization/DG/AlgebraicEquationSet_TransitionIBL.htest/unit/Field/XField_Lagrange_Partition_btest.cppsrc/Discretization/Galerkin/ResidualBoundaryTrace_Galerkin.hsrc/MPI/serialize_SurrealS.hsrc/Discretization/DG/JacobianBoundaryTrace_DGBR2.hsrc/UserInterfaces/capsAIM/markWakeEdges.cppsrc/Discretization/DG/SolutionData_DGBR2.htest/system/LocalSolve/ElementLocalSolve3D_DGAdvective_Tet_AD_btest.cpptest/unit/Field/Field2D_DG_Triangle_btest.cppsrc/Field/FieldVolume_DG_Cell.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_impl.htest/system/LocalSolve/EdgeLocalSolve2D_Primal_DGBR2_Triangle_AD_btest.cppsrc/Adaptation/MOESS/SolverInterface_DGAdvective.hsrc/LinearAlgebra/SparseLinAlg/PETSc/MDFOrdering.cppsrc/UserInterfaces/capsAIM/intersectWake.cppsrc/Discretization/Potential_Drela/JacobianBoundaryTrace_CG_Potential_Drela.hsrc/Adaptation/MOESS/SolverInterface_DGBR2_Block2x2.htest/unit/Discretization/DG/Adjoint_LiftingOperator_DGBR2_Triangle_NS_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeIBL3eqmClosure_btest.cpp0986f7c3abfd7f46f80dff44dd524164da53731c1534887159000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduDG field now includes zombies 2018-08-21 17:32:39 -04000986f7c3abfd7f46f80dff44dd524164da53731cDG field now includes zombieseditsrc/UserInterfaces/capsAIM/markWakeEdges.cppeditsrc/Adaptation/MOESS/SolverInterface_DGBR2.heditsrc/Discretization/Galerkin/ResidualBoundaryTrace_Galerkin.heditsrc/Field/FieldBase.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppeditsrc/Field/FieldArea_DG_Cell.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeIBL3eqmClosure_btest.cppeditsrc/Field/FieldVolume_DG_Cell.heditsrc/Discretization/DG/AlgebraicEquationSet_TransitionIBL.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin.heditsrc/Discretization/Galerkin/JacobianCell_Galerkin.heditsrc/Discretization/Galerkin/JacobianInteriorTrace_Galerkin.heditsrc/Field/FieldLine_DG_Cell.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_impl.hdeletetest/system/LocalSolve/LocalSolve3D_DGBR2_Tet_AD_btest.cppedittest/unit/Discretization/HDG/JacobianTest_HDG.heditsrc/Field/Field_DG_CellBase_impl.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/MDFOrdering.haddtest/system/LocalSolve/ElementLocalSolve3D_DGBR2_Tet_AD_btest.cppeditsrc/Discretization/DG/JacobianInteriorTrace_DGBR2.heditsrc/Discretization/HDG/JacobianBoundaryTrace_HDG.heditsrc/Field/FieldLine_DG_Cell_impl.heditsrc/Discretization/FV_TPFA/AlgebraicEquationSet_FV_TPFA.heditsrc/MPI/serialize_DenseLinAlg_MatrixS.heditsrc/Adaptation/MOESS/SolverInterface_Galerkin.heditsrc/Field/FieldArea_Instantiate_2D.cppedittest/unit/Discretization/DG/JacobianBoundaryTrace_Dirichlet_mitState_DGBR2_TwoPhase_btest.cppeditsrc/Discretization/DG/SolutionData_DGBR2.heditsrc/Field/Field.hedittest/unit/Field/Field2D_DG_Triangle_btest.cppaddtest/system/LocalSolve/ElementLocalSolve3D_DGAdvective_Tet_AD_btest.cppaddsrc/MPI/serialize_SurrealS.heditsrc/Discretization/LIP_HACK/JacobianInteriorTrace_Galerkin_IPTF.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized_LiftedBoundary.heditsrc/Discretization/DG/SolutionData_DGBR2_Block2.heditsrc/Discretization/Galerkin/JacobianBoundaryTrace_mitLG_Galerkin.heditsrc/Field/Field_impl.heditsrc/Discretization/DG/ResidualBoundaryTrace_DGBR2.heditsrc/Field/FieldVolume_DG_Cell_impl.hedittest/unit/LinearAlgebra/SparseLinAlg/PETSc/PETSc_MDF_Ordering_btest.cppeditsrc/LinearAlgebra/SparseLinAlg/PETSc/MDFOrdering.cppedittest/system/LocalSolve/EdgeLocalSolve2D_Primal_DGBR2_Triangle_AD_btest.cppeditsrc/Discretization/DG/JacobianBoundaryTrace_mitLG_DGBR2.heditsrc/UserInterfaces/capsAIM/sansLIPAIM.cppeditsrc/Discretization/Galerkin/SolutionData_Galerkin_Stabilized.heditsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.heditsrc/Discretization/Potential_Drela/JacobianBoundaryTrace_CG_Potential_Drela.hedittest/system/LocalSolve/ElementLocalSolve2D_DGBR2_Triangle_AD_btest.cppeditsrc/Discretization/Galerkin/AlgebraicEquationSet_Project.heditsrc/Discretization/Potential_Drela/JacobianCell_CG_Potential_Drela.hedittest/unit/Field/XField_Lagrange_Partition_btest.cppeditsrc/Adaptation/MOESS/SolverInterface_DGAdvective.heditsrc/Field/FieldLine_Instantiate_2D.cppeditscripts/jenkins/cmake_jenkins.sheditsrc/Discretization/DG/JacobianBoundaryTrace_DGBR2.heditsrc/Discretization/HDG/JacobianBoundaryTrace_FieldTrace_HDG.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_factorize.heditsrc/Discretization/DG/JacobianCell_DGBR2.heditsrc/Field/Field_DG_CellBase.heditscripts/valgrind/OpenMPI.suppeditsrc/pde/AdvectionDiffusion/ViscousFlux2D.hedittest/unit/Discretization/DG/Adjoint_LiftingOperator_DGBR2_Triangle_NS_btest.cppeditsrc/Discretization/Galerkin/JacobianBoundaryTrace_Galerkin.hedittest/system/LocalSolve/CMakeLists.txteditsrc/Discretization/Galerkin/JacobianBoundaryTrace_Dirichlet_mitLG_Galerkin.heditsrc/Discretization/Galerkin/JacobianCell_Galerkin_BDF.heditsrc/Discretization/LIP_HACK/JacobianBoundaryTrace_sansLG_Galerkin_IPTF.heditsrc/Field/FieldArea_DG_Cell_impl.heditsrc/Field/Partition/XField_Lagrange.cppeditsrc/Field/Partition/XField_Lagrange_balance_impl.heditsrc/Discretization/HDG/JacobianCell_HDG.hedittest/unit/Discretization/DG/ResidualBoundaryTrace_LinearScalar_sansLG_DGBR2_AD_btest.cppeditsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective_impl.heditsrc/Discretization/DG/AlgebraicEquationSet_DGBR2_impl.hedittest/unit/Discretization/DG/ResidualBoundaryTrace_Dirichlet_mitState_DGBR2_AD_btest.cppeditsrc/Adaptation/MOESS/SolverInterface_DGBR2_Block2x2.heditsrc/UserInterfaces/capsAIM/intersectWake.cppdeletetest/system/LocalSolve/LocalSolve3D_Split_DGBR2_Tet_AD_btest.cppeditsrc/Discretization/Galerkin/JacobianCell_Galerkin_HB.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixS_Instantiate.cppeditsrc/Discretization/DG/SolutionData_DGAdvective.heditsrc/Discretization/Potential_Drela/AlgebraicEquationSet_CG_Potential_Drela.hdeletetest/system/LocalSolve/LocalSolve3D_DGAdvective_Tet_AD_btest.cppsrc/MPI/serialize_DenseLinAlg_MatrixS.hef8b07aff03769c60731abb57f814eaaa5632f021534891294000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMinor fix 2018-08-21 18:41:34 -0400ef8b07aff03769c60731abb57f814eaaa5632f02Minor fixeditsrc/MPI/serialize_DenseLinAlg_MatrixS.htest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cpp1cb033bb8ac157eb008b8473a444332327d772311534893722000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edutweaks 2018-08-21 19:22:02 -04001cb033bb8ac157eb008b8473a444332327d77231tweaksedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppedittest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cppsrc/Adaptation/MOESS/SolverInterface_Galerkin.htest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cpp11bf817f4e2d70814e857efb6fa62489d22fc9c51534894398000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edufix to SolverInterface, and changes to NSFlat Plate 2018-08-21 19:33:18 -040011bf817f4e2d70814e857efb6fa62489d22fc9c5fix to SolverInterface, and changes to NSFlat Plateedittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cppeditsrc/Adaptation/MOESS/SolverInterface_Galerkin.htest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cppsrc/Discretization/Galerkin/Stabilization_Galerkin.h5ea6f50dd12b47e3d767e838beca1455c220644d1534894836000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduusing Exp not Exp2 as missing some instanations for LinAlg. 2018-08-21 19:40:36 -04005ea6f50dd12b47e3d767e838beca1455c220644dusing Exp not Exp2 as missing some instanations for LinAlg.edittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cppeditsrc/Discretization/Galerkin/Stabilization_Galerkin.hsrc/Field/Field_impl.h0bd70aefbd9f880ea5613e3d9e58721d6abc0c211534901384000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded missing include 2018-08-21 21:29:44 -04000bd70aefbd9f880ea5613e3d9e58721d6abc0c21Added missing includeeditsrc/Field/Field_impl.htest/system/LocalSolve/LocalSolve2D_DGBR2_Triangle_AD_btest.cppaf10a15da7b9508c5db5d9e72eac1d5df759f0411534901506000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduNeed to remove LocalSolve2D_DGBR2_Triangle_AD_btest 2018-08-21 21:31:46 -0400af10a15da7b9508c5db5d9e72eac1d5df759f041Need to remove LocalSolve2D_DGBR2_Triangle_AD_btestedittest/system/LocalSolve/LocalSolve2D_DGBR2_Triangle_AD_btest.cpptest/system/LocalSolve/LocalSolve2D_Split_DGBR2_Triangle_AD_btest.cpptest/system/LocalSolve/LocalSolve2D_DGBR2_Triangle_AD_btest.cpptest/system/LocalSolve/ElementLocalSolve2D_DGBR2_Triangle_AD_btest.cppf259452a84635744b6e9c05a22823aedfe49c6ba1534909401000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduProper parallel DGBR2 LocalSolve 2018-08-21 23:43:21 -0400f259452a84635744b6e9c05a22823aedfe49c6baProper parallel DGBR2 LocalSolvedeletetest/system/LocalSolve/LocalSolve2D_Split_DGBR2_Triangle_AD_btest.cppdeletetest/system/LocalSolve/LocalSolve2D_DGBR2_Triangle_AD_btest.cppedittest/system/LocalSolve/ElementLocalSolve2D_DGBR2_Triangle_AD_btest.cpptest/system/LocalSolve/ElementLocalSolve3D_DGBR2_Tet_AD_btest.cpp0bdf3b7c3b3cf3386df83a934148539a3fdfe7fc1534936390000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduReduce runtime for ElementLocalSolve3D_DGBR2_Tet_AD_btest 2018-08-22 07:13:10 -04000bdf3b7c3b3cf3386df83a934148539a3fdfe7fcReduce runtime for ElementLocalSolve3D_DGBR2_Tet_AD_btestedittest/system/LocalSolve/ElementLocalSolve3D_DGBR2_Tet_AD_btest.cpptest/system/LocalSolve/ElementLocalSolve2D_DGBR2_Triangle_AD_btest.cpptest/system/LocalSolve/ElementLocalSolve3D_DGBR2_Tet_AD_btest.cpp3918b85d55977c2049c0086de12be45cd2e9393d1534937388000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduReduced number of partitions for ElementLocalSolve2D_DGBR2_Triangle_AD_btest 2018-08-22 07:29:48 -04003918b85d55977c2049c0086de12be45cd2e9393dReduced number of partitions for ElementLocalSolve2D_DGBR2_Triangle_AD_btestedittest/system/LocalSolve/ElementLocalSolve2D_DGBR2_Triangle_AD_btest.cppedittest/system/LocalSolve/ElementLocalSolve3D_DGBR2_Tet_AD_btest.cppsrc/Discretization/Galerkin/JacobianCell_Galerkin_HB.hsrc/Field/FieldBase_impl.hsrc/Field/FieldSequence.hCMakeInclude/Finds/FindCAPS.cmakesrc/Discretization/Galerkin/JacobianCell_Galerkin_BDF.htest/unit/Field/Field2D_DG_Triangle_btest.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppcc35ea66bce6f6981e25121ba3375bdce966b5361534952860000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduVarious fixes 2018-08-22 11:47:40 -0400cc35ea66bce6f6981e25121ba3375bdce966b536Various fixeseditsrc/Discretization/Galerkin/JacobianCell_Galerkin_HB.heditsrc/Field/FieldSequence.heditsrc/Field/FieldBase_impl.hedittest/unit/Field/Field2D_DG_Triangle_btest.cppedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppeditCMakeInclude/Finds/FindCAPS.cmakeeditsrc/Discretization/Galerkin/JacobianCell_Galerkin_BDF.hsrc/Meshing/libMeshb/WriteSolution_libMeshb.cpptest/unit/Meshing/libMeshb/ReadSolution_libMeshb_btest.cppsrc/Meshing/libMeshb/ReadSolution_libMeshb.cppsrc/Field/Partition/XField_Lagrange.hsrc/Meshing/libMeshb/ReadSolution_libMeshb.hsrc/Meshing/libMeshb/CMakeLists.txttest/unit/Meshing/libMeshb/WriteSolution_libMeshb_btest.cppf3332362d56b84325ce3e5aff88d7bf6db1b20c01534963095000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded libMeshb solution reader 2018-08-22 14:38:15 -0400f3332362d56b84325ce3e5aff88d7bf6db1b20c0Added libMeshb solution readeraddsrc/Meshing/libMeshb/ReadSolution_libMeshb.haddtest/unit/Meshing/libMeshb/ReadSolution_libMeshb_btest.cppeditsrc/Meshing/libMeshb/CMakeLists.txtaddsrc/Meshing/libMeshb/ReadSolution_libMeshb.cppeditsrc/Field/Partition/XField_Lagrange.hedittest/unit/Meshing/libMeshb/WriteSolution_libMeshb_btest.cppeditsrc/Meshing/libMeshb/WriteSolution_libMeshb.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppsrc/Field/Field_impl.hsrc/Field/XField_impl.hsrc/Field/Field.hsrc/Meshing/libMeshb/WriteMesh_libMeshb.cppsrc/Adaptation/MeshAdapter.cppsrc/Field/Partition/XField_Lagrange.hsrc/Field/Partition/XField_Lagrange_balance_impl.hsrc/Meshing/refine/MesherInterface_refine.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppf5d4e7cb8e7138f8c3d67bd267d16f3b0e41ca701534994032000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduReworked multiscale metric so it mostly works 2018-08-22 23:13:52 -0400f5d4e7cb8e7138f8c3d67bd267d16f3b0e41ca70Reworked multiscale metric so it mostly workseditsrc/Field/Field_impl.hedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppeditsrc/Meshing/refine/MesherInterface_refine.cppeditsrc/Meshing/libMeshb/WriteMesh_libMeshb.cppeditsrc/Adaptation/MeshAdapter.cppeditsrc/Field/Partition/XField_Lagrange_balance_impl.heditsrc/Field/XField_impl.heditsrc/Field/Field.heditsrc/Field/Partition/XField_Lagrange.htest/unit/Meshing/libMeshb/ReadSolution_libMeshb_btest.cppsrc/Meshing/libMeshb/ReadSolution_libMeshb.cppsrc/Adaptation/MeshAdapter.cppc3f889ce5d94bdeb98f2ae3746adcbd7bbc5f3bb1535020644000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMinor fixes 2018-08-23 06:37:24 -0400c3f889ce5d94bdeb98f2ae3746adcbd7bbc5f3bbMinor fixeseditsrc/Adaptation/MeshAdapter.cppeditsrc/Meshing/libMeshb/ReadSolution_libMeshb.cppedittest/unit/Meshing/libMeshb/ReadSolution_libMeshb_btest.cppsrc/Adaptation/callMesher2D.cppsrc/Adaptation/callMesher.hsrc/Field/tools/for_each_BoundaryFieldTraceGroup_Cell.hsrc/Adaptation/MeshAdapter.cppsrc/Adaptation/callMesher3D.cppsrc/Adaptation/callMesher1D.cppsrc/Adaptation/CMakeLists.txttest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cpp5cb822dcfa6849129aaae6a2ed5b91e0aa0fe4471535034133000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix link error. Zero out Mach number of walls for MultiScale metric. 2018-08-23 10:22:13 -04005cb822dcfa6849129aaae6a2ed5b91e0aa0fe447Fix link error. Zero out Mach number of walls for MultiScale metric.addsrc/Adaptation/callMesher1D.cppaddsrc/Adaptation/callMesher2D.cppaddsrc/Adaptation/callMesher3D.cppeditsrc/Field/tools/for_each_BoundaryFieldTraceGroup_Cell.haddsrc/Adaptation/callMesher.heditsrc/Adaptation/CMakeLists.txtedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppeditsrc/Adaptation/MeshAdapter.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppf887916f4f1801b303c615d7cdf7f5e7f3d3d1fd1535053303000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduTweaks to DeltaWing MultiScale 2018-08-23 15:41:43 -0400f887916f4f1801b303c615d7cdf7f5e7f3d3d1fdTweaks to DeltaWing MultiScaleedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cpp0c96806ce3b00a2555d7cc23da8e3f3c02b24b831535053387000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduTypo 2018-08-23 15:43:07 -04000c96806ce3b00a2555d7cc23da8e3f3c02b24b83Typoedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppsrc/Discretization/DG/FunctionalBoundaryTrace_DGBR2.htest/unit/Discretization/DG/FunctionalBoundaryTrace_DGBR2_btest.cppff89f011cda23f2d74f05175f112b525b8847c451535060808000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed bug in FunctionalBoundaryTrace_DGBR2 related to new partitioning 2018-08-23 17:46:48 -0400ff89f011cda23f2d74f05175f112b525b8847c45Fixed bug in FunctionalBoundaryTrace_DGBR2 related to new partitioningeditsrc/Discretization/DG/FunctionalBoundaryTrace_DGBR2.hedittest/unit/Discretization/DG/FunctionalBoundaryTrace_DGBR2_btest.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppsrc/Discretization/DG/SetFieldBoundaryTrace_DGBR2_AdjointLO.hsrc/ErrorEstimate/DG/ErrorEstimateBoundaryTrace_DGBR2.hsrc/Discretization/DG/SetFieldBoundaryTrace_DGBR2_LiftingOperator.hsrc/Discretization/DG/ResidualBoundaryTrace_FieldTrace_DGBR2.hsrc/Discretization/DG/JacobianBoundaryTrace_mitLG_DGBR2.htest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppeb3268dc7e0edf901b8e37557c09e7b396f2bd3b1535126683000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed some bugs related to new partitioning 2018-08-24 12:04:43 -0400eb3268dc7e0edf901b8e37557c09e7b396f2bd3bFixed some bugs related to new partitioningedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppeditsrc/Discretization/DG/ResidualBoundaryTrace_FieldTrace_DGBR2.heditsrc/Discretization/DG/SetFieldBoundaryTrace_DGBR2_AdjointLO.heditsrc/ErrorEstimate/DG/ErrorEstimateBoundaryTrace_DGBR2.heditsrc/Discretization/DG/JacobianBoundaryTrace_mitLG_DGBR2.heditsrc/Discretization/DG/SetFieldBoundaryTrace_DGBR2_LiftingOperator.htest/unit/ErrorEstimate/ErrorEstimateBoundaryTrace_DGBR2_AD_btest.cppsrc/Discretization/DG/SetFieldBoundaryTrace_DGBR2_AdjointLO.htest/unit/Discretization/DG/SetFieldBoundaryTrace_DGBR2_LO_AD_Dirichlet_mitState_btest.cppsrc/Discretization/DG/SetFieldBoundaryTrace_DGBR2_LiftingOperator.hsrc/ErrorEstimate/DG/ErrorEstimateBoundaryTrace_DGBR2.hdf5161c3d8a445f977425c3c778085ca560436631535127947000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduForgot some steps in the fixes 2018-08-24 12:25:47 -0400df5161c3d8a445f977425c3c778085ca56043663Forgot some steps in the fixesedittest/unit/ErrorEstimate/ErrorEstimateBoundaryTrace_DGBR2_AD_btest.cppeditsrc/Discretization/DG/SetFieldBoundaryTrace_DGBR2_AdjointLO.hedittest/unit/Discretization/DG/SetFieldBoundaryTrace_DGBR2_LO_AD_Dirichlet_mitState_btest.cppeditsrc/Discretization/DG/SetFieldBoundaryTrace_DGBR2_LiftingOperator.heditsrc/ErrorEstimate/DG/ErrorEstimateBoundaryTrace_DGBR2.hsrc/UserInterfaces/capsAIM/sansLIPAIM.cpp571b1a6faf306e0bed13026bd0a08ce4a9713b111535146143000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduupdated sansLIPAIM with consistent function signatures 2018-08-24 17:29:03 -0400571b1a6faf306e0bed13026bd0a08ce4a9713b11updated sansLIPAIM with consistent function signatureseditsrc/UserInterfaces/capsAIM/sansLIPAIM.cppsrc/Field/FieldVolume_CG_InteriorTrace_impl.hsrc/Field/FieldVolume_CG_Trace_impl.htest/unit/Field/Field3D_CG_Tetrahedron_btest.cpptest/unit/Field/XField3D_Curved_Hex_btest.cppsrc/Field/FieldBase.htest/unit/Field/Field3D_CG_Hexahedron_btest.cppsrc/Field/FieldVolume_CG_Cell_impl.htest/unit/Field/XField3D_Curved_Tet_btest.cppsrc/Field/XFieldVolume_buildFrom_impl.hsrc/Field/FieldArea_CG_Cell_impl.hsrc/Field/FieldVolume_CG_BoundaryTrace_impl.hsrc/Field/Field_CG_Topology.hsrc/Field/Field_CG_Topology.cpp30182b797bab2c936efb9c017ad4b1b1a19b21831535171456000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduReworking CG DOF ordering 2018-08-25 00:30:56 -040030182b797bab2c936efb9c017ad4b1b1a19b2183Reworking CG DOF orderingeditsrc/Field/FieldVolume_CG_Cell_impl.heditsrc/Field/XFieldVolume_buildFrom_impl.heditsrc/Field/FieldVolume_CG_BoundaryTrace_impl.hedittest/unit/Field/Field3D_CG_Hexahedron_btest.cppedittest/unit/Field/Field3D_CG_Tetrahedron_btest.cppeditsrc/Field/FieldBase.hedittest/unit/Field/XField3D_Curved_Hex_btest.cppeditsrc/Field/FieldVolume_CG_InteriorTrace_impl.heditsrc/Field/FieldVolume_CG_Trace_impl.heditsrc/Field/Field_CG_Topology.cppeditsrc/Field/FieldArea_CG_Cell_impl.hedittest/unit/Field/XField3D_Curved_Tet_btest.cppeditsrc/Field/Field_CG_Topology.hsrc/pde/NS/BCEuler2D_mitState.hsrc/pde/NS/BCEuler2D.hsrc/pde/NS/BCEulermitAVDiffusion2D.hsrc/pde/NS/PDEEulermitAVDiffusion2D.htest/sandbox/Solve2D_DGBR2_Euler_ForwardStep_AV_ST_toy.cpp3d9ae19b30b05d113281a47daadc6e901e6779491535284483000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduAdded spactime diffusion option for 2D Euler with artificial viscosity 2018-08-26 07:54:43 -04003d9ae19b30b05d113281a47daadc6e901e677949Added spactime diffusion option for 2D Euler with artificial viscosityeditsrc/pde/NS/BCEuler2D.heditsrc/pde/NS/BCEuler2D_mitState.heditsrc/pde/NS/BCEulermitAVDiffusion2D.heditsrc/pde/NS/PDEEulermitAVDiffusion2D.hedittest/sandbox/Solve2D_DGBR2_Euler_ForwardStep_AV_ST_toy.cpptest/sandbox/Solve2D_DGBR2_Triangle_Euler_RAE2822_ArtificialViscosity_Block_toy.cpptest/sandbox/Solve2D_DGBR2_HOW5_CI1_Block_toy.cpptest/sandbox/Solve2D_DGBR2_Triangle_Euler_Ramp_ArtificialViscosity_toy.cpptest/sandbox/Solve2D_DGBR2_Triangle_Euler_NACA0012_ArtificialViscosity_toy.cpptest/unit/pde/NS/PDEEulermitAVDiffusion2D_btest.cpptest/unit/pde/ArtificialViscosity/AVSensor_Source2D_Euler_btest.cpptest/unit/pde/ArtificialViscosity/PDEmitAVSensor2D_btest.cpptest/sandbox/Solve2D_DGBR2_HOW5_VI2_AV_toy.cpptest/unit/pde/ArtificialViscosity/AVSensor_ViscousFlux2D_btest.cpptest/sandbox/Solve2D_DGBR2_Triangle_Euler_RAE2822_ArtificialViscosity_toy.cpptest/sandbox/Solve2D_DGBR2_Triangle_Euler_Ramp_ArtificialViscosity_Block2x2_toy.cpptest/sandbox/Adapt2D_DGBR2_HOW5_CI1_toy.cpptest/sandbox/Solve2D_DGBR2_Quad_Euler_ForwardFacingStep_AV_BDF_toy.cpptest/unit/pde/NS/BCEulermitAVDiffusion2D_btest.cpptest/sandbox/Solve2D_DGBR2_HOW5_CI1_toy.cppf0e2581b0a8b43f5db8dbd91705d81b6514f6e291535287792000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduUpdated test for new PDEEuler2D with artificial viscosity interface 2018-08-26 08:49:52 -0400f0e2581b0a8b43f5db8dbd91705d81b6514f6e29Updated test for new PDEEuler2D with artificial viscosity interfaceedittest/sandbox/Adapt2D_DGBR2_HOW5_CI1_toy.cppedittest/sandbox/Solve2D_DGBR2_Triangle_Euler_RAE2822_ArtificialViscosity_Block_toy.cppedittest/sandbox/Solve2D_DGBR2_Triangle_Euler_Ramp_ArtificialViscosity_toy.cppedittest/sandbox/Solve2D_DGBR2_Triangle_Euler_NACA0012_ArtificialViscosity_toy.cppedittest/unit/pde/NS/PDEEulermitAVDiffusion2D_btest.cppedittest/sandbox/Solve2D_DGBR2_Quad_Euler_ForwardFacingStep_AV_BDF_toy.cppedittest/unit/pde/ArtificialViscosity/PDEmitAVSensor2D_btest.cppedittest/unit/pde/ArtificialViscosity/AVSensor_ViscousFlux2D_btest.cppedittest/sandbox/Solve2D_DGBR2_Triangle_Euler_RAE2822_ArtificialViscosity_toy.cppedittest/sandbox/Solve2D_DGBR2_HOW5_CI1_Block_toy.cppedittest/sandbox/Solve2D_DGBR2_HOW5_CI1_toy.cppedittest/sandbox/Solve2D_DGBR2_HOW5_VI2_AV_toy.cppedittest/unit/pde/NS/BCEulermitAVDiffusion2D_btest.cppedittest/sandbox/Solve2D_DGBR2_Triangle_Euler_Ramp_ArtificialViscosity_Block2x2_toy.cppedittest/unit/pde/ArtificialViscosity/AVSensor_Source2D_Euler_btest.cppsrc/Field/Element/UniqueElem.htest/unit/Field/XField2D_Local_Split_Part1_btest.cpptest/unit/Field/Field2D_CG_Triangle_btest.cppDeveloperEmailAddressestest/unit/Discretization/DG/FunctionalBoundaryTrace_DGBR2_btest.cppsrc/Field/Element/UniqueElem.cppsrc/Field/Field_CG_CellBase.htest/unit/Field/Field2D_EdgeLocal_PrimalNeighbors_CG_btest.cppsrc/Field/CMakeLists.txttest/unit/IO/Field/Field2D_CG_Triangle_pattern.txttest/unit/Field/XField2D_Curved_btest.cppsrc/Meshing/EGTess/EGTessModel.cppsrc/Field/FieldArea_CG_Cell_impl.hsrc/Meshing/EGTess/EGTessModel.hsrc/Field/Field_CG_Topology.htest/unit/Field/Field2D_EdgeLocal_Primal_CG_btest.cppsrc/Field/Field_CG_Topology.cppsrc/Field/XFieldArea_buildFrom_impl.h024e3a5a3e830753c39bc19f19ed7cdb68b56b281535340157000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdated 2D CG edge numbering 2018-08-26 23:22:37 -0400024e3a5a3e830753c39bc19f19ed7cdb68b56b28Updated 2D CG edge numberingaddsrc/Field/Element/UniqueElem.cppedittest/unit/IO/Field/Field2D_CG_Triangle_pattern.txteditsrc/Field/Field_CG_CellBase.heditDeveloperEmailAddresseseditsrc/Field/FieldArea_CG_Cell_impl.hedittest/unit/Discretization/DG/FunctionalBoundaryTrace_DGBR2_btest.cppedittest/unit/Field/XField2D_Curved_btest.cppeditsrc/Field/Field_CG_Topology.cppedittest/unit/Field/Field2D_EdgeLocal_PrimalNeighbors_CG_btest.cppedittest/unit/Field/Field2D_CG_Triangle_btest.cppedittest/unit/Field/XField2D_Local_Split_Part1_btest.cppeditsrc/Field/CMakeLists.txteditsrc/Field/Field_CG_Topology.heditsrc/Field/XFieldArea_buildFrom_impl.haddsrc/Field/Element/UniqueElem.heditsrc/Meshing/EGTess/EGTessModel.heditsrc/Meshing/EGTess/EGTessModel.cppedittest/unit/Field/Field2D_EdgeLocal_Primal_CG_btest.cppsrc/pde/NS/BCEulermitAVDiffusion2D.htest/sandbox/Solve2D_DGBR2_Quad_Euler_ForwardFacingStep_AV_BDF_toy.cpp8722e4163b6ecf680debf7fb4f605a3b06735d701535379392000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduAdded back working spacetime diffusion to euler in artificial viscosity 2018-08-27 10:16:32 -04008722e4163b6ecf680debf7fb4f605a3b06735d70Added back working spacetime diffusion to euler in artificial viscosityeditsrc/pde/NS/BCEulermitAVDiffusion2D.hedittest/sandbox/Solve2D_DGBR2_Quad_Euler_ForwardFacingStep_AV_BDF_toy.cpptest/sandbox/Solve1D_DGBR2_Line_Euler_ArtNozzle_AV_BDF_toy.cppsrc/pde/NS/BCEulermitAVDiffusion1D.htest/unit/pde/ArtificialViscosity/AVSensor_ViscousFlux1D_btest.cpptest/sandbox/Adapt2D_DGBR2_Euler_ArtificialViscosity_ST_toy.cpptest/system/CodeConsistency/PDEmitAVSensor1D_Consistency_btest.cppsrc/pde/NS/PDEEulermitAVDiffusion1D.htest/sandbox/Solve1D_DGBR2_Line_Euler_ArtNozzle_AV_ST_toy.cpptest/sandbox/Solve1D_DGBR2_Line_Euler_ArtNozzle_AV_Steady_toy.cpptest/sandbox/Adapt1D_DGBR2_Line_Euler_SSMENozzle_toy.cpptest/sandbox/Solve1D_DGBR2_Line_Euler_Sod_AV_ST_toy.cpptest/sandbox/Solve1D_DGBR2_Line_Euler_Nozzle_ArtificialViscosity_toy.cpptest/sandbox/Solve2D_DGBR2_Quad_Euler_ForwardFacingStep_AV_BDF_toy.cpptest/unit/pde/ArtificialViscosity/PDEmitAVSensor1D_btest.cpptest/unit/Discretization/DG/JacobianCell_DGBR2_Param_Euler1D_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block2x2_DGBR2_Line_Euler1DSensor_btest.cpptest/sandbox/Solve1D_DGBR2_Line_Euler_ShuOsher_AV_ST_toy.cpptest/system/CodeConsistency/PDEEulermitAVDiffusion1D_Consistency_btest.cppsrc/pde/NS/PDEEulermitAVDiffusion2D.htest/unit/pde/NS/BCEulermitAVDiffusion1D_btest.cpptest/sandbox/Solve1D_DGBR2_Line_Euler_Lax_AV_ST_toy.cpptest/unit/Discretization/DG/JacobianInteriorTrace_DGBR2_Param_Euler1D_btest.cpptest/unit/pde/ArtificialViscosity/AVSensor_Source1D_Euler_btest.cpptest/sandbox/Adapt2D_DGBR2_Euler_ArtNozzle_AV_ST_toy.cppsrc/pde/NS/PDEEuler1D_Source.htest/unit/pde/NS/PDEEulermitAVDiffusion1D_btest.cppd3dd70099ed8a52507a54a410db6a968c82b3d8d1535389257000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduUpdated 1D euler with optional spacetime diffusion 2018-08-27 13:00:57 -0400d3dd70099ed8a52507a54a410db6a968c82b3d8dUpdated 1D euler with optional spacetime diffusionedittest/system/CodeConsistency/PDEmitAVSensor1D_Consistency_btest.cppeditsrc/pde/NS/BCEulermitAVDiffusion1D.hedittest/sandbox/Solve1D_DGBR2_Line_Euler_Sod_AV_ST_toy.cppeditsrc/pde/NS/PDEEulermitAVDiffusion1D.hedittest/unit/pde/ArtificialViscosity/AVSensor_Source1D_Euler_btest.cppedittest/sandbox/Solve1D_DGBR2_Line_Euler_ArtNozzle_AV_Steady_toy.cppedittest/sandbox/Solve1D_DGBR2_Line_Euler_Lax_AV_ST_toy.cppedittest/sandbox/Solve2D_DGBR2_Quad_Euler_ForwardFacingStep_AV_BDF_toy.cppedittest/sandbox/Solve1D_DGBR2_Line_Euler_ArtNozzle_AV_BDF_toy.cppedittest/sandbox/Adapt2D_DGBR2_Euler_ArtNozzle_AV_ST_toy.cppedittest/sandbox/Solve1D_DGBR2_Line_Euler_ShuOsher_AV_ST_toy.cppedittest/unit/pde/ArtificialViscosity/AVSensor_ViscousFlux1D_btest.cppedittest/sandbox/Adapt2D_DGBR2_Euler_ArtificialViscosity_ST_toy.cppedittest/unit/pde/ArtificialViscosity/PDEmitAVSensor1D_btest.cppedittest/unit/Discretization/DG/JacobianInteriorTrace_DGBR2_Param_Euler1D_btest.cppeditsrc/pde/NS/PDEEuler1D_Source.hedittest/unit/Discretization/Block/AlgebraicEquationSet_Block2x2_DGBR2_Line_Euler1DSensor_btest.cppedittest/unit/pde/NS/BCEulermitAVDiffusion1D_btest.cppedittest/sandbox/Adapt1D_DGBR2_Line_Euler_SSMENozzle_toy.cppedittest/sandbox/Solve1D_DGBR2_Line_Euler_ArtNozzle_AV_ST_toy.cppedittest/system/CodeConsistency/PDEEulermitAVDiffusion1D_Consistency_btest.cppedittest/unit/Discretization/DG/JacobianCell_DGBR2_Param_Euler1D_btest.cppedittest/sandbox/Solve1D_DGBR2_Line_Euler_Nozzle_ArtificialViscosity_toy.cppedittest/unit/pde/NS/PDEEulermitAVDiffusion1D_btest.cppeditsrc/pde/NS/PDEEulermitAVDiffusion2D.hsrc/ErrorEstimate/DG/ErrorEstimate_DGAdvective.hc414ccf7fbf6c271de155ac21ef8b3b2217f15b91535392222000https://acdl.mit.edu/csi/user/ursachiursachiursachi@mit.eduChanged Galerkin tag to DGAdv 2018-08-27 13:50:22 -0400c414ccf7fbf6c271de155ac21ef8b3b2217f15b9Changed Galerkin tag to DGAdveditsrc/ErrorEstimate/DG/ErrorEstimate_DGAdvective.hsrc/pde/NS/PDEEulermitAVDiffusion2D.hsrc/pde/NS/PDEEulermitAVDiffusion1D.h15fe24d755de824e97b5b7dab342587db43602dc1535394785000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduAdded asserts to stop bad parameters using for spacetime 2018-08-27 14:33:05 -040015fe24d755de824e97b5b7dab342587db43602dcAdded asserts to stop bad parameters using for spacetimeeditsrc/pde/NS/PDEEulermitAVDiffusion1D.heditsrc/pde/NS/PDEEulermitAVDiffusion2D.hsrc/pde/NS/BCEuler2D_mitState.htest/unit/pde/ArtificialViscosity/AVSensor_ViscousFlux1D_btest.cppsrc/pde/NS/SolutionFunction_Euler2D.htest/unit/pde/NS/BCEuler2D_btest.cppe2a9d9da70adebd55c2164f15072c4927d4435e81535399783000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduFormatting errors 2018-08-27 15:56:23 -0400e2a9d9da70adebd55c2164f15072c4927d4435e8Formatting errorsedittest/unit/pde/NS/BCEuler2D_btest.cppedittest/unit/pde/ArtificialViscosity/AVSensor_ViscousFlux1D_btest.cppeditsrc/pde/NS/BCEuler2D_mitState.heditsrc/pde/NS/SolutionFunction_Euler2D.hsrc/Field/FieldVolume_CG_InteriorTrace_impl.hsrc/Field/Element/UniqueElem.hsrc/Field/Field_CG_CellConstructor.hsrc/Field/Field_CG_CellConstructor.cppsrc/Field/XField.hsrc/Field/FieldArea_CG_BoundaryTrace_impl.hsrc/Field/FieldArea_CG_InteriorTrace_impl.hsrc/Field/FieldVolume_CG_Trace_impl.hsrc/Field/FieldArea_CG_Trace_impl.hsrc/Field/FieldVolume_CG_Cell_impl.hsrc/Field/FieldLine_CG_Cell_impl.hsrc/Field/Element/UniqueElem.cppsrc/Field/Field_CG_TraceBase.hsrc/Field/Field_CG_CellBase.hsrc/Field/XFieldVolume_buildFrom_impl.hsrc/Field/FieldArea_CG_Cell_impl.hsrc/Field/Field_CG_Topology.hsrc/Field/FieldVolume_CG_BoundaryTrace_impl.hsrc/Field/Field_CG_Topology.cppsrc/Field/XFieldArea_buildFrom_impl.h468818ffae2801cb5939a4a6100a2216697450c41535413954000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduCompletely reworking CG field constructions 2018-08-27 19:52:34 -0400468818ffae2801cb5939a4a6100a2216697450c4Completely reworking CG field constructionseditsrc/Field/FieldVolume_CG_Cell_impl.heditsrc/Field/Field_CG_Topology.heditsrc/Field/FieldArea_CG_BoundaryTrace_impl.heditsrc/Field/Element/UniqueElem.haddsrc/Field/Field_CG_CellConstructor.heditsrc/Field/XFieldVolume_buildFrom_impl.heditsrc/Field/FieldVolume_CG_InteriorTrace_impl.heditsrc/Field/FieldArea_CG_Trace_impl.heditsrc/Field/Field_CG_Topology.cppeditsrc/Field/FieldVolume_CG_Trace_impl.heditsrc/Field/Field_CG_CellBase.heditsrc/Field/FieldArea_CG_Cell_impl.heditsrc/Field/XField.heditsrc/Field/FieldArea_CG_InteriorTrace_impl.heditsrc/Field/Element/UniqueElem.cppaddsrc/Field/Field_CG_CellConstructor.cppeditsrc/Field/FieldVolume_CG_BoundaryTrace_impl.heditsrc/Field/Field_CG_TraceBase.heditsrc/Field/FieldLine_CG_Cell_impl.heditsrc/Field/XFieldArea_buildFrom_impl.hsrc/Field/FieldVolume_CG_InteriorTrace_impl.hsrc/Field/Field_CG_CellConstructor.hsrc/Field/Field_CG_CellConstructor.cppsrc/Field/FieldArea_CG_BoundaryTrace_impl.hsrc/Field/FieldArea_CG_InteriorTrace_impl.hsrc/Field/Field_CG_TraceBase.hxxsrc/Field/FieldVolume_CG_Trace_impl.hsrc/Field/FieldArea_CG_Trace_impl.hsrc/Field/FieldVolume_CG_Cell_impl.hsrc/Field/Field_CG_CellBase.hxxsrc/Field/Field_CG_TraceBase.hsrc/Field/Field_CG_CellBase.hsrc/Field/XFieldVolume_buildFrom_impl.hsrc/Field/CMakeLists.txtsrc/Field/FieldArea_CG_Cell_impl.hsrc/Field/Field_CG_Topology.hsrc/Field/FieldVolume_CG_BoundaryTrace_impl.hsrc/Field/XFieldArea_buildFrom_impl.hsrc/Field/Field_CG_Topology.cpp4f5d795fe683d89d09dfd0e05658611716481d961535427717000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMore work on new CG Field creation 2018-08-27 23:41:57 -04004f5d795fe683d89d09dfd0e05658611716481d96More work on new CG Field creationeditsrc/Field/FieldArea_CG_Trace_impl.hdeletesrc/Field/Field_CG_TraceBase.heditsrc/Field/Field_CG_CellConstructor.heditsrc/Field/Field_CG_Topology.heditsrc/Field/FieldVolume_CG_BoundaryTrace_impl.heditsrc/Field/XFieldVolume_buildFrom_impl.hdeletesrc/Field/Field_CG_CellBase.heditsrc/Field/XFieldArea_buildFrom_impl.heditsrc/Field/FieldArea_CG_Cell_impl.heditsrc/Field/CMakeLists.txteditsrc/Field/FieldVolume_CG_Trace_impl.haddsrc/Field/Field_CG_TraceBase.hxxeditsrc/Field/FieldVolume_CG_InteriorTrace_impl.heditsrc/Field/FieldArea_CG_InteriorTrace_impl.haddsrc/Field/Field_CG_CellBase.hxxeditsrc/Field/Field_CG_CellConstructor.cppeditsrc/Field/FieldArea_CG_BoundaryTrace_impl.heditsrc/Field/FieldVolume_CG_Cell_impl.heditsrc/Field/Field_CG_Topology.cppsrc/pde/NS/BCEuler2D.ha918f50ffbc399a07469e94eb97c62685866795e1535471929000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduHopefully fixed intel error by extending boost::mpl::vector 2018-08-28 11:58:49 -0400a918f50ffbc399a07469e94eb97c62685866795eHopefully fixed intel error by extending boost::mpl::vectoreditsrc/pde/NS/BCEuler2D.hsrc/pde/IBL/PDEIBL2D_impl.hdf0770d16c0c58a1cb8368255cfc929d56ec32df1535491510000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduTried continuous nt but other variables discontinuous. Not quite fruitful yet. Might re-examine this in the future 2018-08-28 17:25:10 -0400df0770d16c0c58a1cb8368255cfc929d56ec32dfTried continuous nt but other variables discontinuous. Not quite fruitful yet. Might re-examine this in the futureeditsrc/pde/IBL/PDEIBL2D_impl.hsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_CutcellTransitionIBL.h697bb93e1b5531f9d0c687d8b1b544abbf7dea681535491572000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduDo not check HDG trace variable validity when those variables are Lagrange multipliers instead of primary IBL unknowns 2018-08-28 17:26:12 -0400697bb93e1b5531f9d0c687d8b1b544abbf7dea68Do not check HDG trace variable validity when those variables are Lagrange multipliers instead of primary IBL unknownseditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_CutcellTransitionIBL.hsrc/pde/IBL/PDEIBL2D.hsrc/pde/IBL/PDEIBL2D_impl.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBLnaturalTransition_ntcrit0p6500_turbulentWakexfoillag_naca0004_ne64_p1_Test_DGmatchHDG.txttest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBLnaturalTransition_ntcrit0p6500_turbulentWakexfoillag_naca0004_ne64_p1_Test_HDGcontinuous.txt5a9ad409c2c43126a264d274ea7973ab8233f2451535506893000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduCleaned up and only maintained two versions of cut-cell IBL: 1. HDG and DG whose solution are represented with DG fields; 2. HDG hacked so that all unknowns are continous across elements (essentially CG solution) 2018-08-28 21:41:33 -04005a9ad409c2c43126a264d274ea7973ab8233f245Cleaned up and only maintained two versions of cut-cell IBL: 1. HDG and DG whose solution are represented with DG fields; 2. HDG hacked so that all unknowns are continous across elements (essentially CG solution)editsrc/pde/IBL/PDEIBL2D.haddtest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBLnaturalTransition_ntcrit0p6500_turbulentWakexfoillag_naca0004_ne64_p1_Test_HDGcontinuous.txteditsrc/pde/IBL/PDEIBL2D_impl.haddtest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBLnaturalTransition_ntcrit0p6500_turbulentWakexfoillag_naca0004_ne64_p1_Test_DGmatchHDG.txtedittest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_p0_btest.cppb126d27aa9d510699114386b5874b99a228f3a571535506945000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduCommitted a p0 HDG test case. (This is not expected to work for HDG that is hacked to be CG) 2018-08-28 21:42:25 -0400b126d27aa9d510699114386b5874b99a228f3a57Committed a p0 HDG test case. (This is not expected to work for HDG that is hacked to be CG)addtest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_p0_btest.cpptest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBLnaturalTransition_ntcrit0p6500_turbulentWakexfoillag_naca0004_ne64_p1_Test_DGmatchHDG.txtbc21d13c7143a5ffde1f51a527f20daf6df9b8df1535510094000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduThe pyrite file in the last commit seems to be corrupted.. now updated 2018-08-28 22:34:54 -0400bc21d13c7143a5ffde1f51a527f20daf6df9b8dfThe pyrite file in the last commit seems to be corrupted.. now updatededittest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBLnaturalTransition_ntcrit0p6500_turbulentWakexfoillag_naca0004_ne64_p1_Test_DGmatchHDG.txtsrc/pde/NS/BCEulermitAVDiffusion2D.htest/unit/pde/NS/BCNavierStokes2D_btest.cppsrc/pde/NS/TraitsNavierStokesArtificialViscosity.htest/unit/IO/pde/NS/BCNavierStokes2D_pattern.txtsrc/pde/NS/OutputNavierStokes2D.hsrc/pde/NS/BCNavierStokes2D.hsrc/pde/NS/PDEEulermitAVDiffusion2D.htest/unit/pde/NS/OutputNavierStokes2D_btest.cppsrc/pde/NS/BCNavierStokes2D.cppc7364e12515c6c6b56eac9e28c04e7298fed42001535547547000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduNavierStokes2D with artificial viscosity 2018-08-29 08:59:07 -0400c7364e12515c6c6b56eac9e28c04e7298fed4200NavierStokes2D with artificial viscosityaddsrc/pde/NS/OutputNavierStokes2D.heditsrc/pde/NS/BCNavierStokes2D.cppaddsrc/pde/NS/TraitsNavierStokesArtificialViscosity.heditsrc/pde/NS/BCNavierStokes2D.hedittest/unit/pde/NS/BCNavierStokes2D_btest.cppeditsrc/pde/NS/PDEEulermitAVDiffusion2D.heditsrc/pde/NS/BCEulermitAVDiffusion2D.hedittest/unit/IO/pde/NS/BCNavierStokes2D_pattern.txtaddtest/unit/pde/NS/OutputNavierStokes2D_btest.cppsrc/pde/NS/OutputNavierStokes2D.h4f506e572739446da8f1fce9d465a3f33cd8e68c1535547934000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduFormatting issues 2018-08-29 09:05:34 -04004f506e572739446da8f1fce9d465a3f33cd8e68cFormatting issueseditsrc/pde/NS/OutputNavierStokes2D.hsrc/pde/NS/GasModel.hsrc/pde/NS/CMakeLists.txtsrc/pde/NS/NavierStokesArtificialViscosity2D.cppsrc/pde/NS/BCNavierStokes2D.hsrc/pde/NS/PDEEulermitAVDiffusion2D.hsrc/pde/NS/BCEulermitAVDiffusion2D.cppsrc/pde/NS/BCNavierStokes2D.cppb9eaabe7fcad001120708d33815191064833dd811535558077000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduMissed a few files 2018-08-29 11:54:37 -0400b9eaabe7fcad001120708d33815191064833dd81Missed a few filesaddsrc/pde/NS/NavierStokesArtificialViscosity2D.cppeditsrc/pde/NS/BCNavierStokes2D.heditsrc/pde/NS/GasModel.heditsrc/pde/NS/CMakeLists.txteditsrc/pde/NS/PDEEulermitAVDiffusion2D.heditsrc/pde/NS/BCEulermitAVDiffusion2D.cppeditsrc/pde/NS/BCNavierStokes2D.cppsrc/pde/NS/BCEulermitAVDiffusion2D.cpp85f733742dc1ad504e059b9cd20a092ff861dadf1535559184000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduFormatting fix 2018-08-29 12:13:04 -040085f733742dc1ad504e059b9cd20a092ff861dadfFormatting fixeditsrc/pde/NS/BCEulermitAVDiffusion2D.cppsrc/pde/NS/BCEulermitAVDiffusion2D.cppe6ebbc5f349fe1b474b3e4f9529a899d5a90e7e11535559940000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduFormatting fix 2018-08-29 12:25:40 -0400e6ebbc5f349fe1b474b3e4f9529a899d5a90e7e1Formatting fixeditsrc/pde/NS/BCEulermitAVDiffusion2D.cppsrc/pde/NS/BCEulermitAVDiffusion2D.cpp624e1f4e80b49b45e66250088c549689a7df62381535560567000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduFormatting fix 2018-08-29 12:36:07 -0400624e1f4e80b49b45e66250088c549689a7df6238Formatting fixeditsrc/pde/NS/BCEulermitAVDiffusion2D.cppsrc/NonLinearSolver/LineUpdate/HalvingSearchLineUpdate_impl.h84df587da4f2fd66cd3959a5b051caa98f079e5a1535563451000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed residual dump to be what is described in the paramter dictionary 2018-08-29 13:24:11 -040084df587da4f2fd66cd3959a5b051caa98f079e5aFixed residual dump to be what is described in the paramter dictionaryeditsrc/NonLinearSolver/LineUpdate/HalvingSearchLineUpdate_impl.htest/system/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_NACA0004_LamiBL_btest.cpptest/system/IO/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_naca0004_ne64_p1_airfoil_Test_HDGcontinuous.txte73d53c1c28a3206ad37293af32db2c62410d8201535569430000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded pyrite file for uncoupled IBL 2018-08-29 15:03:50 -0400e73d53c1c28a3206ad37293af32db2c62410d820Added pyrite file for uncoupled IBLedittest/system/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_NACA0004_LamiBL_btest.cppaddtest/system/IO/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_naca0004_ne64_p1_airfoil_Test_HDGcontinuous.txttest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpp8bb8684adde0e43a5e9dd1741483df4a4b754e5c1535637388000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduVerified pyrite tests & playing with test cases 2018-08-30 09:56:28 -04008bb8684adde0e43a5e9dd1741483df4a4b754e5cVerified pyrite tests & playing with test casesedittest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppsrc/Field/FieldVolume_CG_InteriorTrace_impl.htest/system/Asymptotic/Adjoint2D_HDG_Triangle_AD_sansLG_btest.cppsrc/Field/FieldArea_CG_BoundaryTrace_impl.hsrc/Adaptation/MOESS/ErrorModel.cpptest/unit/Field/XField3D_Curved_Hex_btest.cppsrc/Field/FieldArea_CG_BoundaryTrace_Instantiate_2D.cpptest/sandbox/Adjoint1D_DGAdvective_AD_ST_toy.cpptest/system/Asymptotic/ErrorOrder_2D_DGAdvective_Annulus_Quad_btest.cppsrc/BasisFunction/TraceToCellRefCoord.htest/sandbox/ErrorOrder_1D_DGBR2_NonLinPoisson_toy.cpptest/system/LocalSolve/LocalSolve1D_Split_DGBR2_AD_btest.cpptest/system/Asymptotic/ErrorOrder_2D_DGAdvective_Annulus_Triangle_btest.cppsrc/Topology/ElementTopology.hsrc/Field/CMakeLists.txttest/sandbox/Solve1D_DGAdvective_BuckleyLeverett_ST_toy.cppsrc/Field/Field_CG_Topology.hsrc/Field/XFieldArea_buildFrom_impl.hsrc/Discretization/Galerkin/SolutionData_Galerkin_Stabilized.hsrc/Field/FieldLine_CG_BoundaryTrace_impl.htest/unit/Field/Field3D_HDG_btest.cppsrc/Discretization/DG/SolutionData_DGAdvective.htest/unit/Discretization/HDG/isValidStateInteriorTrace_HDG_Euler_btest.cppsrc/Field/FieldArea_CG_BoundaryTrace_Instantiate_3D.cpptest/system/Asymptotic/ErrorEstimateOrder_1D_HDG_Line_AD_btest_LGOFF.cppsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.hsrc/Field/FieldLine_CG_BoundaryTrace_Instantiate_1D.cppsrc/Field/FieldLine_CG_Cell_impl.htest/system/Asymptotic/ErrorOrder_1D_DGBR2_AD_btest.cpptest/unit/Field/Field2D_CG_Quad_btest.cpptest/system/Asymptotic/ErrorOrder_1D_DGBR2_Burgers_btest.cpptest/sandbox/Solve1D_EDG_Line_Euler_Sod_ST_toy.cppsrc/Adaptation/MOESS/MOESS.cppsrc/Field/HField/GenHField_CG.cpptest/unit/IO/Field/Field2D_CG_Triangle_pattern.txttest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cpptest/sandbox/Solve1D_HDG_Burgers_toy_LGOFF.cppsrc/Field/FieldAssociativityConstructor.htest/system/Asymptotic/ErrorOrder_2D_DGAdvective_Flat_Line_AD_btest.cpptest/sandbox/Solve1D_DGAdvective_AD_ST_toy.cppsrc/Field/Field_CG_CellConstructor.hsrc/Field/Partition/XField_Lagrange.cpptest/system/LocalSolve/ElementLocalSolve3D_DGBR2_Tet_AD_btest.cpptest/unit/Discretization/Galerkin/ResidualCell_Galerkin_AD_btest.cppsrc/Field/FieldVolume_CG_Trace_impl.htest/system/Asymptotic/ErrorEstimateOrder_1D_DGBR2_Line_AD_btest.cppsrc/Field/FieldArea_CG_Trace_impl.hsrc/Field/FieldVolume_CG_Cell_impl.htest/system/Asymptotic/Adjoint2D_HDG_Triangle_AD_mitState_btest.cppsrc/Field/Field_impl.htest/system/Asymptotic/ErrorOrder_3D_DGBR2_Sphere_Triangle_AD_btest.cpptest/sandbox/Solve1D_HDG_Burgers_DBC_toy_LGOFF.cpptest/unit/IO/Field/Field1D_CG_pattern.txttest/system/Asymptotic/AWErrorEst_2D_HDG_Triangle_AD_btest_LGOFF.cppsrc/Field/Element/ElementAssociativityLineConstructor.cpptest/unit/Discretization/DG/JacobianTranspose_DGBR2_Triangle_AD_btest.cpptest/unit/IO/Field/Field2D_CG_Quad_pattern.txtsrc/Field/Element/UniqueElem.hsrc/Field/Field_CG_TraceConstructor.htest/unit/Field/Field3D_CG_Tetrahedron_btest.cppsrc/Meshing/EPIC/XField_PX.cppsrc/Field/FieldLine_CG_BoundaryTrace_Instantiate_2D.cppsrc/Field/XField_impl.htest/unit/Discretization/DG/Adjoint_LiftingOperator_DGBR2_Triangle_AD_btest.cppsrc/Field/XFieldArea_Local_Split_Linear.cppsrc/Field/XFieldLine_buildFrom_impl.htest/system/Asymptotic/ErrorOrder_3D_DGBR2_Tet_AD_btest.cppsrc/Discretization/HDG/Field_HDG.hsrc/Field/FieldLine_CG_Cell.hsrc/Field/FieldVolume_CG_BoundaryTrace_impl.htest/sandbox/Adjoint1D_DGAdvective_BuckleyLeverett_ST_toy.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeIBL3eqmClosure_btest.cppsrc/Field/Field_CG_Topology.cppsrc/Field/FieldArea_CG_BoundaryTrace.hsrc/MPI/continuousElementMap.hsrc/Field/Element/ElementAssociativityLineConstructor.htest/system/Asymptotic/Solve2D_DGAdvective_LinearRobin_mitLG_sansLG_Consistency_AD_btest.cpptest/unit/Field/FieldSequence_btest.cppsrc/Field/Field.htest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cppsrc/Adaptation/MOESS/CostModel_LogEuclidean.htest/unit/Discretization/HDG/AuxiliaryAdjoint_HDG_AD_btest.cppsrc/Discretization/HDG/Instantiate/AlgebraicEquationSet_HDG_Euler2D_PrimitiveRhoPressure.cppsrc/Field/Field_CG_CellBase.hxxtest/unit/Field/Field2D_HDG_btest.cpptest/system/Asymptotic/AWErrorEst_1D_HDG_Line_AD_btest_LGOFF.cpptest/unit/Field/XField3D_Curved_Tet_btest.cppsrc/Adaptation/MOESS/CostModel_LogEuclidean.cpptest/system/Asymptotic/ErrorOrder_2D_DGBR2_Triangle_AD_btest.cppsrc/Meshing/EPIC/WriteMeshMetric_Epic.cppsrc/Field/FieldLine_CG_BoundaryTrace.hsrc/BasisFunction/TraceToCellRefCoord_Tetrahedron.cppsrc/Field/FieldArea_CG_InteriorTrace_impl.htest/sandbox/Solve2D_HDG_Triangle_AD_STtrick_toy_LGOFF.cpptest/sandbox/Solve1D_HDG_Line_Euler_Sod_ST_toy.cpptest/unit/Discretization/Galerkin/UpdateFraction_Euler_btest.cpptest/sandbox/Solve2D_DGAdvective_AdvectionOnly_Circle_toy.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cpptest/sandbox/Solve2D_DGBR2_LinearRobin_mitLG_sansLG_Consistency_AD_toy.cpptest/system/Asymptotic/Adjoint2D_DGAdvective_Triangle_AD_btest.cpptest/system/Asymptotic/ErrorOrder_2D_HDG_Triangle_AD_btest.cppsrc/Field/Field_DG_CellBase_impl.htest/unit/Field/XField2D_Curved_btest.cpptest/system/Asymptotic/ErrorOrder_1D_HDG_AD_btest.cpptest/sandbox/Solve1D_HDG_AD_HB_toy_LGOFF.cppsrc/tools/split_cat_std_vector.htest/system/Asymptotic/Adjoint2D_DGBR2_Triangle_AD_btest.cpptest/unit/Field/Field2D_CG_Triangle_btest.cpptest/system/Asymptotic/ErrorOrder_2D_EDG_Triangle_AD_btest.cpptest/sandbox/Solve1D_HDG_AD_ST_toy_LGOFF.cpptest/unit/Discretization/Galerkin/isValidStateCell_Euler_btest.cppsrc/Discretization/HDG/AlgebraicEquationSet_HDG.htest/unit/Field/Field3D_CG_Hexahedron_btest.cppsrc/Field/XFieldVolume_Local_Split_Linear_Isotropic.cppsrc/Field/XFieldVolume_Local_Split_Linear_Edge.cpptest/unit/Meshing/EPIC/XField_PX_btest.cppsrc/Field/XFieldVolume_buildFrom_impl.htest/unit/Adaptation/MOESS/CostModel_LogEuclidian_btest.cpptest/system/Asymptotic/ErrorOrder_1D_DGBR2_AD_BDF_btest.cppsrc/Field/FieldArea_CG_Cell_impl.htest/unit/Field/Field2D_DG_Quad_btest.cppsrc/Field/Field_CG_TraceConstructor.cppsrc/Field/Field_CG_CellConstructor.cpptest/unit/Field/Field1D_CG_btest.cpptest/system/Asymptotic/ErrorOrder_3D_DGBR2_Periodic_Hex_AD_btest.cppsrc/Field/Field_CG_TraceBase.hxxtest/sandbox/Solve2D_DGBR2_Triangle_AD_LocalRefine_toy.cpptest/system/LocalSolve/LocalSolve1D_DGBR2_AD_btest.cpptest/system/Asymptotic/ErrorOrder_1D_HDG_Burgers_btest.cppsrc/Discretization/DG/SolutionData_DGBR2.htest/unit/Field/Field2D_DG_Triangle_btest.cppsrc/BasisFunction/TraceToCellRefCoord_Hexahedron.cppsrc/Field/Element/UniqueElem.cpptest/system/Asymptotic/ErrorOrder_1D_DGBR2_TwoPhase_ST_btest.cpptest/system/AnalyticSolve/AnalyticSolve_HDG_AD_btest.cpptest/unit/Field/GenHField_CG_btest.cpptest/unit/Discretization/DG/Adjoint_LiftingOperator_DGBR2_Triangle_NS_btest.cpp2867ea8ccd8ec62ac2b035139d1f2d111f9008371535675050000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduComplete rework of CG field construction. Works in parallel now. Removed zero initialization from fields. 2018-08-30 20:24:10 -04002867ea8ccd8ec62ac2b035139d1f2d111f900837Complete rework of CG field construction. Works in parallel now. Removed zero initialization from fields.edittest/unit/IO/Field/Field2D_CG_Quad_pattern.txtedittest/system/Asymptotic/ErrorOrder_2D_DGAdvective_Annulus_Triangle_btest.cppedittest/unit/Discretization/Galerkin/UpdateFraction_Euler_btest.cppedittest/system/Asymptotic/ErrorOrder_2D_HDG_Triangle_AD_btest.cppedittest/unit/Field/Field2D_CG_Quad_btest.cppedittest/unit/Field/XField3D_Curved_Tet_btest.cppedittest/sandbox/Adjoint1D_DGAdvective_BuckleyLeverett_ST_toy.cppedittest/sandbox/Adjoint1D_DGAdvective_AD_ST_toy.cppeditsrc/Field/Element/ElementAssociativityLineConstructor.heditsrc/Field/Field_CG_CellConstructor.cppedittest/system/Asymptotic/ErrorOrder_2D_EDG_Triangle_AD_btest.cppedittest/unit/IO/Field/Field2D_CG_Triangle_pattern.txtedittest/unit/Meshing/EPIC/XField_PX_btest.cppeditsrc/Discretization/HDG/Instantiate/AlgebraicEquationSet_HDG_Euler2D_PrimitiveRhoPressure.cppedittest/sandbox/Solve2D_DGBR2_Triangle_AD_LocalRefine_toy.cppedittest/system/Asymptotic/ErrorOrder_1D_DGBR2_Burgers_btest.cppaddsrc/Field/FieldLine_CG_BoundaryTrace_Instantiate_2D.cppeditsrc/Field/XFieldArea_buildFrom_impl.heditsrc/Field/FieldVolume_CG_InteriorTrace_impl.hedittest/sandbox/Solve1D_HDG_AD_HB_toy_LGOFF.cppedittest/system/Asymptotic/ErrorOrder_3D_DGBR2_Sphere_Triangle_AD_btest.cppedittest/unit/Field/Field1D_CG_btest.cppedittest/sandbox/Solve2D_DGAdvective_AdvectionOnly_Circle_toy.cppedittest/system/Asymptotic/Solve2D_DGAdvective_LinearRobin_mitLG_sansLG_Consistency_AD_btest.cppedittest/system/LocalSolve/ElementLocalSolve3D_DGBR2_Tet_AD_btest.cppeditsrc/Adaptation/MOESS/ErrorModel.cppedittest/system/Asymptotic/ErrorOrder_1D_HDG_Burgers_btest.cppedittest/unit/Field/Field3D_HDG_btest.cppeditsrc/Discretization/DG/SolutionData_DGBR2.heditsrc/Field/FieldVolume_CG_Trace_impl.heditsrc/Field/Field_DG_CellBase_impl.hedittest/system/Asymptotic/ErrorOrder_2D_DGBR2_Triangle_AD_btest.cppeditsrc/Field/FieldAssociativityConstructor.hedittest/sandbox/Solve1D_HDG_AD_ST_toy_LGOFF.cppdeletesrc/Discretization/HDG/Field_HDG.hedittest/sandbox/Solve1D_EDG_Line_Euler_Sod_ST_toy.cppedittest/unit/Field/XField3D_Curved_Hex_btest.cppedittest/system/Asymptotic/AWErrorEst_2D_HDG_Triangle_AD_btest_LGOFF.cppedittest/system/Asymptotic/Adjoint2D_DGBR2_Triangle_AD_btest.cppedittest/system/AnalyticSolve/AnalyticSolve_HDG_AD_btest.cppeditsrc/Field/FieldArea_CG_Trace_impl.hedittest/unit/Field/XField2D_Curved_btest.cppedittest/system/Asymptotic/Adjoint2D_HDG_Triangle_AD_mitState_btest.cppedittest/system/Asymptotic/ErrorOrder_2D_DGAdvective_Flat_Line_AD_btest.cppedittest/sandbox/ErrorOrder_1D_DGBR2_NonLinPoisson_toy.cppeditsrc/Field/XFieldVolume_Local_Split_Linear_Isotropic.cppedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppedittest/system/Asymptotic/AWErrorEst_1D_HDG_Line_AD_btest_LGOFF.cppedittest/system/LocalSolve/LocalSolve1D_DGBR2_AD_btest.cppeditsrc/Adaptation/MOESS/MOESS.cppeditsrc/BasisFunction/TraceToCellRefCoord_Hexahedron.cppedittest/unit/Discretization/DG/Adjoint_LiftingOperator_DGBR2_Triangle_NS_btest.cppaddsrc/Field/Field_CG_TraceConstructor.cppeditsrc/Field/FieldLine_CG_BoundaryTrace.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cppeditsrc/Meshing/EPIC/XField_PX.cppedittest/sandbox/Solve1D_DGAdvective_AD_ST_toy.cppeditsrc/Meshing/EPIC/WriteMeshMetric_Epic.cppaddsrc/Field/FieldLine_CG_BoundaryTrace_impl.hedittest/system/Asymptotic/ErrorEstimateOrder_1D_DGBR2_Line_AD_btest.cppaddsrc/Field/Field_CG_TraceConstructor.hedittest/system/Asymptotic/ErrorEstimateOrder_1D_HDG_Line_AD_btest_LGOFF.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeIBL3eqmClosure_btest.cppeditsrc/Field/Field_CG_Topology.cppeditsrc/Field/HField/GenHField_CG.cppeditsrc/BasisFunction/TraceToCellRefCoord_Tetrahedron.cppeditsrc/Field/XFieldArea_Local_Split_Linear.cppeditsrc/Field/XFieldLine_buildFrom_impl.hedittest/sandbox/Solve1D_HDG_Burgers_toy_LGOFF.cppedittest/system/Asymptotic/ErrorOrder_1D_HDG_AD_btest.cppeditsrc/Adaptation/MOESS/CostModel_LogEuclidean.cppeditsrc/Field/FieldArea_CG_BoundaryTrace_Instantiate_3D.cppedittest/unit/Field/FieldSequence_btest.cppeditsrc/Field/CMakeLists.txteditsrc/Topology/ElementTopology.heditsrc/Field/FieldArea_CG_InteriorTrace_impl.heditsrc/Field/FieldLine_CG_Cell_impl.heditsrc/Field/FieldArea_CG_BoundaryTrace.heditsrc/Field/Field_CG_Topology.hedittest/system/Asymptotic/Adjoint2D_HDG_Triangle_AD_sansLG_btest.cppedittest/system/LocalSolve/LocalSolve1D_Split_DGBR2_AD_btest.cppeditsrc/Discretization/HDG/AlgebraicEquationSet_HDG.heditsrc/Field/FieldLine_CG_Cell.hedittest/unit/IO/Field/Field1D_CG_pattern.txteditsrc/Field/Element/ElementAssociativityLineConstructor.cppeditsrc/BasisFunction/TraceToCellRefCoord.hedittest/unit/Discretization/Galerkin/ResidualCell_Galerkin_AD_btest.cppedittest/unit/Discretization/DG/JacobianTranspose_DGBR2_Triangle_AD_btest.cppeditsrc/Field/FieldArea_CG_BoundaryTrace_Instantiate_2D.cppeditsrc/Field/Partition/XField_Lagrange.cppeditsrc/Adaptation/MOESS/CostModel_LogEuclidean.hedittest/system/Asymptotic/ErrorOrder_1D_DGBR2_AD_BDF_btest.cppedittest/unit/Discretization/DG/Adjoint_LiftingOperator_DGBR2_Triangle_AD_btest.cppeditsrc/Field/Element/UniqueElem.cppeditsrc/Field/XFieldVolume_buildFrom_impl.heditsrc/Field/Element/UniqueElem.hedittest/system/Asymptotic/Adjoint2D_DGAdvective_Triangle_AD_btest.cppeditsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.heditsrc/Field/XField_impl.hedittest/system/Asymptotic/ErrorOrder_1D_DGBR2_TwoPhase_ST_btest.cppedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cppedittest/unit/Adaptation/MOESS/CostModel_LogEuclidian_btest.cppedittest/unit/Discretization/HDG/AuxiliaryAdjoint_HDG_AD_btest.cppedittest/unit/Field/Field2D_DG_Quad_btest.cppedittest/sandbox/Solve1D_HDG_Line_Euler_Sod_ST_toy.cppedittest/sandbox/Solve2D_HDG_Triangle_AD_STtrick_toy_LGOFF.cppedittest/unit/Discretization/Galerkin/isValidStateCell_Euler_btest.cppedittest/unit/Discretization/HDG/isValidStateInteriorTrace_HDG_Euler_btest.cppedittest/unit/Field/Field2D_DG_Triangle_btest.cppedittest/sandbox/Solve2D_DGBR2_LinearRobin_mitLG_sansLG_Consistency_AD_toy.cppeditsrc/Field/Field_impl.hedittest/sandbox/Solve1D_HDG_Burgers_DBC_toy_LGOFF.cppedittest/sandbox/Solve1D_DGAdvective_BuckleyLeverett_ST_toy.cppeditsrc/Field/FieldArea_CG_Cell_impl.heditsrc/Field/Field_CG_CellConstructor.heditsrc/Field/FieldArea_CG_BoundaryTrace_impl.haddsrc/Field/FieldLine_CG_BoundaryTrace_Instantiate_1D.cppeditsrc/Field/Field.hedittest/unit/Field/GenHField_CG_btest.cppedittest/unit/Field/Field3D_CG_Hexahedron_btest.cppeditsrc/tools/split_cat_std_vector.heditsrc/Discretization/DG/SolutionData_DGAdvective.hedittest/system/Asymptotic/ErrorOrder_3D_DGBR2_Periodic_Hex_AD_btest.cppedittest/system/Asymptotic/ErrorOrder_3D_DGBR2_Tet_AD_btest.cppeditsrc/Field/XFieldVolume_Local_Split_Linear_Edge.cppeditsrc/Discretization/Galerkin/SolutionData_Galerkin_Stabilized.heditsrc/Field/FieldVolume_CG_Cell_impl.hedittest/system/Asymptotic/ErrorOrder_1D_DGBR2_AD_btest.cppedittest/system/Asymptotic/ErrorOrder_2D_DGAdvective_Annulus_Quad_btest.cppeditsrc/Field/FieldVolume_CG_BoundaryTrace_impl.hdeletesrc/Field/Field_CG_CellBase.hxxedittest/unit/Field/Field2D_CG_Triangle_btest.cppdeletesrc/Field/Field_CG_TraceBase.hxxeditsrc/MPI/continuousElementMap.hedittest/unit/Field/Field2D_HDG_btest.cppedittest/unit/Field/Field3D_CG_Tetrahedron_btest.cppsrc/Field/Field_CG_TraceConstructor.cppsrc/Field/Field_CG_CellConstructor.cppsrc/Field/Element/UniqueElem.hsrc/Field/Element/UniqueElem.cppsrc/UserInterfaces/PythonUI/PySANS_NS_NACA0012.cpptest/unit/Field/XField3D_Curved_Tet_btest.cpptest/unit/Field/XField3D_Curved_Hex_btest.cppa7a702a7b8543254c4077f48e355321ebdb5cefc1535682822000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed some warnings and compile errors 2018-08-30 22:33:42 -0400a7a702a7b8543254c4077f48e355321ebdb5cefcFixed some warnings and compile errorseditsrc/Field/Element/UniqueElem.cppedittest/unit/Field/XField3D_Curved_Tet_btest.cppeditsrc/Field/Field_CG_CellConstructor.cppeditsrc/Field/Element/UniqueElem.heditsrc/UserInterfaces/PythonUI/PySANS_NS_NACA0012.cppedittest/unit/Field/XField3D_Curved_Hex_btest.cppeditsrc/Field/Field_CG_TraceConstructor.cppsrc/Field/Field_CG_Topology.cppdce305fe718a5729c02d60903507bf661754c49a1535684933000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMissing include 2018-08-30 23:08:53 -0400dce305fe718a5729c02d60903507bf661754c49aMissing includeeditsrc/Field/Field_CG_Topology.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeIBL3eqmClosure_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppe855fc938f5614d82aa555b20fc5513a2544b64f1535712953000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMore field initializations 2018-08-31 06:55:53 -0400e855fc938f5614d82aa555b20fc5513a2544b64fMore field initializationsedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeIBL3eqmClosure_btest.cppsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.h8375a291eb7c1a90c62a4125a163cac2840ca3861535713467000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduSlight efficiency improvement for HDG adjoint calculation 2018-08-31 07:04:27 -04008375a291eb7c1a90c62a4125a163cac2840ca386Slight efficiency improvement for HDG adjoint calculationeditsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.htest/unit/Discretization/Galerkin/UpdateFraction_Euler_btest.cpp563e234908f04e6d9b33019a94fbf35669c102881535725637000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed another uninitialized field 2018-08-31 10:27:17 -0400563e234908f04e6d9b33019a94fbf35669c10288Fixed another uninitialized fieldedittest/unit/Discretization/Galerkin/UpdateFraction_Euler_btest.cppsrc/pde/IBL/PDEIBLUniField.h53c8ddf742b3930f4285c6ba9dd0c6068c5bcedd1535736495000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduMinor edits 2018-08-31 13:28:15 -040053c8ddf742b3930f4285c6ba9dd0c6068c5bceddMinor editseditsrc/pde/IBL/PDEIBLUniField.htest/unit/Discretization/DG/AlgebraicEquationSet_DGBR2_Triangle_AD_btest.cpptest/unit/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Triangle_AD_btest.cppsrc/Field/Element/ElementAssociativityLineConstructor.hsrc/Adaptation/MOESS/ErrorModel.cpptest/unit/Discretization/DG/AlgebraicEquationSet_DGBR2_BuckleyLeverett_ST_btest.cppsrc/Field/FieldVolume_CG_BoundaryTrace.hsrc/Discretization/Galerkin/JacobianCell_Galerkin_BDF.htest/sandbox/Solve3D_CG_NACA_LIP_Darmofal_toy.cpptest/sandbox/ErrorOrder_1D_CGStab_AD_toy.cppsrc/Discretization/Galerkin/FunctionalBoundaryTrace_Galerkin.htest/unit/Discretization/DG/AlgebraicEquationSet_DGAdvective_Triangle_AD_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBL_Panel_btest.cpptest/sandbox/Solve3D_CG_NACA_LIP_toy.cpptest/unit/Discretization/DG/CMakeLists.txttest/sandbox/Solve3D_CG_NACA_LIP_Drela_toy.cppsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized.htest/unit/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_BuckleyLeverett_ST_btest.cpptest/sandbox/Solve3D_CG_LIP_KuttaHACK_toy.cppsrc/pde/AdvectionDiffusion/ViscousFlux3D.hsrc/Field/Field_DG_CellBase_impl.hsrc/Discretization/Galerkin/JacobianCell_Galerkin_HB.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin.hsrc/Adaptation/MOESS/SolverInterface.hsrc/Discretization/Galerkin/JacobianCell_Galerkin.htest/unit/Discretization/Galerkin/CMakeLists.txtsrc/Field/Field_CG_CellConstructor.hsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion3D.htest/unit/Discretization/Galerkin/JacobianFunctionalBoundaryTrace_Galerkin_HSM2D_btest.cpptest/system/LocalSolve/ElementLocalSolve3D_DGBR2_Tet_AD_btest.cpptest/sandbox/Solve3D_CG_NACA_FP_Drela_toy.cppsrc/Field/Element/ElementAssociativityNodeConstructor.cpptest/unit/Field/XField1D_Curved_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBL_Panel_btest.cppsrc/Discretization/Galerkin/JacobianBoundaryTrace_Galerkin.htest/sandbox/Solve2D_CGStabilized_Triangle_Euler_GaussianBump_toy.cpptest/sandbox/Solve3D_CG_NACA_LIP2_toy.cppsrc/Field/Field_DG_BoundaryTraceBase_impl.htest/unit/ErrorEstimate/ErrorEstimateBoundaryTrace_Galerkin_AD_btest.cppsrc/UserInterfaces/LIPSolver.cpptest/unit/Field/Field3D_Local_Split_DG_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/unit/Discretization/HDG/AlgebraicEquationSet_HDG_BuckleyLeverett_ST_btest.cppsrc/Discretization/FV_TPFA/AlgebraicEquationSet_FV_TPFA.htest/unit/Discretization/DG/AlgebraicEquationSet_DGAdvective_BuckleyLeverett_ST_btest.cppsrc/Discretization/DG/AlgebraicEquationSet_TransitionIBL.hsrc/Field/Field_DG_InteriorTraceBase_impl.htest/unit/Discretization/Galerkin/FunctionalCell_Galerkin_btest.cpptest/system/LocalSolve/ElementLocalSolve3D_DGAdvective_Tet_AD_btest.cpptest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_FlatPlate_toy.cpptest/unit/Field/Field2D_Local_Split_DG_btest.cppsrc/Field/Element/ElementAssociativityNodeConstructor.hsrc/Field/XFieldLine_buildFrom_impl.hsrc/Field/FieldVolume_CG_BoundaryTrace_impl.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpp58392daeb49a2af4ab5a101a355b7fc8129e5e711535756305000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduCG works in parallel! 2018-08-31 18:58:25 -040058392daeb49a2af4ab5a101a355b7fc8129e5e71CG works in parallel!editsrc/Field/FieldVolume_CG_BoundaryTrace.hedittest/unit/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_BuckleyLeverett_ST_btest.cppeditsrc/Discretization/Galerkin/JacobianBoundaryTrace_Galerkin.heditsrc/Field/Field_DG_InteriorTraceBase_impl.hedittest/unit/Discretization/DG/AlgebraicEquationSet_DGAdvective_Triangle_AD_btest.cppedittest/unit/Discretization/Galerkin/FunctionalCell_Galerkin_btest.cppeditsrc/Discretization/Galerkin/JacobianCell_Galerkin_BDF.hedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBL_Panel_btest.cppeditsrc/Field/FieldVolume_CG_BoundaryTrace_impl.hedittest/unit/Discretization/Galerkin/CMakeLists.txteditsrc/pde/AdvectionDiffusion/ViscousFlux3D.hedittest/sandbox/Solve2D_CGStabilized_Triangle_Euler_GaussianBump_toy.cppedittest/unit/Discretization/DG/AlgebraicEquationSet_DGAdvective_BuckleyLeverett_ST_btest.cppedittest/sandbox/Solve3D_CG_NACA_LIP_Darmofal_toy.cppedittest/unit/Discretization/HDG/AlgebraicEquationSet_HDG_BuckleyLeverett_ST_btest.cppedittest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_FlatPlate_toy.cppedittest/unit/Discretization/Galerkin/JacobianFunctionalBoundaryTrace_Galerkin_HSM2D_btest.cppedittest/unit/Field/XField1D_Curved_btest.cppedittest/sandbox/Solve3D_CG_NACA_LIP_toy.cppeditsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion3D.heditsrc/Adaptation/MOESS/SolverInterface.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppeditsrc/Field/Field_DG_CellBase_impl.hedittest/sandbox/Solve3D_CG_NACA_LIP_Drela_toy.cppeditsrc/Field/Field_DG_BoundaryTraceBase_impl.hedittest/unit/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Triangle_AD_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBL_Panel_btest.cppeditsrc/Discretization/Galerkin/JacobianCell_Galerkin.heditsrc/Field/Element/ElementAssociativityLineConstructor.hedittest/sandbox/ErrorOrder_1D_CGStab_AD_toy.cppedittest/unit/ErrorEstimate/ErrorEstimateBoundaryTrace_Galerkin_AD_btest.cppeditsrc/Field/Element/ElementAssociativityNodeConstructor.hedittest/sandbox/Solve3D_CG_NACA_FP_Drela_toy.cppeditsrc/Adaptation/MOESS/ErrorModel.cppeditsrc/Field/XFieldLine_buildFrom_impl.hedittest/unit/Discretization/DG/AlgebraicEquationSet_DGBR2_Triangle_AD_btest.cppedittest/sandbox/Solve3D_CG_LIP_KuttaHACK_toy.cppeditsrc/Discretization/Galerkin/FunctionalBoundaryTrace_Galerkin.hedittest/unit/Field/Field3D_Local_Split_DG_btest.cppeditsrc/Field/Element/ElementAssociativityNodeConstructor.cppeditsrc/UserInterfaces/LIPSolver.cppeditsrc/Discretization/DG/AlgebraicEquationSet_TransitionIBL.hedittest/unit/Field/Field2D_Local_Split_DG_btest.cppedittest/system/LocalSolve/ElementLocalSolve3D_DGBR2_Tet_AD_btest.cppeditsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin.hedittest/sandbox/Solve3D_CG_NACA_LIP2_toy.cppeditsrc/Field/Field_CG_CellConstructor.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized.heditsrc/Discretization/FV_TPFA/AlgebraicEquationSet_FV_TPFA.hedittest/unit/Discretization/DG/AlgebraicEquationSet_DGBR2_BuckleyLeverett_ST_btest.cppedittest/system/LocalSolve/ElementLocalSolve3D_DGAdvective_Tet_AD_btest.cppeditsrc/Discretization/Galerkin/JacobianCell_Galerkin_HB.hedittest/unit/Discretization/DG/CMakeLists.txttest/unit/Discretization/DG/AlgebraicEquationSet_DGBR2_Triangle_AD_btest.cppsrc/Field/Partition/XField_Lagrange_balance_impl.htest/unit/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Triangle_AD_btest.cpptest/unit/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized_Triangle_AD_btest.cppsrc/Field/output_Tecplot.cppa3ce23592cd38ad3d1b7d27e1556f604e27b4bba1535907264000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduCG was missing boundary elements in parallel. Now it works! 2018-09-02 12:54:24 -0400a3ce23592cd38ad3d1b7d27e1556f604e27b4bbaCG was missing boundary elements in parallel. Now it works!edittest/unit/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized_Triangle_AD_btest.cppeditsrc/Field/Partition/XField_Lagrange_balance_impl.hedittest/unit/Discretization/DG/AlgebraicEquationSet_DGBR2_Triangle_AD_btest.cppeditsrc/Field/output_Tecplot.cppedittest/unit/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Triangle_AD_btest.cppsrc/Field/Partition/XField_Lagrange_balance_impl.h1ff11388c2a654f65c2d442737fb1a92abf17fde1535913145000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed warning 2018-09-02 14:32:25 -04001ff11388c2a654f65c2d442737fb1a92abf17fdeFixed warningeditsrc/Field/Partition/XField_Lagrange_balance_impl.htest/unit/Field/Element/ElementXFieldVolume_Tetrahedron_btest.cpptest/unit/Field/Element/ElementXFieldAreaBase_Quad_btest.cpptest/unit/Field/Element/ElementXFieldVolume_Hexahedron_btest.cpptest/unit/Field/Element/ElementXFieldAreaBase_Triangle_btest.cppsrc/Field/XField_EdgeLocal_impl.hsrc/Field/Element/ElementXFieldVolume_Instantiate_3D.cppsrc/Field/Element/ElementXFieldArea_Instantiate_2D.cpp8addd9a38af15c915dc25eff9ba71e6e36a0c1ec1535988039000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded evalReferenceCoordinateHessian for 3D. More unit testing for evalReferenceCoordinateHessian 2018-09-03 11:20:39 -04008addd9a38af15c915dc25eff9ba71e6e36a0c1ecAdded evalReferenceCoordinateHessian for 3D. More unit testing for evalReferenceCoordinateHessianedittest/unit/Field/Element/ElementXFieldAreaBase_Quad_btest.cppedittest/unit/Field/Element/ElementXFieldVolume_Hexahedron_btest.cppedittest/unit/Field/Element/ElementXFieldVolume_Tetrahedron_btest.cppeditsrc/Field/XField_EdgeLocal_impl.heditsrc/Field/Element/ElementXFieldArea_Instantiate_2D.cppeditsrc/Field/Element/ElementXFieldVolume_Instantiate_3D.cppedittest/unit/Field/Element/ElementXFieldAreaBase_Triangle_btest.cpptest/unit/Field/Element/ElementXFieldAreaBase_Quad_btest.cpptest/unit/Field/Element/ElementXFieldVolume_Hexahedron_btest.cpp8650cb81a7a1b171ed37d7f2fb704b0d1dcb96b41535997542000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduForgot some DOFs 2018-09-03 13:59:02 -04008650cb81a7a1b171ed37d7f2fb704b0d1dcb96b4Forgot some DOFsedittest/unit/Field/Element/ElementXFieldAreaBase_Quad_btest.cppedittest/unit/Field/Element/ElementXFieldVolume_Hexahedron_btest.cpptest/unit/Field/Element/ElementXFieldVolume_Tetrahedron_btest.cpptest/unit/Field/Element/ElementXFieldAreaBase_Quad_btest.cpptest/unit/Field/Element/ElementXFieldVolume_Hexahedron_btest.cpptest/unit/Field/Element/ElementXFieldAreaBase_Triangle_btest.cpp4860d828bdc8fddd73c7a609c942048a86d035991536003833000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduRelaxed tolerances 2018-09-03 15:43:53 -04004860d828bdc8fddd73c7a609c942048a86d03599Relaxed tolerancesedittest/unit/Field/Element/ElementXFieldAreaBase_Quad_btest.cppedittest/unit/Field/Element/ElementXFieldVolume_Hexahedron_btest.cppedittest/unit/Field/Element/ElementXFieldVolume_Tetrahedron_btest.cppedittest/unit/Field/Element/ElementXFieldAreaBase_Triangle_btest.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cppsrc/Adaptation/MOESS/SolverInterface.htest/system/LocalSolve/ElementLocalSolve3D_DGAdvective_Tet_AD_btest.cpptest/system/LocalSolve/EdgeLocalSolve3D_Dual_Galerkin_Stabilized_AD_btest.cpp5ed919487f9ccbfdd15b36889a8420e5b531b9c51536015840000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduLocal solve updates 2018-09-03 19:04:00 -04005ed919487f9ccbfdd15b36889a8420e5b531b9c5Local solve updatesedittest/system/LocalSolve/ElementLocalSolve3D_DGAdvective_Tet_AD_btest.cppaddtest/system/LocalSolve/EdgeLocalSolve3D_Dual_Galerkin_Stabilized_AD_btest.cppeditsrc/Adaptation/MOESS/SolverInterface.hedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cpptest/system/LocalSolve/EdgeLocalSolve3D_Dual_Galerkin_Stabilized_AD_btest.cppsrc/Discretization/Galerkin/JacobianBoundaryTrace_Galerkin.h3362c064c4487dc437b3e9a29fc52f6168397b2b1536019777000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduModified tolerances 2018-09-03 20:09:37 -04003362c064c4487dc437b3e9a29fc52f6168397b2bModified tolerancesedittest/system/LocalSolve/EdgeLocalSolve3D_Dual_Galerkin_Stabilized_AD_btest.cppeditsrc/Discretization/Galerkin/JacobianBoundaryTrace_Galerkin.hsrc/Field/XFieldVolume_EdgeLocal.cppsrc/Field/XField_EdgeLocal_impl.hsrc/Discretization/Galerkin/JacobianBoundaryTrace_Galerkin.h9b9cc0868f7612a57bc84267a316011e86d83bc91536023441000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduRemove print statements 2018-09-03 21:10:41 -04009b9cc0868f7612a57bc84267a316011e86d83bc9Remove print statementseditsrc/Field/XFieldVolume_EdgeLocal.cppeditsrc/Field/XField_EdgeLocal_impl.heditsrc/Discretization/Galerkin/JacobianBoundaryTrace_Galerkin.htest/system/LocalSolve/ElementLocalSolve1D_DGBR2_Triangle_AD_btest.cpptest/system/LocalSolve/LocalSolve1D_DGBR2_AD_btest.cppf519d30af89979a7332258d3a962d046e2d234b31536029549000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdated 1D local solve and removed depricated test 2018-09-03 22:52:29 -0400f519d30af89979a7332258d3a962d046e2d234b3Updated 1D local solve and removed depricated testedittest/system/LocalSolve/ElementLocalSolve1D_DGBR2_Triangle_AD_btest.cppdeletetest/system/LocalSolve/LocalSolve1D_DGBR2_AD_btest.cppsrc/Adaptation/MOESS/ErrorModel.cppsrc/Field/output_Tecplot.cppe0682522f2354d175edd7c1f45161d331467826e1536089845000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduTecplog xfld dump now includes node+cell ranks 2018-09-04 15:37:25 -0400e0682522f2354d175edd7c1f45161d331467826eTecplog xfld dump now includes node+cell rankseditsrc/Field/output_Tecplot.cppeditsrc/Adaptation/MOESS/ErrorModel.cppsrc/Discretization/DG/IntegrandBoundaryTrace_OutputWeightRsd_DGBR2.hsrc/Adaptation/MOESS/SolverInterface.hsrc/Adaptation/MOESS/SolverInterface_DGBR2.hsrc/Discretization/DG/IntegrateBoundaryTrace_Dispatch_DGBR2.h8c305983809da5ed6acf3ce2b25f754502550a031536100715000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduInclude Galerkin integrands for DGBR2 boundary output functionals 2018-09-04 18:38:35 -04008c305983809da5ed6acf3ce2b25f754502550a03Include Galerkin integrands for DGBR2 boundary output functionalseditsrc/Discretization/DG/IntegrandBoundaryTrace_OutputWeightRsd_DGBR2.heditsrc/Adaptation/MOESS/SolverInterface_DGBR2.heditsrc/Discretization/DG/IntegrateBoundaryTrace_Dispatch_DGBR2.heditsrc/Adaptation/MOESS/SolverInterface.hsrc/Discretization/DG/IntegrateBoundaryTrace_Dispatch_DGBR2.hsrc/Adaptation/MOESS/SolverInterface_DGBR2.h30155747768ddf14eb5729e7f57a0085a57b36871536115947000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed the fix 2018-09-04 22:52:27 -040030155747768ddf14eb5729e7f57a0085a57b3687Fixed the fixeditsrc/Discretization/DG/IntegrateBoundaryTrace_Dispatch_DGBR2.heditsrc/Adaptation/MOESS/SolverInterface_DGBR2.hsrc/Adaptation/MOESS/SolverInterface_DGBR2.h86dd0f2b1dfc657898d5856ff853fad86595b6361536118196000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMissing include 2018-09-04 23:29:56 -040086dd0f2b1dfc657898d5856ff853fad86595b636Missing includeeditsrc/Adaptation/MOESS/SolverInterface_DGBR2.htest/sandbox/Solve3D_CGStabilized_RANSSA_HemisphereCylinder_toy.cpptest/sandbox/Adapt1D_Galerkin_Stabilized_AD_BoundaryLayer_toy.cpptest/sandbox/Solve2D_CGStabilized_Triangle_RANSSA_Joukowski_toy.cpptest/system/LocalSolve/EdgeLocalSolve3D_Dual_Galerkin_Stabilized_AD_btest.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_Euler_CubicSource_toy.cpptest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_OjedaMMS_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_L2_CornerSingularity_toy.cpptest/sandbox/ErrorOrder_1D_CGStab_AD_toy.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cppsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized.htest/system/Adaptation/SolverInterface_Galerkin_Stabilized_btest.cpptest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_Joukowski_toy.cpptest/system/Asymptotic/ErrorEstimateOrder_2D_CG_Triangle_AD_btest.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_Helmholtz_toy.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AR_btest.cpptest/sandbox/ErrorOrder_2D_CGStabilizedLifted_Triangle_AD_toy.cpptest/sandbox/ErrorOrder_2D_CGStabilized_Triangle_AD_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AR_toy.cpptest/sandbox/Solve2D_CGStabilized_Triangle_Euler_GaussianBump_toy.cpptest/system/LocalSolve/EdgeLocalSolve2D_Primal_Galerkin_Stabilized_Triangle_AD_btest.cpptest/system/LocalSolve/EdgeLocalSolve1D_Dual_Galerkin_Stabilized_Line_AD_btest.cpptest/unit/ErrorEstimate/ErrorEstimateCell_Galerkin_AD_btest.cpptest/sandbox/Solve3D_CGStabilized_RANSSA_CRM_Sub_toy.cpptest/system/Asymptotic/ErrorEstimateOrder_1D_CG_Line_AD_btest.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_Poisson_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cpptest/unit/ErrorEstimate/ErrorEstimate_Galerkin_AD_btest.cpptest/unit/ErrorEstimate/ErrorEstimateNodal_Galerkin_AD_btest.cpptest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_FlatPlate_toy.cpptest/system/Asymptotic/ErrorEstimateOrder_2D_CG_Triangle_RD_btest.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/system/Asymptotic/ErrorOrder_2D_CGStabilized_RANS_MMS_btest.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_Euler_btest.cppsrc/Discretization/Galerkin/Stabilization_Galerkin.hsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Output_Stabilized.htest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_BackwardsStep_toy.cpptest/unit/ErrorEstimate/ErrorEstimateCell_PrimalStrongForm_Galerkin_AD_btest.cpptest/sandbox/Adapt1D_Galerkin_Stabilized_AR_toy.cpp082b9bfa0ce99be202f1c6798b5534968b7389881536155834000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edufixing nightly warning 2018-09-05 09:57:14 -0400082b9bfa0ce99be202f1c6798b5534968b738988fixing nightly warningedittest/system/LocalSolve/EdgeLocalSolve1D_Dual_Galerkin_Stabilized_Line_AD_btest.cppedittest/unit/ErrorEstimate/ErrorEstimateNodal_Galerkin_AD_btest.cppedittest/sandbox/ErrorOrder_1D_CGStab_AD_toy.cppedittest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_OjedaMMS_toy.cppeditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized.hedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_BackwardsStep_toy.cppedittest/system/LocalSolve/EdgeLocalSolve2D_Primal_Galerkin_Stabilized_Triangle_AD_btest.cppedittest/sandbox/Solve3D_CGStabilized_RANSSA_HemisphereCylinder_toy.cppedittest/system/Asymptotic/ErrorEstimateOrder_2D_CG_Triangle_AD_btest.cppedittest/sandbox/Solve2D_CGStabilized_Triangle_Euler_GaussianBump_toy.cppedittest/system/Asymptotic/ErrorEstimateOrder_2D_CG_Triangle_RD_btest.cppedittest/sandbox/Solve2D_CGStabilized_Triangle_RANSSA_Joukowski_toy.cppedittest/sandbox/Solve3D_CGStabilized_RANSSA_CRM_Sub_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cppedittest/system/Adaptation/SolverInterface_Galerkin_Stabilized_btest.cppedittest/unit/ErrorEstimate/ErrorEstimateCell_Galerkin_AD_btest.cppedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AR_btest.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppedittest/sandbox/ErrorOrder_2D_CGStabilizedLifted_Triangle_AD_toy.cppedittest/sandbox/ErrorOrder_2D_CGStabilized_Triangle_AD_toy.cppedittest/system/Asymptotic/ErrorOrder_2D_CGStabilized_RANS_MMS_btest.cppedittest/sandbox/Adapt1D_Galerkin_Stabilized_AD_BoundaryLayer_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_Helmholtz_toy.cppeditsrc/Discretization/Galerkin/Stabilization_Galerkin.hedittest/sandbox/Adapt2D_Galerkin_Stabilized_Euler_CubicSource_toy.cppedittest/system/LocalSolve/EdgeLocalSolve3D_Dual_Galerkin_Stabilized_AD_btest.cppedittest/system/Asymptotic/ErrorEstimateOrder_1D_CG_Line_AD_btest.cppeditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Output_Stabilized.hedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_Euler_btest.cppedittest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_Joukowski_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_AR_toy.cppedittest/unit/ErrorEstimate/ErrorEstimate_Galerkin_AD_btest.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_L2_CornerSingularity_toy.cppedittest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_FlatPlate_toy.cppedittest/unit/ErrorEstimate/ErrorEstimateCell_PrimalStrongForm_Galerkin_AD_btest.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_Poisson_toy.cppedittest/sandbox/Adapt1D_Galerkin_Stabilized_AR_toy.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppsrc/pde/IBL/SetIBLtransitionFrontCellGroup.h85093a4294a59d728fb5ca8c594f464cf0b0297c1536161698000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded a class that computes the natural transition location by looping over cells 2018-09-05 11:34:58 -040085093a4294a59d728fb5ca8c594f464cf0b0297cAdded a class that computes the natural transition location by looping over cellsedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppaddsrc/pde/IBL/SetIBLtransitionFrontCellGroup.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_iter_TurbWake_btest.cppsrc/pde/IBL/SetIBLtransitionFrontCellGroup.h840619aaa209808f10b77c39ada5b7232f116c5c1536168577000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduStarted a new test case to examine iterative forced transition solution 2018-09-05 13:29:37 -0400840619aaa209808f10b77c39ada5b7232f116c5cStarted a new test case to examine iterative forced transition solutioneditsrc/pde/IBL/SetIBLtransitionFrontCellGroup.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppaddtest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_iter_TurbWake_btest.cppsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.htest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppsrc/Field/tools/for_each_GhostBoundaryTraceGroup.hsrc/Field/XField_EdgeLocal_impl.h3a7f4c1ecd15ac38ff277ac86a84126fd60004631536169961000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educhanged the essential bc application to use ghost boundaries. No longer need to know the neighbourhood at the AlgEqSet level, and other patches should work straight out the box 2018-09-05 13:52:41 -04003a7f4c1ecd15ac38ff277ac86a84126fd6000463changed the essential bc application to use ghost boundaries. No longer need to know the neighbourhood at the AlgEqSet level, and other patches should work straight out the boxeditsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.haddsrc/Field/tools/for_each_GhostBoundaryTraceGroup.heditsrc/Field/XField_EdgeLocal_impl.hedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppsrc/Discretization/DG/IntegrandBoundaryTrace_Output_DGBR2.h18fe03eb249d8ec47be3c03fc80c720d38c13dbe1536177537000https://acdl.mit.edu/csi/user/ursachiursachiursachi@mit.eduFix for DGBR2 boundary output functionals 2018-09-05 15:58:57 -040018fe03eb249d8ec47be3c03fc80c720d38c13dbeFix for DGBR2 boundary output functionalseditsrc/Discretization/DG/IntegrandBoundaryTrace_Output_DGBR2.hsrc/pde/NS/BCRANSSA2D.hsrc/pde/NS/BCEulermitAVDiffusion2D.hsrc/pde/NS/BCEuler2D.hsrc/pde/NS/BCNavierStokes2D.h210bd7d3095dfcc0b1f25626420fc38d95af927c1536177606000https://acdl.mit.edu/csi/user/ursachiursachiursachi@mit.eduBCEuler has vector size greater than 20 2018-09-05 16:00:06 -0400210bd7d3095dfcc0b1f25626420fc38d95af927cBCEuler has vector size greater than 20editsrc/pde/NS/BCRANSSA2D.heditsrc/pde/NS/BCEulermitAVDiffusion2D.heditsrc/pde/NS/BCEuler2D.heditsrc/pde/NS/BCNavierStokes2D.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_iter_TurbWake_btest.cppsrc/pde/IBL/SetIBLtransitionFrontCellGroup.h6677f6329a77d528c92568045e695e020a2d3ceb1536177673000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduIterative forced transition solution works quite well for the two cases tried 2018-09-05 16:01:13 -04006677f6329a77d528c92568045e695e020a2d3cebIterative forced transition solution works quite well for the two cases triededittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppeditsrc/pde/IBL/SetIBLtransitionFrontCellGroup.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_iter_TurbWake_btest.cpptest/system/Asymptotic/ErrorEstimateOrder_2D_DGAdvective_Triangle_AD_btest.cpptest/system/IO/ErrorEstimates/ErrorEst_2D_DGAdvective_AD_FullTest.txttest/system/IO/ErrorEstimates/ErrorEst_2D_DGAdvective_AD_MinTest.txt0953d1858966755c4a113c62594f8ef3259e35191536177861000https://acdl.mit.edu/csi/user/ursachiursachiursachi@mit.edu2D DGAdvective error estimate order test 2018-09-05 16:04:21 -04000953d1858966755c4a113c62594f8ef3259e35192D DGAdvective error estimate order testaddtest/system/Asymptotic/ErrorEstimateOrder_2D_DGAdvective_Triangle_AD_btest.cppaddtest/system/IO/ErrorEstimates/ErrorEst_2D_DGAdvective_AD_FullTest.txtaddtest/system/IO/ErrorEstimates/ErrorEst_2D_DGAdvective_AD_MinTest.txttest/unit/Discretization/Galerkin/FunctionalBoundaryTrace_Dispatch_Galerkin_AD_btest.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppsrc/Discretization/Galerkin/IntegrandBoundaryTrace_Flux_mitState_Nitsche.htest/unit/Discretization/Galerkin/IntegrandBoundaryTrace_Flux_mitState_Nitsche_AD_btest.cpp3cd799b6fb790a7b99164fdd2b48c597e62c4be11536249381000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduChanged Nitche to Cb = 2.0 for AD CG P3 adaptation 2018-09-06 11:56:21 -04003cd799b6fb790a7b99164fdd2b48c597e62c4be1Changed Nitche to Cb = 2.0 for AD CG P3 adaptationedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppedittest/unit/Discretization/Galerkin/FunctionalBoundaryTrace_Dispatch_Galerkin_AD_btest.cppedittest/unit/Discretization/Galerkin/IntegrandBoundaryTrace_Flux_mitState_Nitsche_AD_btest.cppeditsrc/Discretization/Galerkin/IntegrandBoundaryTrace_Flux_mitState_Nitsche.htest/unit/UnitGrids/XField2D_GilesPierceNozzle_HACK.cppscripts/vera/exclusions.txttest/sandbox/Adapt1D_DGBR2_Line_Euler_GilesPierce_toy.cpp8d9f574d953cbda92eb142a27ce1ee3ce63d54271536253744000https://acdl.mit.edu/csi/user/ursachiursachiursachi@mit.eduFixing errors 2018-09-06 13:09:04 -04008d9f574d953cbda92eb142a27ce1ee3ce63d5427Fixing errorsedittest/unit/UnitGrids/XField2D_GilesPierceNozzle_HACK.cppedittest/sandbox/Adapt1D_DGBR2_Line_Euler_GilesPierce_toy.cppeditscripts/vera/exclusions.txtsrc/Adaptation/MOESS/ErrorModel.cpptest/unit/Field/Field2D_EdgeLocal_Dual_CG_btest.cpptest/system/LocalSolve/EdgeLocalSolve3D_Dual_Galerkin_Stabilized_AD_btest.cpptest/unit/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_Triangle_Euler_btest.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cpptest/unit/Field/Field1D_EdgeLocal_Dual_CG_btest.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AR_btest.cpptest/unit/Field/XField3D_EdgeLocal_Dual_Split_btest.cpptest/unit/Field/XField2D_EdgeLocal_Dual_btest.cpptest/unit/Field/Field2D_EdgeLocal_Primal_CG_btest.cppsrc/Discretization/Galerkin/IntegrandBoundaryTrace_Flux_mitState_Nitsche.hsrc/Field/XField_Local_Neighborhoods.htest/system/LocalSolve/EdgeLocalSolve1D_Dual_Galerkin_Stabilized_Line_AD_btest.cppsrc/Field/XFieldArea_EdgeLocal.cppsrc/Field/XFieldVolume_EdgeLocal.cpptest/unit/Field/XField1D_EdgeLocal_Dual_btest.cpptest/unit/Field/XField2D_EdgeLocal_Dual_Split_btest.cppsrc/Field/XFieldLine_EdgeLocal.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.htest/unit/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_Triangle_AD_btest.cpptest/unit/Field/Field2D_EdgeLocal_PrimalNeighbors_CG_btest.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_Euler_btest.cppsrc/Field/XField_EdgeLocal_impl.htest/unit/Field/XField3D_EdgeLocal_Dual_btest.cppsrc/Discretization/Galerkin/Stabilization_Galerkin.h7a4984e2d2a9a17212b82788c425197eaf973a4f1536269875000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educhanged Dual to Dual2 in anticipation of the new local solve 2018-09-06 17:37:55 -04007a4984e2d2a9a17212b82788c425197eaf973a4fchanged Dual to Dual2 in anticipation of the new local solveeditsrc/Field/XFieldLine_EdgeLocal.cppedittest/unit/Field/XField3D_EdgeLocal_Dual_btest.cppedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cppedittest/unit/Field/XField2D_EdgeLocal_Dual_btest.cppedittest/unit/Field/XField2D_EdgeLocal_Dual_Split_btest.cppedittest/unit/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_Triangle_AD_btest.cppedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AR_btest.cppeditsrc/Field/XField_Local_Neighborhoods.hedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppeditsrc/Field/XFieldVolume_EdgeLocal.cppeditsrc/Discretization/Galerkin/IntegrandBoundaryTrace_Flux_mitState_Nitsche.heditsrc/Field/XFieldArea_EdgeLocal.cppedittest/unit/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_Triangle_Euler_btest.cppedittest/unit/Field/Field2D_EdgeLocal_PrimalNeighbors_CG_btest.cppedittest/unit/Field/Field1D_EdgeLocal_Dual_CG_btest.cppedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_Euler_btest.cppedittest/unit/Field/Field2D_EdgeLocal_Primal_CG_btest.cppeditsrc/Discretization/Galerkin/Stabilization_Galerkin.hedittest/system/LocalSolve/EdgeLocalSolve3D_Dual_Galerkin_Stabilized_AD_btest.cppeditsrc/Adaptation/MOESS/ErrorModel.cppedittest/system/LocalSolve/EdgeLocalSolve1D_Dual_Galerkin_Stabilized_Line_AD_btest.cppeditsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.hedittest/unit/Field/XField3D_EdgeLocal_Dual_Split_btest.cppeditsrc/Field/XField_EdgeLocal_impl.hedittest/unit/Field/XField1D_EdgeLocal_Dual_btest.cppedittest/unit/Field/Field2D_EdgeLocal_Dual_CG_btest.cpptest/unit/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_Triangle_Euler_btest.cpptest/unit/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_Triangle_AD_btest.cpp4b4cbb49293c1beb0394d39a0c2ff7a1ce91bd0d1536325242000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduupdated unit tests to use the ghost boundary trace freezing rule 2018-09-07 09:00:42 -04004b4cbb49293c1beb0394d39a0c2ff7a1ce91bd0dupdated unit tests to use the ghost boundary trace freezing ruleedittest/unit/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_Triangle_Euler_btest.cppedittest/unit/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_Triangle_AD_btest.cppsrc/Field/XFieldLine_EdgeLocal.cppsrc/Field/XField_EdgeLocal.hsrc/Field/XFieldArea_EdgeLocal.cppsrc/Field/XFieldVolume_EdgeLocal.cppsrc/Field/XField_EdgeLocal_impl.h1edf58d4e3c486810358c412c45b82f3376df9741536326432000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edupreparations for the alternative constructor 2018-09-07 09:20:32 -04001edf58d4e3c486810358c412c45b82f3376df974preparations for the alternative constructoreditsrc/Field/XFieldArea_EdgeLocal.cppeditsrc/Field/XFieldLine_EdgeLocal.cppeditsrc/Field/XField_EdgeLocal_impl.heditsrc/Field/XField_EdgeLocal.heditsrc/Field/XFieldVolume_EdgeLocal.cppsrc/Adaptation/MOESS/NLOPT/MOESS_Metric_Optimizer_NLOPT.hsrc/Adaptation/MOESS/NLOPT/MOESS_Metric_Optimizer_NLOPT.cpptest/sandbox/Adapt2D_Mesh_Optimizer_toy.cppsrc/Adaptation/MeshAdapter.cppsrc/Adaptation/MOESS/MetricError.htest/unit/Adaptation/MOESS/ImpliedMetric_Optimizer_NLOPT_btest.cppsrc/Meshing/avro/MesherInterface_avro.cppsrc/Adaptation/MOESS/MOESS.cpptest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppsrc/Adaptation/MOESS/MetricError.cppsrc/Adaptation/MOESS/SolverInterface_MetricError.hsrc/Adaptation/CMakeLists.txtf2c1eedba2df4f32c365d492d14d4222e19f868b1536342922000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.educleanup of implied metric limiter 2018-09-07 13:55:22 -0400f2c1eedba2df4f32c365d492d14d4222e19f868bcleanup of implied metric limiterdeletesrc/Adaptation/MOESS/NLOPT/MOESS_Metric_Optimizer_NLOPT.heditsrc/Meshing/avro/MesherInterface_avro.cppdeletesrc/Adaptation/MOESS/MetricError.cppdeletesrc/Adaptation/MOESS/SolverInterface_MetricError.heditsrc/Adaptation/MeshAdapter.cppeditsrc/Adaptation/MOESS/MOESS.cppaddtest/sandbox/Adapt2D_Mesh_Optimizer_toy.cppaddtest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppdeletesrc/Adaptation/MOESS/NLOPT/MOESS_Metric_Optimizer_NLOPT.cppeditsrc/Adaptation/CMakeLists.txtdeletesrc/Adaptation/MOESS/MetricError.hedittest/unit/Adaptation/MOESS/ImpliedMetric_Optimizer_NLOPT_btest.cpptest/sandbox/Adapt2D_Mesh_Optimizer_toy.cpptest/sandbox/Adapt3D_Mesh_Optimizer_toy.cpp55a7ebb90f8472f6e634aba737de988e1a8bc1a21536343290000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduvera fixes 2018-09-07 14:01:30 -040055a7ebb90f8472f6e634aba737de988e1a8bc1a2vera fixesedittest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppedittest/sandbox/Adapt2D_Mesh_Optimizer_toy.cpptest/unit/UnitGrids/XField2D_GilesPierceNozzle_HACK.cpptest/sandbox/Adapt2D_DGBR2_Euler_GilesPierce_AV_toy.cpptest/unit/UnitGrids/XField2D_GilesPierceNozzle_HACK_btest.cpp4dcad5109d10ea3c6f35f82b6541ba71cd0ba3b31536343842000https://acdl.mit.edu/csi/user/ursachiursachiursachi@mit.eduFixing errors 2018-09-07 14:10:42 -04004dcad5109d10ea3c6f35f82b6541ba71cd0ba3b3Fixing errorsedittest/unit/UnitGrids/XField2D_GilesPierceNozzle_HACK.cppedittest/unit/UnitGrids/XField2D_GilesPierceNozzle_HACK_btest.cppedittest/sandbox/Adapt2D_DGBR2_Euler_GilesPierce_AV_toy.cpptest/unit/Adaptation/MOESS/ImpliedMetric_Optimizer_NLOPT_btest.cpp005b01fb90c929d36b911a75f15411e69686cc451536347395000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edudidn't mean to include a certain test 2018-09-07 15:09:55 -0400005b01fb90c929d36b911a75f15411e69686cc45didn't mean to include a certain testedittest/unit/Adaptation/MOESS/ImpliedMetric_Optimizer_NLOPT_btest.cppsrc/Field/XField_Local_Neighborhoods.htest/system/LocalSolve/EdgeLocalSolve1D_Dual_Galerkin_Stabilized_Line_AD_btest.cppsrc/Adaptation/MOESS/ErrorModel.cpptest/unit/ErrorEstimate/AWResidualInteriorTrace_HDG_AD_btest_OFF.cpptest/unit/Field/Field2D_EdgeLocal_Dual_CG_btest.cpptest/system/LocalSolve/EdgeLocalSolve3D_Dual_Galerkin_Stabilized_AD_btest.cpptest/unit/Field/XField1D_EdgeLocal_Dual_btest.cpptest/unit/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_Triangle_Euler_btest.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cpptest/unit/Field/Field1D_EdgeLocal_Dual_CG_btest.cpptest/unit/Field/XField2D_EdgeLocal_Dual_Split_btest.cpptest/sandbox/deformationTime.dattest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AR_btest.cpptest/unit/Field/XField3D_EdgeLocal_Dual_Split_btest.cpptest/unit/Field/Field2D_EdgeLocal_PrimalNeighbors_CG_btest.cpptest/unit/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_Triangle_AD_btest.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_Euler_btest.cpptest/unit/Field/XField3D_EdgeLocal_Dual_btest.cpptest/unit/Field/XField2D_EdgeLocal_Dual_btest.cpptest/unit/Field/Field2D_EdgeLocal_Primal_CG_btest.cpptest/unit/Discretization/DG/ResidualCell_DGAdvective_Euler2D_btest.cppd90c49fef64db7f2c791e1d56f06692d0a6624211536352658000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduswitching back to Dual notation, splitting the EdgeLocal and ElementLocal in future 2018-09-07 16:37:38 -0400d90c49fef64db7f2c791e1d56f06692d0a662421switching back to Dual notation, splitting the EdgeLocal and ElementLocal in futureedittest/system/LocalSolve/EdgeLocalSolve3D_Dual_Galerkin_Stabilized_AD_btest.cppedittest/unit/Field/XField3D_EdgeLocal_Dual_Split_btest.cppeditsrc/Field/XField_Local_Neighborhoods.hedittest/unit/ErrorEstimate/AWResidualInteriorTrace_HDG_AD_btest_OFF.cppeditsrc/Adaptation/MOESS/ErrorModel.cppedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AR_btest.cppedittest/unit/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_Triangle_Euler_btest.cppedittest/unit/Field/XField3D_EdgeLocal_Dual_btest.cppedittest/system/LocalSolve/EdgeLocalSolve1D_Dual_Galerkin_Stabilized_Line_AD_btest.cppedittest/unit/Field/Field2D_EdgeLocal_PrimalNeighbors_CG_btest.cppedittest/unit/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_Triangle_AD_btest.cppedittest/unit/Field/Field2D_EdgeLocal_Primal_CG_btest.cppedittest/unit/Field/XField1D_EdgeLocal_Dual_btest.cppaddtest/sandbox/deformationTime.datedittest/unit/Field/Field2D_EdgeLocal_Dual_CG_btest.cppedittest/unit/Field/XField2D_EdgeLocal_Dual_btest.cppedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cppedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_Euler_btest.cppedittest/unit/Field/XField2D_EdgeLocal_Dual_Split_btest.cppedittest/unit/Discretization/DG/ResidualCell_DGAdvective_Euler2D_btest.cppedittest/unit/Field/Field1D_EdgeLocal_Dual_CG_btest.cppsrc/Field/XFieldLine_EdgeLocal.cppsrc/Field/XField_EdgeLocal.hsrc/Field/XFieldArea_EdgeLocal.cppsrc/Field/XFieldVolume_EdgeLocal.cppsrc/Field/XField_EdgeLocal_impl.h7ee031b6d827deeaff961fd19c38d4d7c7ca620b1536352743000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumoved to ptrs in the base class, dry run for elemental version 2018-09-07 16:39:03 -04007ee031b6d827deeaff961fd19c38d4d7c7ca620bmoved to ptrs in the base class, dry run for elemental versioneditsrc/Field/XFieldArea_EdgeLocal.cppeditsrc/Field/XField_EdgeLocal_impl.heditsrc/Field/XFieldLine_EdgeLocal.cppeditsrc/Field/XFieldVolume_EdgeLocal.cppeditsrc/Field/XField_EdgeLocal.hsrc/Topology/ElementTopology.cppCMakeInclude/Dependencies.cmakeCMakeInclude/Finds/FindAVRO.cmake216beb68f0d9f68e462746758a5a99a10855a8e41536405372000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduTopology instantiations and avro cmake updates 2018-09-08 07:16:12 -0400216beb68f0d9f68e462746758a5a99a10855a8e4Topology instantiations and avro cmake updateseditsrc/Topology/ElementTopology.cppeditCMakeInclude/Dependencies.cmakeeditCMakeInclude/Finds/FindAVRO.cmaketest/sandbox/Adapt2D_DGBR2_Euler_GilesPierce_AV_toy.cppa0ec0f85b222a880408603c30b7f6cc4134105f21536587527000https://acdl.mit.edu/csi/user/ursachiursachiursachi@mit.eduDummy push 2018-09-10 09:52:07 -0400a0ec0f85b222a880408603c30b7f6cc4134105f2Dummy pushedittest/sandbox/Adapt2D_DGBR2_Euler_GilesPierce_AV_toy.cppsrc/Adaptation/MOESS/NodalMetrics.cppCMakeInclude/Dependencies.cmakec81e40cdd4d28161508f6a314eff8c07c1d882451536589365000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed AVRO cmake typo. Minor format cleanup for limited metric. 2018-09-10 10:22:45 -0400c81e40cdd4d28161508f6a314eff8c07c1d88245Fixed AVRO cmake typo. Minor format cleanup for limited metric.editCMakeInclude/Dependencies.cmakeeditsrc/Adaptation/MOESS/NodalMetrics.cppsrc/Field/XFieldLine_EdgeLocal.cppsrc/Field/XField_EdgeLocal.hsrc/Field/XFieldArea_EdgeLocal.cppsrc/Field/XFieldVolume_EdgeLocal.cppsrc/Field/XField_EdgeLocal_impl.he9a445d89f8814f404a97a025a92d0ce0a3a08bb1536595716000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edurefactor to move most member variables into the base class XField_Common 2018-09-10 12:08:36 -0400e9a445d89f8814f404a97a025a92d0ce0a3a08bbrefactor to move most member variables into the base class XField_Commoneditsrc/Field/XFieldArea_EdgeLocal.cppeditsrc/Field/XField_EdgeLocal_impl.heditsrc/Field/XFieldLine_EdgeLocal.cppeditsrc/Field/XFieldVolume_EdgeLocal.cppeditsrc/Field/XField_EdgeLocal.hsrc/Field/XFieldLine_EdgeLocal.cppsrc/Field/XField_EdgeLocal.hsrc/Field/XField_Local_Common.hsrc/Field/XFieldArea_EdgeLocal.cppsrc/Field/XFieldVolume_EdgeLocal.cppsrc/Field/XField_EdgeLocal_impl.h2b50068ea178c9b5f4850d04197de95edc0fef5a1536604904000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduForgot a file, and all non edge specific methods are now buried in the base class XField_Local_Common 2018-09-10 14:41:44 -04002b50068ea178c9b5f4850d04197de95edc0fef5aForgot a file, and all non edge specific methods are now buried in the base class XField_Local_Commonaddsrc/Field/XField_Local_Common.heditsrc/Field/XFieldArea_EdgeLocal.cppeditsrc/Field/XField_EdgeLocal_impl.heditsrc/Field/XFieldLine_EdgeLocal.cppeditsrc/Field/XFieldVolume_EdgeLocal.cppeditsrc/Field/XField_EdgeLocal.hsrc/Field/XFieldLine_EdgeLocal.cppsrc/Field/XField_ElementLocal.hsrc/Field/XFieldArea_EdgeLocal.cpptest/unit/Field/XField2D_ElementLocal_Dual_btest.cppsrc/Field/XFieldVolume_EdgeLocal.cppsrc/Field/CMakeLists.txtsrc/Field/XField_Local_Common.hsrc/Field/XFieldArea_ElementLocal.cppsrc/Field/XField_ElementLocal_impl.hce0cd1b6990284ed09c6abf0d2e6771cb46cbaeb1536613445000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educhanged a template setup and added a first Element Local test 2018-09-10 17:04:05 -0400ce0cd1b6990284ed09c6abf0d2e6771cb46cbaebchanged a template setup and added a first Element Local testeditsrc/Field/XFieldArea_EdgeLocal.cppaddsrc/Field/XFieldArea_ElementLocal.cppeditsrc/Field/CMakeLists.txteditsrc/Field/XFieldLine_EdgeLocal.cppeditsrc/Field/XFieldVolume_EdgeLocal.cppaddsrc/Field/XField_ElementLocal.haddtest/unit/Field/XField2D_ElementLocal_Dual_btest.cppaddsrc/Field/XField_ElementLocal_impl.heditsrc/Field/XField_Local_Common.hsrc/Meshing/EGTess/EGTessModel_aflr4.cppCMakeInclude/Finds/FindAFLR.cmakesrc/UserInterfaces/LIPSolver.cppf2a8ec441297c4adbad228c0460ac6f72f5f4b7f1536629921000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduStarting work on AFLR 16.26.2 2018-09-10 21:38:41 -0400f2a8ec441297c4adbad228c0460ac6f72f5f4b7fStarting work on AFLR 16.26.2editCMakeInclude/Finds/FindAFLR.cmakeeditsrc/UserInterfaces/LIPSolver.cppeditsrc/Meshing/EGTess/EGTessModel_aflr4.cppsrc/Field/XField_ElementLocal.hsrc/Field/XFieldArea_ElementLocal.cppce6dbacb071e69565277af073364ac45a3da6dde1536684672000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edunew splitting routine compiles 2018-09-11 12:51:12 -0400ce6dbacb071e69565277af073364ac45a3da6ddenew splitting routine compileseditsrc/Field/XField_ElementLocal.heditsrc/Field/XFieldArea_ElementLocal.cppsrc/Field/XField_ElementLocal.hsrc/Field/XField_Local_Common_Instantiate_2D.cppsrc/Field/XField_EdgeLocal.hsrc/Field/XField_Local_Common.hsrc/Field/XFieldArea_EdgeLocal.cpp7072374e3af01756b90aaa7038dfeb8c09558e531536704644000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumoved the split function up to Common level, made it more sophisticated to handle edge and element grids at the same time 2018-09-11 18:24:04 -04007072374e3af01756b90aaa7038dfeb8c09558e53moved the split function up to Common level, made it more sophisticated to handle edge and element grids at the same timeeditsrc/Field/XField_ElementLocal.haddsrc/Field/XField_Local_Common_Instantiate_2D.cppeditsrc/Field/XField_Local_Common.heditsrc/Field/XField_EdgeLocal.heditsrc/Field/XFieldArea_EdgeLocal.cppsrc/Field/XFieldLine_EdgeLocal.cppsrc/Field/CMakeLists.txtsrc/Field/XField_Local_Common_Instantiate_2D.cppsrc/Adaptation/MOESS/ErrorModel.cppsrc/Field/XFieldVolume_EdgeLocal.cpptest/unit/Field/XField3D_EdgeLocal_Dual_Split_btest.cpp3748c314603b8c55dde49edc365802dc606e60051536708454000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduExpanded the 3D split and changed the arguments for the 1D split to match the 2D. Field passing again 2018-09-11 19:27:34 -04003748c314603b8c55dde49edc365802dc606e6005Expanded the 3D split and changed the arguments for the 1D split to match the 2D. Field passing againedittest/unit/Field/XField3D_EdgeLocal_Dual_Split_btest.cppeditsrc/Adaptation/MOESS/ErrorModel.cppeditsrc/Field/XFieldLine_EdgeLocal.cppeditsrc/Field/XFieldVolume_EdgeLocal.cppeditsrc/Field/CMakeLists.txteditsrc/Field/XField_Local_Common_Instantiate_2D.cpptest/unit/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_Triangle_AD_btest.cpp509dd058ef344f6de7c7f9d52c29a3fbf517a9071536708549000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduforgot you can't write to tmp/ 2018-09-11 19:29:09 -0400509dd058ef344f6de7c7f9d52c29a3fbf517a907forgot you can't write to tmp/edittest/unit/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_Triangle_AD_btest.cppsrc/Adaptation/MOESS/ErrorModel.cppdd7b7e772666ae09320a0aa97e4a3b799f819a801536708933000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edufind and replace bug 2018-09-11 19:35:33 -0400dd7b7e772666ae09320a0aa97e4a3b799f819a80find and replace bugeditsrc/Adaptation/MOESS/ErrorModel.cppsrc/Discretization/HDG/ProjectSoln_HDG.hsrc/Field/tools/for_each_InteriorFieldTraceGroup.hsrc/Field/Field_impl.hsrc/Field/tools/for_each_InteriorFIeldTraceGroup.hfe13ebe3b26e61a59b4877648a48688e8788041f1536709391000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edutypo in file name 2018-09-11 19:43:11 -0400fe13ebe3b26e61a59b4877648a48688e8788041ftypo in file nameaddsrc/Field/tools/for_each_InteriorFieldTraceGroup.hdeletesrc/Field/tools/for_each_InteriorFIeldTraceGroup.heditsrc/Field/Field_impl.heditsrc/Discretization/HDG/ProjectSoln_HDG.htest/unit/Optimization/Problems/Truss/LengthObjective_Truss_btest.cpptest/sandbox/Solve2D_HDG_Triangle_NavierStokes_OjedaMMS_toy.cpptest/sandbox/Solve2D_HDG_Triangle_NavierStokes_Joukowski_toy.cpptest/unit/Optimization/Problems/Truss/TrussOptimization_wo_adapt_btest.cpptest/sandbox/Solve1D_HDG_Line_Euler_Sod_toy_LGOFF.cpptest/unit/Optimization/Problems/Truss/JacobianConstraint_Truss_btest.cpptest/sandbox/Solve2D_HDG_Line_Euler_Sod_ST_toy.cpptest/sandbox/Solve2D_EDG_Triangle_NavierStokes_OjedaMMS_toy_LGOFF.cpptest/sandbox/Solve2D_HDG_Triangle_NavierStokes_FlatPlate_toy.cpp56fe90b0e7f3edc77d2e248e72b5d1d118d4b2d61536756199000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduforgot test directory 2018-09-12 08:43:19 -040056fe90b0e7f3edc77d2e248e72b5d1d118d4b2d6forgot test directoryedittest/unit/Optimization/Problems/Truss/LengthObjective_Truss_btest.cppedittest/sandbox/Solve2D_HDG_Triangle_NavierStokes_Joukowski_toy.cppedittest/sandbox/Solve2D_HDG_Triangle_NavierStokes_FlatPlate_toy.cppedittest/unit/Optimization/Problems/Truss/TrussOptimization_wo_adapt_btest.cppedittest/sandbox/Solve2D_HDG_Triangle_NavierStokes_OjedaMMS_toy.cppedittest/sandbox/Solve2D_HDG_Line_Euler_Sod_ST_toy.cppedittest/sandbox/Solve1D_HDG_Line_Euler_Sod_toy_LGOFF.cppedittest/sandbox/Solve2D_EDG_Triangle_NavierStokes_OjedaMMS_toy_LGOFF.cppedittest/unit/Optimization/Problems/Truss/JacobianConstraint_Truss_btest.cppsrc/Field/XField_Local_Common_Instantiate_2D.cpptest/unit/Field/XField2D_ElementLocal_Dual_btest.cpp5696a1a470128cc8f73cd5ac9f62278ef4d9bd1c1536757829000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educommented out some impossible branches in 2D, and added another unsplit test 2018-09-12 09:10:29 -04005696a1a470128cc8f73cd5ac9f62278ef4d9bd1ccommented out some impossible branches in 2D, and added another unsplit testeditsrc/Field/XField_Local_Common_Instantiate_2D.cppedittest/unit/Field/XField2D_ElementLocal_Dual_btest.cpptest/unit/Field/XField2D_ElementLocal_Dual_btest.cppeddea53dcfe5a91b5eb96809e8c8ef3cf17f92951536763458000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduunit tests 2018-09-12 10:44:18 -0400eddea53dcfe5a91b5eb96809e8c8ef3cf17f9295unit testsedittest/unit/Field/XField2D_ElementLocal_Dual_btest.cppsrc/Field/XFieldArea_ElementLocal.cppsrc/Field/XFieldArea_EdgeLocal.cpp5846d17da75b751bc58b7b42223afe294442fc1b1536763974000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduElementArea now calls the same actual split method as edge local 2018-09-12 10:52:54 -04005846d17da75b751bc58b7b42223afe294442fc1bElementArea now calls the same actual split method as edge localeditsrc/Field/XFieldArea_EdgeLocal.cppeditsrc/Field/XFieldArea_ElementLocal.cppsrc/Field/XField_ElementLocal.hsrc/Field/XField_EdgeLocal.htest/unit/Field/XField2D_ElementLocal_Dual_btest.cppsrc/Field/XField_EdgeLocal_impl.hsrc/Field/XField_Local_Common.hsrc/Field/XFieldArea_ElementLocal.cppsrc/Field/XField_ElementLocal_impl.hdac2ac8a2c563da40c145eed4c87202e1b3f3d6a1536767429000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduadded a copy constructor test, working on testing splits for Element Local 2018-09-12 11:50:29 -0400dac2ac8a2c563da40c145eed4c87202e1b3f3d6aadded a copy constructor test, working on testing splits for Element Localeditsrc/Field/XFieldArea_ElementLocal.cppeditsrc/Field/XField_ElementLocal.heditsrc/Field/XField_Local_Common.heditsrc/Field/XField_ElementLocal_impl.hedittest/unit/Field/XField2D_ElementLocal_Dual_btest.cppeditsrc/Field/XField_EdgeLocal.heditsrc/Field/XField_EdgeLocal_impl.htest/unit/Field/XField2D_ElementLocal_Dual_Split_btest.cppsrc/Field/XFieldArea_ElementLocal.cppb53130eed67ff170631ae5a5d2e4532205c5376b1536767715000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edua very first element local split test 2018-09-12 11:55:15 -0400b53130eed67ff170631ae5a5d2e4532205c5376ba very first element local split testaddtest/unit/Field/XField2D_ElementLocal_Dual_Split_btest.cppeditsrc/Field/XFieldArea_ElementLocal.cppsrc/Field/XField_Local_Common_Instantiate_2D.cpp9dd316292b95041c2fa2c3dce37f1454082d4aea1536768430000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumoved some memory outside of loops so it doesn't get created and destroyed so often 2018-09-12 12:07:10 -04009dd316292b95041c2fa2c3dce37f1454082d4aeamoved some memory outside of loops so it doesn't get created and destroyed so ofteneditsrc/Field/XField_Local_Common_Instantiate_2D.cppsrc/Field/XField_Local_Common_Instantiate_2D.cpptest/unit/Field/XField2D_ElementLocal_Dual_btest.cpptest/unit/Field/XField2D_ElementLocal_Dual_Split_btest.cppsrc/Field/XFieldArea_ElementLocal.cppab129c8ef7e4aadc262310055e96100da9d9bca11536773544000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduunit tests for adding in new cellgroup 1 elements and traces, looks like everything works 2018-09-12 13:32:24 -0400ab129c8ef7e4aadc262310055e96100da9d9bca1unit tests for adding in new cellgroup 1 elements and traces, looks like everything worksedittest/unit/Field/XField2D_ElementLocal_Dual_btest.cppeditsrc/Field/XFieldArea_ElementLocal.cppedittest/unit/Field/XField2D_ElementLocal_Dual_Split_btest.cppeditsrc/Field/XField_Local_Common_Instantiate_2D.cpptest/unit/Field/XField2D_ElementLocal_Dual_Split_btest.cpptest/unit/Field/XField2D_ElementLocal_Dual_btest.cppaefeda0ed6968e5e00c58aa01fa67f696aa963cd1536775251000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduunit test involving reattaching a cell group 1 boundary element 2018-09-12 14:00:51 -0400aefeda0ed6968e5e00c58aa01fa67f696aa963cdunit test involving reattaching a cell group 1 boundary elementedittest/unit/Field/XField2D_ElementLocal_Dual_Split_btest.cppedittest/unit/Field/XField2D_ElementLocal_Dual_btest.cppsrc/pde/NS/SolutionFunction_Euler2D.hsrc/pde/NS/SolutionFunction_Euler2D.cpptest/sandbox/Solve2D_DGBR2_Euler_Riemann_AV_RK_toy.cppbac16609edc6055c2b268265cc66116f58f8950e1536781509000https://acdl.mit.edu/csi/user/eam5515eam5515eam5515@psu.eduAdding RK Riemann Problem 2018-09-12 15:45:09 -0400bac16609edc6055c2b268265cc66116f58f8950eAdding RK Riemann Problemeditsrc/pde/NS/SolutionFunction_Euler2D.cppaddtest/sandbox/Solve2D_DGBR2_Euler_Riemann_AV_RK_toy.cppeditsrc/pde/NS/SolutionFunction_Euler2D.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_iter_TurbWake_btest.cppsrc/pde/IBL/SetTransitionFrontIBL2D_InteriorTraceGroup.hsrc/pde/IBL/SetIBLtransitionFrontCellGroup.h97eeeadfc1cc54140005867a3fd1945320eec0c41536789416000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded detection for transition front that occurs at element interfaces. 2018-09-12 17:56:56 -040097eeeadfc1cc54140005867a3fd1945320eec0c4Added detection for transition front that occurs at element interfaces.addsrc/pde/IBL/SetTransitionFrontIBL2D_InteriorTraceGroup.heditsrc/pde/IBL/SetIBLtransitionFrontCellGroup.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_iter_TurbWake_btest.cpptest/unit/pde/NS/PDERANSSA2D_btest.cpptest/unit/UnitGrids/XField2D_Box_Triangle_Lagrange_X1_btest.cpptest/unit/Field/Field2D_EdgeLocal_Dual_CG_btest.cppsrc/BasisFunction/BasisFunctionVolume_Tetrahedron_Hierarchical.cpptest/unit/pde/NS/PDENavierStokes2D_btest.cppsrc/Discretization/Galerkin/FunctionalBoundaryTrace_WeightedResidual_Galerkin.hsrc/Field/FieldVolume_CG_BoundaryTrace_Instantiate_3D.cpptest/unit/BasisFunction/basisFunctionHessian.nbtest/sandbox/deformationTime.datsrc/pde/NS/PDENavierStokes3D.htest/unit/pde/NS/PDENavierStokes3D_btest.cppsrc/pde/NS/PDENavierStokes2D.htest/unit/BasisFunction/BasisFunctionVolume_Tetrahedron_Hierarchical_btest.cppsrc/Field/output_Tecplot.cpptest/unit/Field/Field2D_EdgeLocal_PrimalNeighbors_CG_btest.cpptest/unit/Field/Field2D_EdgeLocal_Primal_CG_btest.cpptest/unit/UnitGrids/XField3D_Box_Tet_X1_btest.cppsrc/Field/Field_CG_Topology.cppc7052070ab4fc2543c7942f6998a952b882dea4b1536792000000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduVarious fixes to get NS GLS working in 3D 2018-09-12 18:40:00 -0400c7052070ab4fc2543c7942f6998a952b882dea4bVarious fixes to get NS GLS working in 3Deditsrc/BasisFunction/BasisFunctionVolume_Tetrahedron_Hierarchical.cppedittest/unit/BasisFunction/BasisFunctionVolume_Tetrahedron_Hierarchical_btest.cppeditsrc/pde/NS/PDENavierStokes2D.heditsrc/Discretization/Galerkin/FunctionalBoundaryTrace_WeightedResidual_Galerkin.hedittest/unit/pde/NS/PDERANSSA2D_btest.cppeditsrc/pde/NS/PDENavierStokes3D.hedittest/unit/pde/NS/PDENavierStokes3D_btest.cppeditsrc/Field/output_Tecplot.cppedittest/unit/Field/Field2D_EdgeLocal_Primal_CG_btest.cppedittest/unit/BasisFunction/basisFunctionHessian.nbdeletetest/sandbox/deformationTime.datedittest/unit/pde/NS/PDENavierStokes2D_btest.cppedittest/unit/Field/Field2D_EdgeLocal_Dual_CG_btest.cppedittest/unit/UnitGrids/XField2D_Box_Triangle_Lagrange_X1_btest.cppeditsrc/Field/FieldVolume_CG_BoundaryTrace_Instantiate_3D.cppedittest/unit/Field/Field2D_EdgeLocal_PrimalNeighbors_CG_btest.cppedittest/unit/UnitGrids/XField3D_Box_Tet_X1_btest.cppeditsrc/Field/Field_CG_Topology.cpptest/system/IO/ErrorOrder/ErrorOrder_2D_CGStab_RANSSA_MMS2_FullTest.txttest/system/IO/ErrorOrder/ErrorOrder_2D_CGStab_RANSSA_MMS1_FullTest.txt10f7b3dbef3600b3b5661ea16390121917a295a81536841140000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdated pyrite files for nightly testing 2018-09-13 08:19:00 -040010f7b3dbef3600b3b5661ea16390121917a295a8Updated pyrite files for nightly testingedittest/system/IO/ErrorOrder/ErrorOrder_2D_CGStab_RANSSA_MMS1_FullTest.txtedittest/system/IO/ErrorOrder/ErrorOrder_2D_CGStab_RANSSA_MMS2_FullTest.txttest/unit/CMakeLists.txttest/unit/Field/Element/CMakeLists.txtb93eeaebc9ed50626010b1f32bc9d98ba0d2d7f51536844367000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduSet longer timeout for specific long running unit tests 2018-09-13 09:12:47 -0400b93eeaebc9ed50626010b1f32bc9d98ba0d2d7f5Set longer timeout for specific long running unit testsedittest/unit/Field/Element/CMakeLists.txtedittest/unit/CMakeLists.txtsrc/Field/XField_Local_Common_Instantiate_3D.cpptest/unit/Field/XField2D_ElementLocal_Dual_btest.cppsrc/Field/XFieldArea_EdgeLocal.cppsrc/Adaptation/MOESS/ErrorModel.cppsrc/Adaptation/MOESS/ErrorModel.hsrc/Field/XFieldVolume_EdgeLocal.cppsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized.htest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cppsrc/Field/XField_Local_Common.htest/unit/Field/XField2D_EdgeLocal_Dual_Split_btest.cppsrc/Field/XField_ElementLocal.hsrc/Field/XField_Local_Common_Instantiate_1D.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.hsrc/Adaptation/MOESS/MOESSParams.hsrc/Field/XField_Local_Common_Instantiate_2D.cppsrc/Field/CMakeLists.txttest/unit/Field/XField2D_EdgeLocal_Dual_btest.cppsrc/Discretization/DG/AlgebraicEquationSet_DGBR2_impl.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin.hsrc/Field/XFieldLine_ElementLocal.cppsrc/Field/XFieldArea_ElementLocal.cppsrc/Field/XFieldVolume_ElementLocal.cpp6e02d6439b6adc9c1434cec5dae14610eff37c6e1536877812000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educaught the memory leak, and a bunch of instantiations and fixes and unit tests etc 2018-09-13 18:30:12 -04006e02d6439b6adc9c1434cec5dae14610eff37c6ecaught the memory leak, and a bunch of instantiations and fixes and unit tests etceditsrc/Field/XFieldVolume_EdgeLocal.cppeditsrc/Discretization/DG/AlgebraicEquationSet_DGBR2_impl.haddsrc/Field/XField_Local_Common_Instantiate_1D.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppeditsrc/Adaptation/MOESS/ErrorModel.cppedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cppeditsrc/Field/XField_Local_Common_Instantiate_2D.cppaddsrc/Field/XField_Local_Common_Instantiate_3D.cppeditsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin.haddsrc/Field/XFieldVolume_ElementLocal.cppaddsrc/Field/XFieldLine_ElementLocal.cppeditsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized.heditsrc/Field/XFieldArea_ElementLocal.cppedittest/unit/Field/XField2D_ElementLocal_Dual_btest.cppeditsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.hedittest/unit/Field/XField2D_EdgeLocal_Dual_Split_btest.cppeditsrc/Adaptation/MOESS/MOESSParams.heditsrc/Field/CMakeLists.txteditsrc/Field/XField_ElementLocal.heditsrc/Adaptation/MOESS/ErrorModel.hedittest/unit/Field/XField2D_EdgeLocal_Dual_btest.cppeditsrc/Field/XFieldArea_EdgeLocal.cppeditsrc/Field/XField_Local_Common.htest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cppfb0e8154fb3052d821c231874225d5ebb1cd3eac1536877864000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduforgot a thing 2018-09-13 18:31:04 -0400fb0e8154fb3052d821c231874225d5ebb1cd3eacforgot a thingaddtest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cppsrc/Field/XField_Local_Common_Instantiate_3D.cpp188927342f5418b25fb830e55eb0335273ecf9cf1536879568000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edustyle check 2018-09-13 18:59:28 -0400188927342f5418b25fb830e55eb0335273ecf9cfstyle checkeditsrc/Field/XField_Local_Common_Instantiate_3D.cppsrc/Field/Tuple/ParamTuple.htest/unit/Field/Element/ElementTuple_btest.cpp7f4327edb827ffe752c7dd8e803aa083caee8bf71536892292000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded promote_Surreal for ParamTuple 2018-09-13 22:31:32 -04007f4327edb827ffe752c7dd8e803aa083caee8bf7Added promote_Surreal for ParamTupleeditsrc/Field/Tuple/ParamTuple.hedittest/unit/Field/Element/ElementTuple_btest.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppsrc/Field/XField_Local_Common_Instantiate_1D.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cppe9dc57a62b43e777e689809c4741fa2362ae83331536930109000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edufixes: 2018-09-14 09:01:49 -0400e9dc57a62b43e777e689809c4741fa2362ae8333fixes:editsrc/Field/XField_Local_Common_Instantiate_1D.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cpp9768968278d6125282b0c325ff05196d88ffd91c1536931436000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edufile renaming switches 2018-09-14 09:23:56 -04009768968278d6125282b0c325ff05196d88ffd91cfile renaming switchesedittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.htest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cpp7dbada1f04b987404b2931faa61e2f8f59bc469c1536940163000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduforgot to remove print out. 2018-09-14 11:49:23 -04007dbada1f04b987404b2931faa61e2f8f59bc469cforgot to remove print out.edittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cppeditsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.hsrc/Field/XField_Local_Common.h8835ecf3567d57622db9c00a0e0f5fc20908d1c81536948406000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduadded catch for ghost boundaries 2018-09-14 14:06:46 -04008835ecf3567d57622db9c00a0e0f5fc20908d1c8added catch for ghost boundarieseditsrc/Field/XField_Local_Common.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.h3af3779d2a39b8b3b6032086c4ebc3f0a4d707741536948480000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduforgot file write 2018-09-14 14:08:00 -04003af3779d2a39b8b3b6032086c4ebc3f0a4d70774forgot file writeeditsrc/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized.hsrc/Field/XField_Local_Common.h7165a5cb7c48d84ca8cbf89a75cccd2acb6a27911536948688000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumissed a thing 2018-09-14 14:11:28 -04007165a5cb7c48d84ca8cbf89a75cccd2acb6a2791missed a thingeditsrc/Field/XField_Local_Common.htest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cppsrc/Field/XField_ElementLocal_impl.hb69bc9f859f0619c63f7d43c06779b5ab294a4701536952364000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduDon't do parallel solves yet with the new ElementDualLocal solves 2018-09-14 15:12:44 -0400b69bc9f859f0619c63f7d43c06779b5ab294a470Don't do parallel solves yet with the new ElementDualLocal solvesedittest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cppeditsrc/Field/XField_ElementLocal_impl.htest/sandbox/Solve2D_DGBR2_Euler_Riemann_AV_RK_toy.cppsrc/pde/NS/BCEulermitAVDiffusion1D.hsrc/pde/NS/BCEulermitAVDiffusion2D.hsrc/pde/NS/SolutionFunction_Euler2D.cpptest/sandbox/Solve2D_DGBR2_Euler_ForwardStep_AV_ST_toy.cppsrc/pde/NS/BCEuler1D.hsrc/pde/NS/BCEuler1D.cppsrc/pde/NS/BCEuler2D.hsrc/pde/NS/PDEEulermitAVDiffusion2D.htest/unit/pde/NS/BCEuler2D_btest.cppsrc/pde/NS/PDEEulermitAVDiffusion1D.hsrc/pde/NS/BCEuler2D_mitState.htest/unit/pde/NS/BCEuler1D_btest.cppsrc/pde/NS/BCEuler2D.cppsrc/pde/NS/BCEuler1D_mitState_ST.htest/sandbox/Adapt2D_DGBR2_Euler_ArtNozzle_AV_ST_toy.cppsrc/pde/NS/SolutionFunction_Euler2D.hsrc/pde/NS/BCEuler1D_mitState.hfff384664c2d7fa1993c735ef3496e8ed43177e81536952431000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduAdded TimeOut BC for spacetime that is distinct from BCNone 2018-09-14 15:13:51 -0400fff384664c2d7fa1993c735ef3496e8ed43177e8Added TimeOut BC for spacetime that is distinct from BCNoneeditsrc/pde/NS/BCEulermitAVDiffusion1D.hedittest/sandbox/Adapt2D_DGBR2_Euler_ArtNozzle_AV_ST_toy.cppedittest/unit/pde/NS/BCEuler1D_btest.cppeditsrc/pde/NS/BCEuler2D.heditsrc/pde/NS/BCEulermitAVDiffusion2D.heditsrc/pde/NS/BCEuler1D_mitState.heditsrc/pde/NS/BCEuler1D_mitState_ST.heditsrc/pde/NS/BCEuler2D_mitState.heditsrc/pde/NS/SolutionFunction_Euler2D.heditsrc/pde/NS/PDEEulermitAVDiffusion2D.heditsrc/pde/NS/SolutionFunction_Euler2D.cppeditsrc/pde/NS/BCEuler1D.haddtest/sandbox/Solve2D_DGBR2_Euler_Riemann_AV_RK_toy.cppedittest/unit/pde/NS/BCEuler2D_btest.cppeditsrc/pde/NS/PDEEulermitAVDiffusion1D.heditsrc/pde/NS/BCEuler1D.cppeditsrc/pde/NS/BCEuler2D.cppedittest/sandbox/Solve2D_DGBR2_Euler_ForwardStep_AV_ST_toy.cppsrc/BasisFunction/ReferenceElement.hsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Hierarchical.hsrc/BasisFunction/LagrangeDOFMap.hsrc/BasisFunction/Quadrature_Cache.hsrc/BasisFunction/BasisFunctionSpacetime_Projection.cppsrc/BasisFunction/BasisFunctionSpacetime_Pentatope.cppsrc/BasisFunction/CellToTrace.cppsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cppsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.hsrc/BasisFunction/BasisFunctionSpacetime_Pentatope.hsrc/BasisFunction/BasisFunction_TraceOrientation.hsrc/BasisFunction/BasisFunctionSpacetime_Projection.hsrc/BasisFunction/TraceToCellRefCoord.hsrc/Quadrature/QuadratureSpacetime_Pentatope.cppsrc/Quadrature/QuadratureSpacetime.hsrc/Quadrature/CMakeLists.txtsrc/BasisFunction/BasisFunction_RefElement_Split.hsrc/BasisFunction/ReferenceElement.cppsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.cppsrc/BasisFunction/ElementEdges.cppsrc/BasisFunction/BasisFunctionBase.hsrc/BasisFunction/BasisFunctionSpacetime.hsrc/BasisFunction/CMakeLists.txtfa0664b64bf72515e7be189ef8e1bc0991b633691536956950000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edusome 4d stuff 2018-09-14 16:29:10 -0400fa0664b64bf72515e7be189ef8e1bc0991b63369some 4d stuffeditsrc/BasisFunction/LagrangeDOFMap.heditsrc/BasisFunction/ReferenceElement.haddsrc/BasisFunction/BasisFunctionSpacetime_Pentatope.heditsrc/BasisFunction/ElementEdges.cppeditsrc/BasisFunction/BasisFunction_RefElement_Split.haddsrc/BasisFunction/BasisFunctionSpacetime.heditsrc/BasisFunction/CMakeLists.txtaddsrc/BasisFunction/BasisFunctionSpacetime_Projection.cppaddsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cppeditsrc/BasisFunction/ReferenceElement.cppaddsrc/BasisFunction/BasisFunctionSpacetime_Pentatope.cppaddsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Hierarchical.heditsrc/BasisFunction/Quadrature_Cache.haddsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.cppaddsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.heditsrc/BasisFunction/BasisFunction_TraceOrientation.heditsrc/Quadrature/CMakeLists.txtaddsrc/Quadrature/QuadratureSpacetime.haddsrc/BasisFunction/BasisFunctionSpacetime_Projection.heditsrc/BasisFunction/TraceToCellRefCoord.heditsrc/BasisFunction/CellToTrace.cppeditsrc/BasisFunction/BasisFunctionBase.haddsrc/Quadrature/QuadratureSpacetime_Pentatope.cpptest/unit/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange_btest.cpptest/unit/BasisFunction/TraceToCellRefCoord_Pentatope_btest.cpptest/unit/Quadrature/QuadratureSpacetime_Pentatope_btest.cppbe410bb6cef3e78b3d352e98a233b972724b2afc1536957780000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduplaceholders for unit tests 2018-09-14 16:43:00 -0400be410bb6cef3e78b3d352e98a233b972724b2afcplaceholders for unit testsaddtest/unit/Quadrature/QuadratureSpacetime_Pentatope_btest.cppaddtest/unit/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange_btest.cppaddtest/unit/BasisFunction/TraceToCellRefCoord_Pentatope_btest.cppsrc/Meshing/EGTess/EGTessModel_aflr4.cppCMakeInclude/Finds/FindAFLR.cmakesrc/Meshing/EGTess/CMakeLists.txt6031e15e3fcd63f956c6d3b592b572d7416ee9771537018139000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduStart working on latest AFLR4 2018-09-15 09:28:59 -04006031e15e3fcd63f956c6d3b592b572d7416ee977Start working on latest AFLR4editCMakeInclude/Finds/FindAFLR.cmakeeditsrc/Meshing/EGTess/CMakeLists.txteditsrc/Meshing/EGTess/EGTessModel_aflr4.cppscripts/cppcheck/suppressions.txtsrc/BasisFunction/BasisFunctionLine_RBS.hCMakeInclude/CompilerFlags.cmakesrc/Field/FieldData/FieldDataMatrixD_Cell.hsrc/BasisFunction/BasisFunctionArea.hsrc/Field/XField.hsrc/BasisFunction/BasisFunctionLine_Lagrange.hsrc/Field/XField_Local_Base.hsrc/pde/AnalyticFunction/ScalarFunction2D.hsrc/BasisFunction/BasisFunctionVolume.hsrc/Meshing/EGADS/EGFace.cppsrc/Quadrature/QuadratureLine.hsrc/BasisFunction/BasisFunctionNode.hsrc/BasisFunction/BasisFunctionLine_Legendre.htest/unit/Discretization/DG/ElementIntegral_DGBR2_2D_Triangle_AD_btest.cppsrc/pde/AdvectionDiffusion/ViscousFlux2D.hsrc/Adaptation/MOESS/CostModel_LogEuclidean.cppsrc/pde/PorousMedia/RelPermModel_PowerLaw.hsrc/Meshing/EGTess/XFieldDomain.hsrc/BasisFunction/BasisFunctionSpacetime.hsrc/BasisFunction/BasisFunctionLine_Bernstein.hsrc/pde/PorousMedia/ViscosityModel_Constant.hsrc/Meshing/EGADS/EGLoop.cppsrc/Python/PyDict.hsrc/BasisFunction/BasisFunctionLine_Hierarchical.hsrc/BasisFunction/BasisFunctionLineBase.hsrc/Meshing/EGADS/EGObject.hsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatrixD_NonZeroPattern.hsrc/pde/PorousMedia/DensityModel.hsrc/Discretization/QuadratureOrder.hsrc/pde/AnalyticFunction/ScalarFunction1D.hsrc/BasisFunction/BasisFunctionSpacetime_Pentatope.cppsrc/Meshing/EGADS/EGObject.cppsrc/Field/XField_Local_Common.hsrc/Adaptation/MOESS/TAO/MOESS_PX_Optimizer_TAO.cppsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.hsrc/pde/PorousMedia/CapillaryModel.hsrc/Field/Element/GalerkinWeightedIntegral_New.hsrc/pde/AdvectionDiffusion/ViscousFlux1D.hsrc/Meshing/EGADS/EGBody.cppsrc/Python/Parameter.hsrc/pde/AdvectionDiffusion/ViscousFlux3D.htest/unit/LinearAlgebra/DenseLinAlg/VectorS_btest.cppsrc/Field/FieldAssociativityConstructor.hsrc/pde/PorousMedia/PorosityModel.hcd1a51db53976221ee34dffa74495fd0004d29461537154858000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMany cppcheck fixes, but not all 2018-09-16 23:27:38 -0400cd1a51db53976221ee34dffa74495fd0004d2946Many cppcheck fixes, but not alleditsrc/Meshing/EGADS/EGLoop.cppeditsrc/BasisFunction/BasisFunctionLine_Legendre.heditsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.heditsrc/pde/AdvectionDiffusion/ViscousFlux3D.heditsrc/BasisFunction/BasisFunctionLine_RBS.heditsrc/Meshing/EGTess/XFieldDomain.heditscripts/cppcheck/suppressions.txteditsrc/BasisFunction/BasisFunctionLine_Bernstein.heditsrc/Meshing/EGADS/EGObject.cppeditsrc/Meshing/EGADS/EGBody.cppeditsrc/Python/PyDict.heditsrc/Adaptation/MOESS/CostModel_LogEuclidean.cppeditsrc/BasisFunction/BasisFunctionLineBase.heditsrc/BasisFunction/BasisFunctionLine_Lagrange.heditsrc/Meshing/EGADS/EGFace.cppeditsrc/Meshing/EGADS/EGObject.heditCMakeInclude/CompilerFlags.cmakeedittest/unit/Discretization/DG/ElementIntegral_DGBR2_2D_Triangle_AD_btest.cppeditsrc/Field/FieldAssociativityConstructor.heditsrc/Field/FieldData/FieldDataMatrixD_Cell.heditsrc/pde/PorousMedia/ViscosityModel_Constant.heditsrc/pde/AnalyticFunction/ScalarFunction1D.heditsrc/pde/PorousMedia/CapillaryModel.heditsrc/Field/XField_Local_Base.heditsrc/BasisFunction/BasisFunctionVolume.heditsrc/Discretization/QuadratureOrder.heditsrc/pde/AdvectionDiffusion/ViscousFlux2D.heditsrc/pde/PorousMedia/DensityModel.heditsrc/Adaptation/MOESS/TAO/MOESS_PX_Optimizer_TAO.cppeditsrc/Python/Parameter.heditsrc/BasisFunction/BasisFunctionSpacetime_Pentatope.cppeditsrc/BasisFunction/BasisFunctionArea.hedittest/unit/LinearAlgebra/DenseLinAlg/VectorS_btest.cppeditsrc/Field/XField_Local_Common.heditsrc/pde/PorousMedia/RelPermModel_PowerLaw.heditsrc/Quadrature/QuadratureLine.heditsrc/BasisFunction/BasisFunctionLine_Hierarchical.heditsrc/Field/Element/GalerkinWeightedIntegral_New.heditsrc/Field/XField.heditsrc/BasisFunction/BasisFunctionNode.heditsrc/pde/AdvectionDiffusion/ViscousFlux1D.heditsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatrixD_NonZeroPattern.heditsrc/pde/AnalyticFunction/ScalarFunction2D.heditsrc/BasisFunction/BasisFunctionSpacetime.heditsrc/pde/PorousMedia/PorosityModel.hsrc/Meshing/EGADS/EGObject.hsrc/Meshing/EGADS/EGModel.cppsrc/Meshing/EGADS/EGModel.h9098cad7325746bf0e6d0aeff649ab7fa08de4561537156773000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed compile error 2018-09-16 23:59:33 -04009098cad7325746bf0e6d0aeff649ab7fa08de456Fixed compile erroreditsrc/Meshing/EGADS/EGModel.heditsrc/Meshing/EGADS/EGObject.heditsrc/Meshing/EGADS/EGModel.cpptest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cppsrc/Field/XField_Local_Common.h7bbfb76877ad3f42124abf37185592109a945e071537204402000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educaught a ghost boundary bug, now have different bugs in parallel 2018-09-17 13:13:22 -04007bbfb76877ad3f42124abf37185592109a945e07caught a ghost boundary bug, now have different bugs in paralleleditsrc/Field/XField_Local_Common.hedittest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cppsrc/Meshing/EGTess/EGTessModel_aflr4.cppsrc/Meshing/EGTess/CMakeLists.txt23c33177d037759415499b937faa4e6ffd71aa561537209556000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMore work on latest AFLR4, does not work yet 2018-09-17 14:39:16 -040023c33177d037759415499b937faa4e6ffd71aa56More work on latest AFLR4, does not work yeteditsrc/Meshing/EGTess/CMakeLists.txteditsrc/Meshing/EGTess/EGTessModel_aflr4.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cppsrc/Field/XField_impl.hsrc/Field/Partition/XField_Lagrange_balance_impl.htest/system/LocalSolve/EdgeLocalSolve2D_Primal_Galerkin_Stabilized_Triangle_AD_btest.cpp38dc6c59da61233163956a2abf02363dd4dc2cb81537224113000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdated Partiioning for CG element dual solves 2018-09-17 18:41:53 -040038dc6c59da61233163956a2abf02363dd4dc2cb8Updated Partiioning for CG element dual solveseditsrc/Field/XField_impl.hedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cppedittest/system/LocalSolve/EdgeLocalSolve2D_Primal_Galerkin_Stabilized_Triangle_AD_btest.cppeditsrc/Field/Partition/XField_Lagrange_balance_impl.htest/system/LocalSolve/EdgeLocalSolve2D_Primal_Galerkin_Stabilized_Triangle_AD_btest.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cppCMakeInclude/Checks/CheckCAPS.cmake197030a468b4dd207e71543112c67652dd801a5a1537231792000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduRelaxed tolerances on local solves 2018-09-17 20:49:52 -0400197030a468b4dd207e71543112c67652dd801a5aRelaxed tolerances on local solveseditCMakeInclude/Checks/CheckCAPS.cmakeedittest/system/LocalSolve/EdgeLocalSolve2D_Primal_Galerkin_Stabilized_Triangle_AD_btest.cppedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cppscripts/jenkins/SANS_Commit.shtest/sandbox/Solve2D_DGBR2_Euler_Riemann_AV_RK_toy.cpp1dc02e8f08700d4137a5238b5091960f131b93b31537269036000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduNightly fixes 2018-09-18 07:10:36 -04001dc02e8f08700d4137a5238b5091960f131b93b3Nightly fixeseditscripts/jenkins/SANS_Commit.shedittest/sandbox/Solve2D_DGBR2_Euler_Riemann_AV_RK_toy.cppCMakeInclude/Builds/BuildPETSC.cmakeCMakeInclude/Checks/CheckPETSC.cmakeCMakeInclude/Checks/petsc_ksp_ex1_test.cxx39ff887f6bc4e4fb3520d3a199e646b931eeaee91537270700000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpgraded PETSc version 2018-09-18 07:38:20 -040039ff887f6bc4e4fb3520d3a199e646b931eeaee9Upgraded PETSc versioneditCMakeInclude/Checks/petsc_ksp_ex1_test.cxxeditCMakeInclude/Checks/CheckPETSC.cmakeeditCMakeInclude/Builds/BuildPETSC.cmakeCMakeInclude/Checks/CheckPETSC.cmake76107e6d8cb21eb808d0c05118b4cf9c27b5a3411537275011000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed PETSc version test 2018-09-18 08:50:11 -040076107e6d8cb21eb808d0c05118b4cf9c27b5a341Fixed PETSc version testeditCMakeInclude/Checks/CheckPETSC.cmakesrc/pde/AnalyticFunction/ScalarFunction2D.h89b4e01ffdb3cd29f49a77998f6325d93ebf9ed61537304137000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educhanged to allow Real indices for monomial 2018-09-18 16:55:37 -040089b4e01ffdb3cd29f49a77998f6325d93ebf9ed6changed to allow Real indices for monomialeditsrc/pde/AnalyticFunction/ScalarFunction2D.htest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cppcd34ec2d9643e438b694f8aef2aec38a03050b7a1537304167000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduadded ghost tests, turned off the split ghost tests, as we don't have a large enough grid that group 0 has no frozen dofs 2018-09-18 16:56:07 -0400cd34ec2d9643e438b694f8aef2aec38a03050b7aadded ghost tests, turned off the split ghost tests, as we don't have a large enough grid that group 0 has no frozen dofsedittest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cppsrc/Meshing/EGTess/EGTessModel_aflr4.cppsrc/Meshing/EGTess/EGTessModel.hsrc/Meshing/EGTess/CMakeLists.txtCMakeInclude/Finds/FindAFLR.cmakef2333cb929c84e044775c028e998dbe21409dd651537361830000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMany AFLR4 updates 2018-09-19 08:57:10 -0400f2333cb929c84e044775c028e998dbe21409dd65Many AFLR4 updateseditsrc/Meshing/EGTess/EGTessModel_aflr4.cppeditsrc/Meshing/EGTess/CMakeLists.txteditsrc/Meshing/EGTess/EGTessModel.heditCMakeInclude/Finds/FindAFLR.cmakesrc/Discretization/Galerkin/Stabilization_Galerkin.h5dec5b1a01446db349c6d6fb72a9698828872fd31537362874000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educhanged some comments 2018-09-19 09:14:34 -04005dec5b1a01446db349c6d6fb72a9698828872fd3changed some commentseditsrc/Discretization/Galerkin/Stabilization_Galerkin.hsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.htest/sandbox/Adapt2D_Galerkin_Stabilized_L2_CornerSingularity_toy.cppsrc/Discretization/Galerkin/Stabilization_Galerkin.htest/sandbox/Adapt2D_Galerkin_Stabilized_Poisson_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cpp554c683159bb21d09bdf75dae3a4efa51a28cdb21537369040000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduvim put some actual tabs in... and changing some odd pieces 2018-09-19 10:57:20 -0400554c683159bb21d09bdf75dae3a4efa51a28cdb2vim put some actual tabs in... and changing some odd piecesedittest/sandbox/Adapt2D_Galerkin_Stabilized_Poisson_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cppeditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.heditsrc/Discretization/Galerkin/Stabilization_Galerkin.hedittest/sandbox/Adapt2D_Galerkin_Stabilized_L2_CornerSingularity_toy.cppsrc/Meshing/EGTess/CMakeLists.txtCMakeInclude/Finds/FindAFLR.cmake6669c434bfc8a2a3d8de0361a4f171eea97689a81537375533000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAnother try 2018-09-19 12:45:33 -04006669c434bfc8a2a3d8de0361a4f171eea97689a8Another tryeditsrc/Meshing/EGTess/CMakeLists.txteditCMakeInclude/Finds/FindAFLR.cmaketest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppcbb74e332f152c9845556b3738b33679b33d9adc1537386541000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduwarning about unset data 2018-09-19 15:49:01 -0400cbb74e332f152c9845556b3738b33679b33d9adcwarning about unset dataedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt1D_DGBR2_AD_toy.cppe515bd0a0b35567aab594d50e5ef634f7c6807a21537389614000https://acdl.mit.edu/csi/user/ursachiursachiursachi@mit.eduAdded 1D AR test file 2018-09-19 16:40:14 -0400e515bd0a0b35567aab594d50e5ef634f7c6807a2Added 1D AR test fileaddtest/sandbox/Adapt1D_DGBR2_AD_toy.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cpp2e1e6caaef6bacb75cfd0cb170941af0ceb18d1b1537392710000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edurelaxing tolerance 2018-09-19 17:31:50 -04002e1e6caaef6bacb75cfd0cb170941af0ceb18d1brelaxing toleranceedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cppsrc/Meshing/EGTess/XFieldDomain_impl.hsrc/BasisFunction/TraceToCellRefCoord_Tetrahedron.cpptest/unit/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange_btest.cppsrc/BasisFunction/Documentation/TraceToCellRefCoord.msrc/BasisFunction/Quadrature_Cache.hsrc/BasisFunction/BasisFunctionSpacetime_Pentatope.cpptest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cppsrc/Quadrature/Quadrature_Simplex_GrundmannMoeller.hsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.htest/unit/Quadrature/QuadratureSpacetime_Pentatope_btest.cppsrc/BasisFunction/BasisFunctionSpacetime_Pentatope.hsrc/Quadrature/QuadratureSpacetime_Pentatope.cppsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.cppsrc/Meshing/avro/MesherInterface_avro.cppsrc/Meshing/avro/CMakeLists.txtsrc/Meshing/EGTess/XFieldDomain.hCMakeInclude/Finds/FindAVRO.cmake751d1a448352e89a5e0ba42b15cf978b051c5ccc1537394421000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edutrace to cell reference coordinates (plus matlab script), grundmann-moeller quadrature unit tests 2018-09-19 18:00:21 -0400751d1a448352e89a5e0ba42b15cf978b051c5ccctrace to cell reference coordinates (plus matlab script), grundmann-moeller quadrature unit testseditsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.cppeditsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.heditsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cppeditsrc/BasisFunction/BasisFunctionSpacetime_Pentatope.cppedittest/unit/Quadrature/QuadratureSpacetime_Pentatope_btest.cppeditsrc/BasisFunction/Quadrature_Cache.heditsrc/BasisFunction/TraceToCellRefCoord_Tetrahedron.cppaddsrc/BasisFunction/Documentation/TraceToCellRefCoord.meditsrc/Quadrature/QuadratureSpacetime_Pentatope.cppedittest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppeditsrc/BasisFunction/BasisFunctionSpacetime_Pentatope.haddsrc/Quadrature/Quadrature_Simplex_GrundmannMoeller.hedittest/unit/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange_btest.cppeditsrc/Meshing/EGTess/XFieldDomain.heditsrc/Meshing/avro/CMakeLists.txteditsrc/Meshing/avro/MesherInterface_avro.cppeditsrc/Meshing/EGTess/XFieldDomain_impl.heditCMakeInclude/Finds/FindAVRO.cmaketest/unit/Quadrature/QuadratureSpacetime_Pentatope_btest.cppf49c7503dfdbc1711f644b51cee67776da8b5ffe1537394545000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edutrace to cell reference coordinates (plus matlab script), grundmann-moeller quadrature unit tests 2018-09-19 18:02:25 -0400f49c7503dfdbc1711f644b51cee67776da8b5ffetrace to cell reference coordinates (plus matlab script), grundmann-moeller quadrature unit testsedittest/unit/Quadrature/QuadratureSpacetime_Pentatope_btest.cppsrc/Meshing/EGTess/EGTessModel.cppsrc/Meshing/EGTess/EGTessModel.hb4d9a7952e043505e6e4259f07619a5728d000641537396713000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded a tecplot dump for EGTessModel 2018-09-19 18:38:33 -0400b4d9a7952e043505e6e4259f07619a5728d00064Added a tecplot dump for EGTessModeleditsrc/Meshing/EGTess/EGTessModel.cppeditsrc/Meshing/EGTess/EGTessModel.hsrc/BasisFunction/TraceToCellRefCoord.hsrc/BasisFunction/TraceToCellRefCoord_Tetrahedron.cppsrc/BasisFunction/TraceToCellRefCoord_Hexahedron.cppsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cpptest/unit/Quadrature/QuadratureSpacetime_Pentatope_btest.cppsrc/Topology/ElementTopology.hb1796ed928766b6b28e80e46b6cfcb964cd84d921537447316000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduelement topology tracks number of permutations so possible trace orientations is correct 2018-09-20 08:41:56 -0400b1796ed928766b6b28e80e46b6cfcb964cd84d92element topology tracks number of permutations so possible trace orientations is correctedittest/unit/Quadrature/QuadratureSpacetime_Pentatope_btest.cppeditsrc/BasisFunction/TraceToCellRefCoord_Tetrahedron.cppeditsrc/BasisFunction/TraceToCellRefCoord_Hexahedron.cppeditsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cppeditsrc/Topology/ElementTopology.heditsrc/BasisFunction/TraceToCellRefCoord.hsrc/Meshing/EGTess/EGTessModel_aflr4.cppsrc/Meshing/EGTess/EGTessModel.cppbf23ce32fddc0a7b0d031ce1d3cf7e0c848a262f1537469608000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMore debugging outputs 2018-09-20 14:53:28 -0400bf23ce32fddc0a7b0d031ce1d3cf7e0c848a262fMore debugging outputseditsrc/Meshing/EGTess/EGTessModel_aflr4.cppeditsrc/Meshing/EGTess/EGTessModel.cpptest/unit/CMakeLists.txttest/CMakeLists.txttest/system/CMakeLists.txt8c2e27843d8e6adf8160044ed840e3ddbeadfc6b1537480927000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixes so boost xml files are correctly dumped 2018-09-20 18:02:07 -04008c2e27843d8e6adf8160044ed840e3ddbeadfc6bFixes so boost xml files are correctly dumpededittest/CMakeLists.txtedittest/system/CMakeLists.txtedittest/unit/CMakeLists.txttest/CMakeLists.txttest/system/CMakeLists.txtd617b0675d37f022ad63e033e06ca150a463509e1537493966000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed system tests for coverage 2018-09-20 21:39:26 -0400d617b0675d37f022ad63e033e06ca150a463509eFixed system tests for coverageedittest/CMakeLists.txtedittest/system/CMakeLists.txttest/unit/Discretization/Block/CMakeLists.txta7c18303b4f50a07eef01e32ed6be80a7f1d77bb1537497227000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAllowed for longer run times on specific tests 2018-09-20 22:33:47 -0400a7c18303b4f50a07eef01e32ed6be80a7f1d77bbAllowed for longer run times on specific testsedittest/unit/Discretization/Block/CMakeLists.txttest/unit/CMakeLists.txttest/CMakeLists.txttest/system/CMakeLists.txt905b58e60d036aa879df67551130e2bcaa8bdae91537501495000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduOne more tweak for coverage of system tests 2018-09-20 23:44:55 -0400905b58e60d036aa879df67551130e2bcaa8bdae9One more tweak for coverage of system testsedittest/CMakeLists.txtedittest/unit/CMakeLists.txtedittest/system/CMakeLists.txttest/system/CMakeLists.txt944f0c8515d1879cff948d9c70415925bf1909ff1537501631000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduTypo 2018-09-20 23:47:11 -0400944f0c8515d1879cff948d9c70415925bf1909ffTypoedittest/system/CMakeLists.txttest/CMakeLists.txt988e44118dc1c2ff33544bec7404f63f66ded4db1537528741000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMissed one more 2018-09-21 07:19:01 -0400988e44118dc1c2ff33544bec7404f63f66ded4dbMissed one moreedittest/CMakeLists.txttest/CMakeLists.txttest/system/CMakeLists.txt5a529040fe7bb9abd7ca0f961908b8d5d3b277c91537528769000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduForgot to add files 2018-09-21 07:19:29 -04005a529040fe7bb9abd7ca0f961908b8d5d3b277c9Forgot to add filesedittest/system/CMakeLists.txtedittest/CMakeLists.txttest/CMakeLists.txtf8cd7ebc758d385e6b594a74110b9df750c28ad01537528887000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduOne more typo 2018-09-21 07:21:27 -0400f8cd7ebc758d385e6b594a74110b9df750c28ad0One more typoedittest/CMakeLists.txttest/unit/CMakeLists.txttest/CMakeLists.txttest/system/CMakeLists.txt39d2c09b2c0b27b1d9aa6fe6b37ad7d84c44d0b81537530819000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduA slightly different version 2018-09-21 07:53:39 -040039d2c09b2c0b27b1d9aa6fe6b37ad7d84c44d0b8A slightly different versionedittest/CMakeLists.txtedittest/system/CMakeLists.txtedittest/unit/CMakeLists.txttest/unit/CMakeLists.txttest/system/CMakeLists.txt2608407d4adec175f22fcf5122fda4523532664b1537533372000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMinor fix 2018-09-21 08:36:12 -04002608407d4adec175f22fcf5122fda4523532664bMinor fixedittest/unit/CMakeLists.txtedittest/system/CMakeLists.txttest/unit/CMakeLists.txt625782b0b646197cbb89340f9f4832b8a36183b61537538613000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed find and replace mistake 2018-09-21 10:03:33 -0400625782b0b646197cbb89340f9f4832b8a36183b6Fixed find and replace mistakeedittest/unit/CMakeLists.txtsrc/BasisFunction/Quadrature_Cache.hsrc/BasisFunction/BasisFunctionSpacetime_Pentatope.cppsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cppsrc/Quadrature/Quadrature_Simplex_GrundmannMoeller.h7f953daf063e9cafaca805ac57ce09cb7f762f821537549001000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edufixed a few bugs with trace-to-cell ref coordinates 2018-09-21 12:56:41 -04007f953daf063e9cafaca805ac57ce09cb7f762f82fixed a few bugs with trace-to-cell ref coordinateseditsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cppeditsrc/Quadrature/Quadrature_Simplex_GrundmannMoeller.heditsrc/BasisFunction/Quadrature_Cache.heditsrc/BasisFunction/BasisFunctionSpacetime_Pentatope.cpptest/unit/Discretization/Galerkin/ResidualCell_Galerkin_IRS_AD_btest.cpptest/unit/pde/CauchyRiemann/PDECauchyRiemann2D_btest.cpptest/unit/Discretization/HDG/ResidualCell_HDG_HB_AD_btest.cppsrc/pde/PorousMedia/PDEBuckleyLeverett_ArtificialViscosity1D.htest/unit/Discretization/Galerkin/IntegrandCell_Galerkin_AD_btest.cppsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion1D.htest/unit/pde/AdvectionDiffusion/PDEAdvectionDiffusion1D_btest.cppsrc/Discretization/Galerkin/IntegrandCell_Galerkin_HB.hsrc/pde/NS/PDEEulermitAVDiffusion3D.htest/unit/pde/CauchyRiemann/PDECauchyRiemann2D_SurrealD_btest.cppsrc/pde/FullPotential/PDELinearizedIncompressiblePotential3D.htest/unit/Discretization/Galerkin/IntegrandBoundaryTrace_LinearScalar_sansLG_Galerkin_AD_btest.cpptest/unit/Discretization/DG/ResidualBoundaryTrace_Dirichlet_mitState_DGBR2_AD_btest.cppsrc/pde/HSM/PDEHSM2D.htest/unit/Discretization/HDG/IntegrandFunctor_HDG_HB_AD_btest.cpptest/unit/pde/FullPotential/PDELinearizedIncompressiblePotential2D_btest.cpptest/unit/Discretization/Galerkin/IntegrandCell_ProjectFunction_btest.cpptest/unit/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized_AD_btest.cpptest/unit/ErrorEstimate/ErrorEstimateBoundaryTrace_HDG_AD_btest.cpptest/unit/Discretization/DG/ResidualCell_DGAdvective_Euler2D_btest.cpptest/unit/Discretization/Galerkin/IntegrandCell_Galerkin_ShallowWater1D_btest.cppsrc/pde/ShallowWater/PDEShallowWater1D.htest/unit/Discretization/HDG/IntegrandFunctor_HDG_ST_AD_btest.cpptest/unit/Discretization/Galerkin/IntegrandCell_Galerkin_HB_AD_btest.cpptest/unit/ErrorEstimate/AWResidualInteriorTrace_HDG_AD_btest_OFF.cppsrc/pde/NS/PDERANSSA3D.htest/unit/pde/CauchyRiemann/PDECauchyRiemann2D_SurrealS_btest.cpptest/unit/Discretization/HDG/isValidStateInteriorTrace_HDG_Euler_btest.cppsrc/pde/Sensor/PDESensorParameter2D.htest/unit/pde/PorousMedia/PDETwoPhase_ArtificialViscosity2D_btest.cpptest/unit/pde/NDConvert/PDENDConvert1D_AD_btest.cpptest/unit/pde/Sensor/PDESensorParameter1D_btest.cpptest/unit/pde/Burgers/PDEBurgers_ArtificialViscosity1D_btest.cpptest/unit/Discretization/DG/IntegrandCell_DGBR2_AD_btest.cpptest/unit/Discretization/Galerkin/isValidStateInteriorTrace_Euler_btest.cpptest/unit/Discretization/DG/SetFieldInteriorTrace_DGBR2_LiftedQuantity_TwoPhaseAV_btest.cpptest/unit/ErrorEstimate/ErrorEstimateNodal_Galerkin_AD_btest.cppsrc/pde/Burgers/PDEBurgers_ArtificialViscosity2D.htest/unit/Discretization/HDG/IntegrandCell_HDG_NS_btest.cpptest/unit/ErrorEstimate/ErrorEstimateCell_DGBR2_AD_btest.cppsrc/pde/NS/PDENavierStokes2D.hsrc/Discretization/HDG/IntegrandFunctor_HDG_PTC.htest/unit/Discretization/DG/IntegrandBoundaryTrace_Dirichlet_mitState_DGBR2_BuckleyLeverett_btest.cpptest/unit/pde/PorousMedia/PDETwoPhase_ArtificialViscosity1D_btest.cpptest/unit/pde/Sensor/PDESensorParameter2D_btest.cpptest/unit/ErrorEstimate/ErrorEstimateBoundaryTrace_DGBR2_AD_btest.cpptest/unit/ErrorEstimate/ErrorEstimateCell_PrimalStrongForm_Galerkin_AD_btest.cppsrc/pde/NS/PDEEuler2D.htest/unit/Discretization/Galerkin/ResidualCell_Galerkin_HSM2D_btest.cpptest/unit/Discretization/Galerkin/ResidualBoundaryTrace_LinearScalar_mitLG_Galerkin_AD_btest.cpptest/unit/Discretization/DG/IntegrandInteriorTrace_DGBR2_Sensor_btest.cpptest/unit/ErrorEstimate/ErrorEstimateCell_DGBR2_LiftedQuantity_TwoPhaseAV_btest.cpptest/unit/pde/NS/PDEEuler2D_btest.cppsrc/PanelMethod/ProjectionToQauxi_IBL.hsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion3D.htest/unit/Discretization/HDG/IntegrandCell_HDG_AD_btest.cppsrc/pde/PorousMedia/PDETwoPhase1D.htest/unit/Discretization/Galerkin/ResidualCell_Galerkin_AD_btest.cpptest/unit/pde/Distance/PDEEikonal_Distance2D_btest.cppsrc/pde/ArtificialViscosity/PDEmitAVSensor1D.htest/unit/Discretization/Galerkin/ResidualCell_Galerkin_ShallowWater1D_btest.cppsrc/pde/Burgers/PDEBurgers_ArtificialViscosity1D.hsrc/pde/NS/PDENavierStokes1D.htest/unit/Discretization/DG/ResidualCell_DGBR2_AD_btest.cpptest/unit/pde/NS/PDEEulermitAVDiffusion3D_btest.cppsrc/Discretization/Galerkin/IntegrandInteriorTrace_Galerkin_StrongForm.htest/unit/Discretization/Galerkin/IntegrandCell_Galerkin_HSM2D_btest.cpptest/unit/pde/NS/PDERANSSA3D_btest.cpptest/unit/Discretization/Galerkin/ResidualCell_Galerkin_CR_btest.cppsrc/pde/PorousMedia/PDETwoPhase_ArtificialViscosity2D.htest/unit/pde/PorousMedia/PDETwoPhase1D_btest.cpptest/unit/pde/NS/PDENavierStokes3D_btest.cpptest/unit/pde/IBL/PDEIBL2D_btest.cpptest/unit/pde/ShallowWater/PDEShallowWater1D_btest.cppsrc/Discretization/Galerkin/IntegrandCell_Galerkin_PTC.htest/unit/Discretization/DG/IntegrandCell_DGAdvective_Euler2D_btest.cpptest/unit/pde/AdvectionDiffusion/PDEAdvectionDiffusion2D_btest.cpptest/unit/ErrorEstimate/ErrorEstimateInteriorTrace_HDG_AD_btest.cpptest/unit/pde/HSM/PDEHSM2D_btest.cpptest/unit/pde/ArtificialVi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est/unit/pde/ShallowWater/PDEShallowWater2D_manifold_btest.cppsrc/pde/NS/PDEEuler1D.htest/unit/ErrorEstimate/ErrorEstimateBoundaryTrace_Galerkin_AD_btest.cpptest/unit/ErrorEstimate/AWIntegrandBoundaryFunctor_HDG_AD_btest_OFF.cppsrc/pde/IBL/PDEIBL2D.hsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion2D.htest/unit/Discretization/HDG/ResidualInteriorTrace_HDG_AD_btest.cpptest/unit/Discretization/HDG/IntegrandInteriorTrace_HDG_AD_btest.cpptest/unit/Discretization/HDG/ResidualBoundaryTrace_LinearScalar_FieldTrace_HDG_AD_btest_LGOFF.cpptest/unit/Discretization/DG/IntegrandBoundaryTrace_Dirichlet_mitState_DGBR2_AD_btest.cppsrc/pde/ArtificialViscosity/PDEmitAVSensor2D.htest/unit/Discretization/HDG/ResidualCell_HDG_AD_btest.cpptest/unit/ErrorEstimate/ErrorEstimate_Galerkin_AD_btest.cpptest/unit/Discretization/Galerkin/IntegrandInteriorTrace_Galerkin_StrongForm_AD_btest.cpptest/unit/Discretization/DG/ResidualCell_DGBR2_LiftedQuantity_TwoPhaseAV_btest.cppsrc/pde/Burgers/PDEBurgers1D.hsrc/pde/PorousMedia/PDEBuckleyLeverett1D.hsrc/Discretization/HDG/IntegrandFunctor_HDG_HB.hsrc/pde/ShallowWater/PDEShallowWater2D_manifold.hsrc/pde/PorousMedia/PDETwoPhaseLinearized1D.hsrc/pde/ShallowWater/PDEShallowWater2D.htest/unit/Discretization/DG/IntegrandBoundaryTrace_Flux_mitState_DGBR2_AD_btest.cpptest/unit/Discretization/Galerkin/IntegrandCell_Galerkin_PTC_AD_btest.cppsrc/Discretization/Galerkin/IntegrandCell_Galerkin_IRS.ha5a498a3324aa6314c48be56839565effc025f3b1537549642000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduhasFluxConservative is noe hasFluxAdvectiveTime 2018-09-21 13:07:22 -0400a5a498a3324aa6314c48be56839565effc025f3bhasFluxConservative is noe 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and element definitions for pentatopes 2018-09-21 15:51:09 -04009ac32ff2716e5ff0bb79b7608a5a3553e771ba7dxfield and element definitions for pentatopeseditsrc/Field/Element/ReferenceElementMesh.cppeditsrc/Field/Element/ReferenceElementMesh.heditsrc/Field/XFieldTypes.heditsrc/Field/CMakeLists.txtsrc/Field/Element/ElementAssociativitySpacetimeConstructor.cppsrc/Field/FieldBaseSpacetime_Instantiate.cppsrc/Field/FieldSpacetime.hsrc/Field/XFieldSpacetime_Traits.hsrc/Field/Element/ElementXFieldSpacetime_impl.hsrc/Field/FieldGroupSpacetime_Traits.hsrc/Field/Element/ElementXFieldSpacetime_Instantiate_4D.cppsrc/Field/Element/ElementSpacetime.hsrc/Field/Element/ElementAssociativitySpacetime.hsrc/Field/Element/ElementAssociativitySpacetimeConstructor.hsrc/Field/Element/ElementXFieldSpacetime.hsrc/Field/XFieldSpacetime.hb0cff47f85d1a6f33066ec3a319ef2a2b364d04c1537559551000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduspacetime field and element files 2018-09-21 15:52:31 -0400b0cff47f85d1a6f33066ec3a319ef2a2b364d04cspacetime field and element filesaddsrc/Field/Element/ElementAssociativitySpacetimeConstructor.cppaddsrc/Field/Element/ElementSpacetime.haddsrc/Field/Element/ElementAssociativitySpacetimeConstructor.haddsrc/Field/XFieldSpacetime_Traits.haddsrc/Field/Element/ElementAssociativitySpacetime.haddsrc/Field/XFieldSpacetime.haddsrc/Field/Element/ElementXFieldSpacetime_Instantiate_4D.cppaddsrc/Field/FieldBaseSpacetime_Instantiate.cppaddsrc/Field/FieldSpacetime.haddsrc/Field/Element/ElementXFieldSpacetime_impl.haddsrc/Field/Element/ElementXFieldSpacetime.haddsrc/Field/FieldGroupSpacetime_Traits.htest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cpp69b36fa8389c6624e489b91c91b3e5d5db2af4a71537575672000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edutolerance 2018-09-21 20:21:12 -040069b36fa8389c6624e489b91c91b3e5d5db2af4a7toleranceedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cpp218d74e40f5584ad4bddc2bae9f45fb8a987c2281537616591000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edurelaxed again 2018-09-22 07:43:11 -0400218d74e40f5584ad4bddc2bae9f45fb8a987c228relaxed againedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cppsrc/Field/tools/for_each_InteriorTraceGroup_Cell.hsrc/Field/FieldVolume_Instantiate_4D.cppsrc/Field/tools/for_each_CellGroup.hsrc/Quadrature/Quadrature.hsrc/Field/XFieldSpacetime.hsrc/Field/tools/for_each_InteriorFieldTraceGroup.hsrc/Field/tools/for_each_HubTraceGroup.hsrc/Field/CMakeLists.txtsrc/Field/XFieldVolume_Traits.hsrc/Field/FieldSpacetime_Instantiate_4D.cppsrc/Field/XFieldVolume_Instantiate_4D.cppsrc/Field/tools/for_each_BoundaryTraceGroup.hsrc/Field/tools/for_each_InteriorFieldTraceGroup_Cell.h5e0b9ec3a0b7dd914b8c0f65f104ffe3d67a6ce71537624698000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edufield and xfield instantiations in 4d 2018-09-22 09:58:18 -04005e0b9ec3a0b7dd914b8c0f65f104ffe3d67a6ce7field and xfield instantiations in 4deditsrc/Field/tools/for_each_CellGroup.heditsrc/Field/tools/for_each_InteriorFieldTraceGroup_Cell.heditsrc/Quadrature/Quadrature.heditsrc/Field/CMakeLists.txtaddsrc/Field/XFieldVolume_Instantiate_4D.cppeditsrc/Field/tools/for_each_HubTraceGroup.heditsrc/Field/tools/for_each_InteriorTraceGroup_Cell.heditsrc/Field/tools/for_each_InteriorFieldTraceGroup.heditsrc/Field/XFieldSpacetime.haddsrc/Field/FieldSpacetime_Instantiate_4D.cppaddsrc/Field/FieldVolume_Instantiate_4D.cppeditsrc/Field/XFieldVolume_Traits.heditsrc/Field/tools/for_each_BoundaryTraceGroup.hsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cppsrc/BasisFunction/BasisFunctionSpacetime_Pentatope.cppc80b8c2ee3381a0a8b4e1a4544cca44c733c0d3b1537628343000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edumap between quadrature points of different trace orienations (in 4d) check for minimum distance 2018-09-22 10:59:03 -0400c80b8c2ee3381a0a8b4e1a4544cca44c733c0d3bmap between quadrature points of different trace orienations (in 4d) check for minimum distanceeditsrc/BasisFunction/BasisFunctionSpacetime_Pentatope.cppeditsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cpptest/sandbox/Adapt3D_Mesh_Optimizer_toy.cpp107f4dc77183efb72533f0f1405a6cf993d3f5541537629092000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edulingering space 2018-09-22 11:11:32 -0400107f4dc77183efb72533f0f1405a6cf993d3f554lingering spaceedittest/sandbox/Adapt3D_Mesh_Optimizer_toy.cpptest/unit/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange_btest.cppcb0fb98a048d8042abef39e2a98ad11bda7309a91537633833000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduunused variables...dont worry i'll unit test these functions 2018-09-22 12:30:33 -0400cb0fb98a048d8042abef39e2a98ad11bda7309a9unused variables...dont worry i'll unit test these functionsedittest/unit/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange_btest.cppsrc/BasisFunction/BasisFunctionSpacetime_Pentatope.cpp6e949ff9c50f0d7887805e12c05320358003e5ae1537636540000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduuninit fixes 2018-09-22 13:15:40 -04006e949ff9c50f0d7887805e12c05320358003e5aeuninit fixeseditsrc/BasisFunction/BasisFunctionSpacetime_Pentatope.cpptest/sandbox/Solve2D_DGBR2_Euler_Riemann_AV_RK_toy.cpp80610a62ed78a2141fc5f6a2da1ff24e14d4b87e1537730784000https://acdl.mit.edu/csi/user/blscblscblsc@mit.edu2D Riemann problem now uses surrogates 2018-09-23 15:26:24 -040080610a62ed78a2141fc5f6a2da1ff24e14d4b87e2D Riemann problem now uses surrogatesedittest/sandbox/Solve2D_DGBR2_Euler_Riemann_AV_RK_toy.cpptest/unit/UnitGrids/CMakeLists.txttest/unit/UnitGrids/XField2D_Box_Triangle_Ghost_X1.htest/unit/UnitGrids/XField2D_Box_Triangle_X1.cpptest/unit/UnitGrids/XField2D_Box_Triangle_Ghost_X1_btest.cpptest/unit/UnitGrids/XField2D_Box_Triangle_Ghost_X1.cppeb6ffc4bdcc5daa662f1eaf5ca7a5374b4456c901537801657000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduA box grid with two ghost boundaries 2018-09-24 11:07:37 -0400eb6ffc4bdcc5daa662f1eaf5ca7a5374b4456c90A box grid with two ghost boundariesaddtest/unit/UnitGrids/XField2D_Box_Triangle_Ghost_X1_btest.cppedittest/unit/UnitGrids/CMakeLists.txtaddtest/unit/UnitGrids/XField2D_Box_Triangle_Ghost_X1.cppaddtest/unit/UnitGrids/XField2D_Box_Triangle_Ghost_X1.hedittest/unit/UnitGrids/XField2D_Box_Triangle_X1.cpptest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cpptest/unit/UnitGrids/XField2D_Box_Triangle_Ghost_X1.cppsrc/Field/XField_Local_Common.ha3d4d525a1f39ff2f1870ee7338bad7f1f208db21537805644000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduadded split tests with ghost boundaries attached to cell group 1, and made the assert message for cell group 0 a bit more obvious 2018-09-24 12:14:04 -0400a3d4d525a1f39ff2f1870ee7338bad7f1f208db2added split tests with ghost boundaries attached to cell group 1, and made the assert message for cell group 0 a bit more obviousedittest/unit/UnitGrids/XField2D_Box_Triangle_Ghost_X1.cppeditsrc/Field/XField_Local_Common.hedittest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cpptest/unit/UnitGrids/XField2D_Box_Triangle_Ghost_X1_btest.cpp6e3e2886b3908aaa333cec113de73fb40f09339f1537805743000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduduplicate test name 2018-09-24 12:15:43 -04006e3e2886b3908aaa333cec113de73fb40f09339fduplicate test nameedittest/unit/UnitGrids/XField2D_Box_Triangle_Ghost_X1_btest.cppsrc/Meshing/EGADS/EGBody.cppsrc/Meshing/EGADS/EGBody.hsrc/Meshing/EGTess/EGTriangle.cppsrc/Meshing/EGTess/CMakeLists.txtsrc/Meshing/EGADS/EGLoop.cppbb7e832f3df187a5f609d6ab42bb0e6f00f7f06b1537815887000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixes to EGADS loop senses when sense is +/-2 2018-09-24 15:04:47 -0400bb7e832f3df187a5f609d6ab42bb0e6f00f7f06bFixes to EGADS loop senses when sense is +/-2editsrc/Meshing/EGADS/EGBody.cppeditsrc/Meshing/EGADS/EGBody.heditsrc/Meshing/EGTess/EGTriangle.cppeditsrc/Meshing/EGTess/CMakeLists.txteditsrc/Meshing/EGADS/EGLoop.cpptest/unit/Meshing/EGADS/EGBody_btest.cpp5415674805a590c844e4adee49a84c23048fafec1537824694000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduForgot a file 2018-09-24 17:31:34 -04005415674805a590c844e4adee49a84c23048fafecForgot a fileedittest/unit/Meshing/EGADS/EGBody_btest.cpptest/unit/CMakeLists.txtsrc/BasisFunction/BasisFunctionSpacetime_Pentatope.cpptest/CMakeLists.txttest/system/CMakeLists.txt0317c39acae8171a7c0185c96eabd721ac5877fd1537830948000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed array out-of-bounds in Pentatope basis function. Fixed memcheck for nightly testing. 2018-09-24 19:15:48 -04000317c39acae8171a7c0185c96eabd721ac5877fdFixed array out-of-bounds in Pentatope basis function. Fixed memcheck for nightly testing.edittest/CMakeLists.txteditsrc/BasisFunction/BasisFunctionSpacetime_Pentatope.cppedittest/unit/CMakeLists.txtedittest/system/CMakeLists.txtsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixSymS.hsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_NavierStokes3D_PrimitiveConstVisc.cpptest/unit/LinearAlgebra/DenseLinAlg/MatrixS_btest.cppsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized.htest/system/IO/ErrorOrder/ErrorOrder_2D_CGStab_RANSSA_MMS2_FullTest.txtsrc/Adaptation/MOESS/NLOPT/MOESS_PX_Optimizer_NLOPT.cpptest/system/IO/ErrorOrder/ErrorOrder_2D_CGStab_RANSSA_MMS1_FullTest.txtsrc/Meshing/EGTess/EGTriangle.cppsrc/pde/NS/PDENavierStokes3D.hsrc/pde/NS/BCNavierStokes3D_mitState.hsrc/Discretization/CMakeLists.txtsrc/pde/NS/BCNavierStokes3D.hsrc/pde/NS/BCNavierStokes3D.cpptest/unit/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized_AD_btest.cppsrc/pde/NS/PDEEuler3D.hsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_InverseLUP_Surreal_Instantiate.cpptest/unit/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized_NS_btest.cppsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cpptest/unit/LinearAlgebra/DenseLinAlg/MatrixD_btest.cpptest/unit/Discretization/Galerkin/StabilizationMatrix_NS_btest.cppsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_NavierStokes3D_PrimitiveConstVisc.cppsrc/Adaptation/MOESS/NLOPT/MOESS_Gradation_Optimizer_NLOPT.cpptest/unit/Discretization/Galerkin/JacobianCell_Galerkin_Stabilized_NS_btest.cpptest/unit/BasisFunction/BasisFunctionArea_Quad_Lagrange_btest.cppsrc/Field/ElementConnectivityConstructor.htest/unit/pde/NS/BCNavierStokes3D_mitState_btest.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppsrc/Discretization/Galerkin/IntegrandCell_Galerkin_StrongForm.hsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS.htest/unit/pde/NS/PDEEuler3D_btest.cpptest/system/Asymptotic/ErrorEstimateOrder_2D_HDG_Triangle_AD_btest.cppsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.hsrc/Discretization/Galerkin/Stabilization_Galerkin.hsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Output_Stabilized.hsrc/LinearAlgebra/DenseLinAlg/InverseLUP.hsrc/pde/NS/BCNavierStokes2D.hsrc/Meshing/refine/MesherInterface_refine.cppsrc/ErrorEstimate/CMakeLists.txt244f564ce955bda0d83cc412f55da124c7e5de741537875390000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduSpeed improvement for stabilized CG. 3DNS isothermal wall BC. Many other small fixes 2018-09-25 07:36:30 -0400244f564ce955bda0d83cc412f55da124c7e5de74Speed improvement for stabilized CG. 3DNS isothermal wall BC. Many other small fixeseditsrc/LinearAlgebra/DenseLinAlg/InverseLUP.heditsrc/Discretization/Galerkin/Stabilization_Galerkin.hedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppedittest/system/Asymptotic/ErrorEstimateOrder_2D_HDG_Triangle_AD_btest.cppaddsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_NavierStokes3D_PrimitiveConstVisc.cppeditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_StrongForm.heditsrc/pde/NS/BCNavierStokes2D.hedittest/unit/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized_NS_btest.cppeditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Output_Stabilized.hedittest/unit/Discretization/Galerkin/StabilizationMatrix_NS_btest.cppeditsrc/pde/NS/BCNavierStokes3D_mitState.heditsrc/Adaptation/MOESS/NLOPT/MOESS_PX_Optimizer_NLOPT.cppeditsrc/Meshing/EGTess/EGTriangle.cppedittest/unit/pde/NS/PDEEuler3D_btest.cppedittest/unit/Discretization/Galerkin/JacobianCell_Galerkin_Stabilized_NS_btest.cppeditsrc/pde/NS/PDEEuler3D.hedittest/unit/BasisFunction/BasisFunctionArea_Quad_Lagrange_btest.cppeditsrc/Meshing/refine/MesherInterface_refine.cppeditsrc/Discretization/CMakeLists.txtaddsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_NavierStokes3D_PrimitiveConstVisc.cppeditsrc/ErrorEstimate/CMakeLists.txteditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.hedittest/unit/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized_AD_btest.cppeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixSymS.heditsrc/Adaptation/MOESS/NLOPT/MOESS_Gradation_Optimizer_NLOPT.cppedittest/unit/LinearAlgebra/DenseLinAlg/MatrixS_btest.cppeditsrc/pde/NS/BCNavierStokes3D.cppedittest/system/IO/ErrorOrder/ErrorOrder_2D_CGStab_RANSSA_MMS1_FullTest.txtedittest/system/IO/ErrorOrder/ErrorOrder_2D_CGStab_RANSSA_MMS2_FullTest.txteditsrc/Field/ElementConnectivityConstructor.heditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_InverseLUP_Surreal_Instantiate.cppeditsrc/pde/NS/BCNavierStokes3D.hedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppeditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized.hedittest/unit/pde/NS/BCNavierStokes3D_mitState_btest.cppeditsrc/pde/NS/PDENavierStokes3D.hedittest/unit/LinearAlgebra/DenseLinAlg/MatrixD_btest.cppeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS.htest/unit/Discretization/Galerkin/JacobianCell_Galerkin_Stabilized_NS_btest.cppsrc/pde/NS/EulerResidCategory.hsrc/pde/NS/PDEEuler2D.hsrc/pde/NS/PDEEuler3D.hsrc/pde/NS/PDEEuler1D.hf25651b3abb95e499c3f5b33fd9c8cabac951f2f1537889479000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMore robust jacobian check for CG Stabilized NS 2018-09-25 11:31:19 -0400f25651b3abb95e499c3f5b33fd9c8cabac951f2fMore robust jacobian check for CG Stabilized NSeditsrc/pde/NS/PDEEuler1D.haddsrc/pde/NS/EulerResidCategory.heditsrc/pde/NS/PDEEuler3D.heditsrc/pde/NS/PDEEuler2D.hedittest/unit/Discretization/Galerkin/JacobianCell_Galerkin_Stabilized_NS_btest.cppsrc/Adaptation/MOESS/SolverInterface.hc0d3f6af00d769f46ea4d4d7291b3a93085e8b491537891562000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educhanged DOF sharing calculations to correctly use max, and to calculate the 3D sharing, assuming a regular icosahedron about a point 2018-09-25 12:06:02 -0400c0d3f6af00d769f46ea4d4d7291b3a93085e8b49changed DOF sharing calculations to correctly use max, and to calculate the 3D sharing, assuming a regular icosahedron about a pointeditsrc/Adaptation/MOESS/SolverInterface.htest/system/LocalSolve/EdgeLocalSolve2D_Primal_Galerkin_Stabilized_Triangle_AD_btest.cpp1142a87bcd7ea686d3f0a538febb7790ff7d5cd31537892606000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduRelaxed tolerance 2018-09-25 12:23:26 -04001142a87bcd7ea686d3f0a538febb7790ff7d5cd3Relaxed toleranceedittest/system/LocalSolve/EdgeLocalSolve2D_Primal_Galerkin_Stabilized_Triangle_AD_btest.cpptest/sandbox/Adapt1D_DGBR2_Line_Euler_SSMENozzle_toy.cpptest/sandbox/Adapt2D_DGBR2_Euler_GilesPierce_AV_toy.cpptest/sandbox/Adapt1D_DGBR2_Line_Euler_GilesPierce_toy.cpptest/sandbox/Adapt1D_DGBR2_AD_toy.cpp9f6c9b3638a1c83d65e8a2fa788a8f4f639786401537893561000https://acdl.mit.edu/csi/user/ursachiursachiursachi@mit.eduFixed adjoint order error 2018-09-25 12:39:21 -04009f6c9b3638a1c83d65e8a2fa788a8f4f63978640Fixed adjoint order erroredittest/sandbox/Adapt2D_DGBR2_Euler_GilesPierce_AV_toy.cppedittest/sandbox/Adapt1D_DGBR2_Line_Euler_SSMENozzle_toy.cppedittest/sandbox/Adapt1D_DGBR2_Line_Euler_GilesPierce_toy.cppdeletetest/sandbox/Adapt1D_DGBR2_AD_toy.cpptest/system/Adaptation/SolverInterface_DGAdvective_btest.cpptest/system/Adaptation/SolverInterface_DGBR2_btest.cppe9db362750ac5551c5c41f63df316eedc61bb6d31537893593000https://acdl.mit.edu/csi/user/ursachiursachiursachi@mit.eduCheck if error estimates are the same after several iterations 2018-09-25 12:39:53 -0400e9db362750ac5551c5c41f63df316eedc61bb6d3Check if error estimates are the same after several iterationsedittest/system/Adaptation/SolverInterface_DGBR2_btest.cppedittest/system/Adaptation/SolverInterface_DGAdvective_btest.cpptest/system/Asymptotic/ErrorEstimateOrder_2D_DGAdvective_Triangle_AD_btest.cpptest/system/IO/ErrorEstimates/ErrorEst_2D_DGAdvective_AD_FullTest.txttest/system/IO/ErrorEstimates/ErrorEst_2D_DGAdvective_AD_MinTest.txtdbdfddaf268cd37e61ed831397606180ab48c76b1537893739000https://acdl.mit.edu/csi/user/ursachiursachiursachi@mit.edu2D DGAdv error estimate order test 2018-09-25 12:42:19 -0400dbdfddaf268cd37e61ed831397606180ab48c76b2D DGAdv error estimate order testedittest/system/IO/ErrorEstimates/ErrorEst_2D_DGAdvective_AD_MinTest.txtedittest/system/Asymptotic/ErrorEstimateOrder_2D_DGAdvective_Triangle_AD_btest.cppedittest/system/IO/ErrorEstimates/ErrorEst_2D_DGAdvective_AD_FullTest.txtsrc/Field/XFieldVolume_EdgeLocal.cppsrc/Field/XField_Local_Common_Instantiate_3D.cpptest/unit/Field/XField3D_EdgeLocal_Dual_Split_btest.cpp0aa240bfd301be62803b0a26d0f3144577c371731537902291000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumoved the hard work split method into the common instantiation 2018-09-25 15:04:51 -04000aa240bfd301be62803b0a26d0f3144577c37173moved the hard work split method into the common instantiationeditsrc/Field/XFieldVolume_EdgeLocal.cppeditsrc/Field/XField_Local_Common_Instantiate_3D.cppedittest/unit/Field/XField3D_EdgeLocal_Dual_Split_btest.cppsrc/Field/XField_Local_Common_Instantiate_2D.cppsrc/Field/XFieldVolume_ElementLocal.cppsrc/Field/XField_Local_Common_Instantiate_3D.cpp2d40d1b7699b0c446a343f0c44ae3e98ea3ef3071537905446000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edufixing up the 3D logic a little bit, the edge local still works, need to test the element dual now 2018-09-25 15:57:26 -04002d40d1b7699b0c446a343f0c44ae3e98ea3ef307fixing up the 3D logic a little bit, the edge local still works, need to test the element dual noweditsrc/Field/XFieldVolume_ElementLocal.cppeditsrc/Field/XField_Local_Common_Instantiate_3D.cppeditsrc/Field/XField_Local_Common_Instantiate_2D.cpptest/unit/Field/XField3D_ElementLocal_Dual_btest.cppc5e897a16d8e8ff0adc81712f0476a628480da451537907558000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduunsplit element dual tests 2018-09-25 16:32:38 -0400c5e897a16d8e8ff0adc81712f0476a628480da45unsplit element dual testsaddtest/unit/Field/XField3D_ElementLocal_Dual_btest.cppsrc/pde/NS/Q3DPrimitiveRhoPressure.hsrc/pde/NS/PDENavierStokes3D.hsrc/pde/NS/PDEEuler3D.h66f260309ab1656a0cea4bacd0ec1d66ed8a457d1537908181000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed warnings 2018-09-25 16:43:01 -040066f260309ab1656a0cea4bacd0ec1d66ed8a457dFixed warningseditsrc/pde/NS/PDENavierStokes3D.heditsrc/pde/NS/PDEEuler3D.heditsrc/pde/NS/Q3DPrimitiveRhoPressure.htest/unit/Field/XField3D_ElementLocal_Dual_Split_btest.cpp1f4a788336e4703cb83dc480ce5acbd33e7fa6321537909283000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edufirst, extremely basic split test 2018-09-25 17:01:23 -04001f4a788336e4703cb83dc480ce5acbd33e7fa632first, extremely basic split testaddtest/unit/Field/XField3D_ElementLocal_Dual_Split_btest.cpptest/unit/Field/XField3D_ElementLocal_Dual_Split_btest.cpptest/unit/Field/XField3D_ElementLocal_Dual_btest.cpp05be65f2e70ca9d8458f984263f316045426146a1537914234000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduanother simple split test, now with reattaching boundary groups attached to cell group 1 2018-09-25 18:23:54 -040005be65f2e70ca9d8458f984263f316045426146aanother simple split test, now with reattaching boundary groups attached to cell group 1edittest/unit/Field/XField3D_ElementLocal_Dual_Split_btest.cppedittest/unit/Field/XField3D_ElementLocal_Dual_btest.cpptest/unit/Field/XField3D_ElementLocal_Dual_Split_btest.cpptest/unit/Field/XField3D_ElementLocal_Dual_btest.cpp58cee918d49d4f83fd149a1d11e7f66f45115c781537915147000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduduplicate named tests 2018-09-25 18:39:07 -040058cee918d49d4f83fd149a1d11e7f66f45115c78duplicate named testsedittest/unit/Field/XField3D_ElementLocal_Dual_btest.cppedittest/unit/Field/XField3D_ElementLocal_Dual_Split_btest.cpptest/unit/Field/Field2D_ElementLocal_Dual_CG_btest.cpp536180bd1df0fb3eca2d4af884b931245024298f1537922265000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edusome tests for ElementDual Solution transfer, no surprises 2018-09-25 20:37:45 -0400536180bd1df0fb3eca2d4af884b931245024298fsome tests for ElementDual Solution transfer, no surprisesaddtest/unit/Field/Field2D_ElementLocal_Dual_CG_btest.cpptest/unit/Field/Field2D_ElementLocal_Dual_CG_btest.cppfb50556909d98057b54ba24f2c6c3a6cbc3a11f81537922666000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduduplicate test names 2018-09-25 20:44:26 -0400fb50556909d98057b54ba24f2c6c3a6cbc3a11f8duplicate test namesedittest/unit/Field/Field2D_ElementLocal_Dual_CG_btest.cppsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_backsolve.hsrc/LinearAlgebra/AlgebraicEquationSetBase.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_CRS_double.cppsrc/SolutionTrek/Continuation/Homotopy/AlgebraicEquationSet_HTC.hsrc/SolutionTrek/Continuation/PseudoTime/AlgebraicEquationSet_PTC.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized_LiftedBoundary.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_4x4_Instantiate.cppsrc/Discretization/HDG/AlgebraicEquationSet_HDG.hsrc/SolutionTrek/TimeMarching/AlgebraicEquationSet_TimeMarch.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_backsolve.hsrc/Discretization/Potential_Drela/AlgebraicEquationSet_CG_Potential_Drela.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_3x3_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver.htest/unit/LinearAlgebra/Advection1D_btest.htest/unit/LinearAlgebra/CustomJacobianEqSet_btest.hsrc/LinearAlgebra/SparseLinAlg/LinearSolverBase.hsrc/Discretization/DG/AlgebraicEquationSet_DGBR2_impl.hsrc/SolutionTrek/TimeMarching/AlgebraicEquationSet_TimeStep.hsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_backsolve.hsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective_impl.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_Instantiate.cpptest/unit/NonLinearSolver/ScalarGoldenSearchLineUpdate_btest.cppsrc/Discretization/Galerkin/AlgebraicEquationSet_Project.hsrc/SolutionTrek/Continuation/ImplicitResidualSmoothing/AlgebraicEquationSet_IRS.hsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_CRS_double.cppsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver.cpptest/unit/NonLinearSolver/HalvingSearchLineUpdate_btest.cppsrc/LinearAlgebra/SparseLinAlg/SparseLinAlg_LinearSolver.hsrc/Discretization/DG/AlgebraicEquationSet_DGBR2.hsrc/NonLinearSolver/NewtonSolver_impl.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized.hsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_CRS_MatrixD.cppsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_impl.hsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.hsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_CRS_double.cppsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_CRS_MatrixD.cppsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixS_Instantiate.cpptest/unit/LinearAlgebra/Heat1D_btest.htest/unit/NonLinearSolver/NewtonSolver_btest.cppsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver.hsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_factorize.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin.hsrc/SolutionTrek/Continuation/DissipationBased/AlgebraicEquationSet_DBC.hsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective.h2ac529a36379730a773d83e02260cde54c8f22ab1537930270000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduReworkd DOF sync so Newton syncs zombies. Linear solver timings 2018-09-25 22:51:10 -04002ac529a36379730a773d83e02260cde54c8f22abReworkd DOF sync so Newton syncs zombies. Linear solver timingseditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver.heditsrc/LinearAlgebra/AlgebraicEquationSetBase.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin.heditsrc/Discretization/HDG/AlgebraicEquationSet_HDG.heditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_impl.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized_LiftedBoundary.heditsrc/LinearAlgebra/SparseLinAlg/LinearSolverBase.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_backsolve.heditsrc/NonLinearSolver/NewtonSolver_impl.heditsrc/SolutionTrek/Continuation/DissipationBased/AlgebraicEquationSet_DBC.heditsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective.heditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_CRS_double.cppedittest/unit/LinearAlgebra/Heat1D_btest.heditsrc/SolutionTrek/Continuation/ImplicitResidualSmoothing/AlgebraicEquationSet_IRS.heditsrc/SolutionTrek/TimeMarching/AlgebraicEquationSet_TimeMarch.hedittest/unit/LinearAlgebra/CustomJacobianEqSet_btest.heditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_factorize.heditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_CRS_MatrixD.cppeditsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixS_Instantiate.cppeditsrc/SolutionTrek/TimeMarching/AlgebraicEquationSet_TimeStep.heditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_backsolve.heditsrc/Discretization/Potential_Drela/AlgebraicEquationSet_CG_Potential_Drela.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_4x4_Instantiate.cppedittest/unit/NonLinearSolver/NewtonSolver_btest.cppeditsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized.hedittest/unit/LinearAlgebra/Advection1D_btest.heditsrc/Discretization/DG/AlgebraicEquationSet_DGBR2.hedittest/unit/NonLinearSolver/HalvingSearchLineUpdate_btest.cppeditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_CRS_double.cppeditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_backsolve.heditsrc/Discretization/DG/AlgebraicEquationSet_DGBR2_impl.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_2x2_Instantiate.cppeditsrc/SolutionTrek/Continuation/Homotopy/AlgebraicEquationSet_HTC.heditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_CRS_double.cppeditsrc/SolutionTrek/Continuation/PseudoTime/AlgebraicEquationSet_PTC.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_3x3_Instantiate.cppeditsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective_impl.heditsrc/LinearAlgebra/SparseLinAlg/SparseLinAlg_LinearSolver.hedittest/unit/NonLinearSolver/ScalarGoldenSearchLineUpdate_btest.cppeditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_CRS_MatrixD.cppeditsrc/Discretization/Galerkin/AlgebraicEquationSet_Project.heditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver.cppsrc/SolutionTrek/Continuation/ImplicitResidualSmoothing/AlgebraicEquationSet_IRS.hsrc/SolutionTrek/HarmonicBalance/AlgebraicEquationSet_HarmonicBalance.h4295299905fa6f9d1286048107e096564090d2c71537960858000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMissed one 2018-09-26 07:20:58 -04004295299905fa6f9d1286048107e096564090d2c7Missed oneeditsrc/SolutionTrek/Continuation/ImplicitResidualSmoothing/AlgebraicEquationSet_IRS.heditsrc/SolutionTrek/HarmonicBalance/AlgebraicEquationSet_HarmonicBalance.hsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver.hc89e874a345d98943114c94d48d20e59d591e76a1537962123000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduForgot to add timing variable for MKL_PARDISO 2018-09-26 07:42:03 -0400c89e874a345d98943114c94d48d20e59d591e76aForgot to add timing variable for MKL_PARDISOeditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver.hsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_impl.h3f2c020b4b6116ca3f1a248d0547819470563c2c1537962312000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduCopy pasta 2018-09-26 07:45:12 -04003f2c020b4b6116ca3f1a248d0547819470563c2cCopy pastaeditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_impl.hsrc/pde/AnalyticFunction/ScalarFunction3D.cppsrc/pde/AnalyticFunction/ScalarFunction2D.cppsrc/pde/AnalyticFunction/ScalarFunction2D.hsrc/pde/AnalyticFunction/ScalarFunction3D.hfb4e843a65c94c7c70280ee23b05d0ebd953f60e1537967699000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduadded scaling and offest to TripleBL and changed naming convention to match between 2D and 3D 2018-09-26 09:14:59 -0400fb4e843a65c94c7c70280ee23b05d0ebd953f60eadded scaling and offest to TripleBL and changed naming convention to match between 2D and 3Deditsrc/pde/AnalyticFunction/ScalarFunction2D.cppeditsrc/pde/AnalyticFunction/ScalarFunction3D.cppeditsrc/pde/AnalyticFunction/ScalarFunction2D.heditsrc/pde/AnalyticFunction/ScalarFunction3D.htest/unit/IO/pde/ScalarFunction2D_pattern.txtb183cdd421a50b21fc45c4fff3fd762706e4ef861537967719000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduforgot the pattern update 2018-09-26 09:15:19 -0400b183cdd421a50b21fc45c4fff3fd762706e4ef86forgot the pattern updateedittest/unit/IO/pde/ScalarFunction2D_pattern.txtsrc/ErrorEstimate/DG/ErrorEstimate_DGBR2_impl.htest/unit/Discretization/Galerkin/IntegrandBoundaryTrace_Output_Galerkin_btest.cppsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_Decompose_LUP.htest/unit/Discretization/Galerkin/JacobianFunctionalBoundaryTrace_WeightedResidual_Galerkin_btest.cppsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.hsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_Decompose_LUP_impl.hsrc/ErrorEstimate/DG/ErrorEstimate_DGBR2.hsrc/Discretization/Block/AlgebraicEquationSet_Block4x4.htest/unit/Discretization/DG/FunctionalBoundaryTrace_DGBR2_btest.cppCMakeLists.txttest/system/LocalSolve/ElementLocalSolve2D_DGBR2_Triangle_AD_btest.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AR_btest.cppsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_Inverse.htest/unit/Field/Field1D_EdgeLocal_Primal_DGBR2_btest.cpptest/system/LocalSolve/EdgeLocalSolve1D_Primal_DGBR2_Line_AD_btest.cpptest/sandbox/Solve2D_CG_NACABTE_IPTF_toy.cppsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.cppsrc/Discretization/Block/AlgebraicEquationSet_Block2x2.htest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cpptest/sandbox/Solve2D_CG_NACA_LIP_toy.cpptest/sandbox/Solve2D_CG_NACA_IPTF_linearsolve_toy.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_Euler_btest.cpptest/system/Asymptotic/ErrorEstimateOrder_2D_HDG_Triangle_AD_btest.cppsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.htest/unit/Discretization/DG/JacobianFunctionalBoundaryTrace_DGBR2_btest.cpptest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cpptest/unit/Discretization/Galerkin/IntegrandBoundaryTrace_Flux_mitState_Nitsche_AD_btest.cpptest/unit/Discretization/Galerkin/FunctionalBoundaryTrace_Dispatch_Galerkin_AD_btest.cpptest/unit/Discretization/Galerkin/IntegrandBoundaryTrace_Dirichlet_mitState_Galerkin_Euler_btest.cppsrc/LinearAlgebra/AlgebraicEquationSetBase.hCMakeInclude/CompilerFlags.cmakesrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_Decompose_LU.hsrc/Discretization/Galerkin/JacobianFunctionalBoundaryTrace_WeightedResidual_Galerkin.htest/unit/Field/Field2D_ElementLocal_Dual_CG_btest.cpptest/system/LocalSolve/ElementLocalSolve3D_DGBR2_Tet_AD_btest.cpptest/unit/Field/Field1D_EdgeLocal_Dual_CG_btest.cppsrc/PanelMethod/XfoilPanelEquationSet.hCMakeInclude/Builds/BuildPETSC.cmaketest/system/LocalSolve/EdgeLocalSolve1D_Dual_Galerkin_Stabilized_Line_AD_btest.cpptest/unit/NonLinearSolver/HalvingSearchLineUpdate_btest.cppsrc/Discretization/FV_TPFA/AlgebraicEquationSet_FV_TPFA.hsrc/Discretization/DG/AlgebraicEquationSet_TransitionIBL.htest/system/LocalSolve/ElementLocalSolve3D_DGAdvective_Tet_AD_btest.cppCMakeInclude/StaticAnalysis.cmaketest/sandbox/Solve2D_CG_NACA_IPTF_toy.cpptest/system/LocalSolve/EdgeLocalSolve2D_Primal_DGBR2_Triangle_AD_btest.cppsrc/Discretization/Galerkin/Stabilization_Galerkin.htest/unit/Discretization/Galerkin/FunctionalBoundaryTrace_WeightedResidual_Galerkin_btest.cppsrc/ErrorEstimate/CMakeLists.txt52c3bd675f6bddcc4b4aa3cc889df8c3f61073de1537991812000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduNew parallel unit tests. Ghost/Zombie DOFs synced in Newton. PETSc build in external. Many small fixes. 2018-09-26 15:56:52 -040052c3bd675f6bddcc4b4aa3cc889df8c3f61073deNew parallel unit tests. Ghost/Zombie DOFs synced in Newton. PETSc build in external. Many small fixes.addsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.cppeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_Inverse.hedittest/unit/Field/Field1D_EdgeLocal_Dual_CG_btest.cppedittest/unit/NonLinearSolver/HalvingSearchLineUpdate_btest.cppedittest/unit/Field/Field2D_ElementLocal_Dual_CG_btest.cppedittest/unit/Discretization/Galerkin/IntegrandBoundaryTrace_Output_Galerkin_btest.cppedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_Euler_btest.cppedittest/system/LocalSolve/EdgeLocalSolve2D_Primal_DGBR2_Triangle_AD_btest.cppeditsrc/Discretization/Block/AlgebraicEquationSet_Block2x2.haddtest/unit/Discretization/Galerkin/FunctionalBoundaryTrace_WeightedResidual_Galerkin_btest.cppeditCMakeInclude/Builds/BuildPETSC.cmakeeditsrc/ErrorEstimate/CMakeLists.txteditsrc/Discretization/Block/AlgebraicEquationSet_Block4x4.hedittest/system/Asymptotic/ErrorEstimateOrder_2D_HDG_Triangle_AD_btest.cppedittest/unit/Discretization/Galerkin/IntegrandBoundaryTrace_Flux_mitState_Nitsche_AD_btest.cppedittest/unit/Field/Field1D_EdgeLocal_Primal_DGBR2_btest.cppedittest/sandbox/Solve2D_CG_NACA_IPTF_toy.cppedittest/system/LocalSolve/EdgeLocalSolve1D_Primal_DGBR2_Line_AD_btest.cppeditsrc/LinearAlgebra/AlgebraicEquationSetBase.hedittest/unit/Discretization/DG/FunctionalBoundaryTrace_DGBR2_btest.cppeditsrc/ErrorEstimate/DG/ErrorEstimate_DGBR2_impl.heditsrc/Discretization/Galerkin/Stabilization_Galerkin.heditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.heditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_Decompose_LUP_impl.heditsrc/Discretization/Galerkin/JacobianFunctionalBoundaryTrace_WeightedResidual_Galerkin.heditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.hedittest/unit/Discretization/Galerkin/FunctionalBoundaryTrace_Dispatch_Galerkin_AD_btest.cppeditsrc/ErrorEstimate/DG/ErrorEstimate_DGBR2.hedittest/system/LocalSolve/ElementLocalSolve2D_DGBR2_Triangle_AD_btest.cppedittest/system/LocalSolve/ElementLocalSolve3D_DGAdvective_Tet_AD_btest.cppeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_Decompose_LUP.hedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AR_btest.cppeditsrc/Discretization/FV_TPFA/AlgebraicEquationSet_FV_TPFA.hedittest/sandbox/Solve2D_CG_NACA_LIP_toy.cppeditsrc/Discretization/DG/AlgebraicEquationSet_TransitionIBL.hedittest/sandbox/Solve2D_CG_NACA_IPTF_linearsolve_toy.cppedittest/unit/Discretization/Galerkin/IntegrandBoundaryTrace_Dirichlet_mitState_Galerkin_Euler_btest.cppeditsrc/PanelMethod/XfoilPanelEquationSet.hedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppedittest/sandbox/Solve2D_CG_NACABTE_IPTF_toy.cppedittest/unit/Discretization/DG/JacobianFunctionalBoundaryTrace_DGBR2_btest.cppeditCMakeLists.txteditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_Decompose_LU.hedittest/unit/Discretization/Galerkin/JacobianFunctionalBoundaryTrace_WeightedResidual_Galerkin_btest.cppeditCMakeInclude/StaticAnalysis.cmakeedittest/system/LocalSolve/EdgeLocalSolve1D_Dual_Galerkin_Stabilized_Line_AD_btest.cppedittest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cppeditCMakeInclude/CompilerFlags.cmakeedittest/system/LocalSolve/ElementLocalSolve3D_DGBR2_Tet_AD_btest.cppsrc/pde/NDConvert/PDENDConvertSpace2D.hsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion3D.hsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion3D.cppsrc/Field/XField_ElementLocal_impl.hsrc/pde/NDConvert/PDENDConvertSpace3D.h34bc1544b448c5a3d75e56e46edb681d9e0687f81537995258000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduvarious changes to get 3D adapting 2018-09-26 16:54:18 -040034bc1544b448c5a3d75e56e46edb681d9e0687f8various changes to get 3D adaptingeditsrc/pde/NDConvert/PDENDConvertSpace3D.heditsrc/Field/XField_ElementLocal_impl.heditsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion3D.heditsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion3D.cppeditsrc/pde/NDConvert/PDENDConvertSpace2D.htest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cpptest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppsrc/Adaptation/MOESS/SolverInterface.h5d6c6ebe2efd4eb43858f304d5a0959e371bc0401537995283000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edua 3D CG adaptation! 2018-09-26 16:54:43 -04005d6c6ebe2efd4eb43858f304d5a0959e371bc040a 3D CG adaptation!editsrc/Adaptation/MOESS/SolverInterface.hedittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppaddtest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cpptest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cpptest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cpp1c8585a881a5b2d4718271cbb529381a809bef731538001699000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educhanges to 3D case to run on hypersonic 2018-09-26 18:41:39 -04001c8585a881a5b2d4718271cbb529381a809bef73changes to 3D case to run on hypersonicedittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppedittest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppsrc/ErrorEstimate/ErrorEstimate_Common.h6c12849b0003af191212aed03a4d525b34501ed81538004272000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMissing include 2018-09-26 19:24:32 -04006c12849b0003af191212aed03a4d525b34501ed8Missing includeeditsrc/ErrorEstimate/ErrorEstimate_Common.htest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppde8a76e973a54ef7212481bfcba58ee1df6d49dd1538004993000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduto run a big case 2018-09-26 19:36:33 -0400de8a76e973a54ef7212481bfcba58ee1df6d49ddto run a big caseedittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppsrc/Meshing/EGTess/EGTessModel_aflr4.cpp0c0b0f8ce594134eda20d1737b6be7944579dd891538008899000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdates for latest AFLR patches 2018-09-26 20:41:39 -04000c0b0f8ce594134eda20d1737b6be7944579dd89Updates for latest AFLR patcheseditsrc/Meshing/EGTess/EGTessModel_aflr4.cppscripts/jenkins/jenkins_env.shee8eee10f000aced55279ceee264faa54fefd93d1538047466000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduCustom build of gcc 8.2 2018-09-27 07:24:26 -0400ee8eee10f000aced55279ceee264faa54fefd93dCustom build of gcc 8.2editscripts/jenkins/jenkins_env.shscripts/jenkins/jenkins_env.sh7e2ac0b7c24196b5013b99cec08810628f1e9b361538052926000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduJenkims env fix for gcc8 2018-09-27 08:55:26 -04007e2ac0b7c24196b5013b99cec08810628f1e9b36Jenkims env fix for gcc8editscripts/jenkins/jenkins_env.shtest/unit/SolutionTrek/TimeMarching/RK_btest.cpp9d9618aa4b657c985cbdde98cfcc5ea0e4cbf15c1538056505000https://acdl.mit.edu/csi/user/eam5515eam5515eam5515@psu.eduAdding new RK unit test 2018-09-27 09:55:05 -04009d9618aa4b657c985cbdde98cfcc5ea0e4cbf15cAdding new RK unit testedittest/unit/SolutionTrek/TimeMarching/RK_btest.cpptest/unit/SolutionTrek/TimeMarching/CMakeLists.txttest/unit/SolutionTrek/TimeMarching/RK_btest.cppb8f4cd171d19b96ae44ca4eb144a6bcd9d979b761538066126000https://acdl.mit.edu/csi/user/eam5515eam5515eam5515@psu.eduAdding Complete RK unit test and new CMake list 2018-09-27 12:35:26 -0400b8f4cd171d19b96ae44ca4eb144a6bcd9d979b76Adding Complete RK unit test and new CMake listedittest/unit/SolutionTrek/TimeMarching/CMakeLists.txtedittest/unit/SolutionTrek/TimeMarching/RK_btest.cppsrc/Meshing/EGTess/EGTessModel_aflr4.cppsrc/Meshing/EGTess/CMakeLists.txtaebea692d53c3c5be7cf72803d3f585c477ab7a51538076289000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAFLR4 now works. Need new library release. 2018-09-27 15:24:49 -0400aebea692d53c3c5be7cf72803d3f585c477ab7a5AFLR4 now works. Need new library release.editsrc/Meshing/EGTess/EGTessModel_aflr4.cppeditsrc/Meshing/EGTess/CMakeLists.txttest/unit/SolutionTrek/TimeMarching/CMakeLists.txttest/unit/SolutionTrek/TimeMarching/RK_btest.cpp62e5b02673b4deb037b0901ce9fce122954c82981538076324000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduCleanup RK Parallel Serial test. Have not found the bug yet. 2018-09-27 15:25:24 -040062e5b02673b4deb037b0901ce9fce122954c8298Cleanup RK Parallel Serial test. Have not found the bug yet.edittest/unit/SolutionTrek/TimeMarching/CMakeLists.txtedittest/unit/SolutionTrek/TimeMarching/RK_btest.cpptest/unit/SolutionTrek/TimeMarching/CMakeLists.txtsrc/SolutionTrek/TimeMarching/AlgebraicEquationSet_TimeStep.hsrc/Discretization/Galerkin/JacobianCell_Galerkin.htest/unit/SolutionTrek/TimeMarching/RK_btest.cpp45059e570dfa29452dabfe4ae125b899686fd8d41538086363000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixes so RK works with new parallel paritioning 2018-09-27 18:12:43 -040045059e570dfa29452dabfe4ae125b899686fd8d4Fixes so RK works with new parallel paritioningedittest/unit/SolutionTrek/TimeMarching/CMakeLists.txteditsrc/Discretization/Galerkin/JacobianCell_Galerkin.hedittest/unit/SolutionTrek/TimeMarching/RK_btest.cppeditsrc/SolutionTrek/TimeMarching/AlgebraicEquationSet_TimeStep.hsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized.hCMakeInclude/Vera.cmakeb1b5be4350159004d16b03ffd00eadd9cf9284891538087197000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAssert Galerkin Stabilized PDE fluxViscousLinearInGradient. Add CMake option VERA_ERROR. 2018-09-27 18:26:37 -0400b1b5be4350159004d16b03ffd00eadd9cf928489Assert Galerkin Stabilized PDE fluxViscousLinearInGradient. Add CMake option VERA_ERROR.editCMakeInclude/Vera.cmakeeditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized.htest/unit/Field/XField2D_EdgeLocal_Dual_WholeGrids_btest.cppsrc/Field/XField_Local_Common_Instantiate_3D.cpptest/unit/Field/XField3D_ElementLocal_Dual_WholeGrids_btest.cppsrc/Adaptation/MOESS/ErrorModel.cpptest/unit/Field/XField2D_ElementLocal_Dual_WholeGrids_btest.cpptest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppsrc/Field/XFieldVolume_checkGrid_impl.htest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppsrc/Field/XFieldVolume_ElementLocal.cppeede71624d8d7b72874cb481923405bebef78e301538089873000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educommiting a bunch of non-working tests and the 3D CG case. 2018-09-27 19:11:13 -0400eede71624d8d7b72874cb481923405bebef78e30commiting a bunch of non-working tests and the 3D CG case.editsrc/Field/XFieldVolume_ElementLocal.cppedittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppeditsrc/Field/XField_Local_Common_Instantiate_3D.cppeditsrc/Adaptation/MOESS/ErrorModel.cppaddtest/unit/Field/XField3D_ElementLocal_Dual_WholeGrids_btest.cppeditsrc/Field/XFieldVolume_checkGrid_impl.haddtest/unit/Field/XField2D_EdgeLocal_Dual_WholeGrids_btest.cppaddtest/unit/Field/XField2D_ElementLocal_Dual_WholeGrids_btest.cppedittest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppsrc/Meshing/EGTess/EGTessModel_aflr4.cppcdbcb3792b6dc83aaae8df0640e225636f217c2b1538100682000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMore updates for AFLR4 2018-09-27 22:11:22 -0400cdbcb3792b6dc83aaae8df0640e225636f217c2bMore updates for AFLR4editsrc/Meshing/EGTess/EGTessModel_aflr4.cppsrc/Field/Field_CG_CellConstructor.cppsrc/Field/Element/UniqueElem.htest/unit/pde/ShallowWater/ShallowWaterSolution2D_btest.cppsrc/Field/Element/UniqueElem.cppsrc/Field/Field_CG_Topology.cpptest/unit/pde/NS/GasModel_SurrealS1_btest.cppff5e7229a21ffa404495da58ecf41a49870a24481538193449000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduCG Field constructor minor speed improvements. Nightly tolerances. 2018-09-28 23:57:29 -0400ff5e7229a21ffa404495da58ecf41a49870a2448CG Field constructor minor speed improvements. Nightly tolerances.editsrc/Field/Field_CG_Topology.cppedittest/unit/pde/NS/GasModel_SurrealS1_btest.cppedittest/unit/pde/ShallowWater/ShallowWaterSolution2D_btest.cppeditsrc/Field/Field_CG_CellConstructor.cppeditsrc/Field/Element/UniqueElem.heditsrc/Field/Element/UniqueElem.cppsrc/ErrorEstimate/ErrorEstimate_Common.hsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.hsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.hdae23cd1980bede9437a5866b6e9c1fbc250bd271538230272000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edurefactor to remove additional unneeded fields, should reduce the constructor destructor costs associated with ErrorEstimate 2018-09-29 10:11:12 -0400dae23cd1980bede9437a5866b6e9c1fbc250bd27refactor to remove additional unneeded fields, should reduce the constructor destructor costs associated with ErrorEstimateeditsrc/ErrorEstimate/ErrorEstimate_Common.heditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.heditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.hsrc/Field/Field_CG_TraceConstructor.cppsrc/Field/Field_CG_CellConstructor.cppsrc/Field/Field_CG_Topology.hsrc/Field/Field_CG_Topology.cpp5c7cd65074da6f1d345bcae037119d24f2dff7281538258066000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduImproved the speed of CG Field constructors. Should help local solves. 2018-09-29 17:54:26 -04005c7cd65074da6f1d345bcae037119d24f2dff728Improved the speed of CG Field constructors. Should help local solves.editsrc/Field/Field_CG_CellConstructor.cppeditsrc/Field/Field_CG_Topology.heditsrc/Field/Field_CG_Topology.cppeditsrc/Field/Field_CG_TraceConstructor.cppsrc/Field/Field_CG_TraceConstructor.cppsrc/Field/Field_CG_CellConstructor.cpp25caf7b7c6c6e2c73349446f4b3176b2f4a219251538259134000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMinor fixes 2018-09-29 18:12:14 -040025caf7b7c6c6e2c73349446f4b3176b2f4a21925Minor fixeseditsrc/Field/Field_CG_TraceConstructor.cppeditsrc/Field/Field_CG_CellConstructor.cppscripts/jenkins/jenkins_env.sh76453f65deb68ae7c2ea5d5527b49a719761f3431538324501000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpgraded cppcheck on reynolds 2018-09-30 12:21:41 -040076453f65deb68ae7c2ea5d5527b49a719761f343Upgraded cppcheck on reynoldseditscripts/jenkins/jenkins_env.shsrc/ErrorEstimate/Galerkin/ErrorEstimateCell_Galerkin.hsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.hsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.hfe160bc60d197c558fa620d7c380502b312bf74b1538328901000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduA few more minor speed improvements to Galerkin error estimates. 2018-09-30 13:35:01 -0400fe160bc60d197c558fa620d7c380502b312bf74bA few more minor speed improvements to Galerkin error estimates.editsrc/ErrorEstimate/Galerkin/ErrorEstimateCell_Galerkin.heditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.heditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodal_Galerkin.hCMakeInclude/CompilerFlags.cmakesrc/Meshing/EGTess/XFieldDomain_impl.htest/sandbox/Adapt2D_Mesh_Optimizer_toy.cppsrc/Meshing/avro/MesherInterface_avro.cppsrc/Meshing/EGTess/XFieldDomain.cppsrc/Meshing/avro/CMakeLists.txttest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppsrc/Meshing/EGTess/XFieldDomain.hsrc/Meshing/avro/MesherInterface_avro.h4eec8e6745b7976578d7f6218fd650fea4a37a1c1538332899000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduxfielddomain fixes for avro api changes 2018-09-30 14:41:39 -04004eec8e6745b7976578d7f6218fd650fea4a37a1cxfielddomain fixes for avro api changeseditCMakeInclude/CompilerFlags.cmakeeditsrc/Meshing/avro/CMakeLists.txteditsrc/Meshing/EGTess/XFieldDomain_impl.heditsrc/Meshing/EGTess/XFieldDomain.cppeditsrc/Meshing/EGTess/XFieldDomain.heditsrc/Meshing/avro/MesherInterface_avro.heditsrc/Meshing/avro/MesherInterface_avro.cppedittest/sandbox/Adapt2D_Mesh_Optimizer_toy.cppedittest/sandbox/Adapt3D_Mesh_Optimizer_toy.cpptest/unit/Meshing/avro/MesherInterface_avro_btest.cpptest/unit/Meshing/EGTess/XFieldDomain_btest.cpp2e1717f417d92bb47d7afa0462cde99e2b56ea011538333667000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduunit test fixes for avro changes 2018-09-30 14:54:27 -04002e1717f417d92bb47d7afa0462cde99e2b56ea01unit test fixes for avro changesedittest/unit/Meshing/avro/MesherInterface_avro_btest.cppedittest/unit/Meshing/EGTess/XFieldDomain_btest.cppsrc/Adaptation/MOESS/NodalMetrics.cppsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.cpptest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppsrc/BasisFunction/BasisFunctionSpacetime.htest/unit/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange_btest.cppsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.h37243e20de99d4d2064101ecfcc89622b82983491538402339000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edusome unit testing on polytopes 2018-10-01 09:58:59 -040037243e20de99d4d2064101ecfcc89622b8298349some unit testing on polytopesedittest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppeditsrc/Adaptation/MOESS/NodalMetrics.cppeditsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.heditsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.cppeditsrc/BasisFunction/BasisFunctionSpacetime.hedittest/unit/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange_btest.cppsrc/Adaptation/MOESS/NodalMetrics.cpptest/sandbox/Adapt3D_Mesh_Optimizer_toy.cpp5541bb02ec175864f9ba542ae77424b45acba2301538412427000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edupush to mac for IMR 2018-10-01 12:47:07 -04005541bb02ec175864f9ba542ae77424b45acba230push to mac for IMReditsrc/Adaptation/MOESS/NodalMetrics.cppedittest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppsrc/Adaptation/MOESS/NodalMetrics.cpptest/unit/Adaptation/MOESS/NodalMetrics_btest.cpptest/unit/Adaptation/MOESS/ErrorModel_btest.cpptest/unit/Adaptation/MOESS/MOESS_PX_Optimizer_NLOPT_btest.cpptest/unit/Adaptation/MOESS/ImpliedMetric_Optimizer_NLOPT_btest.cpptest/unit/Adaptation/MOESS/MOESS_Gradation_Optimizer_NLOPT_btest_OFF.cpptest/unit/Adaptation/MOESS/MOESS_btest.cppc4f6d889c6f4c425ec5218d218b79ee2d4f0c95c1538413155000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed bug when parallelizing nodal metrics 2018-10-01 12:59:15 -0400c4f6d889c6f4c425ec5218d218b79ee2d4f0c95cFixed bug when parallelizing nodal metricsedittest/unit/Adaptation/MOESS/ErrorModel_btest.cppedittest/unit/Adaptation/MOESS/MOESS_PX_Optimizer_NLOPT_btest.cppedittest/unit/Adaptation/MOESS/NodalMetrics_btest.cppedittest/unit/Adaptation/MOESS/ImpliedMetric_Optimizer_NLOPT_btest.cppedittest/unit/Adaptation/MOESS/MOESS_Gradation_Optimizer_NLOPT_btest_OFF.cppeditsrc/Adaptation/MOESS/NodalMetrics.cppedittest/unit/Adaptation/MOESS/MOESS_btest.cppsrc/Field/Field_NodalView_Volume.cppsrc/Field/Field_NodalView_Area.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppc22f3d0c27e5f6ab9384a45215cb9d6b09423ba01538509086000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix for MultiScale metric 2018-10-02 15:38:06 -0400c22f3d0c27e5f6ab9384a45215cb9d6b09423ba0Fix for MultiScale metriceditsrc/Field/Field_NodalView_Area.cppeditsrc/Field/Field_NodalView_Volume.cppedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppsrc/ErrorEstimate/DG/ErrorEstimateCell_DGBR2.he60b0cbec13f2e2d6f444cecdad8a5d54cb9efb91538510561000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumoved integrand construction outside of loops for speed 2018-10-02 16:02:41 -0400e60b0cbec13f2e2d6f444cecdad8a5d54cb9efb9moved integrand construction outside of loops for speededitsrc/ErrorEstimate/DG/ErrorEstimateCell_DGBR2.hsrc/ErrorEstimate/ErrorEstimate_Common.hsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.hsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.cppdb48365abf6d660dfffa4527fd513199316e37621538516532000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educaught bug with assignment rather than accumulation 2018-10-02 17:42:12 -0400db48365abf6d660dfffa4527fd513199316e3762caught bug with assignment rather than accumulationeditsrc/ErrorEstimate/ErrorEstimate_Common.heditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.heditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.cppsrc/ErrorEstimate/DG/ErrorEstimateInteriorTrace_DGBR2.h0bf31abaef380b3b673fb4445ee17cac5f110c131538516550000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduthat speed up didn't work.... 2018-10-02 17:42:30 -04000bf31abaef380b3b673fb4445ee17cac5f110c13that speed up didn't work....editsrc/ErrorEstimate/DG/ErrorEstimateInteriorTrace_DGBR2.hsrc/Field/XField_Local_Common_Instantiate_3D.cpptest/unit/Field/XField3D_ElementLocal_Dual_WholeGrids_btest.cppsrc/Field/Element/ElementAssociativityVolumeConstructor.cppsrc/Field/Element/ElementAssociativityVolumeConstructor.h2bc51df4494dc20c2afc081566789a35249609421538516611000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduadded get options for orientation, and caught bug with invalid split group 1 2018-10-02 17:43:31 -04002bc51df4494dc20c2afc081566789a3524960942added get options for orientation, and caught bug with invalid split group 1editsrc/Field/Element/ElementAssociativityVolumeConstructor.cppeditsrc/Field/XField_Local_Common_Instantiate_3D.cppeditsrc/Field/Element/ElementAssociativityVolumeConstructor.hedittest/unit/Field/XField3D_ElementLocal_Dual_WholeGrids_btest.cpptest/unit/Field/XField3D_ElementLocal_Dual_WholeGrids_btest.cpp5c994711150b21fdbba107e86466addab77069011538571814000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduadded a check to see if element is owned by local processor 2018-10-03 09:03:34 -04005c994711150b21fdbba107e86466addab7706901added a check to see if element is owned by local processoredittest/unit/Field/XField3D_ElementLocal_Dual_WholeGrids_btest.cpptest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppa3dc3f7f123f2e2e4be0dd64d8816657f26ce9d21538571883000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduunused variable 2018-10-03 09:04:43 -0400a3dc3f7f123f2e2e4be0dd64d8816657f26ce9d2unused variableedittest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppscripts/jenkins/jenkins_env.shsrc/Field/Element/UniqueElem.hfc8c40083183fd4a9304a75765b3700098ec233c1538576377000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduSuppress cppcheck 2018-10-03 10:19:37 -0400fc8c40083183fd4a9304a75765b3700098ec233cSuppress cppcheckeditsrc/Field/Element/UniqueElem.heditscripts/jenkins/jenkins_env.shtest/unit/Field/XField3D_ElementLocal_Dual_btest.cpp766874660542e020e3f2d905e3e65dd8bea11ad71538580031000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduanother unit test 2018-10-03 11:20:31 -0400766874660542e020e3f2d905e3e65dd8bea11ad7another unit testedittest/unit/Field/XField3D_ElementLocal_Dual_btest.cppsrc/Adaptation/MOESS/NodalMetrics.cppsrc/Adaptation/MOESS/NodalMetrics.hsrc/Adaptation/MOESS/ProblemStatement_HDG_ErrorEstimate.hsrc/Adaptation/MOESS/MOESS.hsrc/Adaptation/MOESS/MOESS.cppsrc/Adaptation/MOESS/SolverInterface_DGBR2_Block2x2.hsrc/Adaptation/MOESS/CostModel_LogEuclidean.hd0485b55863ccbebcc1ea2a28f7141ed4b247d401538604375000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded requested element print out. Fixed int for computing cost. 2018-10-03 18:06:15 -0400d0485b55863ccbebcc1ea2a28f7141ed4b247d40Added requested element print out. Fixed int for computing cost.editsrc/Adaptation/MOESS/NodalMetrics.heditsrc/Adaptation/MOESS/CostModel_LogEuclidean.heditsrc/Adaptation/MOESS/ProblemStatement_HDG_ErrorEstimate.heditsrc/Adaptation/MOESS/SolverInterface_DGBR2_Block2x2.heditsrc/Adaptation/MOESS/NodalMetrics.cppeditsrc/Adaptation/MOESS/MOESS.cppeditsrc/Adaptation/MOESS/MOESS.htest/unit/Field/XField3D_ElementLocal_Dual_Split_btest.cppsrc/Field/XField_ElementLocal_impl.hsrc/Field/XFieldArea_ElementLocal.cppsrc/Field/XFieldVolume_ElementLocal.cppe66da382cb1518e8c4523bd3775b7468d08f2fea1538606056000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edusome more unit tests and caught a bug 2018-10-03 18:34:16 -0400e66da382cb1518e8c4523bd3775b7468d08f2feasome more unit tests and caught a bugeditsrc/Field/XField_ElementLocal_impl.hedittest/unit/Field/XField3D_ElementLocal_Dual_Split_btest.cppeditsrc/Field/XFieldArea_ElementLocal.cppeditsrc/Field/XFieldVolume_ElementLocal.cppsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixS_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_impl.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_CRS_double.cppsrc/Adaptation/MOESS/NLOPT/MOESS_PX_Optimizer_NLOPT.cppCMakeInclude/Builds/BuildPETSC.cmakesrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver.hsrc/Field/Field_CG_Topology.hsrc/Field/Field_CG_Topology.cpp25f0ce0ccdf451696dc05d684f5417bfde2ba5171538617575000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduBetter CG load balancing. PETSc BAIJ works for processors with no DOF possessions 2018-10-03 21:46:15 -040025f0ce0ccdf451696dc05d684f5417bfde2ba517Better CG load balancing. PETSc BAIJ works for processors with no DOF possessionseditsrc/Field/Field_CG_Topology.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver.heditsrc/Field/Field_CG_Topology.cppeditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_CRS_double.cppeditsrc/Adaptation/MOESS/NLOPT/MOESS_PX_Optimizer_NLOPT.cppeditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixS_Instantiate.cppeditCMakeInclude/Builds/BuildPETSC.cmakeeditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_impl.hsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.cpp91cad1216dc78cec6c33e8793ef05134761bf0341538618893000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix for error estimate nodal outputField 2018-10-03 22:08:13 -040091cad1216dc78cec6c33e8793ef05134761bf034Fix for error estimate nodal outputFieldeditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.cpptest/unit/IO/pde/ScalarFunction2D_pattern.txtsrc/pde/AnalyticFunction/ScalarFunction3D.cppsrc/pde/AnalyticFunction/ScalarFunction2D.hsrc/pde/AnalyticFunction/ScalarFunction2D.cppsrc/pde/AnalyticFunction/ScalarFunction3D.htest/unit/pde/AnalyticFunction/ScalarFunction2D_btest.cpp45d43f7d30cc759ca9fc832d15d3a6d56fab84e61538662527000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduadded dictionary options for SineSineSine 2018-10-04 10:15:27 -040045d43f7d30cc759ca9fc832d15d3a6d56fab84e6added dictionary options for SineSineSineeditsrc/pde/AnalyticFunction/ScalarFunction3D.heditsrc/pde/AnalyticFunction/ScalarFunction2D.heditsrc/pde/AnalyticFunction/ScalarFunction3D.cppedittest/unit/IO/pde/ScalarFunction2D_pattern.txtedittest/unit/pde/AnalyticFunction/ScalarFunction2D_btest.cppeditsrc/pde/AnalyticFunction/ScalarFunction2D.cppsrc/Adaptation/MOESS/NodalMetrics.cppsrc/Adaptation/MOESS/SolverInterface_DGBR2_Block2x2.hsrc/Adaptation/MOESS/SolverInterface.hsrc/Adaptation/MOESS/CostModel_LogEuclidean.hsrc/Adaptation/MOESS/ProblemStatement_HDG_ErrorEstimate.h921738274601546f0ecc9991d4d06bbda0e431921538662543000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduhunting some int casts 2018-10-04 10:15:43 -0400921738274601546f0ecc9991d4d06bbda0e43192hunting some int castseditsrc/Adaptation/MOESS/CostModel_LogEuclidean.heditsrc/Adaptation/MOESS/NodalMetrics.cppeditsrc/Adaptation/MOESS/SolverInterface.heditsrc/Adaptation/MOESS/ProblemStatement_HDG_ErrorEstimate.heditsrc/Adaptation/MOESS/SolverInterface_DGBR2_Block2x2.htest/unit/pde/AnalyticFunction/ScalarFunction3D_btest.cppe54cb8bd7b32acd6c7804977eb54f4b79d7c4d091538662869000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edubumping that coverage up 2018-10-04 10:21:09 -0400e54cb8bd7b32acd6c7804977eb54f4b79d7c4d09bumping that coverage upedittest/unit/pde/AnalyticFunction/ScalarFunction3D_btest.cpptest/system/LocalSolve/ElementDualLocalSolve3D_Galerkin_Stabilized_Triangle_AD_btest.cppd440f7effb9b1e053e34822e83805636f73e50c21538663432000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edu3D Element Dual test 2018-10-04 10:30:32 -0400d440f7effb9b1e053e34822e83805636f73e50c23D Element Dual testaddtest/system/LocalSolve/ElementDualLocalSolve3D_Galerkin_Stabilized_Triangle_AD_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_iter_TurbWake_btest.cppsrc/pde/IBL/SetTransitionFrontIBL2D_InteriorTraceGroup.hsrc/pde/IBL/SetIBLtransitionFrontCellGroup.h07cf961e6278f16da24e1dce1b404648250d8a371538665938000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduUpdated printout format 2018-10-04 11:12:18 -040007cf961e6278f16da24e1dce1b404648250d8a37Updated printout formateditsrc/pde/IBL/SetTransitionFrontIBL2D_InteriorTraceGroup.heditsrc/pde/IBL/SetIBLtransitionFrontCellGroup.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_iter_TurbWake_btest.cpptest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cppc84ee1610d78a95e6a07ff0b2be209c45daebe3e1538668119000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edutweak 2018-10-04 11:48:39 -0400c84ee1610d78a95e6a07ff0b2be209c45daebe3etweakedittest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppsrc/pde/NS/OutputEuler3D.h9283b5f8843f4a2a324b61ee7bf3f7d5dff115c81538676140000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded mach output functional for DeltaWing 2018-10-04 14:02:20 -04009283b5f8843f4a2a324b61ee7bf3f7d5dff115c8Added mach output functional for DeltaWingeditsrc/pde/NS/OutputEuler3D.hedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cpptest/unit/pde/AnalyticFunction/CMakeLists.txttest/unit/pde/ArtificialViscosity/CMakeLists.txttest/unit/pde/AdvectionDiffusion/CMakeLists.txttest/unit/pde/FullPotential/CMakeLists.txttest/unit/pde/HSM/CMakeLists.txttest/unit/pde/ShallowWater/CMakeLists.txttest/unit/Discretization/FV_TPFA/CMakeLists.txtCMakeLists.txttest/unit/pde/CauchyRiemann/CMakeLists.txttest/unit/CMakeLists.txttest/unit/Meshing/Metric/CMakeLists.txttest/unit/pde/PorousMedia/CMakeLists.txttest/unit/pde/Sensor/CMakeLists.txttest/unit/Quaternion/CMakeLists.txttest/unit/pde/NDConvert/CMakeLists.txttest/unit/pde/Burgers/CMakeLists.txttest/unit/pde/Distance/CMakeLists.txttest/unit/pde/IBL/CMakeLists.txttest/unit/pde/NS/CMakeLists.txttest/unit/Discretization/Galerkin/CMakeLists.txteb5f2f8b9bc077b66044767fbf8925f23336662e1538742229000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduStarted to rework cmake folder test names 2018-10-05 08:23:49 -0400eb5f2f8b9bc077b66044767fbf8925f23336662eStarted to rework cmake folder test namesedittest/unit/pde/ArtificialViscosity/CMakeLists.txtedittest/unit/CMakeLists.txtedittest/unit/Discretization/Galerkin/CMakeLists.txtedittest/unit/pde/IBL/CMakeLists.txteditCMakeLists.txtedittest/unit/Discretization/FV_TPFA/CMakeLists.txtedittest/unit/pde/CauchyRiemann/CMakeLists.txtedittest/unit/pde/NDConvert/CMakeLists.txtedittest/unit/pde/FullPotential/CMakeLists.txtedittest/unit/pde/HSM/CMakeLists.txtedittest/unit/pde/Distance/CMakeLists.txtedittest/unit/pde/AdvectionDiffusion/CMakeLists.txtedittest/unit/Quaternion/CMakeLists.txtedittest/unit/Meshing/Metric/CMakeLists.txtedittest/unit/pde/Sensor/CMakeLists.txtedittest/unit/pde/ShallowWater/CMakeLists.txtedittest/unit/pde/NS/CMakeLists.txtedittest/unit/pde/PorousMedia/CMakeLists.txtedittest/unit/pde/AnalyticFunction/CMakeLists.txtedittest/unit/pde/Burgers/CMakeLists.txttest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cppf4b35298a40aab7d9d74c7be9dfbcf7375c954b51538755815000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduforgot a dictionary 2018-10-05 12:10:15 -0400f4b35298a40aab7d9d74c7be9dfbcf7375c954b5forgot a dictionaryedittest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cppf5f05808dc4f8f2364c63751816886f3e3f8c5eb1538795827000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded mach field dump for MOESS delta wing 2018-10-05 23:17:07 -0400f5f05808dc4f8f2364c63751816886f3e3f8c5ebAdded mach field dump for MOESS delta wingedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_MultiScaleMetric_toy.cpptest/unit/CMakeLists.txttest/system/CMakeLists.txt7ae01df43f4f8ba1c017ed83ed33172de6ea14df1538870930000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduNew folder test names. We can revert/modify if they are awkward 2018-10-06 20:08:50 -04007ae01df43f4f8ba1c017ed83ed33172de6ea14dfNew folder test names. We can revert/modify if they are awkwardedittest/system/CMakeLists.txtedittest/unit/CMakeLists.txttest/unit/CMakeLists.txttest/unit/Discretization/Block/CMakeLists.txttest/unit/Field/Element/CMakeLists.txttest/system/CMakeLists.txt2faebb8c2f9535e79eef652f4fc87e00984600bb1538882579000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMissed XDIR related things 2018-10-06 23:22:59 -04002faebb8c2f9535e79eef652f4fc87e00984600bbMissed XDIR related thingsedittest/unit/Discretization/Block/CMakeLists.txtedittest/unit/CMakeLists.txtedittest/unit/Field/Element/CMakeLists.txtedittest/system/CMakeLists.txttest/sandbox/deformationTime.dattest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_Poisson_toy.cpptest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cpp424d79fa7c17906aea4b133224d1df72cd60d9b31538956704000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edudictionary fixes and parameter tweaks 2018-10-07 19:58:24 -0400424d79fa7c17906aea4b133224d1df72cd60d9b3dictionary fixes and parameter tweaksedittest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cppedittest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppedittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_Poisson_toy.cppaddtest/sandbox/deformationTime.dattest/sandbox/Adapt2D_Galerkin_Stabilized_Poisson_toy.cpptest/sandbox/Adapt2D_DGBR2_Poisson_toy.cppcf4dab592b7084bd48a606be75db8b8ef01175141538959424000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumore dictionary fixes 2018-10-07 20:43:44 -0400cf4dab592b7084bd48a606be75db8b8ef0117514more dictionary fixesedittest/sandbox/Adapt2D_DGBR2_Poisson_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_Poisson_toy.cppsrc/Meshing/gmsh/XField_gmsh.hsrc/Meshing/gmsh/XField_gmsh.cpptest/unit/Meshing/gmsh/XField_gmsh_btest.cpptest/unit/IO/Meshes/periodicBox_gmsh.msh10c62f89ce7dffb79af1cd4bfe3d2b305125e5a81538967167000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduPeriodic boundary support for gmsh reader 2018-10-07 22:52:47 -040010c62f89ce7dffb79af1cd4bfe3d2b305125e5a8Periodic boundary support for gmsh readereditsrc/Meshing/gmsh/XField_gmsh.cppaddtest/unit/IO/Meshes/periodicBox_gmsh.msheditsrc/Meshing/gmsh/XField_gmsh.hedittest/unit/Meshing/gmsh/XField_gmsh_btest.cpptest/system/LocalSolve/ElementDualLocalSolve3D_Galerkin_Stabilized_Triangle_AD_btest.cppfe74e54adcc91b1b80aa264d0fa9362821ad71a21539006457000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edureduced test size 2018-10-08 09:47:37 -0400fe74e54adcc91b1b80aa264d0fa9362821ad71a2reduced test sizeedittest/system/LocalSolve/ElementDualLocalSolve3D_Galerkin_Stabilized_Triangle_AD_btest.cppsrc/Meshing/refine/MesherInterface_refine.cppsrc/Meshing/refine/XField3D_refine.cpptest/unit/Meshing/refine/refine3D_btest.cpp1f01a24f1ac6be63e929a26c91b1640207773df21539039525000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdates so refine might work in parallel 2018-10-08 18:58:45 -04001f01a24f1ac6be63e929a26c91b1640207773df2Updates so refine might work in paralleleditsrc/Meshing/refine/XField3D_refine.cppedittest/unit/Meshing/refine/refine3D_btest.cppeditsrc/Meshing/refine/MesherInterface_refine.cppCMakeInclude/Checks/ref_fortran.cCMakeInclude/Checks/CheckREFINE.cmakeCMakeInclude/Checks/ref_check.c603c84f1c6494cef0536d15e41d6bc87472750581539042348000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdated refine check with cmake 2018-10-08 19:45:48 -0400603c84f1c6494cef0536d15e41d6bc8747275058Updated refine check with cmakeeditCMakeInclude/Checks/CheckREFINE.cmakedeleteCMakeInclude/Checks/ref_fortran.caddCMakeInclude/Checks/ref_check.ctest/system/LocalSolve/ElementDualLocalSolve3D_Galerkin_Stabilized_Triangle_AD_btest.cpp075fb805e54fb5b1113f077644afc6375250077d1539092820000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edushortened test again... 2018-10-09 09:47:00 -0400075fb805e54fb5b1113f077644afc6375250077dshortened test again...edittest/system/LocalSolve/ElementDualLocalSolve3D_Galerkin_Stabilized_Triangle_AD_btest.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cpp0f3a336c51f651e6947a1af89fab62161e84894f1539112630000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixes for DeltaWing to dump mach field 2018-10-09 15:17:10 -04000f3a336c51f651e6947a1af89fab62161e84894fFixes for DeltaWing to dump mach fieldedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cpptest/sandbox/deformationTime.dat.gitignore23e21875de9ddf4e8647345957a24d875f2ad31c1539112774000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduRemoved deformationTime.dat 2018-10-09 15:19:34 -040023e21875de9ddf4e8647345957a24d875f2ad31cRemoved deformationTime.datedit.gitignoredeletetest/sandbox/deformationTime.dattest/unit/LinearAlgebra/TriDiagPattern_btest.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_CRS_double.cppCMakeInclude/Checks/ref_check.csrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized.hsrc/NonLinearSolver/NewtonSolver_impl.hsrc/Meshing/gmsh/XField_gmsh.cppsrc/pde/AnalyticFunction/ScalarFunction3D.cpptest/unit/Meshing/refine/CMakeLists.txtsrc/pde/AnalyticFunction/ScalarFunction3D.hsrc/Adaptation/MOESS/SolverInterface_DGBR2.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixS_Instantiate.cpptest/unit/LinearAlgebra/SparseLinAlg/PETSc/PETSc_btest.cppsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_impl.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_backsolve.hsrc/Adaptation/MOESS/SolverInterface_DGAdvective.htest/unit/LinearAlgebra/Heat1D_btest.hsrc/Adaptation/MOESS/SolverInterface_Galerkin.htest/unit/LinearAlgebra/Advection1D_btest.htest/unit/Meshing/refine/refine3D_btest.cppsrc/Adaptation/MOESS/SolverInterface_DGBR2_Block2x2.hsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective.hsrc/Meshing/refine/MesherInterface_refine.cppsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective_impl.hc1c069af8b905b13b2845d1f59c1cdb4798549741539113036000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduPETSc uses x as initial guess. Use P-Adjoint as initial P+1-Adjoing with Galerkin. Other cleanups. 2018-10-09 15:23:56 -0400c1c069af8b905b13b2845d1f59c1cdb479854974PETSc uses x as initial guess. Use P-Adjoint as initial P+1-Adjoing with Galerkin. Other cleanups.editsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixS_Instantiate.cppeditsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective.heditsrc/Adaptation/MOESS/SolverInterface_Galerkin.hedittest/unit/LinearAlgebra/SparseLinAlg/PETSc/PETSc_btest.cppeditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_backsolve.heditsrc/Meshing/refine/MesherInterface_refine.cppeditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_impl.hedittest/unit/LinearAlgebra/Advection1D_btest.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Galerkin_Stabilized.hedittest/unit/LinearAlgebra/TriDiagPattern_btest.hedittest/unit/Meshing/refine/refine3D_btest.cppedittest/unit/Meshing/refine/CMakeLists.txteditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_CRS_double.cppeditsrc/Adaptation/MOESS/SolverInterface_DGBR2.hedittest/unit/LinearAlgebra/Heat1D_btest.heditsrc/NonLinearSolver/NewtonSolver_impl.heditsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective_impl.heditsrc/Adaptation/MOESS/SolverInterface_DGAdvective.heditsrc/Meshing/gmsh/XField_gmsh.cppeditsrc/Adaptation/MOESS/SolverInterface_DGBR2_Block2x2.heditCMakeInclude/Checks/ref_check.ceditsrc/pde/AnalyticFunction/ScalarFunction3D.heditsrc/pde/AnalyticFunction/ScalarFunction3D.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cpp969d468ec21a9897332c2d55dcbd6b10f2a2c2cf1539114355000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduClean up adjoint solve for DeltaWing 2018-10-09 12:45:55 -0700969d468ec21a9897332c2d55dcbd6b10f2a2c2cfClean up adjoint solve for DeltaWingedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppsrc/Meshing/EPIC/MesherInterface_Epic.cpptest/unit/Meshing/refine/CMakeLists.txt3c945720acf7ba9aea2381d2755b1fb9f6b5e4851539114435000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduDon't run refine in parallel yet 2018-10-09 15:47:15 -04003c945720acf7ba9aea2381d2755b1fb9f6b5e485Don't run refine in parallel yetedittest/unit/Meshing/refine/CMakeLists.txteditsrc/Meshing/EPIC/MesherInterface_Epic.cpptest/system/LocalSolve/ElementDualLocalSolve3D_Galerkin_Stabilized_Triangle_AD_btest.cpp3ded3e0d7f8bebf14f61da80b4a35d50cf6cba7f1539119640000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educhanging to unstabilized for testing 2018-10-09 17:14:00 -04003ded3e0d7f8bebf14f61da80b4a35d50cf6cba7fchanging to unstabilized for testingedittest/system/LocalSolve/ElementDualLocalSolve3D_Galerkin_Stabilized_Triangle_AD_btest.cpptest/sandbox/deformationTime.dattest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpp1882b9f1387e81d9ccbacba5675c2dd987910a541539119731000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edutweaks and removing an unintended file 2018-10-09 17:15:31 -04001882b9f1387e81d9ccbacba5675c2dd987910a54tweaks and removing an unintended filedeletetest/sandbox/deformationTime.datedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppsrc/Adaptation/MeshAdapter.htest/sandbox/Adapt2D_DGBR2_RANSSA_FlatPlate_toy.cppc2ada69e05b0d5cd3e7c777cc3db159ed13be2f61539119769000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edubasic scheduler and timing dumps at the end of test adapthist 2018-10-09 17:16:09 -0400c2ada69e05b0d5cd3e7c777cc3db159ed13be2f6basic scheduler and timing dumps at the end of test adapthisteditsrc/Adaptation/MeshAdapter.hedittest/sandbox/Adapt2D_DGBR2_RANSSA_FlatPlate_toy.cppsrc/Meshing/gmsh/XField_gmsh.hsrc/Meshing/gmsh/XField_gmsh.cpptest/unit/Meshing/gmsh/XField_gmsh_btest.cpp201bd99aaa65f439848c954df38e1280047d93f51539135292000https://acdl.mit.edu/csi/user/blscblscblsc@mit.eduPeriodic gmsh fix for parallel 2018-10-09 21:34:52 -0400201bd99aaa65f439848c954df38e1280047d93f5Periodic gmsh fix for paralleleditsrc/Meshing/gmsh/XField_gmsh.cppedittest/unit/Meshing/gmsh/XField_gmsh_btest.cppeditsrc/Meshing/gmsh/XField_gmsh.htest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppbffc4e3da13d23974daa87b874ab90b127e2f2281539178297000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumoving box 2018-10-10 09:31:37 -0400bffc4e3da13d23974daa87b874ab90b127e2f228moving boxedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppsrc/Discretization/Galerkin/Stabilization_Galerkin.htest/unit/Field/Element/ElementProjection_L2_Triangle_btest.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cpptest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cpptest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppd7a24bad30fd3eee396b51d1b2f5a4410d1a2bae1539179031000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumend 2018-10-10 09:43:51 -0400d7a24bad30fd3eee396b51d1b2f5a4410d1a2baemendedittest/unit/Field/Element/ElementProjection_L2_Triangle_btest.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppeditsrc/Discretization/Galerkin/Stabilization_Galerkin.hedittest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppedittest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cppedittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppsrc/Adaptation/MOESS/ErrorModel.cpptest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cpptest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cpptest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppe77d261ca0a6fe10fa510896c8fa1f9f0bac1c041539186909000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumoving box 2018-10-10 11:55:09 -0400e77d261ca0a6fe10fa510896c8fa1f9f0bac1c04moving boxeditsrc/Adaptation/MOESS/ErrorModel.cppedittest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cppedittest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppedittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cpptest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppf583c9d72bd1550feeb14fd1d7aea7c74bc2c7b11539187506000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduforgot to allow PETSC 2018-10-10 12:05:06 -0400f583c9d72bd1550feeb14fd1d7aea7c74bc2c7b1forgot to allow PETSCedittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cpptest/unit/LinearAlgebra/SparseLinAlg/PETSc/PETSc_btest.cppsrc/Field/XField_checkTraceNormal_impl.htest/unit/Discretization/Galerkin/JacobianFunctionalCell_Galerkin_btest.cppsrc/Discretization/Galerkin/JacobianFunctionalCell_Galerkin.htest/unit/Discretization/Galerkin/JacobianCell_Galerkin_Stabilized_NS_btest.cppsrc/Discretization/Galerkin/JacobianFunctionalBoundaryTrace_Galerkin.hsrc/pde/NS/PDEEuler3D.h9bf65435a1509ce85229bfea0f191dbeb413acfb1539190685000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduJacobianFunctionalCell_Galerkin now works in parallel. Other small fixes. 2018-10-10 12:58:05 -04009bf65435a1509ce85229bfea0f191dbeb413acfbJacobianFunctionalCell_Galerkin now works in parallel. Other small fixes.edittest/unit/Discretization/Galerkin/JacobianCell_Galerkin_Stabilized_NS_btest.cppedittest/unit/LinearAlgebra/SparseLinAlg/PETSc/PETSc_btest.cppeditsrc/Field/XField_checkTraceNormal_impl.heditsrc/Discretization/Galerkin/JacobianFunctionalCell_Galerkin.hedittest/unit/Discretization/Galerkin/JacobianFunctionalCell_Galerkin_btest.cppeditsrc/Discretization/Galerkin/JacobianFunctionalBoundaryTrace_Galerkin.heditsrc/pde/NS/PDEEuler3D.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_NewtonUR_TurbWake_btest.cpp29f39292718a17e9b24ad914eb465f85663d5a4d1539202532000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduStarted a new test case 2018-10-10 16:15:32 -040029f39292718a17e9b24ad914eb465f85663d5a4dStarted a new test caseaddtest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_NewtonUR_TurbWake_btest.cppsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.h27875b1ffabbc94b546491638c060f35d7fdcbcb1539203054000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educhanged to copy construction 2018-10-10 16:24:14 -040027875b1ffabbc94b546491638c060f35d7fdcbcbchanged to copy constructioneditsrc/ErrorEstimate/Galerkin/ErrorEstimateNodalBase_Galerkin.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_NewtonUR_TurbWake_btest.cppa731ce2dc0de49648c5e57d8e187ac962bb35ce31539204613000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduExposed Netwon iterations of free-transition solve 2018-10-10 16:50:13 -0400a731ce2dc0de49648c5e57d8e187ac962bb35ce3Exposed Netwon iterations of free-transition solveedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_NewtonUR_TurbWake_btest.cpptest/system/Asymptotic/ErrorOrder_3D_DGBR2_Periodic_Hex_AD_btest.cpp12062bcb1a5d6de86633cefb37f6531073b9837d1539206399000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMissed a solution initialization for PETSc 2018-10-10 17:19:59 -040012062bcb1a5d6de86633cefb37f6531073b9837dMissed a solution initialization for PETScedittest/system/Asymptotic/ErrorOrder_3D_DGBR2_Periodic_Hex_AD_btest.cppsrc/Field/Partition/XField_Lagrange.hsrc/Field/Partition/XField_Lagrange_Distribute_impl.h4eb38e3cf1e5e95be4c0c0e2394f9f8c745dd3c61539222965000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded parallel interfac to XField_Lagrange. 2018-10-10 21:56:05 -04004eb38e3cf1e5e95be4c0c0e2394f9f8c745dd3c6Added parallel interfac to XField_Lagrange.editsrc/Field/Partition/XField_Lagrange.heditsrc/Field/Partition/XField_Lagrange_Distribute_impl.hsrc/Meshing/refine/XField3D_refine.cppd264755d5502ade780c0b1ca2aab92935b0692631539227680000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdated XField3D_refine so it hopefully works in parallel 2018-10-10 23:14:40 -0400d264755d5502ade780c0b1ca2aab92935b069263Updated XField3D_refine so it hopefully works in paralleleditsrc/Meshing/refine/XField3D_refine.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_NewtonUR_TurbWake_btest.cpp8e1b1f3bc1f9c58f6b331a230a244dca3734b2411539267537000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduNested forced-transition solve within nonlinear solution of free-transition problem 2018-10-11 10:18:57 -04008e1b1f3bc1f9c58f6b331a230a244dca3734b241Nested forced-transition solve within nonlinear solution of free-transition problemedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_NewtonUR_TurbWake_btest.cppsrc/Meshing/EGTess/XFieldDomain_impl.htest/unit/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange_btest.cppsrc/Meshing/avro/MesherInterface_avro.cppsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.cppsrc/Adaptation/MOESS/CostModel_LogEuclidean.cppsrc/Meshing/avro/CMakeLists.txttest/sandbox/Adapt3D_Mesh_Optimizer_toy.cpptest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_avro_toy.cppsrc/Meshing/EGTess/XFieldDomain.htest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cpp494814f9103634ad6bb55321c3b4a2678acbdb241539270668000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduwork towards calling avro from parallel SANS 2018-10-11 11:11:08 -0400494814f9103634ad6bb55321c3b4a2678acbdb24work towards calling avro from parallel SANSedittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppeditsrc/Meshing/avro/CMakeLists.txtedittest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppedittest/unit/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange_btest.cppeditsrc/Adaptation/MOESS/CostModel_LogEuclidean.cppeditsrc/Meshing/avro/MesherInterface_avro.cppeditsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.cppeditsrc/Meshing/EGTess/XFieldDomain_impl.hedittest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_avro_toy.cppeditsrc/Meshing/EGTess/XFieldDomain.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_NewtonUR_TurbWake_btest.cppf449055644f1a886dfbfc051e7d28c4b3f3d03671539270796000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded a patch to the corner case where transition happens at an element interface 2018-10-11 11:13:16 -0400f449055644f1a886dfbfc051e7d28c4b3f3d0367Added a patch to the corner case where transition happens at an element interfaceedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_NewtonUR_TurbWake_btest.cppsrc/Meshing/refine/XField3D_refine.cppCMakeInclude/Checks/ref_check.cCMakeInclude/Builds/BuildREFINE.cmakesrc/Meshing/refine/MultiScale_metric.hsrc/Meshing/refine/XField_refine.hsrc/Field/Partition/XField_Lagrange_Distribute_impl.hsrc/Meshing/refine/MultiScale_metric.cpptest/unit/Meshing/refine/CMakeLists.txtsrc/pde/AnalyticFunction/ScalarFunction3D.hCMakeInclude/Finds/FindREFINE.cmakeCMakeInclude/Checks/CheckREFINE.cmakesrc/Field/Partition/XField_Lagrange.htest/unit/Meshing/refine/refine3D_btest.cppsrc/Meshing/refine/MesherInterface_refine.cppsrc/Meshing/refine/CMakeLists.txt3ac0d46b5caf23cbf2b4fa70c4804f109c477be11539304132000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.edurefine API now works in parallel 2018-10-11 20:28:52 -04003ac0d46b5caf23cbf2b4fa70c4804f109c477be1refine API now works in paralleledittest/unit/Meshing/refine/CMakeLists.txteditCMakeInclude/Checks/ref_check.ceditCMakeInclude/Builds/BuildREFINE.cmakeeditCMakeInclude/Finds/FindREFINE.cmakeeditsrc/Field/Partition/XField_Lagrange.heditsrc/Meshing/refine/XField3D_refine.cppedittest/unit/Meshing/refine/refine3D_btest.cppeditsrc/Meshing/refine/CMakeLists.txteditsrc/pde/AnalyticFunction/ScalarFunction3D.heditCMakeInclude/Checks/CheckREFINE.cmakeaddsrc/Meshing/refine/MultiScale_metric.heditsrc/Meshing/refine/XField_refine.haddsrc/Meshing/refine/MultiScale_metric.cppeditsrc/Field/Partition/XField_Lagrange_Distribute_impl.heditsrc/Meshing/refine/MesherInterface_refine.cppsrc/Meshing/refine/MultiScale_metric.cppsrc/Adaptation/MOESS/SolverInterface_Galerkin.hsrc/pde/AnalyticFunction/ScalarFunction3D.h745ba5ec56113c44bd697581b156e47a9af0191d1539308198000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduDon't allocate P and P+1 jacobian at the same time for Galerkin 2018-10-11 21:36:38 -0400745ba5ec56113c44bd697581b156e47a9af0191dDon't allocate P and P+1 jacobian at the same time for Galerkineditsrc/pde/AnalyticFunction/ScalarFunction3D.heditsrc/Meshing/refine/MultiScale_metric.cppeditsrc/Adaptation/MOESS/SolverInterface_Galerkin.hCMakeInclude/Finds/FindZOLTAN.cmakeCMakeInclude/Builds/BuildZOLTAN.cmakesrc/Field/Partition/XField_Lagrange_Distribute_impl.h0a7d64adb24db3642faa331672c0eb780ff3cb731539308507000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduForgot some files 2018-10-11 21:41:47 -04000a7d64adb24db3642faa331672c0eb780ff3cb73Forgot some filesaddCMakeInclude/Builds/BuildZOLTAN.cmakeeditsrc/Field/Partition/XField_Lagrange_Distribute_impl.haddCMakeInclude/Finds/FindZOLTAN.cmakesrc/Meshing/refine/XField3D_refine.cppsrc/pde/AnalyticFunction/ScalarFunction3D.hsrc/Adaptation/MOESS/ErrorModel.cppsrc/Field/Partition/XField_Lagrange.hsrc/Field/Partition/XField_Lagrange_Distribute_impl.ha3cb6492cbe359a7d0c3702b70874ccc48e491531539346198000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduVarious fixes 2018-10-12 08:09:58 -0400a3cb6492cbe359a7d0c3702b70874ccc48e49153Various fixeseditsrc/Meshing/refine/XField3D_refine.cppeditsrc/Field/Partition/XField_Lagrange.heditsrc/pde/AnalyticFunction/ScalarFunction3D.heditsrc/Field/Partition/XField_Lagrange_Distribute_impl.heditsrc/Adaptation/MOESS/ErrorModel.cppsrc/Field/Partition/XField_Lagrange_Distribute_impl.hbd8b69fe01deaed03dcc213d2c616ac3575dc43b1539348922000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMore informative error messages 2018-10-12 08:55:22 -0400bd8b69fe01deaed03dcc213d2c616ac3575dc43bMore informative error messageseditsrc/Field/Partition/XField_Lagrange_Distribute_impl.hsrc/Field/Partition/XField_Lagrange_Distribute_impl.hbcf178df600c3ddba06712b169e79dec6f5fdee01539355269000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduOne more fix for parallel grid creation 2018-10-12 10:41:09 -0400bcf178df600c3ddba06712b169e79dec6f5fdee0One more fix for parallel grid creationeditsrc/Field/Partition/XField_Lagrange_Distribute_impl.hsrc/Field/Partition/XField_Lagrange_Distribute_impl.h80c989a711915f8eed09acbcd6713eb068f6a5bb1539355332000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduTypo 2018-10-12 10:42:12 -040080c989a711915f8eed09acbcd6713eb068f6a5bbTypoeditsrc/Field/Partition/XField_Lagrange_Distribute_impl.hsrc/Meshing/EPIC/MesherInterface_Epic.h.gitignoresrc/Meshing/refine/MesherInterface_refine.cppsrc/Meshing/EPIC/MesherInterface_Epic.cppCMakeInclude/Builds/BuildREFINE.cmake2b4af19cf38f08d9272c5865cb5614361a3f44811539365902000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMore robust EPIC call interface. Improved refine build. 2018-10-12 10:38:22 -07002b4af19cf38f08d9272c5865cb5614361a3f4481More robust EPIC call interface. Improved refine build.edit.gitignoreeditsrc/Meshing/refine/MesherInterface_refine.cppeditsrc/Meshing/EPIC/MesherInterface_Epic.heditCMakeInclude/Builds/BuildREFINE.cmakeeditsrc/Meshing/EPIC/MesherInterface_Epic.cppsrc/pde/IBL/SetIBLtransitionFrontCellGroup.h04bbe344d68cacd1d575cf0326704d301af7cc6d1539368744000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed a bug in transition location identification within cells 2018-10-12 14:25:44 -040004bbe344d68cacd1d575cf0326704d301af7cc6dFixed a bug in transition location identification within cellseditsrc/pde/IBL/SetIBLtransitionFrontCellGroup.hsrc/Meshing/refine/MultiScale_metric.cppeff7c8ac6e8cf7c79b850b0743284eed1ae5d1941539368833000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed memory leak 2018-10-12 14:27:13 -0400eff7c8ac6e8cf7c79b850b0743284eed1ae5d194Fixed memory leakeditsrc/Meshing/refine/MultiScale_metric.cppsrc/Meshing/refine/MesherInterface_refineParams.cppsrc/Meshing/EPIC/MesherInterface_Epic.cppsrc/Meshing/refine/MesherInterface_refine.cppsrc/Meshing/refine/MesherInterface_refine.hba4a56ac0c594ca88cb8fdeacc76db6676d762b91539374010000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMore robust system call to refine 2018-10-12 15:53:30 -0400ba4a56ac0c594ca88cb8fdeacc76db6676d762b9More robust system call to refineeditsrc/Meshing/refine/MesherInterface_refineParams.cppeditsrc/Meshing/EPIC/MesherInterface_Epic.cppeditsrc/Meshing/refine/MesherInterface_refine.cppeditsrc/Meshing/refine/MesherInterface_refine.hsrc/Adaptation/MOESS/ErrorModel.cpp7a2174a7d78f22a1be50be1e85fd807c151304321539377400000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumight Edge local work? 2018-10-12 16:50:00 -04007a2174a7d78f22a1be50be1e85fd807c15130432might Edge local work?editsrc/Adaptation/MOESS/ErrorModel.cppsrc/Adaptation/MeshAdapter.htest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cpp1dab9f28e962f466cfe87dc9c474875e0c73dd0c1539380966000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edurunning a 3D CG adapt in parallel! 2018-10-12 17:49:26 -04001dab9f28e962f466cfe87dc9c474875e0c73dd0crunning a 3D CG adapt in parallel!edittest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppeditsrc/Adaptation/MeshAdapter.htest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppf500186f472c5d38aadf08aeb8bcd2ece079e78e1539381613000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduforgot to actually use the scheduler 2018-10-12 18:00:13 -0400f500186f472c5d38aadf08aeb8bcd2ece079e78eforgot to actually use the scheduleredittest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppsrc/Adaptation/MOESS/SolverInterface_DGBR2.h6c533ce0dc8d254d32e472b421bb305498c12a9f1539382308000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduPrecondition adjoint P+1 solve with adjoint P solve for DGBR2 2018-10-12 18:11:48 -04006c533ce0dc8d254d32e472b421bb305498c12a9fPrecondition adjoint P+1 solve with adjoint P solve for DGBR2editsrc/Adaptation/MOESS/SolverInterface_DGBR2.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixS_Instantiate.cppsrc/Discretization/DG/AlgebraicEquationSet_DGBR2_impl.hsrc/Discretization/DG/AlgebraicEquationSet_DGBR2.h31253cb773577effd0299f2fd24e5a56130003cf1539382676000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduForgot some files 2018-10-12 18:17:56 -040031253cb773577effd0299f2fd24e5a56130003cfForgot some fileseditsrc/Discretization/DG/AlgebraicEquationSet_DGBR2.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixS_Instantiate.cppeditsrc/Discretization/DG/AlgebraicEquationSet_DGBR2_impl.hCMakeInclude/CompilerFlags.cmaketest/sandbox/Adapt3D_DG_AD_L2_MOESS_toy.cppCMakeInclude/Builds/BuildSUITESPARSE.cmakeCMakeInclude/Builds/BuildREFINE.cmakesrc/Field/Partition/XField_Lagrange_Distribute_impl.hsrc/pde/AnalyticFunction/ScalarFunction3D.cppsrc/pde/AnalyticFunction/ScalarFunction3D.hCMakeInclude/Builds/BuildZOLTAN.cmakesrc/Adaptation/MOESS/ErrorModel_Elemental.cppCMakeInclude/Builds/BuildCBLAS.cmakeCMakeInclude/Builds/BuildPARMETIS.cmakeCMakeInclude/Builds/BuildPETSC.cmaketest/system/LocalSolve/CMakeLists.txtCMakeInclude/Builds/BuildTRIANGLE.cmakeCMakeInclude/Builds/BuildNLOPT.cmaketest/unit/Meshing/refine/refine3D_btest.cppCMakeInclude/Builds/BuildTETGEN.cmake5fd3bfd8b82be5b59b4763a932a7ac197200e43f1539451876000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduWroking on L2 projections. Various fixes 2018-10-13 13:31:16 -04005fd3bfd8b82be5b59b4763a932a7ac197200e43fWroking on L2 projections. Various fixeseditsrc/pde/AnalyticFunction/ScalarFunction3D.cppeditsrc/pde/AnalyticFunction/ScalarFunction3D.heditCMakeInclude/Builds/BuildNLOPT.cmakeeditsrc/Field/Partition/XField_Lagrange_Distribute_impl.heditCMakeInclude/Builds/BuildSUITESPARSE.cmakeaddtest/sandbox/Adapt3D_DG_AD_L2_MOESS_toy.cppeditCMakeInclude/Builds/BuildPARMETIS.cmakeeditsrc/Adaptation/MOESS/ErrorModel_Elemental.cppeditCMakeInclude/Builds/BuildREFINE.cmakeeditCMakeInclude/Builds/BuildZOLTAN.cmakeeditCMakeInclude/Builds/BuildPETSC.cmakeeditCMakeInclude/Builds/BuildCBLAS.cmakeeditCMakeInclude/Builds/BuildTETGEN.cmakeedittest/unit/Meshing/refine/refine3D_btest.cppeditCMakeInclude/CompilerFlags.cmakeedittest/system/LocalSolve/CMakeLists.txteditCMakeInclude/Builds/BuildTRIANGLE.cmaketest/sandbox/Adapt3D_DG_AD_L2_MOESS_toy.cppsrc/pde/AnalyticFunction/ScalarFunction3D.h08ce97817979e4bccfd15d8e63661f6ddd033c881539458746000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixes for L2 projection cases 2018-10-13 15:25:46 -040008ce97817979e4bccfd15d8e63661f6ddd033c88Fixes for L2 projection caseseditsrc/pde/AnalyticFunction/ScalarFunction3D.hedittest/sandbox/Adapt3D_DG_AD_L2_MOESS_toy.cpptest/sandbox/Adapt3D_DG_AD_L2_MOESS_toy.cpp4cfb644753f56345420bc694a1da4f1827fbb02e1539459073000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduTypo 2018-10-13 15:31:13 -04004cfb644753f56345420bc694a1da4f1827fbb02eTypoedittest/sandbox/Adapt3D_DG_AD_L2_MOESS_toy.cpptest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cpptest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cpp33b91df32e1f4f1669d2845356f01f35be3db5fd1539486892000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduadded a targetCost scheduler 2018-10-13 23:14:52 -040033b91df32e1f4f1669d2845356f01f35be3db5fdadded a targetCost scheduleredittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppedittest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppb270a8156269c26f579aa85eca69ea192561be961539539504000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduunused variable and style fixes 2018-10-14 13:51:44 -0400b270a8156269c26f579aa85eca69ea192561be96unused variable and style fixesedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppedittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppsrc/Meshing/EGADS/EGModel.cppCMakeInclude/CompilerFlags.cmakesrc/Meshing/EGTess/XFieldDomain_impl.hsrc/Adaptation/TargetMetric.hsrc/Field/Partition/XField_Lagrange_Distribute_impl.hsrc/Adaptation/MeshAdapter.cppsrc/Adaptation/MeshAdapter.htest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppsrc/Adaptation/CMakeLists.txttest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppsrc/Adaptation/MOESS/NodalMetrics.cppsrc/Adaptation/MOESS/NodalMetrics.hsrc/Field/XField_impl.hsrc/Adaptation/TargetMetric.cppsrc/Meshing/EGADS/EGBody.hsrc/Adaptation/MOESS/MOESS.cppsrc/Meshing/avro/MesherInterface_avro.cpptest/sandbox/Adapt3D_DGBR2_AD_HemisphereCylinder_toy.cppsrc/Meshing/EGTess/XFieldDomain.htest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppa7ec6a5aabc70eeb7b4c88594064191e8c6b0ea91539610636000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edumaintain same list of lower-dim egads entities for parallel 2018-10-15 09:37:16 -0400a7ec6a5aabc70eeb7b4c88594064191e8c6b0ea9maintain same list of lower-dim egads entities for paralleleditsrc/Field/XField_impl.heditsrc/Meshing/EGTess/XFieldDomain.hedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppeditsrc/Adaptation/MOESS/MOESS.cppeditsrc/Field/Partition/XField_Lagrange_Distribute_impl.heditCMakeInclude/CompilerFlags.cmakeeditsrc/Adaptation/MOESS/NodalMetrics.heditsrc/Adaptation/CMakeLists.txtaddsrc/Adaptation/TargetMetric.cppedittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppeditsrc/Adaptation/MeshAdapter.haddsrc/Adaptation/TargetMetric.heditsrc/Meshing/avro/MesherInterface_avro.cppeditsrc/Adaptation/MeshAdapter.cppeditsrc/Meshing/EGTess/XFieldDomain_impl.hedittest/sandbox/Adapt3D_DGBR2_AD_HemisphereCylinder_toy.cppeditsrc/Adaptation/MOESS/NodalMetrics.cppeditsrc/Meshing/EGADS/EGBody.heditsrc/Meshing/EGADS/EGModel.cppedittest/sandbox/Adapt3D_Mesh_Optimizer_toy.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cpptest/sandbox/Adapt3D_Mesh_Optimizer_toy.cpp9a768ed08b0762d4fd97146c7941af01f7350c211539623346000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduavro interface for delta wing case 2018-10-15 13:09:06 -04009a768ed08b0762d4fd97146c7941af01f7350c21avro interface for delta wing caseedittest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppsrc/Meshing/libMeshb/XField_libMeshb.htest/sandbox/Adapt3D_DG_AD_L2_MOESS_toy.cppsrc/Meshing/libMeshb/XFieldArea_libMeshb.cppsrc/Meshing/libMeshb/XFieldVolume_libMeshb.cpp3755abf6edb805ecf8b80ec72c01d055dd3ea2151539624222000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMinor cleanup 2018-10-15 13:23:42 -04003755abf6edb805ecf8b80ec72c01d055dd3ea215Minor cleanupeditsrc/Meshing/libMeshb/XFieldArea_libMeshb.cppedittest/sandbox/Adapt3D_DG_AD_L2_MOESS_toy.cppeditsrc/Meshing/libMeshb/XFieldVolume_libMeshb.cppeditsrc/Meshing/libMeshb/XField_libMeshb.htest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppsrc/Meshing/EGTess/XFieldDomain_impl.hsrc/Adaptation/TargetMetric.cpptest/unit/Meshing/avro/CMakeLists.txtsrc/Meshing/avro/MesherInterface_avro.cpptest/unit/Meshing/avro/MesherInterface_avro_btest.cppsrc/Meshing/EGTess/XFieldDomain.hCMakeInclude/Finds/FindAVRO.cmakeCMakeInclude/Dependencies.cmakeb2050ab7a9a04df67fe20cece88c4a22be3f93971539640225000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixes for running avro in parallel 2018-10-15 17:50:25 -0400b2050ab7a9a04df67fe20cece88c4a22be3f9397Fixes for running avro in paralleleditCMakeInclude/Finds/FindAVRO.cmakeedittest/unit/Meshing/avro/MesherInterface_avro_btest.cppeditsrc/Meshing/EGTess/XFieldDomain.hedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppeditsrc/Adaptation/TargetMetric.cppeditsrc/Meshing/EGTess/XFieldDomain_impl.heditsrc/Meshing/avro/MesherInterface_avro.cppedittest/unit/Meshing/avro/CMakeLists.txteditCMakeInclude/Dependencies.cmaketest/sandbox/Adapt2D_DGBR2_RANSSA_FlatPlate_toy.cppsrc/Adaptation/MOESS/ErrorModel.cppsrc/Meshing/refine/MultiScale_metric.hCMakeInclude/Builds/BuildREFINE.cmakesrc/pde/AnalyticFunction/ScalarFunction3D.cppCMakeInclude/Builds/BuildZOLTAN.cmakeCMakeInclude/Finds/FindZOLTAN.cmaketest/system/LocalSolve/CMakeLists.txtsrc/Field/Partition/XField_Lagrange.htest/unit/Meshing/refine/refine3D_btest.cppsrc/Discretization/DG/AlgebraicEquationSet_DGBR2_impl.htest/sandbox/Adapt3D_DG_AD_L2_MOESS_toy.cppCMakeInclude/Builds/BuildSUITESPARSE.cmakeCMakeInclude/Checks/ref_check.csrc/Meshing/refine/MultiScale_metric.cpptest/unit/Meshing/refine/CMakeLists.txtsrc/pde/AnalyticFunction/ScalarFunction3D.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixS_Instantiate.cppsrc/Adaptation/MOESS/ErrorModel_Elemental.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppsrc/Meshing/refine/MesherInterface_refine.hsrc/Adaptation/MOESS/SolverInterface_Galerkin.hCMakeInclude/Builds/BuildTETGEN.cmaketest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cppsrc/Meshing/refine/MesherInterface_refine.cppsrc/Meshing/libMeshb/XField_libMeshb.hCMakeInclude/CompilerFlags.cmakesrc/Meshing/refine/XField3D_refine.cpp.gitignoresrc/Meshing/refine/XField_refine.hsrc/Field/Partition/XField_Lagrange_Distribute_impl.hsrc/Adaptation/MOESS/SolverInterface_DGBR2.hsrc/Meshing/libMeshb/XFieldArea_libMeshb.cppCMakeInclude/Builds/BuildPARMETIS.cmakeCMakeInclude/Builds/BuildPETSC.cmakeCMakeInclude/Checks/CheckREFINE.cmakeCMakeInclude/Builds/BuildNLOPT.cmakesrc/Meshing/EPIC/MesherInterface_Epic.hsrc/Meshing/libMeshb/XFieldVolume_libMeshb.cppsrc/Discretization/DG/AlgebraicEquationSet_DGBR2.hsrc/Adaptation/MeshAdapter.hCMakeInclude/Finds/FindREFINE.cmaketest/system/LocalSolve/ElementDualLocalSolve3D_Galerkin_Stabilized_Triangle_AD_btest.cppCMakeInclude/Builds/BuildCBLAS.cmakeCMakeInclude/Builds/BuildTRIANGLE.cmaketest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppsrc/Discretization/Galerkin/Stabilization_Galerkin.htest/unit/Field/Element/ElementProjection_L2_Triangle_btest.cppsrc/Meshing/refine/MesherInterface_refineParams.cpptest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppsrc/Meshing/EPIC/MesherInterface_Epic.cppsrc/Meshing/refine/CMakeLists.txtfbb4679eec625ee33ec53742c227160932a724711539640679000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edumerge conflict 2018-10-15 17:57:59 -0400fbb4679eec625ee33ec53742c227160932a72471merge conflictedit.gitignoreeditCMakeInclude/Builds/BuildCBLAS.cmakeeditCMakeInclude/Builds/BuildTRIANGLE.cmakeedittest/system/LocalSolve/CMakeLists.txtedittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppeditsrc/Meshing/EPIC/MesherInterface_Epic.cppeditsrc/Meshing/libMeshb/XField_libMeshb.heditCMakeInclude/CompilerFlags.cmakeeditCMakeInclude/Builds/BuildSUITESPARSE.cmakeeditsrc/Discretization/DG/AlgebraicEquationSet_DGBR2.heditsrc/Discretization/DG/AlgebraicEquationSet_DGBR2_impl.heditsrc/pde/AnalyticFunction/ScalarFunction3D.cppeditCMakeInclude/Checks/CheckREFINE.cmakeeditCMakeInclude/Builds/BuildPARMETIS.cmakeeditsrc/Adaptation/MOESS/ErrorModel.cppeditCMakeInclude/Builds/BuildTETGEN.cmakeedittest/unit/Field/Element/ElementProjection_L2_Triangle_btest.cppeditsrc/Meshing/refine/MesherInterface_refineParams.cppeditsrc/Meshing/refine/XField3D_refine.cppeditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixS_Instantiate.cppeditsrc/Adaptation/MOESS/SolverInterface_DGBR2.hedittest/unit/Meshing/refine/CMakeLists.txteditCMakeInclude/Checks/ref_check.ceditsrc/Meshing/libMeshb/XFieldVolume_libMeshb.cppeditsrc/Field/Partition/XField_Lagrange.heditsrc/Meshing/refine/MesherInterface_refine.hedittest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cppeditCMakeInclude/Builds/BuildPETSC.cmakeeditsrc/Discretization/Galerkin/Stabilization_Galerkin.heditsrc/Meshing/refine/XField_refine.heditCMakeInclude/Builds/BuildNLOPT.cmakeeditsrc/Adaptation/MeshAdapter.heditsrc/Field/Partition/XField_Lagrange_Distribute_impl.hedittest/unit/Meshing/refine/refine3D_btest.cppeditsrc/Adaptation/MOESS/SolverInterface_Galerkin.heditsrc/Meshing/libMeshb/XFieldArea_libMeshb.cppaddtest/sandbox/Adapt3D_DG_AD_L2_MOESS_toy.cppeditsrc/Meshing/refine/MesherInterface_refine.cppedittest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppeditCMakeInclude/Finds/FindREFINE.cmakeeditsrc/Meshing/EPIC/MesherInterface_Epic.heditsrc/Meshing/refine/CMakeLists.txtaddsrc/Meshing/refine/MultiScale_metric.hedittest/system/LocalSolve/ElementDualLocalSolve3D_Galerkin_Stabilized_Triangle_AD_btest.cppaddCMakeInclude/Builds/BuildZOLTAN.cmakeaddCMakeInclude/Finds/FindZOLTAN.cmakeaddsrc/Meshing/refine/MultiScale_metric.cppedittest/sandbox/Adapt2D_DGBR2_RANSSA_FlatPlate_toy.cppeditsrc/Adaptation/MOESS/ErrorModel_Elemental.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppeditCMakeInclude/Builds/BuildREFINE.cmakeeditsrc/pde/AnalyticFunction/ScalarFunction3D.htest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppsrc/Meshing/EGTess/XFieldDomain_impl.hsrc/Meshing/EGTess/XFieldDomain.htest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppba6382e9ccad8d5c4f0842be45c6bf1c0a58aa631539696031000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduboundary conditions in the correct order... 2018-10-16 09:20:31 -0400ba6382e9ccad8d5c4f0842be45c6bf1c0a58aa63boundary conditions in the correct order...edittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppeditsrc/Meshing/EGTess/XFieldDomain_impl.heditsrc/Meshing/EGTess/XFieldDomain.hedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppsrc/Meshing/EGTess/XFieldDomain_impl.hsrc/Adaptation/TargetMetric.cppsrc/Meshing/EGTess/XFieldDomain.htest/unit/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange_btest.cpptest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cpp55b0671a806f44b06c3c0593ad98f9b8e931126b1539697321000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduxfielddomain constructor when sans_avro not defined, warning fixes 2018-10-16 09:42:01 -040055b0671a806f44b06c3c0593ad98f9b8e931126bxfielddomain constructor when sans_avro not defined, warning fixesedittest/unit/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange_btest.cppedittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppeditsrc/Adaptation/TargetMetric.cppeditsrc/Meshing/EGTess/XFieldDomain.heditsrc/Meshing/EGTess/XFieldDomain_impl.hsrc/Meshing/EGTess/XFieldDomain_impl.h78fd7566203f8b8d5ab384cb37aa82c50c842d061539697574000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edulingering comma 2018-10-16 09:46:14 -040078fd7566203f8b8d5ab384cb37aa82c50c842d06lingering commaeditsrc/Meshing/EGTess/XFieldDomain_impl.htest/unit/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange_btest.cpp0d8c70bf8ec5ab88bfbb203587da51f5438e17731539701728000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduforgot to comment some testing things that dont work 2018-10-16 10:55:28 -04000d8c70bf8ec5ab88bfbb203587da51f5438e1773forgot to comment some testing things that dont workedittest/unit/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange_btest.cppsrc/Discretization/Galerkin/AlgebraicEquationSet_Project.hCMakeInclude/CompilerFlags.cmakesrc/Meshing/refine/MesherInterface_refine.hCMakeInclude/Builds/BuildREFINE.cmakesrc/Meshing/refine/MesherInterface_refineParams.cppCMakeInclude/Dependencies.cmakesrc/Meshing/refine/MesherInterface_refine.cppsrc/Meshing/refine/CMakeLists.txt88ca63ddb2e615776d753d72111977a6fcd424e41539704825000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduVarious fixes to refine. L2 CG projection works in parallel 2018-10-16 08:47:05 -070088ca63ddb2e615776d753d72111977a6fcd424e4Various fixes to refine. L2 CG projection works in paralleleditCMakeInclude/Dependencies.cmakeeditsrc/Meshing/refine/MesherInterface_refine.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Project.heditsrc/Meshing/refine/MesherInterface_refineParams.cppeditsrc/Meshing/refine/MesherInterface_refine.cppeditCMakeInclude/Builds/BuildREFINE.cmakeeditsrc/Meshing/refine/CMakeLists.txteditCMakeInclude/CompilerFlags.cmakesrc/Meshing/refine/XField3D_refine.cpptest/sandbox/Adapt3D_DG_AD_L2_MOESS_toy.cppCMakeInclude/Checks/CheckREFINE.cmaketest/sandbox/Adapt3D_CG_AD_L2_MOESS_toy.cpptest/unit/Meshing/refine/CMakeLists.txttest/sandbox/Adapt3D_CG_AD_L2_MultiScale_toy.cppCMakeInclude/MakeSummaryFile.cmakesrc/Meshing/refine/MesherInterface_refine.cppCMakeInclude/Dependencies.cmakeCMakeInclude/Finds/FindREFINE.cmakesrc/Meshing/refine/CMakeLists.txt10f7218ef359c219db1db4b52b65d1c01d948a7c1539722797000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixes for refine. L2 cases to run for paper. 2018-10-16 16:46:37 -040010f7218ef359c219db1db4b52b65d1c01d948a7cFixes for refine. L2 cases to run for paper.addtest/sandbox/Adapt3D_CG_AD_L2_MultiScale_toy.cppeditsrc/Meshing/refine/XField3D_refine.cppeditCMakeInclude/MakeSummaryFile.cmakeedittest/unit/Meshing/refine/CMakeLists.txteditsrc/Meshing/refine/MesherInterface_refine.cppaddtest/sandbox/Adapt3D_CG_AD_L2_MOESS_toy.cppeditsrc/Meshing/refine/CMakeLists.txteditCMakeInclude/Dependencies.cmakeeditCMakeInclude/Finds/FindREFINE.cmakeeditCMakeInclude/Checks/CheckREFINE.cmakeedittest/sandbox/Adapt3D_DG_AD_L2_MOESS_toy.cpptest/unit/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange_btest.cppsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.hc70c8e82b9d4879b09c427ead29365ba3673047b1539723106000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed warnings 2018-10-16 16:51:46 -0400c70c8e82b9d4879b09c427ead29365ba3673047bFixed warningseditsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.hedittest/unit/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange_btest.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppfa62888da657a29dc95b60d9004586465562f19b1539785424000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUsing DirectLU for DeltaWing adjoint 2018-10-17 10:10:24 -0400fa62888da657a29dc95b60d9004586465562f19bUsing DirectLU for DeltaWing adjointedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppsrc/Meshing/EGTess/XFieldDomain_impl.htest/sandbox/Adapt2D_Mesh_Optimizer_toy.cppsrc/Meshing/avro/MesherInterface_avro.cppsrc/Meshing/EGTess/XFieldDomain.cpptest/sandbox/Adapt3D_Mesh_Optimizer_toy.cpptest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_avro_toy.cpptest/sandbox/Adapt3D_DGBR2_AD_HemisphereCylinder_toy.cppsrc/Meshing/EGTess/XFieldDomain.hsrc/Meshing/avro/MesherInterface_avro.htest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppCMakeInclude/Finds/FindAVRO.cmakeaca641ea64ae4414d94eff1b4f049ae663d38e5f1539789622000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edumods to avro interface, added Curved parameter to omit visiblity checks on geometry 2018-10-17 11:20:22 -0400aca641ea64ae4414d94eff1b4f049ae663d38e5fmods to avro interface, added Curved parameter to omit visiblity checks on geometryedittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppedittest/sandbox/Adapt2D_Mesh_Optimizer_toy.cppedittest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppeditsrc/Meshing/EGTess/XFieldDomain.heditsrc/Meshing/avro/MesherInterface_avro.cppeditsrc/Meshing/avro/MesherInterface_avro.heditCMakeInclude/Finds/FindAVRO.cmakeeditsrc/Meshing/EGTess/XFieldDomain_impl.hedittest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_avro_toy.cppedittest/sandbox/Adapt3D_DGBR2_AD_HemisphereCylinder_toy.cppeditsrc/Meshing/EGTess/XFieldDomain.cppsrc/Meshing/refine/XField3D_refine.cpptest/sandbox/Adapt3D_DG_AD_L2_MOESS_toy.cppCMakeInclude/Builds/BuildGEOGRAM.cmakeCMakeInclude/Builds/BuildREFINE.cmakeCMakeInclude/Builds/BuildSUITESPARSE.cmakesrc/Field/Partition/XField_Lagrange_Distribute_impl.hCMakeInclude/Builds/BuildEGADS.cmaketest/unit/Meshing/refine/CMakeLists.txtCMakeInclude/Builds/BuildLAPACK.cmakeCMakeInclude/Builds/BuildZOLTAN.cmakeCMakeInclude/Builds/BuildCBLAS.cmakeCMakeInclude/Builds/BuildPARMETIS.cmakeCMakeInclude/Builds/BuildPETSC.cmakeCMakeInclude/Builds/BuildTRIANGLE.cmakeCMakeInclude/Builds/BuildBoost.cmaketest/sandbox/Adapt3D_CG_AD_L2_MOESS_toy.cppCMakeInclude/Builds/BuildNLOPT.cmakeCMakeInclude/Builds/BuildTETGEN.cmaketest/sandbox/Adapt3D_CG_AD_L2_MultiScale_toy.cppCMakeInclude/MakeSummaryFile.cmakesrc/Meshing/refine/MesherInterface_refine.cpp9117e4f412de25c7617fce823daa9ef8afe5dea01539808056000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduVarious fixes to refine interface and AD L2 cases. 2018-10-17 16:27:36 -04009117e4f412de25c7617fce823daa9ef8afe5dea0Various fixes to refine interface and AD L2 cases.editCMakeInclude/Builds/BuildTETGEN.cmakeeditCMakeInclude/Builds/BuildCBLAS.cmakeeditCMakeInclude/MakeSummaryFile.cmakeeditsrc/Meshing/refine/XField3D_refine.cppedittest/sandbox/Adapt3D_DG_AD_L2_MOESS_toy.cppedittest/sandbox/Adapt3D_CG_AD_L2_MOESS_toy.cppeditCMakeInclude/Builds/BuildGEOGRAM.cmakeeditCMakeInclude/Builds/BuildREFINE.cmakeeditCMakeInclude/Builds/BuildPETSC.cmakeeditCMakeInclude/Builds/BuildSUITESPARSE.cmakeeditCMakeInclude/Builds/BuildEGADS.cmakeeditCMakeInclude/Builds/BuildLAPACK.cmakeeditCMakeInclude/Builds/BuildZOLTAN.cmakeeditCMakeInclude/Builds/BuildTRIANGLE.cmakeeditsrc/Field/Partition/XField_Lagrange_Distribute_impl.heditCMakeInclude/Builds/BuildNLOPT.cmakeeditsrc/Meshing/refine/MesherInterface_refine.cppedittest/sandbox/Adapt3D_CG_AD_L2_MultiScale_toy.cppeditCMakeInclude/Builds/BuildBoost.cmakeedittest/unit/Meshing/refine/CMakeLists.txteditCMakeInclude/Builds/BuildPARMETIS.cmakeDeveloperEmailAddresses71e208c41070a635d53cf914a7a8c3ca47a576701539811134000https://acdl.mit.edu/csi/user/mlaroccamlaroccamlarocca@mit.eduAdded mlarocca@mit.edu to DeveloperEmailAddresses 2018-10-17 17:18:54 -040071e208c41070a635d53cf914a7a8c3ca47a57670Added mlarocca@mit.edu to DeveloperEmailAddresseseditDeveloperEmailAddressessrc/pde/IBL/PDEIBLUniField.hsrc/PanelMethod/ProjectionToQauxi_IBL.h232fb94ce6a7156fe671e22ffcca2174e1330ca31539819268000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRevived UniField IBL. Verified system test on laminarAirfoil+turbulentWake coupled solution case 2018-10-17 19:34:28 -0400232fb94ce6a7156fe671e22ffcca2174e1330ca3Revived UniField IBL. Verified system test on laminarAirfoil+turbulentWake coupled solution caseeditsrc/pde/IBL/PDEIBLUniField.heditsrc/PanelMethod/ProjectionToQauxi_IBL.hsrc/pde/NDConvert/PDENDConvertSpace2D.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test.txtsrc/pde/IBL/PDEIBLUniField.hf47114123731f99829d4535a1f6e39466472b90b1539820186000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduUpdated pyrite file. Also revived and verified intra-cell forced transition case of UniField IBL 2018-10-17 19:49:46 -0400f47114123731f99829d4535a1f6e39466472b90bUpdated pyrite file. Also revived and verified intra-cell forced transition case of UniField IBLedittest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test.txteditsrc/pde/NDConvert/PDENDConvertSpace2D.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppeditsrc/pde/IBL/PDEIBLUniField.htest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne64_a0_unifield.txttest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpp48305f8a9b4893cbf343cd2c3e209df1750419741539820592000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduMinor cleanup 2018-10-17 19:56:32 -040048305f8a9b4893cbf343cd2c3e209df175041974Minor cleanupedittest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne64_a0_unifield.txtedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/system/IO/CodeConsistency/IBL/naca0004_ne78.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne1024_a0_unifield.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne96_a0_unifield.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne512_a0_unifield.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne640_a0_unifield.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne128_a0_unifield.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne360_a0_unifield.txttest/system/IO/CodeConsistency/IBL/naca0004_ne78_wake_a0.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne800_a0_unifield.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne256_a0_unifield.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne192_a0_unifield.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne64_a0_unifield.txttest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne2048_a0_unifield.txt320b2e718f90d5b299ac2b1f76d16b8950ef45241539824291000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduCommited: ready to run UniField IBL intra-cell forced transition in mass 2018-10-17 20:58:11 -0400320b2e718f90d5b299ac2b1f76d16b8950ef4524Commited: ready to run UniField IBL intra-cell forced transition in massaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne192_a0_unifield.txtdeletetest/system/IO/CodeConsistency/IBL/naca0004_ne78_wake_a0.txtaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne512_a0_unifield.txtdeletetest/system/IO/CodeConsistency/IBL/naca0004_ne78.txtedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne1024_a0_unifield.txtaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne2048_a0_unifield.txtaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne96_a0_unifield.txtaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne800_a0_unifield.txtaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne640_a0_unifield.txtaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne128_a0_unifield.txtaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne256_a0_unifield.txtaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne360_a0_unifield.txtedittest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne64_a0_unifield.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne128_a0.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne256_a0.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne360_a0.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne96_a0.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne800_a0.txttest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne192_a0.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne640_a0.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne2048_a0.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne1024_a0.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne512_a0.txtc26dd4a1c7dc63e708a9536487980fc2159dca441539826339000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduCommitted in order to run grid refinement in sweep of duplicate-field IBL intra-cell forced transition. IO files to be cleaned up later 2018-10-17 21:32:19 -0400c26dd4a1c7dc63e708a9536487980fc2159dca44Committed in order to run grid refinement in sweep of duplicate-field IBL intra-cell forced transition. IO files to be cleaned up lateraddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne192_a0.txtedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne512_a0.txtaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne360_a0.txtaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne2048_a0.txtaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne128_a0.txtaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne800_a0.txtaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne1024_a0.txtaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne256_a0.txtaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne640_a0.txtaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne96_a0.txtsrc/Meshing/refine/MesherInterface_refine.cppsrc/Meshing/EPIC/MesherInterface_Epic.cppsrc/Meshing/FeFloa/MesherInterface_FeFloa.cpp3012bbe4b14ea59425bc28b971915091e08163981539831258000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdates for latest fefloa 2018-10-17 22:54:18 -04003012bbe4b14ea59425bc28b971915091e0816398Updates for latest fefloaeditsrc/Meshing/refine/MesherInterface_refine.cppeditsrc/Meshing/FeFloa/MesherInterface_FeFloa.cppeditsrc/Meshing/EPIC/MesherInterface_Epic.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppbdde4f8bfe667840f9aec3ee7157c9483115d41b1539877410000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed a bug in grid convergence running script 2018-10-18 11:43:30 -0400bdde4f8bfe667840f9aec3ee7157c9483115d41bFixed a bug in grid convergence running scriptedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.cpptest/unit/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange_btest.cpp8ae5567c13c0c77cd7287b4c8184e1295759ecc71539882514000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edulagrange basis function on pentatopes with unit tests 2018-10-18 13:08:34 -04008ae5567c13c0c77cd7287b4c8184e1295759ecc7lagrange basis function on pentatopes with unit testseditsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.cppedittest/unit/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange_btest.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cpptest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppCMakeInclude/Finds/FindAVRO.cmaketest/sandbox/Adapt2D_Mesh_Optimizer_toy.cppd7dc431689dec790f22b078dd328904cc8bcf02f1539882551000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.educhange to avro interface 2018-10-18 13:09:11 -0400d7dc431689dec790f22b078dd328904cc8bcf02fchange to avro interfaceedittest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppeditCMakeInclude/Finds/FindAVRO.cmakeedittest/sandbox/Adapt2D_Mesh_Optimizer_toy.cppedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppsrc/Meshing/EGTess/XFieldDomain_impl.hsrc/Meshing/EGADS/EGObject.hsrc/Meshing/avro/MesherInterface_avro.cppsrc/Meshing/EGTess/XFieldDomain.cpptest/unit/Meshing/avro/MesherInterface_avro_btest.cppsrc/Meshing/EGTess/XFieldDomain.hsrc/Meshing/EGADS/EGObject.cppsrc/Meshing/refine/MesherInterface_refine.cppsrc/Meshing/EPIC/MesherInterface_Epic.cppsrc/Meshing/FeFloa/MesherInterface_FeFloa.cppeb73408657ccac8e6acb2c2af8cd65d930182a6f1539896121000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAll kinds of fixes 2018-10-18 16:55:21 -0400eb73408657ccac8e6acb2c2af8cd65d930182a6fAll kinds of fixeseditsrc/Meshing/EGTess/XFieldDomain.heditsrc/Meshing/FeFloa/MesherInterface_FeFloa.cppeditsrc/Meshing/EGADS/EGObject.cppeditsrc/Meshing/EGTess/XFieldDomain.cppeditsrc/Meshing/avro/MesherInterface_avro.cppeditsrc/Meshing/refine/MesherInterface_refine.cppeditsrc/Meshing/EGADS/EGObject.hedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppeditsrc/Meshing/EPIC/MesherInterface_Epic.cppedittest/unit/Meshing/avro/MesherInterface_avro_btest.cppeditsrc/Meshing/EGTess/XFieldDomain_impl.htest/system/IO/CodeConsistency/IBL/naca0004_ne4096.txttest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne4096_a0_unifield.txttest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne4096_a0.txttest/system/IO/CodeConsistency/IBL/naca0004_ne4096_wake_a0.txt8086533f971eebbb4eb608a94a019fe741f4501c1539908792000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded a finer grid test case 2018-10-18 20:26:32 -04008086533f971eebbb4eb608a94a019fe741f4501cAdded a finer grid test caseedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppaddtest/system/IO/CodeConsistency/IBL/naca0004_ne4096_wake_a0.txtaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne4096_a0_unifield.txtedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppaddtest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne4096_a0.txtaddtest/system/IO/CodeConsistency/IBL/naca0004_ne4096.txtsrc/Field/Field_CG_CellConstructor.hsrc/Meshing/EGADS/EGModel.hsrc/Field/Partition/XField_Lagrange.cppsrc/Field/XFieldSpacetime_checkGrid_impl.htest/unit/UnitGrids/CMakeLists.txttest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppsrc/Field/FieldSpacetime_CG_BoundaryTrace.hsrc/Field/Element/ElementAssociativitySpacetime.hsrc/Field/FieldSpacetime_CG_Trace_Instantiate_4D.cppsrc/Field/XFieldSpacetime.hsrc/Field/FieldSpacetime_CG_BoundaryFrame.hsrc/BasisFunction/BasisFunctionSpacetime_Projection.hsrc/LinearAlgebra/DenseLinAlg/StaticSize/Eigen/MatrixSymS_Eigen_4x4.cpptest/unit/UnitGrids/XField_KuhnFreudenthal.htest/unit/UnitGrids/XField_KuhnFreudenthal.cppsrc/Adaptation/MOESS/ReferenceElementCost.hsrc/Field/FieldSpacetime_CG_Cell_Instantiate_4D.cppsrc/Field/CMakeLists.txtsrc/Meshing/avro/MesherInterface_avro.cppsrc/Field/XFieldVolume_Traits.hsrc/Meshing/EGTess/XFieldDomain.cppsrc/Adaptation/MOESS/CostModel_LogEuclidean.cppsrc/Field/FieldSpacetime_CG_BoundaryTrace_impl.hsrc/Meshing/EGADS/EGModel.cppsrc/Field/Field_CG_TraceConstructor.hsrc/Field/FieldSpacetime_CG_Cell.hsrc/Adaptation/MOESS/CostModel_FeFloa.cppsrc/Field/FieldSpacetime_CG_Cell_impl.htest/unit/UnitGrids/XField_KuhnFreudenthal_btest.cppsrc/Field/XFieldSpacetime_impl.hsrc/Field/FieldBase_impl.hsrc/LinearAlgebra/DenseLinAlg/CMakeLists.txtsrc/Field/FieldSpacetime_CG_Trace.hsrc/Adaptation/MOESS/NodalMetrics.cppsrc/Field/FieldSpacetime_CG_InteriorTrace_impl.hsrc/Field/FieldSpacetime_CG_BoundaryTrace_Instantiate_4D.cppsrc/Adaptation/TargetMetric.cppsrc/Meshing/EGADS/EGBody.cppsrc/Field/XFieldSpacetime_buildFrom_impl.hsrc/Meshing/EGADS/EGBody.hsrc/Field/Field_NodalView_Spacetime.cppsrc/Field/FieldSpacetime_CG_Trace_impl.hsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_Det.hsrc/Field/FieldSpacetime_CG_InteriorTrace.hsrc/Field/XFieldSpacetime_Instantiate_4D.cppsrc/Field/FieldSpacetime_Instantiate_4D.cppsrc/Discretization/IntegrateCellGroups.hsrc/Field/FieldSpacetime_CG_InteriorTrace_Instantiate_4D.cpp2ed30ae09bc939a77dbdca5f7e943112fc3f7bb51539911669000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edu4d instantiations, still undefined refs with field & element associativity & some matrix stuff... 2018-10-18 21:14:29 -04002ed30ae09bc939a77dbdca5f7e943112fc3f7bb54d instantiations, still undefined refs with field & element associativity & some matrix stuff...addsrc/Field/FieldSpacetime_CG_Trace_impl.haddsrc/Field/XFieldSpacetime_impl.haddsrc/Field/XFieldSpacetime_Instantiate_4D.cppeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_Det.heditsrc/Field/Field_CG_TraceConstructor.haddsrc/Field/FieldSpacetime_CG_BoundaryTrace_impl.heditsrc/Meshing/EGTess/XFieldDomain.cppeditsrc/Field/FieldBase_impl.heditsrc/Field/Partition/XField_Lagrange.cppaddsrc/Field/FieldSpacetime_CG_Cell.heditsrc/BasisFunction/BasisFunctionSpacetime_Projection.haddsrc/Field/XFieldSpacetime_buildFrom_impl.heditsrc/Adaptation/MOESS/NodalMetrics.cppaddtest/unit/UnitGrids/XField_KuhnFreudenthal.cppeditsrc/Adaptation/MOESS/CostModel_FeFloa.cppeditsrc/Field/FieldSpacetime_Instantiate_4D.cppaddsrc/Field/Field_NodalView_Spacetime.cppaddsrc/Field/FieldSpacetime_CG_InteriorTrace_impl.haddsrc/LinearAlgebra/DenseLinAlg/StaticSize/Eigen/MatrixSymS_Eigen_4x4.cppaddsrc/Field/XFieldSpacetime_checkGrid_impl.heditsrc/Meshing/EGADS/EGModel.haddsrc/Field/FieldSpacetime_CG_BoundaryTrace.heditsrc/LinearAlgebra/DenseLinAlg/CMakeLists.txteditsrc/Field/Element/ElementAssociativitySpacetime.haddsrc/Field/FieldSpacetime_CG_BoundaryFrame.heditsrc/Adaptation/MOESS/ReferenceElementCost.haddtest/unit/UnitGrids/XField_KuhnFreudenthal_btest.cppeditsrc/Field/XFieldSpacetime.haddsrc/Field/FieldSpacetime_CG_BoundaryTrace_Instantiate_4D.cppeditsrc/Adaptation/TargetMetric.cppedittest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppaddsrc/Field/FieldSpacetime_CG_Cell_Instantiate_4D.cppaddtest/unit/UnitGrids/XField_KuhnFreudenthal.heditsrc/Meshing/EGADS/EGBody.haddsrc/Field/FieldSpacetime_CG_InteriorTrace_Instantiate_4D.cppedittest/unit/UnitGrids/CMakeLists.txtaddsrc/Field/FieldSpacetime_CG_Trace.haddsrc/Field/FieldSpacetime_CG_Trace_Instantiate_4D.cppeditsrc/Discretization/IntegrateCellGroups.heditsrc/Adaptation/MOESS/CostModel_LogEuclidean.cppaddsrc/Field/FieldSpacetime_CG_Cell_impl.heditsrc/Field/CMakeLists.txteditsrc/Field/Field_CG_CellConstructor.heditsrc/Meshing/EGADS/EGModel.cppeditsrc/Meshing/avro/MesherInterface_avro.cppaddsrc/Field/FieldSpacetime_CG_InteriorTrace.heditsrc/Field/XFieldVolume_Traits.heditsrc/Meshing/EGADS/EGBody.cpptest/sandbox/Adapt3D_CG_AD_L2_MultiScale_toy.cppsrc/Meshing/EGTess/XFieldDomain_impl.h8d37006cc4d81ac45f19f6383aaa3a16ab93dce71539915356000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed warnings/errors 2018-10-18 22:15:56 -04008d37006cc4d81ac45f19f6383aaa3a16ab93dce7Fixed warnings/errorsedittest/sandbox/Adapt3D_CG_AD_L2_MultiScale_toy.cppeditsrc/Meshing/EGTess/XFieldDomain_impl.hsrc/Field/Field_CG_CellConstructor.cppsrc/Adaptation/MOESS/CostModel_FeFloa.cpptest/unit/UnitGrids/XField_KuhnFreudenthal_btest.cppsrc/Adaptation/MOESS/NodalMetrics.cppsrc/LinearAlgebra/DenseLinAlg/StaticSize/Eigen/MatrixSymS_Eigen_4x4.cppsrc/Adaptation/TargetMetric.cppsrc/Field/Element/ElementXFieldVolume_Instantiate_3D.cppsrc/Meshing/avro/MesherInterface_avro.cppsrc/Field/FieldSpacetime_CG_Cell_Instantiate_4D.cppsrc/Meshing/EGTess/XFieldDomain.cppsrc/Adaptation/MOESS/CostModel_LogEuclidean.cppsrc/Field/XFieldSpacetime_Instantiate_4D.cppsrc/Field/FieldSpacetime_Instantiate_4D.cppsrc/Field/XFieldVolume_Instantiate_4D.cppd99cecbb3795e08b905095ec3e90332696098ac91539954778000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduun-instantiated so i can test some things, previous push had wrong include 2018-10-19 09:12:58 -0400d99cecbb3795e08b905095ec3e90332696098ac9un-instantiated so i can test some things, previous push had wrong includeeditsrc/Adaptation/TargetMetric.cppeditsrc/Field/Field_CG_CellConstructor.cppedittest/unit/UnitGrids/XField_KuhnFreudenthal_btest.cppeditsrc/Field/FieldSpacetime_Instantiate_4D.cppeditsrc/Adaptation/MOESS/NodalMetrics.cppeditsrc/Field/XFieldSpacetime_Instantiate_4D.cppeditsrc/Meshing/avro/MesherInterface_avro.cppeditsrc/Meshing/EGTess/XFieldDomain.cppeditsrc/Adaptation/MOESS/CostModel_LogEuclidean.cppeditsrc/Field/XFieldVolume_Instantiate_4D.cppeditsrc/Field/Element/ElementXFieldVolume_Instantiate_3D.cppeditsrc/Field/FieldSpacetime_CG_Cell_Instantiate_4D.cppeditsrc/Adaptation/MOESS/CostModel_FeFloa.cppeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/Eigen/MatrixSymS_Eigen_4x4.cpptest/system/Adaptation/SolverInterface_DGAdvective_btest.cpp9f48ee7fbc8df3430fb3b01ddc282891b65e74881539954797000https://acdl.mit.edu/csi/user/ursachiursachiursachi@mit.eduSolver interface unit tests 2018-10-19 09:13:17 -04009f48ee7fbc8df3430fb3b01ddc282891b65e7488Solver interface unit testsedittest/system/Adaptation/SolverInterface_DGAdvective_btest.cpptest/system/Adaptation/SolverInterface_DGBR2_btest.cpp228799164dc319d4c74dcac1a8616faec9dc523c1539954851000https://acdl.mit.edu/csi/user/ursachiursachiursachi@mit.eduSolver interface unit test for DGBR2 2018-10-19 09:14:11 -0400228799164dc319d4c74dcac1a8616faec9dc523cSolver interface unit test for DGBR2edittest/system/Adaptation/SolverInterface_DGBR2_btest.cpptest/sandbox/Adapt2D_DGBR2_L2_ASExp_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_L2_ASExp_toy.cppsrc/pde/OutputCell_SolutionError.htest/system/Asymptotic/ErrorEstimateOrder_2D_CG_Triangle_AD_Boundary_btest.cpp38fa9bb023ad677eeba474d3034652b6a549998f1539959394000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edugetting final things off of devastator 2018-10-19 10:29:54 -040038fa9bb023ad677eeba474d3034652b6a549998fgetting final things off of devastatoraddtest/system/Asymptotic/ErrorEstimateOrder_2D_CG_Triangle_AD_Boundary_btest.cppaddsrc/pde/OutputCell_SolutionError.haddtest/sandbox/Adapt2D_DGBR2_L2_ASExp_toy.cppaddtest/sandbox/Adapt2D_Galerkin_Stabilized_L2_ASExp_toy.cppsrc/Meshing/EGTess/XFieldDomain.cppsrc/Meshing/EGTess/XFieldDomain_impl.h2222e5e864484a31200912a4eefe675e65b11ea21539961084000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edupremerge 2018-10-19 10:58:04 -04002222e5e864484a31200912a4eefe675e65b11ea2premergeeditsrc/Meshing/EGTess/XFieldDomain.cppeditsrc/Meshing/EGTess/XFieldDomain_impl.hsrc/Field/XFieldSpacetime_BoundaryTrace_Instantiate.cppsrc/Field/Field_CG_CellConstructor.cppsrc/Field/Partition/XField_Lagrange.cppsrc/Field/CMakeLists.txtsrc/Field/XFieldSpacetime_checkGrid_impl.hsrc/Field/Element/ElementAssociativitySpacetime.cppsrc/Field/Field_CG_Topology.hsrc/Field/Element/ElementAssociativitySpacetime.hsrc/Field/XFieldSpacetime_BoundaryTrace.h0c9fcdc0aba0c7c32f65f4ba8bb84e199b46310c1539964225000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edumissing instantiations, fixing a few undef references 2018-10-19 11:50:25 -04000c9fcdc0aba0c7c32f65f4ba8bb84e199b46310cmissing instantiations, fixing a few undef referenceseditsrc/Field/CMakeLists.txtaddsrc/Field/Element/ElementAssociativitySpacetime.cppeditsrc/Field/Partition/XField_Lagrange.cppeditsrc/Field/XFieldSpacetime_checkGrid_impl.heditsrc/Field/Field_CG_Topology.heditsrc/Field/Element/ElementAssociativitySpacetime.haddsrc/Field/XFieldSpacetime_BoundaryTrace.haddsrc/Field/XFieldSpacetime_BoundaryTrace_Instantiate.cppeditsrc/Field/Field_CG_CellConstructor.cpptest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cpp11d6228af743c6a50e8953012f612fa8cdfa27691539979707000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduRelaxed tolerance 2018-10-19 16:08:27 -040011d6228af743c6a50e8953012f612fa8cdfa2769Relaxed toleranceedittest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cppsrc/tools/system_call.cppsrc/tools/CMakeLists.txtsrc/tools/system_call.hsrc/Meshing/Embedding/MesherInterface_Embedding.cppsrc/Meshing/refine/MesherInterface_refine.cppsrc/Meshing/EPIC/MesherInterface_Epic.cppsrc/Meshing/FeFloa/MesherInterface_FeFloa.cppsrc/Meshing/refine/MesherInterface_refine_2D.cpp0f8bc14c3ad36aad27d90c2ac79d4ab8333deb781539980831000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUnified robuster system call function 2018-10-19 16:27:11 -04000f8bc14c3ad36aad27d90c2ac79d4ab8333deb78Unified robuster system call functioneditsrc/Meshing/refine/MesherInterface_refine.cppeditsrc/Meshing/Embedding/MesherInterface_Embedding.cppeditsrc/tools/CMakeLists.txteditsrc/Meshing/EPIC/MesherInterface_Epic.cppeditsrc/Meshing/FeFloa/MesherInterface_FeFloa.cppeditsrc/Meshing/refine/MesherInterface_refine_2D.cppaddsrc/tools/system_call.haddsrc/tools/system_call.cppsrc/Meshing/avro/MesherInterface_avro.cppsrc/Meshing/EGTess/XFieldDomain_impl.hsrc/Meshing/EGTess/XFieldDomain.hCMakeInclude/Finds/FindAVRO.cmake53c0166a41829f3f66891d3ff5233d32f9acfdce1539981234000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix mistakes I made related to label in XFieldDomain 2018-10-19 16:33:54 -040053c0166a41829f3f66891d3ff5233d32f9acfdceFix mistakes I made related to label in XFieldDomaineditCMakeInclude/Finds/FindAVRO.cmakeeditsrc/Meshing/EGTess/XFieldDomain_impl.heditsrc/Meshing/avro/MesherInterface_avro.cppeditsrc/Meshing/EGTess/XFieldDomain.htest/unit/LinearAlgebra/SparseLinAlg/SparseMatrix_CRS_MatrixS_btest.cppsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixS_Instantiate.cpptest/unit/LinearAlgebra/Heat1D_btest.h427d385ac6942686f924aa3ef78a7650bd921d031539990319000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed analyzer warnings 2018-10-19 19:05:19 -0400427d385ac6942686f924aa3ef78a7650bd921d03Fixed analyzer warningsedittest/unit/LinearAlgebra/SparseLinAlg/SparseMatrix_CRS_MatrixS_btest.cppedittest/unit/LinearAlgebra/Heat1D_btest.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixD_CRS_MatrixS_Instantiate.cpptest/unit/UnitGrids/CMakeLists.txtsrc/Field/Partition/LagrangeElementGroup.cpptest/unit/UnitGrids/XField_KuhnFreudenthal.htest/unit/UnitGrids/XField_KuhnFreudenthal.cpptest/unit/UnitGrids/XField_KuhnFreudenthal_btest.cpp8bb6e723c91dee7bac7853e5db6bfbb67dab73641540035977000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduprelim kuhn-freudenthal triangulation via avro 2018-10-20 07:46:17 -04008bb6e723c91dee7bac7853e5db6bfbb67dab7364prelim kuhn-freudenthal triangulation via avroedittest/unit/UnitGrids/XField_KuhnFreudenthal.hedittest/unit/UnitGrids/XField_KuhnFreudenthal_btest.cppeditsrc/Field/Partition/LagrangeElementGroup.cppedittest/unit/UnitGrids/CMakeLists.txtedittest/unit/UnitGrids/XField_KuhnFreudenthal.cppCMakeInclude/Builds/BuildPETSC.cmakeCMakeInclude/Builds/BuildNLOPT.cmakesrc/Meshing/refine/CMakeLists.txt24123d85abc2ff2fc1e0a02c5ce88d01726e1dd51540124161000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpgraded builds to latest NLOPT and PETSc. 2018-10-21 08:16:01 -040024123d85abc2ff2fc1e0a02c5ce88d01726e1dd5Upgraded builds to latest NLOPT and PETSc.editCMakeInclude/Builds/BuildNLOPT.cmakeeditCMakeInclude/Builds/BuildPETSC.cmakeeditsrc/Meshing/refine/CMakeLists.txttest/sandbox/Adapt2D_DGBR2_AD_ST_toy.cppsrc/Field/XFieldSpacetime.h3be6cc1858148c3eb2f9a09da15b86cbb068691e1540227376000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.eduCorrected comments, added filesysteming. 2018-10-22 12:56:16 -04003be6cc1858148c3eb2f9a09da15b86cbb068691eCorrected comments, added filesysteming.editsrc/Field/XFieldSpacetime.hedittest/sandbox/Adapt2D_DGBR2_AD_ST_toy.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cpptest/unit/BasisFunction/TraceToCellRefCoord_Pentatope_btest.cpptest/unit/UnitGrids/XField_KuhnFreudenthal.htest/unit/UnitGrids/XField_KuhnFreudenthal.cppsrc/BasisFunction/LagrangeDOFMap.htest/unit/UnitGrids/XField_KuhnFreudenthal_btest.cppsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.cpptest/unit/BasisFunction/LagrangeDOFMap_btest.cppsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cpp86a2ad5f8793a76ca895c9b8d13540ae1b531a171540232951000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edulagrange DOF map & trace2cellrefcoord + unit tests 2018-10-22 14:29:11 -040086a2ad5f8793a76ca895c9b8d13540ae1b531a17lagrange DOF map & trace2cellrefcoord + unit testseditsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.cppedittest/unit/UnitGrids/XField_KuhnFreudenthal.cppeditsrc/BasisFunction/LagrangeDOFMap.hedittest/unit/UnitGrids/XField_KuhnFreudenthal.hedittest/unit/BasisFunction/TraceToCellRefCoord_Pentatope_btest.cppedittest/unit/BasisFunction/LagrangeDOFMap_btest.cppedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppeditsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cppedittest/unit/UnitGrids/XField_KuhnFreudenthal_btest.cpptest/unit/UnitGrids/CMakeLists.txttest/unit/UnitGrids/XField4D_1Ptope_X1_1Group_btest.cpptest/unit/UnitGrids/XField4D_1Ptope_X1_1Group.htest/unit/UnitGrids/XField4D_1Ptope_X1_1Group.cppsrc/Topology/ElementTopology.h3eadd2335b886d1efab3c0fc06b870a54e7d32b61540243262000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.eduAdded some 4D stuff and some comments to help clarify things as I come back to them. 2018-10-22 17:21:02 -04003eadd2335b886d1efab3c0fc06b870a54e7d32b6Added some 4D stuff and some comments to help clarify things as I come back to them.edittest/unit/UnitGrids/CMakeLists.txtaddtest/unit/UnitGrids/XField4D_1Ptope_X1_1Group.haddtest/unit/UnitGrids/XField4D_1Ptope_X1_1Group_btest.cppeditsrc/Topology/ElementTopology.haddtest/unit/UnitGrids/XField4D_1Ptope_X1_1Group.cppsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.cpptest/unit/BasisFunction/TraceToCellRefCoord_Pentatope_btest.cpptest/unit/BasisFunction/LagrangeDOFMap_btest.cppsrc/BasisFunction/LagrangeDOFMap.hea2f939a21a5d950238e9a5efdb0cd528c7d4d581540243842000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edulagrange dof map testing 2018-10-22 17:30:42 -0400ea2f939a21a5d950238e9a5efdb0cd528c7d4d58lagrange dof map testingeditsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.cppeditsrc/BasisFunction/LagrangeDOFMap.hedittest/unit/BasisFunction/LagrangeDOFMap_btest.cppedittest/unit/BasisFunction/TraceToCellRefCoord_Pentatope_btest.cppsrc/Meshing/EGTess/EGTessModel_aflr4.cppCMakeInclude/Finds/FindAFLR.cmakesrc/Meshing/EGTess/CMakeLists.txtdf98ffdc78a5c09fb752ce257551afcb49828ff41540267564000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixes for latest AFLR 2018-10-23 00:06:04 -0400df98ffdc78a5c09fb752ce257551afcb49828ff4Fixes for latest AFLReditsrc/Meshing/EGTess/EGTessModel_aflr4.cppeditCMakeInclude/Finds/FindAFLR.cmakeeditsrc/Meshing/EGTess/CMakeLists.txtsrc/Meshing/refine/MultiScale_metric.cpptest/sandbox/Adapt3D_DG_AD_L2_MOESS_toy.cpptest/sandbox/Adapt3D_CG_AD_L2_MultiScale_toy.cppsrc/Meshing/refine/MultiScale_metric.htest/sandbox/Adapt3D_CG_AD_L2_MOESS_toy.cpp9c04be208668339378e0d1a8fc85f50aba4a04aa1540298571000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdates for L2 projection cases 2018-10-23 08:42:51 -04009c04be208668339378e0d1a8fc85f50aba4a04aaUpdates for L2 projection casesedittest/sandbox/Adapt3D_CG_AD_L2_MOESS_toy.cppeditsrc/Meshing/refine/MultiScale_metric.cppedittest/sandbox/Adapt3D_CG_AD_L2_MultiScale_toy.cppeditsrc/Meshing/refine/MultiScale_metric.hedittest/sandbox/Adapt3D_DG_AD_L2_MOESS_toy.cpptest/sandbox/Adapt3D_CG_AD_L2_MultiScale_toy.cpp72373cbca48b0448d7eb3e21b0d444c076ac1ca81540298700000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduIndexing bug 2018-10-23 08:45:00 -040072373cbca48b0448d7eb3e21b0d444c076ac1ca8Indexing bugedittest/sandbox/Adapt3D_CG_AD_L2_MultiScale_toy.cppsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.cpptest/unit/BasisFunction/LagrangeDOFMap_btest.cppsrc/BasisFunction/LagrangeDOFMap.h912cf8be4c03c9de0e2d52f2463e02864a4a9dc61540300934000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edure-order lattice coordinates so we have canonical vertices first 2018-10-23 09:22:14 -0400912cf8be4c03c9de0e2d52f2463e02864a4a9dc6re-order lattice coordinates so we have canonical vertices firsteditsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.cppedittest/unit/BasisFunction/LagrangeDOFMap_btest.cppeditsrc/BasisFunction/LagrangeDOFMap.hsrc/LinearAlgebra/DenseLinAlg/StaticSize/Eigen/MatrixSymS_Eigen_4x4.cppsrc/LinearAlgebra/DenseLinAlg/StaticSize/Eigen/MatrixSymS_Eigen_impl.hsrc/LinearAlgebra/DenseLinAlg/StaticSize/Eigen/MatrixSymS_Eigen_3x3.cppsrc/BasisFunction/LagrangeDOFMap.htest/unit/LinearAlgebra/DenseLinAlg/MatrixSymS_Eigen_btest.cppsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.cpptest/unit/BasisFunction/LagrangeDOFMap_btest.cppf7d8e753895f99206871d9a1d7bd88f1582459a71540305323000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edumoved eigenvalue calculation to impl + unit tests for 4x4 2018-10-23 10:35:23 -0400f7d8e753895f99206871d9a1d7bd88f1582459a7moved eigenvalue calculation to impl + unit tests for 4x4edittest/unit/BasisFunction/LagrangeDOFMap_btest.cppeditsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.cppedittest/unit/LinearAlgebra/DenseLinAlg/MatrixSymS_Eigen_btest.cppeditsrc/BasisFunction/LagrangeDOFMap.heditsrc/LinearAlgebra/DenseLinAlg/StaticSize/Eigen/MatrixSymS_Eigen_3x3.cppeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/Eigen/MatrixSymS_Eigen_4x4.cppaddsrc/LinearAlgebra/DenseLinAlg/StaticSize/Eigen/MatrixSymS_Eigen_impl.hsrc/Field/Element/ElementAssociativitySpacetimeConstructor.cppsrc/Field/Partition/LagrangeElementGroup.cpptest/unit/UnitGrids/XField_KuhnFreudenthal.cpptest/unit/IO/Field/ElementAssociativitySpacetime_Pentatope_pattern.txtsrc/Field/Element/ElementAssociativitySpacetime.hsrc/BasisFunction/BasisFunctionSpacetime.hsrc/Field/Element/ElementAssociativitySpacetime.cppsrc/Field/Element/ElementAssociativitySpacetimeConstructor.hsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.htest/unit/Field/Element/ElementAssociativitySpacetime_Pentatope_btest.cppdbbe9b77bede72286cef37d12ed7be8e4d26e9bf1540316444000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduspacetime element associativity + unit tests 2018-10-23 13:40:44 -0400dbbe9b77bede72286cef37d12ed7be8e4d26e9bfspacetime element associativity + unit testseditsrc/Field/Element/ElementAssociativitySpacetime.haddtest/unit/IO/Field/ElementAssociativitySpacetime_Pentatope_pattern.txtedittest/unit/UnitGrids/XField_KuhnFreudenthal.cppeditsrc/BasisFunction/BasisFunctionSpacetime.heditsrc/Field/Element/ElementAssociativitySpacetimeConstructor.haddtest/unit/Field/Element/ElementAssociativitySpacetime_Pentatope_btest.cppeditsrc/Field/Element/ElementAssociativitySpacetimeConstructor.cppeditsrc/Field/Element/ElementAssociativitySpacetime.cppeditsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.heditsrc/Field/Partition/LagrangeElementGroup.cpptest/sandbox/Adapt3D_CG_AD_L2_MultiScale_toy.cpp3b81b4dc0e96f16ea5341d3f2ab7c46380ba7a191540318411000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded Triple BL to the MultiScale test 2018-10-23 14:13:31 -04003b81b4dc0e96f16ea5341d3f2ab7c46380ba7a19Added Triple BL to the MultiScale testedittest/sandbox/Adapt3D_CG_AD_L2_MultiScale_toy.cpptest/unit/Field/Element/ElementXFieldVolume_4D_Tetrahedron_btest.cppsrc/Field/Element/ElementAssociativitySpacetimeConstructor.cppsrc/Field/Element/ElementXFieldVolume_impl.hsrc/Field/Element/ElementXFieldVolume_Instantiate_4D.cpptest/unit/LinearAlgebra/DenseLinAlg/MatrixS_SVD_btest.cppsrc/Field/Element/ElementXFieldVolume.hsrc/Field/Element/ElementXFieldVolume_Instantiate_3D.cppsrc/Field/CMakeLists.txtsrc/LinearAlgebra/DenseLinAlg/StaticSize/SVD/MatrixS_SVD_lapack_double.cppsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Real_Instantiate.cpptest/unit/Field/Element/ElementXFieldSpacetime_Pentatope_btest.cpp90497ea4545b8c8785e14a7c3c81bed3fdd09a451540326485000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edunormal of tet in 4d via svd 2018-10-23 16:28:05 -040090497ea4545b8c8785e14a7c3c81bed3fdd09a45normal of tet in 4d via svdedittest/unit/LinearAlgebra/DenseLinAlg/MatrixS_SVD_btest.cppeditsrc/Field/CMakeLists.txteditsrc/Field/Element/ElementXFieldVolume_impl.haddtest/unit/Field/Element/ElementXFieldVolume_4D_Tetrahedron_btest.cppeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/SVD/MatrixS_SVD_lapack_double.cppaddtest/unit/Field/Element/ElementXFieldSpacetime_Pentatope_btest.cppeditsrc/Field/Element/ElementAssociativitySpacetimeConstructor.cppeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Real_Instantiate.cppeditsrc/Field/Element/ElementXFieldVolume.heditsrc/Field/Element/ElementXFieldVolume_Instantiate_3D.cppaddsrc/Field/Element/ElementXFieldVolume_Instantiate_4D.cpptest/unit/Field/Element/ElementXFieldVolume_4D_Tetrahedron_btest.cppsrc/Field/Element/ElementXFieldVolume_Instantiate_4D.cppb6d5e0d9b61b7da47f1ba388ca9c2472cbc083e11540329037000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edufinish implementation of tet normal in 4d 2018-10-23 17:10:37 -0400b6d5e0d9b61b7da47f1ba388ca9c2472cbc083e1finish implementation of tet normal in 4deditsrc/Field/Element/ElementXFieldVolume_Instantiate_4D.cppedittest/unit/Field/Element/ElementXFieldVolume_4D_Tetrahedron_btest.cppsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_Det.htest/unit/LinearAlgebra/DenseLinAlg/MatrixS_Det_btest.cppsrc/Field/Element/ElementXFieldSpacetime_Instantiate_4D.cpptest/unit/Field/Element/ElementXFieldSpacetime_Pentatope_btest.cppsrc/Field/Element/ElementXFieldSpacetime_impl.h45ac84e3e8078a1ba7ce80b777460f31b4c9b7071540331058000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduelementxfieldspacetime jacobian + volume + unit tests 2018-10-23 17:44:18 -040045ac84e3e8078a1ba7ce80b777460f31b4c9b707elementxfieldspacetime jacobian + volume + unit testsedittest/unit/LinearAlgebra/DenseLinAlg/MatrixS_Det_btest.cppeditsrc/Field/Element/ElementXFieldSpacetime_Instantiate_4D.cppedittest/unit/Field/Element/ElementXFieldSpacetime_Pentatope_btest.cppeditsrc/Field/Element/ElementXFieldSpacetime_impl.heditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_Det.hsrc/Field/XFieldSpacetime_checkGrid_impl.htest/unit/UnitGrids/XField_KuhnFreudenthal.cppa758ee6ea087bd54514ff0d37f7e889451a9ae6e1540332058000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.educonstructed a 4d xfield! 2018-10-23 18:00:58 -0400a758ee6ea087bd54514ff0d37f7e889451a9ae6econstructed a 4d xfield!editsrc/Field/XFieldSpacetime_checkGrid_impl.hedittest/unit/UnitGrids/XField_KuhnFreudenthal.cpptest/unit/UnitGrids/XField_KuhnFreudenthal_btest.cpp3cdddaeaebacf9a0adbb54a4af314ca3b937440d1540332410000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduwrap kuhn freudenthal triangulation around SANS_AVRO ifdef 2018-10-23 18:06:50 -04003cdddaeaebacf9a0adbb54a4af314ca3b937440dwrap kuhn freudenthal triangulation around SANS_AVRO ifdefedittest/unit/UnitGrids/XField_KuhnFreudenthal_btest.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppd89efe7a9b63f39d34d348560dbd24178bbd46861540378857000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edustill cant remember how to trigger dummy commit... 2018-10-24 07:00:57 -0400d89efe7a9b63f39d34d348560dbd24178bbd4686still cant remember how to trigger dummy commit...edittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cpp94051e10eed5dc9586975037d964c7221e4949771540383919000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduand again... 2018-10-24 08:25:19 -040094051e10eed5dc9586975037d964c7221e494977and again...edittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cpptest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cpp67ae6386736681a836d70b24d0bd356f0e2a79501540386433000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edutrailing whitespace 2018-10-24 09:07:13 -040067ae6386736681a836d70b24d0bd356f0e2a7950trailing whitespaceedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppCMakeInclude/Finds/FindREFINE.cmake885820b13a5d5d8c358d874a97566059a47b2ea41540404345000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduTweak to refine build 2018-10-24 14:05:45 -0400885820b13a5d5d8c358d874a97566059a47b2ea4Tweak to refine buildeditCMakeInclude/Finds/FindREFINE.cmaketest/unit/Field/Element/CMakeLists.txte124486b84f19e335dde1c98d69055577a32cfbc1540405992000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduBumped up timing more for Hex Lagrange Cache test 2018-10-24 14:33:12 -0400e124486b84f19e335dde1c98d69055577a32cfbcBumped up timing more for Hex Lagrange Cache testedittest/unit/Field/Element/CMakeLists.txttest/fenv.h1476b2d53a9fb5dded5763c1b0cb73d416de16461540406743000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed missing feenableexcept on MacOS, thus enabling us to turn on USE_TRAP_FP in ccmake in order to catch NaNs in runtime. 2018-10-24 14:45:43 -04001476b2d53a9fb5dded5763c1b0cb73d416de1646Fixed missing feenableexcept on MacOS, thus enabling us to turn on USE_TRAP_FP in ccmake in order to catch NaNs in runtime.addtest/fenv.hsrc/pde/AnalyticFunction/ScalarFunction3D.htest/sandbox/Adapt3D_L2Project_MOESS_toy.cppsrc/Adaptation/MOESS/SolverInterface_L2Project.hsrc/Adaptation/MeshAdapter.cppfa2019d273473ee06a0c4a0facc1381e66ea45721540409177000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded L2 Projection solver interface 2018-10-24 15:26:17 -0400fa2019d273473ee06a0c4a0facc1381e66ea4572Added L2 Projection solver interfaceaddsrc/Adaptation/MOESS/SolverInterface_L2Project.heditsrc/Adaptation/MeshAdapter.cppeditsrc/pde/AnalyticFunction/ScalarFunction3D.haddtest/sandbox/Adapt3D_L2Project_MOESS_toy.cpptest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_MultiScale_toy.cppb501be9e30efdbe12505e583ae5488a9cb5ae75b1540409324000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduGalerkin TripleBoundaryLayer case using MultiScale metric 2018-10-24 15:28:44 -0400b501be9e30efdbe12505e583ae5488a9cb5ae75bGalerkin TripleBoundaryLayer case using MultiScale metricaddtest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_MultiScale_toy.cpptest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppb78ca0c1947f54b846aebba5d56eb4cbadc6d93f1540411748000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edugit jenkins not working...dummy commit 2018-10-24 16:09:08 -0400b78ca0c1947f54b846aebba5d56eb4cbadc6d93fgit jenkins not working...dummy commitedittest/sandbox/Adapt3D_Mesh_Optimizer_toy.cpptest/sandbox/Adapt3D_L2Project_MOESS_toy.cpp6a2f285bd5fa41a4b68dbb4979720ee9324564821540415612000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded CG for L2Projection 2018-10-24 17:13:32 -04006a2f285bd5fa41a4b68dbb4979720ee932456482Added CG for L2Projectionedittest/sandbox/Adapt3D_L2Project_MOESS_toy.cpptest/unit/pde/AnalyticFunction/AD_TripleBL_Solutions.nbtest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cpptest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cpp7a3158cc6f1f0ba56e9fc46516b5b6257e3da9251540418297000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduadded boundary functional and mathematica notebook for computing exact solutions 2018-10-24 17:58:17 -04007a3158cc6f1f0ba56e9fc46516b5b6257e3da925added boundary functional and mathematica notebook for computing exact solutionsaddtest/unit/pde/AnalyticFunction/AD_TripleBL_Solutions.nbedittest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppedittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cpptest/system/Asymptotic/ErrorEstimateOrder_2D_CG_Triangle_AD_Boundary_btest.cppc7edba4b6b998eb0aa3691817c9a65cf838ecf0a1540419239000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduremoving unworking test from repo 2018-10-24 18:13:59 -0400c7edba4b6b998eb0aa3691817c9a65cf838ecf0aremoving unworking test from repodeletetest/system/Asymptotic/ErrorEstimateOrder_2D_CG_Triangle_AD_Boundary_btest.cppsrc/Adaptation/MOESS/MOESSParams.h0f244c60d7a5027bd59c70071671293f7509dba51540419266000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educhanged default to 1.0 for Frob constraint 2018-10-24 18:14:26 -04000f244c60d7a5027bd59c70071671293f7509dba5changed default to 1.0 for Frob constrainteditsrc/Adaptation/MOESS/MOESSParams.hsrc/pde/AnalyticFunction/ScalarFunction1D.hsrc/pde/AnalyticFunction/ScalarFunction1D.cppd464b34e7c90d6af277f36c8454455d2ca9964d31540419283000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduadded scale and offset to 1D BL 2018-10-24 18:14:43 -0400d464b34e7c90d6af277f36c8454455d2ca9964d3added scale and offset to 1D BLeditsrc/pde/AnalyticFunction/ScalarFunction1D.heditsrc/pde/AnalyticFunction/ScalarFunction1D.cpptest/sandbox/Adapt3D_L2Project_MOESS_toy.cpp052a06fe10703a75182dbc06334714abb2dac19f1540421890000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMissing include 2018-10-24 18:58:10 -0400052a06fe10703a75182dbc06334714abb2dac19fMissing includeedittest/sandbox/Adapt3D_L2Project_MOESS_toy.cpptest/sandbox/Adapt3D_Mesh_Optimizer_toy.cpp0e32c58d55acda92b25b41214780920f66e3535a1540427736000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.educhange case 2018-10-24 20:35:36 -04000e32c58d55acda92b25b41214780920f66e3535achange caseedittest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppsrc/BasisFunction/ElementRidge.hsrc/Topology/ElementTopology.hsrc/BasisFunction/ElementRidge.cppec53b61adec10651fbe926b1fcbb798b6e7d3fc21540470508000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduelement ridge (TopoDim-2 elements) needed to construct 4d elems 2018-10-25 08:28:28 -0400ec53b61adec10651fbe926b1fcbb798b6e7d3fc2element ridge (TopoDim-2 elements) needed to construct 4d elemsaddsrc/BasisFunction/ElementRidge.heditsrc/Topology/ElementTopology.haddsrc/BasisFunction/ElementRidge.cppsrc/Meshing/EGADS/EGModel.cppsrc/Meshing/EGTess/XFieldDomain.cppsrc/Meshing/EGTess/XFieldDomain_impl.hsrc/Meshing/EGADS/EGModel.hsrc/Meshing/EGTess/XFieldDomain.h8f118ba23d54d3f377a95891acaa4ee0b89dfe041540470608000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduxfielddomain holds ego children not SANS::EGObject, reason is because tesseract geometry entities are not technically ego's though avro does define a unique ego for each entity 2018-10-25 08:30:08 -04008f118ba23d54d3f377a95891acaa4ee0b89dfe04xfielddomain holds ego children not SANS::EGObject, reason is because tesseract geometry entities are not technically ego's though avro does define a unique ego for each entityeditsrc/Meshing/EGADS/EGModel.cppeditsrc/Meshing/EGTess/XFieldDomain.cppeditsrc/Meshing/EGADS/EGModel.heditsrc/Meshing/EGTess/XFieldDomain.heditsrc/Meshing/EGTess/XFieldDomain_impl.hsrc/Adaptation/MOESS/NLOPT/ImpliedMetric_Optimizer_NLOPT.cppsrc/Adaptation/MOESS/NodalMetrics.cppsrc/Adaptation/MOESS/CostModel_FeFloa.cppsrc/Adaptation/TargetMetric.cppsrc/Adaptation/MOESS/ErrorModel.cppsrc/Field/Field_NodalView_Spacetime.cppsrc/Meshing/avro/MesherInterface_avro.cppsrc/Adaptation/MOESS/CostModel_LogEuclidean.cpp509dcfe4915d9756c0201670cda08fb3e6a210361540470778000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduinstantiations for 4d target metric matching 2018-10-25 08:32:58 -0400509dcfe4915d9756c0201670cda08fb3e6a21036instantiations for 4d target metric matchingeditsrc/Adaptation/MOESS/CostModel_FeFloa.cppeditsrc/Adaptation/MOESS/NLOPT/ImpliedMetric_Optimizer_NLOPT.cppeditsrc/Adaptation/MOESS/NodalMetrics.cppeditsrc/Adaptation/TargetMetric.cppeditsrc/Adaptation/MOESS/ErrorModel.cppeditsrc/Adaptation/MOESS/CostModel_LogEuclidean.cppeditsrc/Field/Field_NodalView_Spacetime.cppeditsrc/Meshing/avro/MesherInterface_avro.cpptest/unit/Field/Element/ElementXFieldVolume_4D_Tetrahedron_btest.cppsrc/Field/Field_CG_CellConstructor.hsrc/Field/Field_CG_CellConstructor.cppsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppsrc/Field/Element/ElementXFieldVolume_Instantiate_4D.cppsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatMul/MatMul_Native_Real.cppsrc/Meshing/Adaptive/AnalyticMetrics/MetricField.htest/unit/UnitGrids/XField_KuhnFreudenthal_btest.cppsrc/Adaptation/MeshAdapter.cppsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatMul/MatMul_Native_MatrixD_Instantiate.cppsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cpptest/unit/UnitGrids/XField_KuhnFreudenthal.htest/unit/UnitGrids/XField_KuhnFreudenthal.cppsrc/Adaptation/MOESS/ReferenceElementCost.hsrc/Field/Element/ElementXFieldSpacetime_Instantiate_4D.cpptest/unit/Field/Field4D_CG_Pentatope_btest.cppsrc/Field/Field_CG_Topology.hsrc/Field/FieldSpacetime_Instantiate_4D.cpptest/unit/BasisFunction/LagrangeDOFMap_btest.cppsrc/Field/CellToTraceAssociativity.cppsrc/Field/Field_CG_Topology.cppsrc/Field/Element/ElementXFieldJacobianEquilateral.cppsrc/BasisFunction/CMakeLists.txtefda5d1fe5b408bc1bd0adb88d0daf5d1e7304941540470841000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduCG field construction for TopoD4 meshes, tested on p=1 2018-10-25 08:34:01 -0400efda5d1fe5b408bc1bd0adb88d0daf5d1e730494CG field construction for TopoD4 meshes, tested on p=1editsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cppeditsrc/Adaptation/MeshAdapter.cppeditsrc/Field/Element/ElementXFieldSpacetime_Instantiate_4D.cppedittest/unit/UnitGrids/XField_KuhnFreudenthal.cppeditsrc/Field/Field_CG_Topology.heditsrc/BasisFunction/CMakeLists.txtaddtest/unit/Field/Field4D_CG_Pentatope_btest.cppeditsrc/Field/FieldSpacetime_Instantiate_4D.cppeditsrc/Field/Field_CG_CellConstructor.hedittest/unit/BasisFunction/LagrangeDOFMap_btest.cppedittest/unit/UnitGrids/XField_KuhnFreudenthal_btest.cppeditsrc/Field/Element/ElementXFieldVolume_Instantiate_4D.cppeditsrc/Adaptation/MOESS/ReferenceElementCost.hedittest/unit/Field/Element/ElementXFieldVolume_4D_Tetrahedron_btest.cppeditsrc/Field/Field_CG_Topology.cppedittest/unit/UnitGrids/XField_KuhnFreudenthal.heditsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatMul/MatMul_Native_MatrixD_Instantiate.cppeditsrc/Field/Field_CG_CellConstructor.cppeditsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatMul/MatMul_Native_Real.cppeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppeditsrc/Meshing/Adaptive/AnalyticMetrics/MetricField.heditsrc/Field/Element/ElementXFieldJacobianEquilateral.cppeditsrc/Field/CellToTraceAssociativity.cpptest/sandbox/Adapt4D_Mesh_Optimizer_toy.cppbe731f9d74be406c0c0c680e3067cd64e0a6e7071540470895000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edutarget metric matching in 4d sandbox 2018-10-25 08:34:55 -0400be731f9d74be406c0c0c680e3067cd64e0a6e707target metric matching in 4d sandboxaddtest/sandbox/Adapt4D_Mesh_Optimizer_toy.cppsrc/PanelMethod/ProjectionToQauxi_IBL.hsrc/pde/IBL/PDEIBLUniField.hsrc/pde/IBL/VarInterpret2D.hb74b6192badadada958d0cd40a9d68e9b1c0d35e1540472421000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactored projection to Qauxi_IBL by unifying implementations for DuplicateField and UniField IBL 2018-10-25 09:00:21 -0400b74b6192badadada958d0cd40a9d68e9b1c0d35eRefactored projection to Qauxi_IBL by unifying implementations for DuplicateField and UniField IBLeditsrc/PanelMethod/ProjectionToQauxi_IBL.heditsrc/pde/IBL/VarInterpret2D.heditsrc/pde/IBL/PDEIBLUniField.hsrc/BasisFunction/ElementRidge.hsrc/BasisFunction/ElementRidge.cppsrc/Field/Element/ElementXFieldJacobianEquilateral.cpptest/unit/BasisFunction/ElementRidge_btest.cppe82134984dae6bce94215b8d518ea7a46ff84b5c1540474381000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduelement ridge unit test + equilateral pentatope jacobian 2018-10-25 09:33:01 -0400e82134984dae6bce94215b8d518ea7a46ff84b5celement ridge unit test + equilateral pentatope jacobianeditsrc/Field/Element/ElementXFieldJacobianEquilateral.cppaddtest/unit/BasisFunction/ElementRidge_btest.cppeditsrc/BasisFunction/ElementRidge.cppeditsrc/BasisFunction/ElementRidge.hsrc/Field/Element/ElementXFieldSpacetime_Instantiate_4D.cpptest/sandbox/Adapt4D_Mesh_Optimizer_toy.cppsrc/Field/Element/ElementXFieldJacobianEquilateral.cppsrc/Field/Element/ElementXFieldJacobianEquilateral.mtest/unit/Field/Element/ElementXFieldSpacetime_Pentatope_btest.cpp127b1bcd62a8a07e01ade765e9e97b48a645a5211540481359000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edufixed bug with equilateral pentatope jacobian + matlab script + unit test on implied metric 2018-10-25 11:29:19 -0400127b1bcd62a8a07e01ade765e9e97b48a645a521fixed bug with equilateral pentatope jacobian + matlab script + unit test on implied metricedittest/unit/Field/Element/ElementXFieldSpacetime_Pentatope_btest.cppedittest/sandbox/Adapt4D_Mesh_Optimizer_toy.cppeditsrc/Field/Element/ElementXFieldJacobianEquilateral.cppeditsrc/Field/Element/ElementXFieldSpacetime_Instantiate_4D.cppaddsrc/Field/Element/ElementXFieldJacobianEquilateral.msrc/Adaptation/MOESS/MOESSParams.htest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cpptest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cpptest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_MultiScale_toy.cpp2944ed8960ed7778759ba38d94d06eb470101c441540482086000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduadded a boundary output for the triple BL, various clean ups, reverting to 0.25 for the default param 2018-10-25 11:41:26 -04002944ed8960ed7778759ba38d94d06eb470101c44added a boundary output for the triple BL, various clean ups, reverting to 0.25 for the default paramedittest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppedittest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_MultiScale_toy.cppedittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppeditsrc/Adaptation/MOESS/MOESSParams.hedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBLUniField_Panel_btest.cppsrc/pde/IBL/PDEIBLUniField.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBLUniField_Panel_btest.cppsrc/pde/IBL/SetSolnDofCell_IBL2D.htest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBLUniField_NACA0004_LamiBL_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppsrc/pde/IBL/BCIBLUniField.hsrc/pde/IBL/ElementProjectionIBLoutput_L2.hsrc/pde/IBL/PDEIBLUniField.hsrc/pde/IBL/IBLVarDataType2D.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cppsrc/pde/IBL/VarInterpret2D.hsrc/pde/IBL/BCIBLUniField.cpp622402af5615624eecb14d4712003f8658db960c1540484063000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactored UniField IBL variable interpreter. More work needed to propagate to everywhere oc the code base. 2018-10-25 12:14:23 -0400622402af5615624eecb14d4712003f8658db960cRefactored UniField IBL variable interpreter. More work needed to propagate to everywhere oc the code base.editsrc/pde/IBL/IBLVarDataType2D.hedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBLUniField_Panel_btest.cppeditsrc/pde/IBL/BCIBLUniField.cppeditsrc/pde/IBL/ElementProjectionIBLoutput_L2.heditsrc/pde/IBL/PDEIBLUniField.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cppeditsrc/pde/IBL/SetSolnDofCell_IBL2D.heditsrc/pde/IBL/BCIBLUniField.heditsrc/pde/IBL/VarInterpret2D.heditsrc/pde/IBL/PDEIBLUniField.hedittest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBLUniField_NACA0004_LamiBL_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBLUniField_Panel_btest.cppsrc/Field/Element/GalerkinWeightedIntegral_New.hsrc/PanelMethod/ProjectionToQauxi_IBL.htest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test.txtsrc/pde/IBL/PDEIBLUniField.hb3c5838fa72d2845f66a8bea5a54a7c3ae177ebe1540494134000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduMinor refactoring. Updated pyrite file. 2018-10-25 15:02:14 -0400b3c5838fa72d2845f66a8bea5a54a7c3ae177ebeMinor refactoring. Updated pyrite file.editsrc/Field/Element/GalerkinWeightedIntegral_New.hedittest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test.txteditsrc/pde/IBL/PDEIBLUniField.heditsrc/PanelMethod/ProjectionToQauxi_IBL.hsrc/Field/Element/GalerkinWeightedIntegral_New.hsrc/pde/IBL/PDEIBLUniField.hsrc/pde/IBL/ElementProjectionIBLoutput_L2.h23a512b59f9d817838e7c34af8a41589c2fb6abd1540496851000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactoring. Realizing that using ctau is fragile since log(ctau) is frequently needed to compute n_tilde but ctau can undershoot through below zero. 2018-10-25 15:47:31 -040023a512b59f9d817838e7c34af8a41589c2fb6abdRefactoring. Realizing that using ctau is fragile since log(ctau) is frequently needed to compute n_tilde but ctau can undershoot through below zero.editsrc/pde/IBL/PDEIBLUniField.heditsrc/pde/IBL/ElementProjectionIBLoutput_L2.heditsrc/Field/Element/GalerkinWeightedIntegral_New.hsrc/Field/FieldBaseLine_Instantiate.cpptest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_refactoring_Test.txtsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatMul/MatMul_Native_Real.cppsrc/pde/IBL/PDEIBLUniField.cppsrc/pde/IBL/SetSolnDofCell_IBL2D.htest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBLUniField_NACA0004_LamiBL_btest.cppsrc/BasisFunction/BasisFunctionLine_Projection.cppsrc/pde/IBL/BCIBLUniField.hsrc/pde/IBL/ElementProjectionIBLoutput_L2.hsrc/pde/IBL/PDEIBLUniField.hsrc/pde/IBL/IBLVarDataType2D.hsrc/Field/output_Tecplot.cpptest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne64_a0_unifield.txtsrc/Field/FieldLine_DG_Cell_Instantiate_2D.cppsrc/pde/IBL/VarInterpret2D.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cppsrc/Field/FieldLine_Instantiate_2D.cppsrc/pde/IBL/BCIBLUniField.cppdd5527c6d0eb9d71b8483faa7f3a30744744ffac1540564387000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactored UniField variable/eqns to use nt as a conservative quantity 1. Started a new pyrite file for coupled airfoilLaminar+wakeTurbulent case 2. Verified uncoupled IBL airfoil laminar case 2018-10-26 10:33:07 -0400dd5527c6d0eb9d71b8483faa7f3a30744744ffacRefactored UniField variable/eqns to use nt as a conservative quantityedittest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBLUniField_NACA0004_LamiBL_btest.cppeditsrc/pde/IBL/IBLVarDataType2D.heditsrc/Field/FieldLine_Instantiate_2D.cppeditsrc/pde/IBL/SetSolnDofCell_IBL2D.heditsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatMul/MatMul_Native_Real.cppeditsrc/pde/IBL/ElementProjectionIBLoutput_L2.heditsrc/pde/IBL/BCIBLUniField.cppeditsrc/pde/IBL/BCIBLUniField.heditsrc/BasisFunction/BasisFunctionLine_Projection.cppeditsrc/Field/output_Tecplot.cppeditsrc/pde/IBL/PDEIBLUniField.cppaddtest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_refactoring_Test.txteditsrc/pde/IBL/VarInterpret2D.heditsrc/Field/FieldBaseLine_Instantiate.cppeditsrc/Field/FieldLine_DG_Cell_Instantiate_2D.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cppedittest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne64_a0_unifield.txteditsrc/pde/IBL/PDEIBLUniField.htest/unit/PanelMethod/ProjectionToQauxi_IBL_btest.cppsrc/PanelMethod/ProjectionToQauxi_IBL.hefbcd630b53163132755e40aad29ec4a0ceae64c1540568840000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRestored panel method unit test 2018-10-26 11:47:20 -0400efbcd630b53163132755e40aad29ec4a0ceae64cRestored panel method unit testedittest/unit/PanelMethod/ProjectionToQauxi_IBL_btest.cppeditsrc/PanelMethod/ProjectionToQauxi_IBL.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cpp99ec16b120b13488213218999a740c6f915e8d271540568924000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduTweaked iteration limit to wait until convergence 2018-10-26 11:48:44 -040099ec16b120b13488213218999a740c6f915e8d27Tweaked iteration limit to wait until convergenceedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cppsrc/Field/Element/GalerkinWeightedIntegral_New.htest/unit/pde/IBL/PDEIBLUniField2D_btest.cppsrc/pde/IBL/PDEIBL2D.htest/sandbox/Solve2D_Uncoupled_DGAdvective_IBL_toy.cpptest/unit/pde/IBL/PDEIBL2D_btest.cpptest/sandbox/Solve2D_Uncoupled_DGAdvective_IBL_p0_toy.cppsrc/pde/IBL/PDEIBLUniField.htest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_NACA0004_LamiBL_PTC_btest.cppsrc/pde/IBL/FluidModels.h5851028002a5bdec574a2362c97118e7b9445e161540578641000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactored constructors of IBL PDE and fluid models. Started PDEIBLUniField unit test. Other minor refactoring 2018-10-26 14:30:41 -04005851028002a5bdec574a2362c97118e7b9445e16Refactored constructors of IBL PDE and fluid models. Started PDEIBLUniField unit test. Other minor refactoringedittest/sandbox/Solve2D_Uncoupled_DGAdvective_IBL_toy.cppedittest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_NACA0004_LamiBL_PTC_btest.cppaddtest/unit/pde/IBL/PDEIBLUniField2D_btest.cppedittest/sandbox/Solve2D_Uncoupled_DGAdvective_IBL_p0_toy.cppeditsrc/pde/IBL/PDEIBLUniField.heditsrc/Field/Element/GalerkinWeightedIntegral_New.heditsrc/pde/IBL/FluidModels.hedittest/unit/pde/IBL/PDEIBL2D_btest.cppeditsrc/pde/IBL/PDEIBL2D.hsrc/pde/AnalyticFunction/ScalarFunction2D.cpptest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cppsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_AdvectionDiffusion2D_AUDUSUG.cppsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion2D.hsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_AdvectionDiffusion2D_AUDUSUG.cppsrc/pde/NDConvert/BCNDConvertSpaceTime2D.htest/unit/pde/AnalyticFunction/ScalarFunction2D_btest.cpptest/unit/UnitGrids/XField4D_1Ptope_X1_1Group_btest.cppsrc/pde/AnalyticFunction/ScalarFunction2D.ha65c96e56bffc46d0330665ae5983b7bc57137c51540578974000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.eduAdded 2D+T AD case, in progress, with assorted necessary changes. Still needs BC fix. Also added framework for 4D single pentatope unit grid. Should hopefully also include all necessary unit testing, as mapped from similar 1D cases to cases of interest. 2018-10-26 14:36:14 -0400a65c96e56bffc46d0330665ae5983b7bc57137c5Added 2D+T AD case, in progress, with assorted necessary changes. Still needs BC fix. Also added framework for 4D single pentatope unit grid. Should hopefully also include all necessary unit testing, as mapped from similar 1D cases to cases of interest.edittest/unit/UnitGrids/XField4D_1Ptope_X1_1Group_btest.cppeditsrc/pde/AnalyticFunction/ScalarFunction2D.cppeditsrc/pde/AnalyticFunction/ScalarFunction2D.heditsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_AdvectionDiffusion2D_AUDUSUG.cppaddtest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cppeditsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_AdvectionDiffusion2D_AUDUSUG.cppeditsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion2D.heditsrc/pde/NDConvert/BCNDConvertSpaceTime2D.hedittest/unit/pde/AnalyticFunction/ScalarFunction2D_btest.cppsrc/Adaptation/MOESS/SolverInterface_L2Project.h36861cd5d6c88e6adf6114024c1e61dadba49f581540695272000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix typo 2018-10-27 22:54:32 -040036861cd5d6c88e6adf6114024c1e61dadba49f58Fix typoeditsrc/Adaptation/MOESS/SolverInterface_L2Project.hsrc/Adaptation/MOESS/NodalMetrics.cpptest/unit/Field/Field_NodalView_btest.cpptest/unit/Field/Element/ElementSpacetime_Pentatope_btest.cpptest/unit/UnitGrids/XField_KuhnFreudenthal.cpptest/unit/Adaptation/MOESS/CostModel_FeFloa_btest.cppsrc/Field/XFieldSpacetime_checkGrid_impl.htest/unit/Adaptation/MOESS/CostModel_LogEuclidian_btest.cppsrc/Field/Element/ElementSpacetime.htest/sandbox/Adapt4D_Mesh_Optimizer_toy.cpptest/sandbox/Adapt3D_Mesh_Optimizer_toy.cpptest/unit/IO/Field/ElementSpacetime_Pentatope_pattern.txta1e2ea59d8eb810861fb2e3193262d5a8333b81d1540830634000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edufield element pentatope tests 2018-10-29 12:30:34 -0400a1e2ea59d8eb810861fb2e3193262d5a8333b81dfield element pentatope testseditsrc/Adaptation/MOESS/NodalMetrics.cppeditsrc/Field/Element/ElementSpacetime.haddtest/unit/Field/Element/ElementSpacetime_Pentatope_btest.cppedittest/unit/Field/Field_NodalView_btest.cppaddtest/unit/IO/Field/ElementSpacetime_Pentatope_pattern.txtedittest/sandbox/Adapt4D_Mesh_Optimizer_toy.cppedittest/unit/Adaptation/MOESS/CostModel_FeFloa_btest.cppedittest/unit/UnitGrids/XField_KuhnFreudenthal.cppeditsrc/Field/XFieldSpacetime_checkGrid_impl.hedittest/unit/Adaptation/MOESS/CostModel_LogEuclidian_btest.cppedittest/sandbox/Adapt3D_Mesh_Optimizer_toy.cpptest/unit/Field/Element/ElementXFieldVolume_4D_Tetrahedron_btest.cppsrc/Field/Element/ElementXFieldSpacetime_impl.hsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.cpptest/unit/Adaptation/MOESS/CostModel_LogEuclidian_btest.cppsrc/Field/Element/ElementXFieldSpacetime_Instantiate_4D.cpptest/sandbox/Adapt3D_Mesh_Optimizer_toy.cpptest/sandbox/Adapt4D_Mesh_Optimizer_toy.cpptest/unit/Field/Element/ElementXFieldSpacetime_Pentatope_btest.cpp3a945b072e553a6c953dd722266522c81edb58ec1540837274000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edudebugging costmodel_logeuclidean on topoD4 ping tests 2018-10-29 14:21:14 -04003a945b072e553a6c953dd722266522c81edb58ecdebugging costmodel_logeuclidean on topoD4 ping testseditsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.cppedittest/unit/Adaptation/MOESS/CostModel_LogEuclidian_btest.cppeditsrc/Field/Element/ElementXFieldSpacetime_impl.hedittest/unit/Field/Element/ElementXFieldSpacetime_Pentatope_btest.cppedittest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppeditsrc/Field/Element/ElementXFieldSpacetime_Instantiate_4D.cppedittest/sandbox/Adapt4D_Mesh_Optimizer_toy.cppedittest/unit/Field/Element/ElementXFieldVolume_4D_Tetrahedron_btest.cpptest/unit/UnitGrids/XField_KuhnFreudenthal.cpp841fa3ac96d485b804ce0652b8e6cd85f0ddf36a1540837524000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edubrace alignment 2018-10-29 14:25:24 -0400841fa3ac96d485b804ce0652b8e6cd85f0ddf36abrace alignmentedittest/unit/UnitGrids/XField_KuhnFreudenthal.cpptest/unit/Field/Element/ElementXFieldSpacetime_Pentatope_btest.cpp05d9602f05603613e903cd408d9d95de55ee05621540837605000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduuncomment xfieldspacetime_pentatope tests until actually implemented 2018-10-29 14:26:45 -040005d9602f05603613e903cd408d9d95de55ee0562uncomment xfieldspacetime_pentatope tests until actually implementededittest/unit/Field/Element/ElementXFieldSpacetime_Pentatope_btest.cpptest/unit/Field/Field4D_CG_Pentatope_btest.cppb10e2a70c89908208d325d0c32e58b7b0d757ba81540842383000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduunused defs 2018-10-29 15:46:23 -0400b10e2a70c89908208d325d0c32e58b7b0d757ba8unused defsedittest/unit/Field/Field4D_CG_Pentatope_btest.cpptest/unit/Adaptation/MOESS/CostModel_LogEuclidian_btest.cpptest/unit/Field/Field4D_CG_Pentatope_btest.cpptest/unit/Field/Field_NodalView_btest.cpptest/unit/UnitGrids/XField_KuhnFreudenthal.cpptest/unit/Adaptation/MOESS/CostModel_FeFloa_btest.cpp35a85df6949374dced038fe950f3f80ec858549b1540843765000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduundefined references without avro 2018-10-29 16:09:25 -040035a85df6949374dced038fe950f3f80ec858549bundefined references without avroedittest/unit/Adaptation/MOESS/CostModel_FeFloa_btest.cppedittest/unit/UnitGrids/XField_KuhnFreudenthal.cppedittest/unit/Field/Field4D_CG_Pentatope_btest.cppedittest/unit/Field/Field_NodalView_btest.cppedittest/unit/Adaptation/MOESS/CostModel_LogEuclidian_btest.cpptest/unit/Field/Field_NodalView_btest.cppfc63dd8bf04458360b6ebacb923a46be11b419451540846553000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edusign compare 2018-10-29 16:55:53 -0400fc63dd8bf04458360b6ebacb923a46be11b41945sign compareedittest/unit/Field/Field_NodalView_btest.cppsrc/Field/CMakeLists.txtd69d0e89e3924fde5af4fee063e5d5ac64af4f691540849010000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edumissing file to compile 2018-10-29 17:36:50 -0400d69d0e89e3924fde5af4fee063e5d5ac64af4f69missing file to compileeditsrc/Field/CMakeLists.txttest/unit/UnitGrids/XField_KuhnFreudenthal.cpp291579488fe3f224e288904f5b407018b80325e41540856864000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edulingering comma 2018-10-29 19:47:44 -0400291579488fe3f224e288904f5b407018b80325e4lingering commaedittest/unit/UnitGrids/XField_KuhnFreudenthal.cppsrc/Field/Field_CG_CellConstructor.cpptest/unit/BasisFunction/ElementFrame_btest.cppsrc/BasisFunction/ElementFrame.hsrc/BasisFunction/ElementFrame.cppsrc/Topology/ElementTopology.hsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cppsrc/Field/Field_CG_Topology.cppsrc/BasisFunction/CMakeLists.txt3ab0288e92a559782449b8053ad8de6e7d0ae1e81540857390000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduridge -> frame 2018-10-29 19:56:30 -04003ab0288e92a559782449b8053ad8de6e7d0ae1e8ridge -> frameeditsrc/BasisFunction/CMakeLists.txteditsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cppeditsrc/Field/Field_CG_CellConstructor.cppaddtest/unit/BasisFunction/ElementFrame_btest.cppaddsrc/BasisFunction/ElementFrame.heditsrc/Field/Field_CG_Topology.cppeditsrc/Topology/ElementTopology.haddsrc/BasisFunction/ElementFrame.cppsrc/BasisFunction/BasisFunctionVolume_Projection.cpptest/unit/Meshing/EGTess/XFieldDomain_btest.cppb1906b9e2e962b59ac9dcf8c8f0f145d3e10aacf1540859084000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduundef references 2018-10-29 20:24:44 -0400b1906b9e2e962b59ac9dcf8c8f0f145d3e10aacfundef referencesedittest/unit/Meshing/EGTess/XFieldDomain_btest.cppeditsrc/BasisFunction/BasisFunctionVolume_Projection.cppsrc/BasisFunction/ElementRidge.htest/unit/BasisFunction/ElementRidge_btest.cppsrc/BasisFunction/ElementRidge.cppeb34c34c5e043eaae1142a8ef500151f30881a801540860029000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.educommit deleted files 2018-10-29 20:40:29 -0400eb34c34c5e043eaae1142a8ef500151f30881a80commit deleted filesdeletesrc/BasisFunction/ElementRidge.hdeletetest/unit/BasisFunction/ElementRidge_btest.cppdeletesrc/BasisFunction/ElementRidge.cpptest/sandbox/Adapt4D_Mesh_Optimizer_toy.cpp3e0d6b224f55c66e70082cdfaa2a48a0ef73d8031540860890000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduwrap ifdef SANS_AVRO further ahead 2018-10-29 20:54:50 -04003e0d6b224f55c66e70082cdfaa2a48a0ef73d803wrap ifdef SANS_AVRO further aheadedittest/sandbox/Adapt4D_Mesh_Optimizer_toy.cpptest/unit/CMakeLists.txt572e0a3348ff609a8a2812a2a2198d186a5138671540899022000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduomit spacetime pentatope btest from memcheck because it takes a long time, bump up timeout for it as well 2018-10-30 07:30:22 -0400572e0a3348ff609a8a2812a2a2198d186a513867omit spacetime pentatope btest from memcheck because it takes a long time, bump up timeout for it as welledittest/unit/CMakeLists.txtsrc/BasisFunction/BasisFunctionVolume_Projection.cpp18615b593ed776594892849e8ca2dc27d7b8ad2c1540899245000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduinstantiate matrixsyms4 projection for tets 2018-10-30 07:34:05 -040018615b593ed776594892849e8ca2dc27d7b8ad2cinstantiate matrixsyms4 projection for tetseditsrc/BasisFunction/BasisFunctionVolume_Projection.cppsrc/BasisFunction/BasisFunctionSpacetime_Projection.cppcad559eb743afdeb00b0e304a9c3bf0e5626ac3e1540904103000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edubasis function instantiate 2018-10-30 08:55:03 -0400cad559eb743afdeb00b0e304a9c3bf0e5626ac3ebasis function instantiateeditsrc/BasisFunction/BasisFunctionSpacetime_Projection.cppsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppfd701b114da5a549567b89ec0bc173a11fa888f51540905423000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edumatmul instantiation 2018-10-30 09:17:03 -0400fd701b114da5a549567b89ec0bc173a11fa888f5matmul instantiationeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cpptest/unit/Field/Element/ElementSpacetime_Pentatope_btest.cpp3be20e774c9d3f93a5ef2e64655e639c80d2b3061540907478000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edureduced number of orientations to make elementspacetime_pentatope test go faster 2018-10-30 09:51:18 -04003be20e774c9d3f93a5ef2e64655e639c80d2b306reduced number of orientations to make elementspacetime_pentatope test go fasteredittest/unit/Field/Element/ElementSpacetime_Pentatope_btest.cppCMakeInclude/CompilerFlags.cmake223306e7e341dcb37812c5f4dfb4a51179d1909f1540918475000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduRemove maybe uninitialized wanrings on gnu 8 2018-10-30 12:54:35 -0400223306e7e341dcb37812c5f4dfb4a51179d1909fRemove maybe uninitialized wanrings on gnu 8editCMakeInclude/CompilerFlags.cmakesrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppb5f5460cb2206d8912d4eac6bf3f08d4ec9157361540921443000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edulast instantiation i promise 2018-10-30 13:44:03 -0400b5f5460cb2206d8912d4eac6bf3f08d4ec915736last instantiation i promiseeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cpptest/unit/Adaptation/MOESS/CostModel_LogEuclidian_btest.cpp0d6f57c3e4d385d03ddf9fe3233b0e586061a7011540926555000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edubug in cost model log-euclidean test because of the vertex/step matrix ordering 2018-10-30 15:09:15 -04000d6f57c3e4d385d03ddf9fe3233b0e586061a701bug in cost model log-euclidean test because of the vertex/step matrix orderingedittest/unit/Adaptation/MOESS/CostModel_LogEuclidian_btest.cppsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppa56a785d748a3bfee93c5536a372ee7bf0be43961540933651000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduseriously this has to be the last one 2018-10-30 17:07:31 -0400a56a785d748a3bfee93c5536a372ee7bf0be4396seriously this has to be the last oneeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppa19700f53d792fa198e0e127393ad73426374e4e1540943266000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edulast one! 2018-10-30 19:47:46 -0400a19700f53d792fa198e0e127393ad73426374e4elast one!editsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cpptest/sandbox/Adapt4D_Mesh_Optimizer_toy.cppf91c9e04bfb4b733cee8c7177bb679c7e4f861dc1540950492000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edutrigger commit 2018-10-30 21:48:12 -0400f91c9e04bfb4b733cee8c7177bb679c7e4f861dctrigger commitedittest/sandbox/Adapt4D_Mesh_Optimizer_toy.cpptest/unit/Field/Element/ElementSpacetime_Pentatope_btest.cppfa5d2a37976738857f8601c6a2c60352d384978b1540982744000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduup to p=2 for element space time test because it's really slow 2018-10-31 06:45:44 -0400fa5d2a37976738857f8601c6a2c60352d384978bup to p=2 for element space time test because it's really slowedittest/unit/Field/Element/ElementSpacetime_Pentatope_btest.cppsrc/pde/IBL/IBLMiscClosures.hsrc/pde/IBL/PDEIBL2D.hsrc/pde/IBL/PDEIBL2D_impl.htest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBLUniField_NACA0004_LamiBL_btest.cppsrc/pde/IBL/BCIBL2D.hsrc/pde/IBL/SetTransitionFrontIBL2D_InteriorTraceGroup.hsrc/pde/IBL/IBL_Traits.hsrc/pde/IBL/QauxvInterpret2D.hsrc/pde/IBL/BCIBLUniField.htest/unit/pde/IBL/PDEIBL2D_btest.cppsrc/pde/IBL/PDEIBLUniField.hsrc/pde/IBL/ElementProjectionIBLoutput_L2.hsrc/pde/IBL/VarInterpret2D.h962561285120e22fcef76dff4a6c8d935e30db6a1541178943000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRevamped Qauxv/parameters API. 2018-11-02 13:15:43 -0400962561285120e22fcef76dff4a6c8d935e30db6aRevamped Qauxv/parameters API.editsrc/pde/IBL/PDEIBL2D_impl.haddsrc/pde/IBL/QauxvInterpret2D.hedittest/unit/pde/IBL/PDEIBL2D_btest.cppedittest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBLUniField_NACA0004_LamiBL_btest.cppeditsrc/pde/IBL/SetTransitionFrontIBL2D_InteriorTraceGroup.heditsrc/pde/IBL/BCIBL2D.heditsrc/pde/IBL/PDEIBLUniField.heditsrc/pde/IBL/ElementProjectionIBLoutput_L2.heditsrc/pde/IBL/VarInterpret2D.heditsrc/pde/IBL/IBL_Traits.heditsrc/pde/IBL/BCIBLUniField.heditsrc/pde/IBL/PDEIBL2D.heditsrc/pde/IBL/IBLMiscClosures.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_iter_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_p0_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_p0_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpp2f61314d256d37380589a4fae04cddcc4509529b1541290595000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed typos 2018-11-03 20:16:35 -04002f61314d256d37380589a4fae04cddcc4509529bFixed typosedittest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_p0_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_iter_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_p0_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppsrc/PanelMethod/ProjectionToQauxi_IBL.hsrc/pde/IBL/BCIBLUniField.htest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBLUniField_NACA0004_LamiBL_btest.cppsrc/PanelMethod/FunctionEvalQauxv_IBL.hsrc/pde/IBL/QauxvInterpret2D.hea2db2beb5058502b2a0b70812d091d0fdf362301541291100000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduPropagated more changes in IBL parameter API. Verified coupled IBL UniFIeld forced laminar case. 2018-11-03 20:25:00 -0400ea2db2beb5058502b2a0b70812d091d0fdf36230Propagated more changes in IBL parameter API. Verified coupled IBL UniFIeld forced laminar case.editsrc/PanelMethod/ProjectionToQauxi_IBL.heditsrc/PanelMethod/FunctionEvalQauxv_IBL.heditsrc/pde/IBL/BCIBLUniField.heditsrc/pde/IBL/QauxvInterpret2D.hedittest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBLUniField_NACA0004_LamiBL_btest.cpptest/system/AnalyticSolve/AnalyticSolve2D_DGAdvective_IBL_StagnationFlow_SingleElem_LamiBL_btest.cpptest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBLUniField_NACA0004_LamiBL_btest.cppsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.hc1fcdcd209b7fa7b4fe3fa57bb342dbbf122bf9d1541293189000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed more tests related to IBL parameter API 2018-11-03 20:59:49 -0400c1fcdcd209b7fa7b4fe3fa57bb342dbbf122bf9dFixed more tests related to IBL parameter APIedittest/system/AnalyticSolve/AnalyticSolve2D_DGAdvective_IBL_StagnationFlow_SingleElem_LamiBL_btest.cppedittest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBLUniField_NACA0004_LamiBL_btest.cppeditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.htest/system/AnalyticSolve/AnalyticSolve2D_DGAdvective_IBL_StagnationFlow_SingleElem_LamiBL_btest.cppc8f02c2820070eb12816d7e7bc7927b6535d2f931541294266000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduUpdate test/system/AnalyticSolve/AnalyticSolve2D_DGAdvective_IBL_StagnationFlow_SingleElem_LamiBL_btest.cpp 2018-11-03 21:17:46 -0400c8f02c2820070eb12816d7e7bc7927b6535d2f93Update test/system/AnalyticSolve/AnalyticSolve2D_DGAdvective_IBL_StagnationFlow_SingleElem_LamiBL_btest.cppedittest/system/AnalyticSolve/AnalyticSolve2D_DGAdvective_IBL_StagnationFlow_SingleElem_LamiBL_btest.cppsrc/pde/IBL/PDEIBL2D.hsrc/pde/IBL/PDEIBLUniField.htest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_NACA0004_LamiBL_PTC_btest.cpptest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_NACA0004_LamiBL_btest.cppcd12f7d25f2775a19c4505a2c4a47502e2c690121541294947000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduVerified two system tests with PDEIBL2D using LF flux. 2018-11-03 21:29:07 -0400cd12f7d25f2775a19c4505a2c4a47502e2c69012Verified two system tests with PDEIBL2D using LF flux.editsrc/pde/IBL/PDEIBL2D.hedittest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_NACA0004_LamiBL_PTC_btest.cppeditsrc/pde/IBL/PDEIBLUniField.hedittest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_NACA0004_LamiBL_btest.cpptest/system/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_NACA0004_LamiBL_btest.cppsrc/pde/IBL/PDEIBL2D_impl.h356dc6810f8e48aff0eb5cf967818ae0d80382e11541295178000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed uncoupled IBL HDG case 2018-11-03 21:32:58 -0400356dc6810f8e48aff0eb5cf967818ae0d80382e1Fixed uncoupled IBL HDG caseeditsrc/pde/IBL/PDEIBL2D_impl.hedittest/system/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_NACA0004_LamiBL_btest.cppsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion2D.hsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion2D.cpptest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cpp954f5d6f7f9405bb1cd53af9cefe7839fcfbe15c1541477734000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.edu2D+T is running, working towards validation. 2018-11-05 23:15:34 -0500954f5d6f7f9405bb1cd53af9cefe7839fcfbe15c2D+T is running, working towards validation.editsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion2D.cppedittest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cppeditsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion2D.hsrc/Python/PyDict.hsrc/Python/PyDict.cppsrc/Python/InputException.hsrc/UserInterfaces/capsAIM/sansLIPAIM.cpptest/unit/Python/PyDict_btest.cppf07009a8c85068fcc1d1743b324b4776f041b07f1541507601000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded json parser to PyDict 2018-11-06 07:33:21 -0500f07009a8c85068fcc1d1743b324b4776f041b07fAdded json parser to PyDicteditsrc/UserInterfaces/capsAIM/sansLIPAIM.cppedittest/unit/Python/PyDict_btest.cppeditsrc/Python/PyDict.heditsrc/Python/InputException.heditsrc/Python/PyDict.cppsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion2D.htest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cppsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion2D.cppsrc/pde/AnalyticFunction/ScalarFunction2D.hsrc/pde/AnalyticFunction/ScalarFunction2D.cppfc48b8da3d68d7efd16754ce824424088e5c77c41541625325000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.eduFixed formatting from vera++. Also reformulated 2D+T case for convergence investigation. 2018-11-07 16:15:25 -0500fc48b8da3d68d7efd16754ce824424088e5c77c4Fixed formatting from vera++. Also reformulated 2D+T case for convergence investigation.edittest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cppeditsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion2D.heditsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion2D.cppeditsrc/pde/AnalyticFunction/ScalarFunction2D.heditsrc/pde/AnalyticFunction/ScalarFunction2D.cpptest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cpp46035cad3d3fb6bce1e81bcca95681e8e194e5b41541663578000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.eduswitched from pure adv to AD for hypersonic. 2018-11-08 02:52:58 -050046035cad3d3fb6bce1e81bcca95681e8e194e5b4switched from pure adv to AD for hypersonic.edittest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cppsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion2D.htest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cpp318b4d72e59bf63aca4a53904eaf38be646639861541710981000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.edu2D+T AD ST toy fix; need unit tests for BCAD2D.h 2018-11-08 16:03:01 -0500318b4d72e59bf63aca4a53904eaf38be646639862D+T AD ST toy fix; need unit tests for BCAD2D.heditsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion2D.hedittest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cppsrc/pde/IBL/BCIBL2D.hsrc/pde/IBL/BCIBLUniField.hsrc/pde/IBL/PDEIBL2D.hsrc/pde/IBL/PDEIBLUniField.h96ced65f79774ccc9388aeac794dc5d8da957bba1541726833000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed bugs in PDEIBLUniField 1. forgot 0.5 factor in source term of lag equation. 2. wrong sign in the amp source term equation for imposing initial condition on nt. 3. fixed upwinded flux of full upwinding 2018-11-08 20:27:13 -050096ced65f79774ccc9388aeac794dc5d8da957bbaFixed bugs in PDEIBLUniFieldeditsrc/pde/IBL/PDEIBL2D.heditsrc/pde/IBL/BCIBL2D.heditsrc/pde/IBL/PDEIBLUniField.heditsrc/pde/IBL/BCIBLUniField.htest/unit/Meshing/EGADS/EGObject_btest.cppCMakeInclude/Builds/BuildREFINE.cmakesrc/Meshing/EGTess/EGTessModel_aflr4.cppsrc/Meshing/gmsh/WriteMesh_gmsh.cppsrc/tools/SANSException.cppsrc/pde/FullPotential/BCLinearizedIncompressiblePotential3D.htest/unit/pde/FullPotential/BCLinearizedIncompressiblePotential3D_btest.cpptest/unit/Meshing/refine/refine3D_btest.cppsrc/Meshing/EGTess/EGTessModel.hsrc/UserInterfaces/LIPSolver.htest/unit/Meshing/AFLR/AFLR3_btest.cpptest/unit/Meshing/EGADS/EGTessellation_btest.cppsrc/UserInterfaces/capsAIM/sansLIPAIM.cpptest/unit/Python/Parameters_btest.cppsrc/Meshing/EPIC/WriteMeshMetric_Epic.cppscripts/jenkins/jenkins_env.shsrc/Meshing/EGADS/EGObject.htest/sandbox/Solve3D_CG_NACA_LIP_Drela_toy.cpptest/unit/Meshing/EGTess/AFLR4_btest.cppsrc/Python/PyDict.cpptest/unit/Python/PyDict_btest.cpptest/unit/IO/NonLinearSolver/residual.dattest/unit/Meshing/EGADS/EGTessModel_btest.cppsrc/Meshing/EGTess/EGTessModel.cpptest/unit/Meshing/EGTess/EGTessModel_btest.cppsrc/Meshing/ugrid/XFieldVolume_ugrid.cppCMakeInclude/CompilerFlags.cmaketest/unit/Meshing/EGTess/CMakeLists.txtsrc/Meshing/libMeshb/libMeshb_Interface.hsrc/tools/BackTraceException.cpptest/sandbox/Solve3D_CG_NACA_FP_Drela_toy.cpptest/unit/tools/output_std_vector_btest.cppsrc/Python/Parameter.cppsrc/tools/SANSException.hsrc/Meshing/EGTess/EGTriangle.cppsrc/Meshing/EGTess/AFLR4.hsrc/pde/FullPotential/BCLinearizedIncompressiblePotential3D.cppCMakeInclude/Finds/FindAFLR.cmakesrc/UserInterfaces/LIPSolver.cppCMakeInclude/Checks/aflr_test.cxxtest/unit/Meshing/EGADS/EGTessEdge_btest.cppsrc/tools/system_call.cpptest/unit/Meshing/EGTess/EGTessEdge_btest.cpptest/unit/Meshing/EGADS/CMakeLists.txtsrc/Meshing/EGADS/EGObject.cpptest/unit/IO/NonLinearSolver/linesearch_residuals.datsrc/Meshing/EPIC/XField_PX.cppsrc/tools/output_std_vector.hsrc/Meshing/EGTess/AFLR4.cppCMakeInclude/Checks/CheckAFLR.cmakesrc/Python/Parameter.htest/unit/Meshing/TetGen/CMakeLists.txtsrc/Meshing/EGTess/CMakeLists.txttest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cpptest/unit/Meshing/EGTess/EGTessellation_btest.cppsrc/UserInterfaces/capsAIM/intersectWake.cpptest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppe570c3724997970584c8bcff74dc02bf298d084f1541875585000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduLots of refactoring of AFLR4 and sansLIPAIM. All seems to be functioning. 2018-11-10 13:46:25 -0500e570c3724997970584c8bcff74dc02bf298d084fLots of refactoring of AFLR4 and sansLIPAIM. All seems to be functioning.edittest/unit/IO/NonLinearSolver/linesearch_residuals.datdeletetest/unit/Meshing/EGADS/EGTessModel_btest.cppdeletetest/unit/Meshing/EGADS/EGTessellation_btest.cppeditsrc/tools/BackTraceException.cppeditCMakeInclude/Builds/BuildREFINE.cmakeeditsrc/Meshing/ugrid/XFieldVolume_ugrid.cppeditsrc/Meshing/EGTess/EGTessModel_aflr4.cppedittest/unit/Python/Parameters_btest.cppdeletetest/unit/Meshing/EGADS/EGTessEdge_btest.cppeditsrc/Meshing/EGTess/EGTessModel.heditsrc/Meshing/EPIC/WriteMeshMetric_Epic.cppeditsrc/Meshing/libMeshb/libMeshb_Interface.hedittest/unit/Meshing/EGTess/CMakeLists.txteditsrc/tools/SANSException.hedittest/unit/Python/PyDict_btest.cppeditsrc/UserInterfaces/LIPSolver.heditsrc/tools/system_call.cppeditsrc/Meshing/EGTess/EGTriangle.cppeditsrc/UserInterfaces/capsAIM/intersectWake.cppedittest/unit/Meshing/TetGen/CMakeLists.txtedittest/sandbox/Solve3D_CG_NACA_LIP_Drela_toy.cppedittest/unit/Meshing/AFLR/AFLR3_btest.cppaddsrc/Meshing/EGTess/AFLR4.hedittest/unit/tools/output_std_vector_btest.cppeditsrc/Meshing/gmsh/WriteMesh_gmsh.cppeditsrc/Meshing/EGADS/EGObject.cppeditsrc/UserInterfaces/LIPSolver.cppeditCMakeInclude/CompilerFlags.cmakeeditsrc/Python/Parameter.cppeditscripts/jenkins/jenkins_env.shaddtest/unit/Meshing/EGTess/AFLR4_btest.cppeditsrc/Meshing/EGTess/EGTessModel.cppedittest/unit/Meshing/EGADS/CMakeLists.txteditsrc/Python/Parameter.haddtest/unit/Meshing/EGTess/EGTessEdge_btest.cppaddtest/unit/Meshing/EGTess/EGTessModel_btest.cppedittest/unit/IO/NonLinearSolver/residual.dateditsrc/Python/PyDict.cppedittest/sandbox/Solve3D_CG_NACA_FP_Drela_toy.cppeditsrc/pde/FullPotential/BCLinearizedIncompressiblePotential3D.heditsrc/pde/FullPotential/BCLinearizedIncompressiblePotential3D.cppedittest/unit/Meshing/refine/refine3D_btest.cppeditsrc/UserInterfaces/capsAIM/sansLIPAIM.cppeditsrc/tools/output_std_vector.hedittest/unit/Meshing/EGADS/EGObject_btest.cppeditCMakeInclude/Finds/FindAFLR.cmakeeditCMakeInclude/Checks/aflr_test.cxxeditsrc/Meshing/EPIC/XField_PX.cppedittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppeditsrc/Meshing/EGTess/CMakeLists.txtaddtest/unit/Meshing/EGTess/EGTessellation_btest.cppeditsrc/tools/SANSException.cppeditCMakeInclude/Checks/CheckAFLR.cmakeedittest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppaddsrc/Meshing/EGTess/AFLR4.cppeditsrc/Meshing/EGADS/EGObject.hedittest/unit/pde/FullPotential/BCLinearizedIncompressiblePotential3D_btest.cppsrc/UserInterfaces/capsAIM/intersectWake.cpp5b8cf3090c4f8cb9603fd2d967c99306649ff6391541876504000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMinor fix 2018-11-10 14:01:44 -05005b8cf3090c4f8cb9603fd2d967c99306649ff639Minor fixeditsrc/UserInterfaces/capsAIM/intersectWake.cppCMakeInclude/Finds/FindAFLR.cmake6aeb0f1f784ea7933e2278caf13653a94ff791341541877404000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduTweak to how AFLR is found 2018-11-10 14:16:44 -05006aeb0f1f784ea7933e2278caf13653a94ff79134Tweak to how AFLR is foundeditCMakeInclude/Finds/FindAFLR.cmakesrc/UserInterfaces/PythonUI/PySANS_LIP.cpp9af22b9af1f0180ec75690487acc3236f59b24f01541884703000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed compile error 2018-11-10 16:18:23 -05009af22b9af1f0180ec75690487acc3236f59b24f0Fixed compile erroreditsrc/UserInterfaces/PythonUI/PySANS_LIP.cppscripts/jenkins/jenkins_env.shCMakeInclude/Dependencies.cmake4899334c15b3c84cfb2a0b08887df1a797599ab71541888802000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdate minimum boost version to 1.50 due to bug in property_tree json reader. 2018-11-10 17:26:42 -05004899334c15b3c84cfb2a0b08887df1a797599ab7Update minimum boost version to 1.50 due to bug in property_tree json reader.editCMakeInclude/Dependencies.cmakeeditscripts/jenkins/jenkins_env.shtest/unit/Meshing/EGTess/AFLR4_btest.cpptest/unit/Meshing/EGTess/EGTessModel_btest.cpp38e54796c19f9db07e363fc6fdcdd5fe48ad506a1541897291000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMerged AFLR4 test into EGTessModel 2018-11-10 19:48:11 -050038e54796c19f9db07e363fc6fdcdd5fe48ad506aMerged AFLR4 test into EGTessModeldeletetest/unit/Meshing/EGTess/AFLR4_btest.cppedittest/unit/Meshing/EGTess/EGTessModel_btest.cppsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion2D.hfa11b06e327f85749c4ca992cadea9bcba3257d81541978177000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.eduFixed flux feedthrough for 2D+T AD. 2018-11-11 18:16:17 -0500fa11b06e327f85749c4ca992cadea9bcba3257d8Fixed flux feedthrough for 2D+T AD.editsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion2D.htest/sandbox/Adapt3D_L2Project_MOESS_toy.cppsrc/UserInterfaces/capsAIM/sansLIPAIM.cpp3812519487936a5bcc7e4e36790da3a301fc5f9e1541997673000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMore extensive try with sansLIPAIM 2018-11-11 23:41:13 -05003812519487936a5bcc7e4e36790da3a301fc5f9eMore extensive try with sansLIPAIMedittest/sandbox/Adapt3D_L2Project_MOESS_toy.cppeditsrc/UserInterfaces/capsAIM/sansLIPAIM.cppsrc/UserInterfaces/capsAIM/sansLIPAIM.cppsrc/UserInterfaces/LIPSolver.cppca410500af3a21a0b51acc57102b5180a7da394f1542039280000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMost sansLIP updates 2018-11-12 11:14:40 -0500ca410500af3a21a0b51acc57102b5180a7da394fMost sansLIP updateseditsrc/UserInterfaces/capsAIM/sansLIPAIM.cppeditsrc/UserInterfaces/LIPSolver.cppsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_backsolve.hsrc/Meshing/AFLR/AFLR3.cppsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_factorize.hsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver.hsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_CRS_MatrixD.cppsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_impl.hsrc/UserInterfaces/LIPSolver.cppsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_CRS_double.cppf7ad469db71e25931a95b61c5eb47714b46587fb1542045524000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix MKL_PARDISO for transpose solves. Bug fix for AFLR3 2018-11-12 12:58:44 -0500f7ad469db71e25931a95b61c5eb47714b46587fbFix MKL_PARDISO for transpose solves. Bug fix for AFLR3editsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_backsolve.heditsrc/Meshing/AFLR/AFLR3.cppeditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_CRS_MatrixD.cppeditsrc/UserInterfaces/LIPSolver.cppeditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_CRS_double.cppeditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_factorize.heditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver.heditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_impl.hCMakeInclude/Finds/FindMKL.cmakecd45f09e4278d52817762bcc8e4ee95331f66fe81542053699000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUse static MKL libraries due to python issues 2018-11-12 15:14:59 -0500cd45f09e4278d52817762bcc8e4ee95331f66fe8Use static MKL libraries due to python issueseditCMakeInclude/Finds/FindMKL.cmakeCMakeInclude/Finds/FindMKL.cmake5296add3174f262c60555c86ccc1704b2eaa54ca1542053903000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduDon't statically link in the ld library 2018-11-12 15:18:23 -05005296add3174f262c60555c86ccc1704b2eaa54caDon't statically link in the ld libraryeditCMakeInclude/Finds/FindMKL.cmaketest/unit/Discretization/HDG/CMakeLists.txt80a1a669a4d1e399370075c2d2a6cb89767ba8ee1542054924000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduIncreased timout time for HDG test 2018-11-12 15:35:24 -050080a1a669a4d1e399370075c2d2a6cb89767ba8eeIncreased timout time for HDG testedittest/unit/Discretization/HDG/CMakeLists.txttest/unit/Discretization/HDG/CMakeLists.txtbfc7e99660957219fd12d9dcccdd507695af146f1542075308000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduRealzed timing on another test 2018-11-12 21:15:08 -0500bfc7e99660957219fd12d9dcccdd507695af146fRealzed timing on another testedittest/unit/Discretization/HDG/CMakeLists.txtsrc/Field/Element/GalerkinWeightedIntegral_New.hsrc/pde/IBL/PDEIBLUniField.h43723df71e5a2812070bf0d72503e767e612331c1542212837000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactored UniField IBL and ran it for forced and free transition problems 2018-11-14 11:27:17 -050043723df71e5a2812070bf0d72503e767e612331cRefactored UniField IBL and ran it for forced and free transition problemseditsrc/pde/IBL/PDEIBLUniField.heditsrc/Field/Element/GalerkinWeightedIntegral_New.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpp2fab23a06df0f661bf373cf77d24a9620f7e011f1542215156000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduPlayed captured transition (forced and free) 2018-11-14 12:05:56 -05002fab23a06df0f661bf373cf77d24a9620f7e011fPlayed captured transition (forced and free)edittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne1024_a0_unifield.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne360_a0_unifield.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne96_a0_unifield.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne256_a0_unifield.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne800_a0_unifield.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne192_a0_unifield.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne2048_a0_unifield.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne512_a0_unifield.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne640_a0_unifield.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne128_a0_unifield.txt724b4807b0300822cc812ce15480017dd95b24841542215212000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduUpdated initial solution guesses for reformulated captured transition IBL 2018-11-14 12:06:52 -0500724b4807b0300822cc812ce15480017dd95b2484Updated initial solution guesses for reformulated captured transition IBLedittest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne128_a0_unifield.txtedittest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne96_a0_unifield.txtedittest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne512_a0_unifield.txtedittest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne1024_a0_unifield.txtedittest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne2048_a0_unifield.txtedittest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne256_a0_unifield.txtedittest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne640_a0_unifield.txtedittest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne192_a0_unifield.txtedittest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne800_a0_unifield.txtedittest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne360_a0_unifield.txttest/system/IO/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_naca0004_ne64_p1_airfoil_Test_invCFL0p1.txttest/system/IO/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_naca0004_ne64_p1_airfoil_Test.txtsrc/pde/IBL/PDEIBL2D.hsrc/pde/IBL/PDEIBL2D_impl.htest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_NACA0004_LamiBL_btest.cpptest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_NACA0004_LamiBL_PTC_btest.cpptest/system/IO/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_naca0004_ne64_p1_airfoil_Test_HDGcontinuous.txttest/system/IO/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_naca0004_ne64_p1_airfoil_Test_continuous.txttest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBLUniField_NACA0004_LamiBL_btest.cpptest/system/IO/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_naca0004_ne64_p1_airfoil_Test_LFflux.txttest/system/IO/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_naca0004_ne64_p1_airfoil_Test_invCFL0p001.txtsrc/pde/IBL/PDEIBLUniField.htest/system/IO/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_naca0004_ne64_p1_airfoil_Test_DGvsHDG.txttest/system/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_NACA0004_LamiBL_btest.cpptest/system/IO/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_naca0004_ne64_p1_airfoil_Test_FullUpwind.txt008dab1f9b6b6fd9e241bd085a5bd8e627f793651542227604000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduUnified system test on the case of uncoupled IBL laminar BL on airfoil 2018-11-14 15:33:24 -0500008dab1f9b6b6fd9e241bd085a5bd8e627f79365Unified system test on the case of uncoupled IBL laminar BL on airfoiledittest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_NACA0004_LamiBL_btest.cppaddtest/system/IO/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_naca0004_ne64_p1_airfoil_Test_FullUpwind.txtdeletetest/system/IO/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_naca0004_ne64_p1_airfoil_Test_invCFL0p001.txteditsrc/pde/IBL/PDEIBL2D.heditsrc/pde/IBL/PDEIBL2D_impl.hedittest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_NACA0004_LamiBL_PTC_btest.cppdeletetest/system/IO/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_naca0004_ne64_p1_airfoil_Test_DGvsHDG.txtedittest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBLUniField_NACA0004_LamiBL_btest.cppdeletetest/system/IO/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_naca0004_ne64_p1_airfoil_Test.txtaddtest/system/IO/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_naca0004_ne64_p1_airfoil_Test_LFflux.txtdeletetest/system/IO/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_naca0004_ne64_p1_airfoil_Test_HDGcontinuous.txteditsrc/pde/IBL/PDEIBLUniField.haddtest/system/IO/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_naca0004_ne64_p1_airfoil_Test_continuous.txtedittest/system/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_NACA0004_LamiBL_btest.cppdeletetest/system/IO/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_naca0004_ne64_p1_airfoil_Test_invCFL0p1.txttest/system/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_NACA0004_LamiBL_btest.cpptest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBLUniField_NACA0004_LamiBL_btest.cppsrc/pde/IBL/PDEIBL2D.hsrc/pde/IBL/PDEIBLUniField.htest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_NACA0004_LamiBL_btest.cpptest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_NACA0004_LamiBL_PTC_btest.cppbe445d3bfd17e3ee507df53e714cfe86848694421542248984000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactored IBL numerical fluxes 2018-11-14 21:29:44 -0500be445d3bfd17e3ee507df53e714cfe8684869442Refactored IBL numerical fluxesedittest/system/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_NACA0004_LamiBL_btest.cppeditsrc/pde/IBL/PDEIBL2D.hedittest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_NACA0004_LamiBL_btest.cppedittest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBLUniField_NACA0004_LamiBL_btest.cppeditsrc/pde/IBL/PDEIBLUniField.hedittest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_NACA0004_LamiBL_PTC_btest.cpptest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_refactoring_Test.txttest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DGAdv_IBLUniField_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test_FullUpwind.txtsrc/pde/IBL/PDEIBL2D.htest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test.txttest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DGAdv_IBLUniField_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test_LFflux.txttest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_HDGAdv_IBL_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test_continuous.txttest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DGAdv_IBL_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test_FullUpwind.txttest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test.txtsrc/pde/IBL/PDEIBLUniField.htest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DGAdv_IBL_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test_LFflux.txttest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBL_turbulentWakeibl3eqm_naca0004_ne64_p1_Test.txttest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeIBL3eqmClosure_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_LamiBL_TurbWake_btest.cpp3856be0f6e1c64ba7d30296d6317870bbb51b28c1542251895000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduUpdated pyrite files for coupled coupled IBL cases with laminarBL+turbulentWake 2018-11-14 22:18:15 -05003856be0f6e1c64ba7d30296d6317870bbb51b28cUpdated pyrite files for coupled coupled IBL cases with laminarBL+turbulentWakeaddtest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DGAdv_IBL_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test_FullUpwind.txtaddtest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_HDGAdv_IBL_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test_continuous.txtdeletetest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test.txtaddtest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DGAdv_IBLUniField_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test_LFflux.txteditsrc/pde/IBL/PDEIBLUniField.haddtest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DGAdv_IBL_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test_LFflux.txtedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cppedittest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBL_turbulentWakeibl3eqm_naca0004_ne64_p1_Test.txtedittest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_LamiBL_TurbWake_btest.cppdeletetest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_refactoring_Test.txtedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeIBL3eqmClosure_btest.cppdeletetest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test.txtedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cppaddtest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DGAdv_IBLUniField_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test_FullUpwind.txteditsrc/pde/IBL/PDEIBL2D.htest/sandbox/Solve3D_DGBR2_AD_ST_toy.cpptest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cppdcfc7eeedb058f448a4946eddf0e9462015b7ffa1542257368000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.eduMoved 2D+T convergence to Solve3D, made Adapt3D version adapt. 2018-11-14 23:49:28 -0500dcfc7eeedb058f448a4946eddf0e9462015b7ffaMoved 2D+T convergence to Solve3D, made Adapt3D version adapt.edittest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cppaddtest/sandbox/Solve3D_DGBR2_AD_ST_toy.cpptest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cpp19bf402ac407493c686c0af0c26eb14950f01b541542258934000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.eduTypo fix. 2018-11-15 00:15:34 -050019bf402ac407493c686c0af0c26eb14950f01b54Typo fix.edittest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_CapturedTransition_btest.cpptest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_forcedTransition0p8244925_naca0004_ne64_p1_Test_CapturedTransition_FullUpwind.txttest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_forcedTransition0p8244925_naca0004_ne64_p1_Test_CapturedTransition_LFflux.txtsrc/pde/IBL/ElementProjectionIBLoutput_L2.htest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBL_turbulentWakeibl3eqm_naca0004_ne64_p1_Test.txttest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeIBL3eqmClosure_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cppbe98c2f1a424a5c34d495416a2f9f3b048f81d811542300488000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRan and added pyrite files for captured forced transition without using cut-cell machinery 2018-11-15 11:48:08 -0500be98c2f1a424a5c34d495416a2f9f3b048f81d81Ran and added pyrite files for captured forced transition without using cut-cell machineryedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeIBL3eqmClosure_btest.cppaddtest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_forcedTransition0p8244925_naca0004_ne64_p1_Test_CapturedTransition_LFflux.txtaddtest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_CapturedTransition_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cppeditsrc/pde/IBL/ElementProjectionIBLoutput_L2.hedittest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBL_turbulentWakeibl3eqm_naca0004_ne64_p1_Test.txtedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cppaddtest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_forcedTransition0p8244925_naca0004_ne64_p1_Test_CapturedTransition_FullUpwind.txtsrc/Adaptation/MOESS/NodalMetrics.cppsrc/Adaptation/TargetMetric.hsrc/Adaptation/TargetMetric.cppsrc/Adaptation/MeshAdapter.cppsrc/Meshing/avro/MesherInterface_avro.cpptest/sandbox/Adapt4D_Mesh_Optimizer_toy.cpptest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppsrc/Meshing/avro/MesherInterface_avro.hbcf7877c2dcdc515f61783a905e7181af5f172521542301240000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edupush to hypersonic 2018-11-15 12:00:40 -0500bcf7877c2dcdc515f61783a905e7181af5f17252push to hypersonicedittest/sandbox/Adapt4D_Mesh_Optimizer_toy.cppeditsrc/Adaptation/MOESS/NodalMetrics.cppeditsrc/Adaptation/TargetMetric.heditsrc/Meshing/avro/MesherInterface_avro.cppeditsrc/Meshing/avro/MesherInterface_avro.heditsrc/Adaptation/TargetMetric.cppeditsrc/Adaptation/MeshAdapter.cppedittest/sandbox/Adapt3D_Mesh_Optimizer_toy.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppffe8936431a043f33f75cdd209cdd4b74565a5761542312431000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduVerified reasonable agreement between natural transition solution of UniField IBL using cut-cell against that using plain DG without cut-cell 2018-11-15 15:07:11 -0500ffe8936431a043f33f75cdd209cdd4b74565a576Verified reasonable agreement between natural transition solution of UniField IBL using cut-cell against that using plain DG without cut-celledittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/sandbox/Solve3D_DGBR2_AD_ST_toy.cpptest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cpp7d4ec6c8e8fc82518aca97287529fedcc7fa5d3b1542326555000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.eduAdded recent-5 to Adapt3D 2D+T AD 2018-11-15 19:02:35 -05007d4ec6c8e8fc82518aca97287529fedcc7fa5d3bAdded recent-5 to Adapt3D 2D+T ADedittest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cppedittest/sandbox/Solve3D_DGBR2_AD_ST_toy.cppsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_MatrixBlock_4x4_Instantiate.cpp56a0f5ffd15c0b7c18fa85ec9301aca3f6aa00371542336299000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded MKL instantiation 2018-11-15 21:44:59 -050056a0f5ffd15c0b7c18fa85ec9301aca3f6aa0037Added MKL instantiationeditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_MatrixBlock_4x4_Instantiate.cppCMakeInclude/Finds/FindMKL.cmakesrc/UserInterfaces/capsAIM/sansLIPAIM.cppsrc/UserInterfaces/capsAIM/CMakeLists.txtb78aa3fda32a0d9566ee487d160013edce7977311542475632000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduSeparate list of MKL static libraries 2018-11-17 12:27:12 -0500b78aa3fda32a0d9566ee487d160013edce797731Separate list of MKL static librarieseditsrc/UserInterfaces/capsAIM/sansLIPAIM.cppeditCMakeInclude/Finds/FindMKL.cmakeeditsrc/UserInterfaces/capsAIM/CMakeLists.txtPreLoad.cmakeCMakeInclude/Finds/FindMKL.cmakesrc/UserInterfaces/capsAIM/CMakeLists.txta1036d4261be708b68a96b91a6424aa74125d1941542479259000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAlways link in MKL statically with sansLIPAIM 2018-11-17 13:27:39 -0500a1036d4261be708b68a96b91a6424aa74125d194Always link in MKL statically with sansLIPAIMeditPreLoad.cmakeeditsrc/UserInterfaces/capsAIM/CMakeLists.txteditCMakeInclude/Finds/FindMKL.cmakesrc/UserInterfaces/capsAIM/sansLIPAIM.cpp13ff56d763c0fd8afc30fcd0181206ff46b509ba1542486298000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMoved error message for sansLIP 2018-11-17 15:24:58 -050013ff56d763c0fd8afc30fcd0181206ff46b509baMoved error message for sansLIPeditsrc/UserInterfaces/capsAIM/sansLIPAIM.cpptest/sandbox/Solve1D_CG_AD_RK_toy.cpptest/sandbox/Solve2D_CGStabilized_Triangle_RANSSA_Joukowski_toy.cpptest/sandbox/Solve2D_DGBR2_Euler_ForwardStep_AV_ST_toy.cpptest/system/LocalSolve/EdgeLocalSolve3D_Dual_Galerkin_Stabilized_AD_btest.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_Euler_CubicSource_toy.cpptest/unit/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_Triangle_Euler_btest.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cpptest/sandbox/Solve1D_DGBR2_Line_Euler_ArtNozzle_AV_ST_toy.cpptest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_Joukowski_toy.cpptest/sandbox/Solve2D_CG_Triangle_Poisson_toy.cpptest/sandbox/Solve3D_CG_xNonLinPoisson_toy.cpptest/sandbox/Adapt1D_DGBR2_Line_Euler_SSMENozzle_toy.cpptest/sandbox/Solve1D_DGBR2_Line_Euler_ArtNozzle_AV_Steady_toy.cpptest/sandbox/Adjoint1D_DGAdvective_AD_ST_toy.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AR_btest.cpptest/sandbox/Adapt3D_CG_AD_L2_MOESS_toy.cpptest/sandbox/Solve2D_CGStabilized_Triangle_Euler_GaussianBump_toy.cpptest/sandbox/Solve1D_DGBR2_Line_Euler_Sod_AV_ST_toy.cpptest/sandbox/Solve1D_DGBR2_Line_Euler_Nozzle_ArtificialViscosity_toy.cpptest/sandbox/Adapt2D_DGAdvective_Euler_CubicSource_toy.cpptest/sandbox/Adapt3D_CG_AD_L2_MultiScale_toy.cpptest/sandbox/Adapt3D_L2Project_MOESS_toy.cpptest/system/LocalSolve/EdgeLocalSolve2D_Primal_Galerkin_Stabilized_Triangle_AD_btest.cpptest/sandbox/Adapt3D_DG_AD_L2_MOESS_toy.cpptest/system/LocalSolve/EdgeLocalSolve1D_Dual_Galerkin_Stabilized_Line_AD_btest.cpptest/sandbox/Solve2D_CG_Triangle_LIP_CubicSource_toy.cppsrc/Adaptation/MOESS/SolverInterface_L2Project.htest/sandbox/Solve1D_DGBR2_Line_Euler_ShuOsher_AV_ST_toy.cpptest/unit/Discretization/Galerkin/FunctionalCell_Galerkin_btest.cpptest/system/LocalSolve/ElementLocalSolve3D_DGAdvective_Tet_AD_btest.cpptest/sandbox/Solve2D_DGAdvective_Triangle_Euler_GaussianBump_toy.cppsrc/Discretization/Galerkin/FunctionalCell_Galerkin.htest/system/LocalSolve/ElementDualLocalSolve3D_Galerkin_Stabilized_Triangle_AD_btest.cpptest/sandbox/Solve2D_CG_NACA_IPTF_linearsolve_toy.cppsrc/Adaptation/MOESS/SolverInterface_DGAdvective.htest/sandbox/Solve1D_DGBR2_Line_Euler_Lax_AV_ST_toy.cpptest/system/Asymptotic/Adjoint2D_DGAdvective_Triangle_AD_btest.cppsrc/Adaptation/MOESS/SolverInterface_Galerkin.htest/sandbox/Solve2D_DGBR2_Triangle_Poisson_toy.cpptest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cpptest/unit/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_Triangle_AD_btest.cpptest/sandbox/Solve3D_DGAdvective_Euler_Suboff_toy.cpptest/sandbox/Solve3D_CG_xtNonLinPoisson_RK_toy.cpptest/sandbox/Solve2D_DGAdvective_AD_RK_toy.cpptest/sandbox/Adjoint1D_DGAdvective_BuckleyLeverett_ST_toy.cpptest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cpp3258448aa8fa0874630ac8edfce5380e237a46481542598875000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduBuilding mpi all_reduce into FunctionalCell_Galerkin 2018-11-18 22:41:15 -05003258448aa8fa0874630ac8edfce5380e237a4648Building mpi all_reduce into FunctionalCell_Galerkinedittest/sandbox/Solve1D_DGBR2_Line_Euler_Nozzle_ArtificialViscosity_toy.cppedittest/sandbox/Solve3D_CG_xNonLinPoisson_toy.cppedittest/sandbox/Solve1D_CG_AD_RK_toy.cppedittest/sandbox/Solve1D_DGBR2_Line_Euler_ArtNozzle_AV_ST_toy.cppedittest/sandbox/Solve1D_DGBR2_Line_Euler_Lax_AV_ST_toy.cppedittest/sandbox/Solve1D_DGBR2_Line_Euler_Sod_AV_ST_toy.cppedittest/sandbox/Solve1D_DGBR2_Line_Euler_ShuOsher_AV_ST_toy.cppedittest/sandbox/Adapt3D_DG_AD_L2_MOESS_toy.cppedittest/sandbox/Adjoint1D_DGAdvective_BuckleyLeverett_ST_toy.cppedittest/sandbox/Solve2D_CGStabilized_Triangle_RANSSA_Joukowski_toy.cppedittest/sandbox/Solve2D_DGBR2_Triangle_Poisson_toy.cppedittest/sandbox/Adapt2D_DGAdvective_Euler_CubicSource_toy.cppedittest/sandbox/Solve2D_CG_Triangle_LIP_CubicSource_toy.cppedittest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cppedittest/system/LocalSolve/ElementLocalSolve3D_DGAdvective_Tet_AD_btest.cppedittest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppedittest/unit/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_Triangle_Euler_btest.cppedittest/sandbox/Solve2D_DGBR2_Euler_ForwardStep_AV_ST_toy.cppedittest/sandbox/Adapt1D_DGBR2_Line_Euler_SSMENozzle_toy.cppedittest/unit/Discretization/Galerkin/FunctionalCell_Galerkin_btest.cppedittest/sandbox/Solve2D_CG_NACA_IPTF_linearsolve_toy.cppedittest/sandbox/Solve2D_CGStabilized_Triangle_NavierStokes_Joukowski_toy.cppedittest/sandbox/Solve2D_DGAdvective_AD_RK_toy.cppedittest/sandbox/Adapt3D_L2Project_MOESS_toy.cppedittest/system/LocalSolve/EdgeLocalSolve2D_Primal_Galerkin_Stabilized_Triangle_AD_btest.cppedittest/unit/Discretization/Galerkin/AlgebraicEquationSet_Local_Galerkin_Stabilized_Triangle_AD_btest.cppedittest/system/Asymptotic/Adjoint2D_DGAdvective_Triangle_AD_btest.cppedittest/sandbox/Solve3D_DGAdvective_Euler_Suboff_toy.cppeditsrc/Adaptation/MOESS/SolverInterface_L2Project.hedittest/sandbox/Solve1D_DGBR2_Line_Euler_ArtNozzle_AV_Steady_toy.cppeditsrc/Adaptation/MOESS/SolverInterface_Galerkin.hedittest/system/LocalSolve/EdgeLocalSolve3D_Dual_Galerkin_Stabilized_AD_btest.cppedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cppeditsrc/Adaptation/MOESS/SolverInterface_DGAdvective.heditsrc/Discretization/Galerkin/FunctionalCell_Galerkin.hedittest/sandbox/Solve2D_CG_Triangle_Poisson_toy.cppedittest/sandbox/Adapt3D_CG_AD_L2_MOESS_toy.cppedittest/system/LocalSolve/ElementDualLocalSolve3D_Galerkin_Stabilized_Triangle_AD_btest.cppedittest/sandbox/Adjoint1D_DGAdvective_AD_ST_toy.cppedittest/sandbox/Solve2D_DGAdvective_Triangle_Euler_GaussianBump_toy.cppedittest/system/LocalSolve/EdgeLocalSolve1D_Dual_Galerkin_Stabilized_Line_AD_btest.cppedittest/sandbox/Solve2D_CGStabilized_Triangle_Euler_GaussianBump_toy.cppedittest/sandbox/Solve3D_CG_xtNonLinPoisson_RK_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_Euler_CubicSource_toy.cppedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AR_btest.cppedittest/sandbox/Adapt3D_CG_AD_L2_MultiScale_toy.cpptest/sandbox/Optimize_Blade_HSM2D_toy.cpptest/sandbox/Solve2D_CGStabilized_Triangle_Euler_GaussianBump_toy.cpp01fa554c1f8a979515b1e0664efef84614902d8e1542601795000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded missing includes 2018-11-18 23:29:55 -050001fa554c1f8a979515b1e0664efef84614902d8eAdded missing includesedittest/sandbox/Solve2D_CGStabilized_Triangle_Euler_GaussianBump_toy.cppedittest/sandbox/Optimize_Blade_HSM2D_toy.cpptest/system/CodeConsistency/Solve2D_XfoilLikePanelMethod_btest.cppe9af8057ee4b835001ea5a4efb80cb575be215fe1542734734000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduMinor edits 2018-11-20 12:25:34 -0500e9af8057ee4b835001ea5a4efb80cb575be215feMinor editsedittest/system/CodeConsistency/Solve2D_XfoilLikePanelMethod_btest.cppsrc/pde/IBL/PDEIBL2D_impl.hsrc/pde/IBL/PDEIBLUniField.hsrc/pde/IBL/PDEIBL2D.h3e30c115b24a6d1d853d848a52d0ffd455c922b11542813322000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduChanged default numerical flux 2018-11-21 10:15:22 -05003e30c115b24a6d1d853d848a52d0ffd455c922b1Changed default numerical fluxeditsrc/pde/IBL/PDEIBL2D_impl.heditsrc/pde/IBL/PDEIBL2D.heditsrc/pde/IBL/PDEIBLUniField.hsrc/pde/IBL/PDEIBL2D.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_forcedTransition0p8074822_naca0004_ne64_p1_Test_FittedTransition_FullUpwind.txttest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_forcedTransition0p8074822_naca0004_ne64_p1_Test_FittedTransition_LFflux.txtbee283002ff8a61806269e2ff96bc693e08c6d3a1542814518000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded pyrite files for fitted transition of forced cases 2018-11-21 10:35:18 -0500bee283002ff8a61806269e2ff96bc693e08c6d3aAdded pyrite files for fitted transition of forced casesedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppeditsrc/pde/IBL/PDEIBL2D.haddtest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_forcedTransition0p8074822_naca0004_ne64_p1_Test_FittedTransition_LFflux.txtaddtest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_forcedTransition0p8074822_naca0004_ne64_p1_Test_FittedTransition_FullUpwind.txttest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_iter_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpp0da0143f870762740461099f2a116db9111e602e1542815702000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRemoved redundant cases 2018-11-21 10:55:02 -05000da0143f870762740461099f2a116db9111e602eRemoved redundant casesdeletetest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppdeletetest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_iter_TurbWake_btest.cpptest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne64_a0_unifield.txttest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_CapturedTransition_btest.cppsrc/pde/IBL/PDEIBL2D.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_NewtonUR_TurbWake_btest.cpp47f45c7f68be47dbe9b4dc6800325961ba99f0081542819120000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduMinor updates 2018-11-21 11:52:00 -050047f45c7f68be47dbe9b4dc6800325961ba99f008Minor updateseditsrc/pde/IBL/PDEIBL2D.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_NewtonUR_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppedittest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne64_a0_unifield.txtedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_CapturedTransition_btest.cppsrc/pde/IBL/PDEIBLUniField.hsrc/pde/IBL/BCIBLUniField.h0b46e6929f4e6c41949bd8d67a31fd7c65a3a4a41542820159000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded an alternative turbulent onset ctau value 2018-11-21 12:09:19 -05000b46e6929f4e6c41949bd8d67a31fd7c65a3a4a4Added an alternative turbulent onset ctau valueeditsrc/pde/IBL/PDEIBLUniField.heditsrc/pde/IBL/BCIBLUniField.hsrc/pde/IBL/SetSolnDofCell_IBL2D.hsrc/pde/IBL/BCIBL2D.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_CapturedTransition_btest.cppsrc/pde/IBL/PDEIBL2D.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_NewtonUR_TurbWake_btest.cpp37830e65081037c908fe24666d095f86b764da711542850164000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduUpdates before running grid convergence on fitted transition 2018-11-21 20:29:24 -050037830e65081037c908fe24666d095f86b764da71Updates before running grid convergence on fitted transitioneditsrc/pde/IBL/BCIBL2D.heditsrc/pde/IBL/SetSolnDofCell_IBL2D.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_CapturedTransition_btest.cppeditsrc/pde/IBL/PDEIBL2D.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_NewtonUR_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppsrc/pde/IBL/BCIBLUniField.hsrc/pde/IBL/PDEIBLUniField.hsrc/pde/IBL/PDEIBL2D.hb30121ee5531d91e84aac94fbdab6462f458f4f81542896961000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edufixed a bug in PDEIBL source. other minor fixes 2018-11-22 09:29:21 -0500b30121ee5531d91e84aac94fbdab6462f458f4f8fixed a bug in PDEIBL source. other minor fixeseditsrc/pde/IBL/BCIBLUniField.heditsrc/pde/IBL/PDEIBL2D.heditsrc/pde/IBL/PDEIBLUniField.htest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DGAdv_IBL_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test_FullUpwind.txtsrc/pde/IBL/PDEIBL2D.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cppsrc/pde/IBL/PDEIBLUniField.htest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DGAdv_IBL_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test_LFflux.txta00d5001dce5d4c28164ada257f05b79dd62ab111542899012000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduUpdated pyrtied files to fix the bug in PDEIBL lag source term introduced on 2018/11/02 in commit 9625612 2018-11-22 10:03:32 -0500a00d5001dce5d4c28164ada257f05b79dd62ab11Updated pyrtied files to fix the bug in PDEIBL lag source term introduced on 2018/11/02 in commit 9625612edittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cppeditsrc/pde/IBL/PDEIBL2D.heditsrc/pde/IBL/PDEIBLUniField.hedittest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DGAdv_IBL_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test_FullUpwind.txtedittest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DGAdv_IBL_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test_LFflux.txtsrc/pde/IBL/PDEIBL2D_impl.h36f5d14be54a63906cfd23c92ebdb27bea22c57b1542899299000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduTweaked a default setting for system test pyrite checks 2018-11-22 10:08:19 -050036f5d14be54a63906cfd23c92ebdb27bea22c57bTweaked a default setting for system test pyrite checkseditsrc/pde/IBL/PDEIBL2D_impl.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_p0_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_p0_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeIBL3eqmClosure_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpp810cae796048f9143b9aa9c70682c74ed4f2aad71542900179000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduCleaned up system tests 2018-11-22 10:22:59 -0500810cae796048f9143b9aa9c70682c74ed4f2aad7Cleaned up system testsdeletetest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppdeletetest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_p0_btest.cppdeletetest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_p0_btest.cppdeletetest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeIBL3eqmClosure_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_CapturedTransition_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_NewtonUR_TurbWake_btest.cpp567074a6187352adfc7483e669ea7b1d418d20d61542905564000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed free-forced nested solver logic for transition at element interface 2018-11-22 11:52:44 -0500567074a6187352adfc7483e669ea7b1d418d20d6Fixed free-forced nested solver logic for transition at element interfaceedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_CapturedTransition_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_NewtonUR_TurbWake_btest.cpptest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBLforcedTransition0p8074822_turbulentWakexfoillag_naca0004_ne64_p1_Test_ExplicitMassCons.txttest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_HDGAdv_IBL_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test.txttest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DG_IBL_Panel_naturalTransition_ntcrit0p6000_naca0004_ne64_p1_Test_FittedTransition_FullUpwind.txtsrc/pde/IBL/PDEIBL2D_impl.htest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBLnaturalTransition_ntcrit0p6500_turbulentWakexfoillag_naca0004_ne64_p1_Test_DGmatchHDG.txttest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_NewtonUR_TurbWake_btest.cpptest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBLnaturalTransition_ntcrit0p6500_turbulentWakexfoillag_naca0004_ne64_p1_Test_HDGcontinuous.txttest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DG_IBL_Panel_naturalTransition_ntcrit0p6000_naca0004_ne64_p1_Test_FittedTransition_LFflux.txttest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_HDGAdv_IBL_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test_continuous.txttest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBLnaturalTransition_ntcrit0p520_turbulentWakexfoillag_naca0004_ne64_p1_Test_ExplicitMassCons.txttest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_laminarBLforcedTransition0p8244925_turbulentWakexfoillag_naca0004_ne64_p1_Test_ExplicitMassCons.txttest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBL_turbulentWakeibl3eqm_naca0004_ne64_p1_Test.txttest/system/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_NACA0004_LamiBL_btest.cpptest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBLforcedTransition0p80408_turbulentWakexfoillag_naca0004_ne64_p1_Test_ExplicitMassCons.txttest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_LamiBL_TurbWake_btest.cpp50593b25cec776fd9c390976641d11a0300ea4e91542934395000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduUpdated and cleaned up pyrite files 2018-11-22 19:53:15 -050050593b25cec776fd9c390976641d11a0300ea4e9Updated and cleaned up pyrite filesedittest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_LamiBL_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_NewtonUR_TurbWake_btest.cppaddtest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DG_IBL_Panel_naturalTransition_ntcrit0p6000_naca0004_ne64_p1_Test_FittedTransition_FullUpwind.txtdeletetest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_laminarBLforcedTransition0p8244925_turbulentWakexfoillag_naca0004_ne64_p1_Test_ExplicitMassCons.txtedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppdeletetest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBLnaturalTransition_ntcrit0p6500_turbulentWakexfoillag_naca0004_ne64_p1_Test_DGmatchHDG.txtedittest/system/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_NACA0004_LamiBL_btest.cppdeletetest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBLnaturalTransition_ntcrit0p520_turbulentWakexfoillag_naca0004_ne64_p1_Test_ExplicitMassCons.txtedittest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_HDGAdv_IBL_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test_continuous.txtdeletetest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBLforcedTransition0p80408_turbulentWakexfoillag_naca0004_ne64_p1_Test_ExplicitMassCons.txtdeletetest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_HDGAdv_IBL_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test.txteditsrc/pde/IBL/PDEIBL2D_impl.hdeletetest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBLforcedTransition0p8074822_turbulentWakexfoillag_naca0004_ne64_p1_Test_ExplicitMassCons.txtdeletetest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBLnaturalTransition_ntcrit0p6500_turbulentWakexfoillag_naca0004_ne64_p1_Test_HDGcontinuous.txtdeletetest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_laminarBL_turbulentWakeibl3eqm_naca0004_ne64_p1_Test.txtaddtest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DG_IBL_Panel_naturalTransition_ntcrit0p6000_naca0004_ne64_p1_Test_FittedTransition_LFflux.txttest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne64_a0_transition.txtacd4d9989454d348eb661eaa986dc3bdea9cfad21542934425000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduUpdated an initial solution file for flow transition system tests 2018-11-22 19:53:45 -0500acd4d9989454d348eb661eaa986dc3bdea9cfad2Updated an initial solution file for flow transition system testsedittest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne64_a0_transition.txttest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_TwoLayerNewton_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_LineSearchNewton_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_NewtonUR_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_Forced_btest.cppe945d3b4f5be7e6d9fb1c5a39150ece7de7ee1c31542941007000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRenaming 2018-11-22 21:43:27 -0500e945d3b4f5be7e6d9fb1c5a39150ece7de7ee1c3Renamingdeletetest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_NewtonUR_TurbWake_btest.cppdeletetest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellForcedTransitionBL_TurbWake_btest.cppaddtest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_Forced_btest.cppaddtest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_TwoLayerNewton_btest.cppdeletetest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cppaddtest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_LineSearchNewton_btest.cppsrc/pde/IBL/FluidModels.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_CapturedTransition_btest.cpp1929a42e6ac3303947b6223637507d0a750f5dd41542943041000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduminor updates 2018-11-22 22:17:21 -05001929a42e6ac3303947b6223637507d0a750f5dd4minor updatesedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_CapturedTransition_btest.cppeditsrc/pde/IBL/FluidModels.htest/system/CodeConsistency/Solve2D_XfoilLikePanelMethod_btest.cpp43a8232da7e3117a85bdba40dcca170d75095cdd1542944614000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded a to-do 2018-11-22 22:43:34 -050043a8232da7e3117a85bdba40dcca170d75095cddAdded a to-doedittest/system/CodeConsistency/Solve2D_XfoilLikePanelMethod_btest.cpptest/system/CodeConsistency/Solve2D_XfoilLikePanelMethod_btest.cpp617b6cf27c3b75c552fdf159877f6b9c25485f2b1542986159000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadded to-do 2018-11-23 10:15:59 -0500617b6cf27c3b75c552fdf159877f6b9c25485f2badded to-doedittest/system/CodeConsistency/Solve2D_XfoilLikePanelMethod_btest.cpptest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DG_IBL_Panel_ntcrit0p6000_naca0004_ne64_p1_Test_FittedTransition_LFflux.txttest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_TwoLayerNewton_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_LineSearchNewton_btest.cpptest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DG_IBL_Panel_naturalTransition_ntcrit0p6000_naca0004_ne64_p1_Test_FittedTransition_FullUpwind.txttest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DG_IBL_Panel_naturalTransition_ntcrit0p6000_naca0004_ne64_p1_Test_FittedTransition_LFflux.txtsrc/pde/IBL/FluidModels.htest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DG_IBL_Panel_ntcrit0p6000_naca0004_ne64_p1_Test_FittedTransition_FullUpwind.txt99cccecfe88e5bf6936fd86747da126b46db38041543076050000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactored two system tests. Added options to change transition model parameters on the fly 2018-11-24 11:14:10 -050099cccecfe88e5bf6936fd86747da126b46db3804Refactored two system tests. Added options to change transition model parameters on the flyedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_LineSearchNewton_btest.cppdeletetest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DG_IBL_Panel_naturalTransition_ntcrit0p6000_naca0004_ne64_p1_Test_FittedTransition_LFflux.txtdeletetest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DG_IBL_Panel_naturalTransition_ntcrit0p6000_naca0004_ne64_p1_Test_FittedTransition_FullUpwind.txtedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_TwoLayerNewton_btest.cppaddtest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DG_IBL_Panel_ntcrit0p6000_naca0004_ne64_p1_Test_FittedTransition_LFflux.txteditsrc/pde/IBL/FluidModels.haddtest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DG_IBL_Panel_ntcrit0p6000_naca0004_ne64_p1_Test_FittedTransition_FullUpwind.txtsrc/pde/IBL/PDEIBL2D.h02ae0ed8c30bef59cfc222b18897acfa204ecff41543088187000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed a bug/feature in an unimportant if statement 2018-11-24 14:36:27 -050002ae0ed8c30bef59cfc222b18897acfa204ecff4Fixed a bug/feature in an unimportant if statementeditsrc/pde/IBL/PDEIBL2D.hsrc/pde/IBL/PDEIBL2D.hf138bdd365fcad35c56c1826c8aee321a3a2d3c11543092605000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduCleanup 2018-11-24 15:50:05 -0500f138bdd365fcad35c56c1826c8aee321a3a2d3c1Cleanupeditsrc/pde/IBL/PDEIBL2D.hsrc/pde/IBL/SetIBLtransitionFrontCellGroup.hsrc/pde/IBL/PDEIBL2D.hsrc/pde/IBL/SetTransitionFrontIBL2D_InteriorTraceGroup.h48f2011bf4d2c4bd9dd3181b7600512036ba7a3e1543112017000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduCleaned up deprecated parts. Fixed LF flux. Refactored transition front source/flux. Editted printout 2018-11-24 21:13:37 -050048f2011bf4d2c4bd9dd3181b7600512036ba7a3eCleaned up deprecated parts. Fixed LF flux. Refactored transition front source/flux. Editted printouteditsrc/pde/IBL/SetIBLtransitionFrontCellGroup.heditsrc/pde/IBL/PDEIBL2D.heditsrc/pde/IBL/SetTransitionFrontIBL2D_InteriorTraceGroup.htest/system/Asymptotic/ErrorEstimateOrder_2D_DGAdvective_Triangle_AD_btest.cppsrc/Discretization/Galerkin/IntegrandBoundaryTrace_Flux_mitState_Nitsche.h295237f73ea6480249a69e1984efa26fd96c7f071543114391000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed uninitialized data in Flux_mitState_Nitsche for pure advective. 2018-11-24 21:53:11 -0500295237f73ea6480249a69e1984efa26fd96c7f07Fixed uninitialized data in Flux_mitState_Nitsche for pure advective.editsrc/Discretization/Galerkin/IntegrandBoundaryTrace_Flux_mitState_Nitsche.hedittest/system/Asymptotic/ErrorEstimateOrder_2D_DGAdvective_Triangle_AD_btest.cpptest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DG_IBL_Panel_ntcrit0p6000_naca0004_ne64_p1_Test_FittedTransition_LFflux.txttest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_TwoLayerNewton_btest.cppsrc/pde/IBL/PDEIBL2D.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_LineSearchNewton_btest.cppc1e89c9e784c19f1c48766d24cf0c03a7d6029b21543118172000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduUpdated pyrite file after updating PDEIBL LFflux related stuff 2018-11-24 22:56:12 -0500c1e89c9e784c19f1c48766d24cf0c03a7d6029b2Updated pyrite file after updating PDEIBL LFflux related stuffeditsrc/pde/IBL/PDEIBL2D.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_TwoLayerNewton_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_LineSearchNewton_btest.cppedittest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DG_IBL_Panel_ntcrit0p6000_naca0004_ne64_p1_Test_FittedTransition_LFflux.txttest/system/Adaptation/SolverInterface_DGAdvective_btest.cpptest/system/Adaptation/SolverInterface_DGBR2_btest.cppe21f68fcb7196fff67c5b4962fb5afcd4f54ed321543121566000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduRemoved variable length arrays 2018-11-24 23:52:46 -0500e21f68fcb7196fff67c5b4962fb5afcd4f54ed32Removed variable length arraysedittest/system/Adaptation/SolverInterface_DGAdvective_btest.cppedittest/system/Adaptation/SolverInterface_DGBR2_btest.cppsrc/Field/Element/GalerkinWeightedIntegral_New.htest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DG_IBL_Panel_ntcrit0p6000_naca0004_ne64_p1_Test_FittedTransition_LFflux.txtsrc/Discretization/Galerkin/IntegrandCell_Galerkin_CutCellTransitionIBL.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_TwoLayerNewton_btest.cppsrc/pde/IBL/PDEIBL2D.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_LineSearchNewton_btest.cppsrc/pde/NDConvert/PDENDConvertSpace2D.htest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DG_IBL_Panel_ntcrit0p6000_naca0004_ne64_p1_Test_FittedTransition_FullUpwind.txt7eef0814926e5488077b95b91cb2a18576468bff1543151695000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduReplaced turbulent BL TS wave growth rate with the previous formulation of interpolating over turbulent sub-element, which makes cd vs ntcrit relation smooth. Updated pyrite files for free transition 2018-11-25 08:14:55 -05007eef0814926e5488077b95b91cb2a18576468bffReplaced turbulent BL TS wave growth rate with the previous formulation of interpolating over turbulent sub-element, which makes cd vs ntcrit relation smooth. Updated pyrite files for free transitioneditsrc/Discretization/Galerkin/IntegrandCell_Galerkin_CutCellTransitionIBL.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_LineSearchNewton_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_TwoLayerNewton_btest.cppedittest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DG_IBL_Panel_ntcrit0p6000_naca0004_ne64_p1_Test_FittedTransition_FullUpwind.txteditsrc/pde/NDConvert/PDENDConvertSpace2D.heditsrc/Field/Element/GalerkinWeightedIntegral_New.hedittest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DG_IBL_Panel_ntcrit0p6000_naca0004_ne64_p1_Test_FittedTransition_LFflux.txteditsrc/pde/IBL/PDEIBL2D.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_LineSearchNewton_btest.cppsrc/pde/IBL/PDEIBL2D.h8cf64137009f0adc30acd780d5b74be3d367628e1543155564000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduMinor refactoring 2018-11-25 09:19:24 -05008cf64137009f0adc30acd780d5b74be3d367628eMinor refactoringedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_LineSearchNewton_btest.cppeditsrc/pde/IBL/PDEIBL2D.htest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_forcedTransition0p8244925_naca0004_ne64_p1_Test_CapturedTransition_LFflux.txttest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_CapturedTransition_btest.cppsrc/pde/IBL/PDEIBLUniField.h0b0ce2e2be16c53d8c01a94ecf4bd9c9e05802081543155873000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed LFflux for IBLUniField. Refactored test case and updated pyrite file 2018-11-25 09:24:33 -05000b0ce2e2be16c53d8c01a94ecf4bd9c9e0580208Fixed LFflux for IBLUniField. Refactored test case and updated pyrite fileedittest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_forcedTransition0p8244925_naca0004_ne64_p1_Test_CapturedTransition_LFflux.txtedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_CapturedTransition_btest.cppeditsrc/pde/IBL/PDEIBLUniField.htest/system/Adaptation/SolverInterface_DGAdvective_btest.cpptest/system/Adaptation/SolverInterface_DGBR2_btest.cpp6bfe46aebe18ec4835ced56173a9fcdf7bff9da61543158567000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMissed a few variable length arrays 2018-11-25 10:09:27 -05006bfe46aebe18ec4835ced56173a9fcdf7bff9da6Missed a few variable length arraysedittest/system/Adaptation/SolverInterface_DGAdvective_btest.cppedittest/system/Adaptation/SolverInterface_DGBR2_btest.cpptest/sandbox/Adapt2D_DGBR2_Euler_GilesPierce_AV_toy.cpp9529e02704eaf5ca886dde53eb29997fe51bc6dd1543166231000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduOne more warning 2018-11-25 12:17:11 -05009529e02704eaf5ca886dde53eb29997fe51bc6ddOne more warningedittest/sandbox/Adapt2D_DGBR2_Euler_GilesPierce_AV_toy.cpptest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne64_a0_unifield.txttest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_CapturedTransition_btest.cppsrc/pde/IBL/PDEIBLUniField.ha8879bfd15f2dedaf9cf5e24b4ca5c9a802c11491543172711000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactored PDEIBLUniField member field to allow for parameter ntcrit sweep. Updated initial solution guess to be based on an existing IBL solution. 2018-11-25 14:05:11 -0500a8879bfd15f2dedaf9cf5e24b4ca5c9a802c1149Refactored PDEIBLUniField member field to allow for parameter ntcrit sweep. Updated initial solution guess to be based on an existing IBL solution.edittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_CapturedTransition_btest.cppeditsrc/pde/IBL/PDEIBLUniField.hedittest/system/IO/CodeConsistency/IBL/naca0004_qinit_ne64_a0_unifield.txtsrc/Discretization/Galerkin/FunctionalCell_Galerkin.htest/sandbox/Adapt3D_Mesh_Optimizer_toy.cpp915a985b689cfade0d38116cdf323dd5582921641543180188000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed warnings 2018-11-25 16:09:48 -0500915a985b689cfade0d38116cdf323dd558292164Fixed warningsedittest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppeditsrc/Discretization/Galerkin/FunctionalCell_Galerkin.htest/unit/CMakeLists.txtscripts/jenkins/SANS_Commit.sh67e13c5f6d848346ca7faeb73d9c5343b2be996d1543194600000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduBetter cleanup of coverage information 2018-11-25 20:10:00 -050067e13c5f6d848346ca7faeb73d9c5343b2be996dBetter cleanup of coverage informationedittest/unit/CMakeLists.txteditscripts/jenkins/SANS_Commit.shscripts/jenkins/SANS_Nightly.sh22a8f88a4f3a5f6b5bdd6f5fb910ae5bec0e620a1543202716000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduDon't build sandbox with nightly 2018-11-25 22:25:16 -050022a8f88a4f3a5f6b5bdd6f5fb910ae5bec0e620aDon't build sandbox with nightlyeditscripts/jenkins/SANS_Nightly.shscripts/jenkins/SANS_Nightly.sh7233459dcb981a6026c3966fec9e1442c37b0da71543203417000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduClang analyzer should still build sandbox 2018-11-25 22:36:57 -05007233459dcb981a6026c3966fec9e1442c37b0da7Clang analyzer should still build sandboxeditscripts/jenkins/SANS_Nightly.shsrc/Adaptation/MOESS/NodalMetrics.cppsrc/Adaptation/MOESS/NLOPT/MOESS_Gradation_Optimizer_NLOPT.hsrc/Adaptation/MOESS/NodalMetrics.hsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppsrc/Adaptation/MOESS/MOESSParams.hsrc/Adaptation/MOESS/NLOPT/MOESS_Gradation_Optimizer_NLOPT.cppsrc/Adaptation/MOESS/MOESS.cpptest/unit/Adaptation/MOESS/MOESS_Gradation_Optimizer_NLOPT_btest_OFF.cpptest/unit/Adaptation/MOESS/MOESS_Gradation_Optimizer_NLOPT_btest.cpp826e55d01adf6cba4c68c2d3c336d98852ed43ef1543208888000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduRevived gradation penalty. Needs lots of tweaks and studying 2018-11-26 00:08:08 -0500826e55d01adf6cba4c68c2d3c336d98852ed43efRevived gradation penalty. Needs lots of tweaks and studyingeditsrc/Adaptation/MOESS/MOESS.cppeditsrc/Adaptation/MOESS/NodalMetrics.cppeditsrc/Adaptation/MOESS/NLOPT/MOESS_Gradation_Optimizer_NLOPT.heditsrc/Adaptation/MOESS/NLOPT/MOESS_Gradation_Optimizer_NLOPT.cppeditsrc/Adaptation/MOESS/NodalMetrics.heditsrc/Adaptation/MOESS/MOESSParams.haddtest/unit/Adaptation/MOESS/MOESS_Gradation_Optimizer_NLOPT_btest.cppeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppdeletetest/unit/Adaptation/MOESS/MOESS_Gradation_Optimizer_NLOPT_btest_OFF.cppsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion2D.htest/unit/pde/AdvectionDiffusion/BCAdvectionDiffusion2D_btest.cpptest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cpp2b45ba49ad9200cb895501b3eb0a6e646a7cce7a1543283501000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.eduAdded unit test for 2D+T implementations. 2018-11-26 20:51:41 -05002b45ba49ad9200cb895501b3eb0a6e646a7cce7aAdded unit test for 2D+T implementations.edittest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cppedittest/unit/pde/AdvectionDiffusion/BCAdvectionDiffusion2D_btest.cppeditsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion2D.htest/unit/UnitGrids/XField4D_1Ptope_X1_1Group.cpptest/unit/UnitGrids/XField4D_1Ptope_X1_1Group_btest.cpptest/unit/UnitGrids/XField4D_1Ptope_X1_1Group.h53e584bf77316a03b27931ba85989d7cfdd49fff1543331294000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.eduWorking on pentatope tests. 2018-11-27 10:08:14 -050053e584bf77316a03b27931ba85989d7cfdd49fffWorking on pentatope tests.edittest/unit/UnitGrids/XField4D_1Ptope_X1_1Group.cppedittest/unit/UnitGrids/XField4D_1Ptope_X1_1Group_btest.cppedittest/unit/UnitGrids/XField4D_1Ptope_X1_1Group.hsrc/Adaptation/MOESS/NLOPT/MOESS_PX_Optimizer_NLOPT.cppe491459eae5248dd578d2fdef414a4ddedd3ad031543333895000https://acdl.mit.edu/csi/user/ursachiursachiursachi@mit.eduChanged scaling factor for objective 2018-11-27 10:51:35 -0500e491459eae5248dd578d2fdef414a4ddedd3ad03Changed scaling factor for objectiveeditsrc/Adaptation/MOESS/NLOPT/MOESS_PX_Optimizer_NLOPT.cppsrc/Adaptation/MOESS/SolverInterface_L2Project.h0f0d8f5a4363aad71c869e008c842487cdb3a04f1543333922000https://acdl.mit.edu/csi/user/ursachiursachiursachi@mit.eduAdded 1D and 2D includes 2018-11-27 10:52:02 -05000f0d8f5a4363aad71c869e008c842487cdb3a04fAdded 1D and 2D includeseditsrc/Adaptation/MOESS/SolverInterface_L2Project.hsrc/Meshing/EGTess/AFLR4.hsrc/Meshing/EGTess/EGTessModel_aflr4.cppsrc/Meshing/EGTess/AFLR4.cppCMakeInclude/Finds/FindAFLR.cmakeCMakeInclude/Checks/aflr_test.cxxc5e08c165fb1316db9029ac1342c2d68e4d72e431543339458000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdates for latest version of AFLR 2018-11-27 12:24:18 -0500c5e08c165fb1316db9029ac1342c2d68e4d72e43Updates for latest version of AFLReditsrc/Meshing/EGTess/AFLR4.heditsrc/Meshing/EGTess/EGTessModel_aflr4.cppeditCMakeInclude/Finds/FindAFLR.cmakeeditsrc/Meshing/EGTess/AFLR4.cppeditCMakeInclude/Checks/aflr_test.cxxsrc/Adaptation/MOESS/NLOPT/MOESS_Gradation_Optimizer_NLOPT.hsrc/Adaptation/MOESS/NodalMetrics.cppscripts/jenkins/SANS_Commit.shsrc/LinearAlgebra/DenseLinAlg/StaticSize/Eigen/MatrixSymS_Eigen_impl.hsrc/Meshing/Metric/MetricOps.htest/unit/LinearAlgebra/DenseLinAlg/MatrixSymS_Eigen_btest.cppsrc/Adaptation/MOESS/NLOPT/MOESS_Gradation_Optimizer_NLOPT.cppsrc/Meshing/EGTess/EGTessModel_aflr4.cpptest/unit/Adaptation/MOESS/MOESS_Gradation_Optimizer_NLOPT_btest.cpp6ac85ee5a0bfd0502c0a7e965ed9e8ca8f5edf7c1543360069000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduGradation still needs more work... 2018-11-27 18:07:49 -05006ac85ee5a0bfd0502c0a7e965ed9e8ca8f5edf7cGradation still needs more work...editsrc/Adaptation/MOESS/NLOPT/MOESS_Gradation_Optimizer_NLOPT.hedittest/unit/LinearAlgebra/DenseLinAlg/MatrixSymS_Eigen_btest.cppeditsrc/Adaptation/MOESS/NLOPT/MOESS_Gradation_Optimizer_NLOPT.cppeditsrc/Meshing/EGTess/EGTessModel_aflr4.cppeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/Eigen/MatrixSymS_Eigen_impl.heditsrc/Meshing/Metric/MetricOps.hedittest/unit/Adaptation/MOESS/MOESS_Gradation_Optimizer_NLOPT_btest.cppeditscripts/jenkins/SANS_Commit.sheditsrc/Adaptation/MOESS/NodalMetrics.cppsrc/LinearAlgebra/DenseLinAlg/StaticSize/Eigen/MatrixSymS_Eigen_impl.h27cdc86edc41fd21c68feb4b813d4b8b7fed44891543360946000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix compiler error 2018-11-27 18:22:26 -050027cdc86edc41fd21c68feb4b813d4b8b7fed4489Fix compiler erroreditsrc/LinearAlgebra/DenseLinAlg/StaticSize/Eigen/MatrixSymS_Eigen_impl.htest/unit/LinearAlgebra/DenseLinAlg/MatrixSymS_Eigen_btest.cpp95b670839c81aad6f7b06e37789e9f6cc0ab261c1543364741000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed arry bound typo in test 2018-11-27 19:25:41 -050095b670839c81aad6f7b06e37789e9f6cc0ab261cFixed arry bound typo in testedittest/unit/LinearAlgebra/DenseLinAlg/MatrixSymS_Eigen_btest.cpptest/unit/Field/Element/ElementXFieldVolume_4D_Tetrahedron_btest.cpp1f00ef3269648633e03deefa745ff0d8b727420b1543444377000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edumore tests for orientations of tets in 4d 2018-11-28 17:32:57 -05001f00ef3269648633e03deefa745ff0d8b727420bmore tests for orientations of tets in 4dedittest/unit/Field/Element/ElementXFieldVolume_4D_Tetrahedron_btest.cpptest/sandbox/Adapt4D_Mesh_Optimizer_toy.cpptest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppeac467a846a696ada30cb0ea1b8de83eae78c9a81543444406000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edulingering changes 2018-11-28 17:33:26 -0500eac467a846a696ada30cb0ea1b8de83eae78c9a8lingering changesedittest/sandbox/Adapt4D_Mesh_Optimizer_toy.cppedittest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppsrc/Field/FieldSpacetime_DG_BoundaryTrace.hsrc/Field/FieldSpacetime_DG_InteriorTrace_impl.hsrc/Field/FieldVolume_DG_Cell_Instantiate_4D.cppsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatMul/MatMul_Native_Real.cppsrc/Field/tools/for_each_GhostBoundaryTraceGroup.hsrc/Field/FieldSpacetime_DG_Trace_impl.hsrc/Field/FieldSpacetime_DG_Trace.hsrc/Field/Element/ElementAssociativitySpacetime.hsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cppsrc/Field/FieldSpacetime_DG_InteriorTrace.hsrc/Field/FieldSpacetime_DG_Cell_Instantiate_4D.cpptest/unit/UnitGrids/XField_KuhnFreudenthal.cppsrc/Field/CMakeLists.txttest/sandbox/Adapt3D_DGBR2_AD_HemisphereCylinder_toy.cppsrc/Field/FieldSpacetime_DG_InteriorTrace_Instantiate_4D.cppsrc/Field/FieldSpacetime_DG_Trace_Instantiate_4D.cppsrc/Field/tools/for_each_BoundaryTraceGroup_Cell.htest/unit/IO/Field/Field4D_DG_Pentatope_pattern.txtsrc/Field/FieldVolume_DG_BoundaryTrace_Instantiate_4D.cppsrc/Field/FieldVolume_DG_InteriorTrace_Instantiate_4D.cppsrc/Field/FieldSpacetime_DG_Cell_impl.hsrc/Field/FieldSpacetime_DG_Cell.hsrc/Field/tools/for_each_GhostBoundaryTraceGroup_Cell.hsrc/Field/FieldSpacetime_DG_BoundaryTrace_Instantiate_4D.cppsrc/Field/FieldSpacetime_DG_BoundaryTrace_impl.htest/unit/Field/Field4D_DG_Pentatope_btest.cppsrc/Field/FieldVolume_DG_Trace_Instantiate_4D.cppsrc/Field/FieldSpacetime_Instantiate_4D.cpp8728668dd3554e569bdc605f804c6f7f6998f9911543444515000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduDG fields in 4d + unit tests 2018-11-28 17:35:15 -05008728668dd3554e569bdc605f804c6f7f6998f991DG fields in 4d + unit testsaddsrc/Field/FieldSpacetime_DG_Cell.haddsrc/Field/FieldVolume_DG_BoundaryTrace_Instantiate_4D.cppaddsrc/Field/FieldSpacetime_DG_Cell_Instantiate_4D.cppeditsrc/Field/tools/for_each_GhostBoundaryTraceGroup_Cell.haddsrc/Field/FieldSpacetime_DG_BoundaryTrace.heditsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cppeditsrc/Field/tools/for_each_BoundaryTraceGroup_Cell.heditsrc/Field/tools/for_each_GhostBoundaryTraceGroup.haddtest/unit/Field/Field4D_DG_Pentatope_btest.cppaddsrc/Field/FieldSpacetime_DG_BoundaryTrace_Instantiate_4D.cppedittest/sandbox/Adapt3D_DGBR2_AD_HemisphereCylinder_toy.cppaddsrc/Field/FieldSpacetime_DG_Cell_impl.haddsrc/Field/FieldSpacetime_DG_BoundaryTrace_impl.haddsrc/Field/FieldSpacetime_DG_InteriorTrace.haddsrc/Field/FieldSpacetime_DG_InteriorTrace_impl.haddsrc/Field/FieldSpacetime_DG_Trace_impl.heditsrc/Field/FieldSpacetime_Instantiate_4D.cppaddtest/unit/IO/Field/Field4D_DG_Pentatope_pattern.txteditsrc/Field/Element/ElementAssociativitySpacetime.haddsrc/Field/FieldVolume_DG_Cell_Instantiate_4D.cppedittest/unit/UnitGrids/XField_KuhnFreudenthal.cppaddsrc/Field/FieldVolume_DG_Trace_Instantiate_4D.cppaddsrc/Field/FieldSpacetime_DG_Trace.haddsrc/Field/FieldSpacetime_DG_InteriorTrace_Instantiate_4D.cppeditsrc/Field/CMakeLists.txteditsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatMul/MatMul_Native_Real.cppaddsrc/Field/FieldSpacetime_DG_Trace_Instantiate_4D.cppaddsrc/Field/FieldVolume_DG_InteriorTrace_Instantiate_4D.cpptest/unit/UnitGrids/XField_KuhnFreudenthal.cpp4efc359e491a8f1ebfd8e77c6e97f960775f45231543445001000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edusilly typo 2018-11-28 17:43:21 -05004efc359e491a8f1ebfd8e77c6e97f960775f4523silly typoedittest/unit/UnitGrids/XField_KuhnFreudenthal.cpptest/unit/Field/Field4D_DG_Pentatope_btest.cpp5fb723971cedea5c2c12a47e647387552e9acc4c1543450820000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.educan only use KF triangulation if avro is hooked in 2018-11-28 19:20:20 -05005fb723971cedea5c2c12a47e647387552e9acc4ccan only use KF triangulation if avro is hooked inedittest/unit/Field/Field4D_DG_Pentatope_btest.cpptest/unit/Field/Element/ElementXFieldVolume_4D_Tetrahedron_btest.cpptest/unit/UnitGrids/XField4D_1Ptope_X1_1Group_btest.cppsrc/Field/Element/ElementXFieldVolume_Instantiate_4D.cpptest/unit/UnitGrids/XField4D_1Ptope_X1_1Group.cpp62919f7753456dcb271662df0186e2d9bb0e19d51543508105000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.eduWorking on unit grids... 2018-11-29 11:15:05 -050062919f7753456dcb271662df0186e2d9bb0e19d5Working on unit grids...edittest/unit/UnitGrids/XField4D_1Ptope_X1_1Group_btest.cppedittest/unit/UnitGrids/XField4D_1Ptope_X1_1Group.cppeditsrc/Field/Element/ElementXFieldVolume_Instantiate_4D.cppedittest/unit/Field/Element/ElementXFieldVolume_4D_Tetrahedron_btest.cppsrc/pde/AnalyticFunction/ScalarFunction2D.hsrc/pde/AnalyticFunction/ScalarFunction2D.cppsrc/pde/NDConvert/BCNDConvertSpaceTime2D.htest/unit/UnitGrids/XField3D_1Tet_X1_1Group.cpptest/unit/pde/AnalyticFunction/ScalarFunction2D_btest.cppb1d2a67996d840de5b4dedb6c7e48917dc1b5a421543523079000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.eduAnother formatting fix. 2018-11-29 15:24:39 -0500b1d2a67996d840de5b4dedb6c7e48917dc1b5a42Another formatting fix.editsrc/pde/AnalyticFunction/ScalarFunction2D.hedittest/unit/UnitGrids/XField3D_1Tet_X1_1Group.cppedittest/unit/pde/AnalyticFunction/ScalarFunction2D_btest.cppeditsrc/pde/NDConvert/BCNDConvertSpaceTime2D.heditsrc/pde/AnalyticFunction/ScalarFunction2D.cppsrc/pde/AnalyticFunction/ScalarFunction2D.cppsrc/pde/AnalyticFunction/ScalarFunction2D.htest/unit/UnitGrids/XField4D_1Ptope_X1_1Group.cppsrc/pde/NDConvert/BCNDConvertSpaceTime2D.htest/unit/UnitGrids/XField3D_1Tet_X1_1Group.cpptest/unit/pde/AnalyticFunction/ScalarFunction2D_btest.cpp019e9ebde7b561ef1d11d7869be84b2a3f1260ff1543537879000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.eduAnother formatting fix. 2018-11-29 19:31:19 -0500019e9ebde7b561ef1d11d7869be84b2a3f1260ffAnother formatting fix.editsrc/pde/AnalyticFunction/ScalarFunction2D.cppedittest/unit/UnitGrids/XField3D_1Tet_X1_1Group.cppeditsrc/pde/AnalyticFunction/ScalarFunction2D.heditsrc/pde/NDConvert/BCNDConvertSpaceTime2D.hedittest/unit/pde/AnalyticFunction/ScalarFunction2D_btest.cppedittest/unit/UnitGrids/XField4D_1Ptope_X1_1Group.cppsrc/NonLinearSolver/LineUpdate/NewtonLineUpdate.h368a52820d74d72dedba3997e1b73bfd29ee74591543586181000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduminor editting 2018-11-30 08:56:21 -0500368a52820d74d72dedba3997e1b73bfd29ee7459minor edittingeditsrc/NonLinearSolver/LineUpdate/NewtonLineUpdate.htest/sandbox/Solve3D_DGBR2_AD_ST_toy.cpptest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cppd0f45ac447fd9cb27457d526663b99dbd7f35b931543594368000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.eduFix includes. 2018-11-30 11:12:48 -0500d0f45ac447fd9cb27457d526663b99dbd7f35b93Fix includes.edittest/sandbox/Solve3D_DGBR2_AD_ST_toy.cppedittest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cpptest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cpptest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cpptest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppad197c1781b41b4e548008f1abe6df5586fdd9bd1543595213000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edupre merge 2018-11-30 11:26:53 -0500ad197c1781b41b4e548008f1abe6df5586fdd9bdpre mergeedittest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cppedittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppedittest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cpptest/sandbox/Solve3D_DGBR2_AD_ST_toy.cpptest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cpp0b619ee92f6dc121b259964d810a790b99dbc1cb1543605783000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.eduTaking the warning machete to things. 2018-11-30 14:23:03 -05000b619ee92f6dc121b259964d810a790b99dbc1cbTaking the warning machete to things.edittest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cppedittest/sandbox/Solve3D_DGBR2_AD_ST_toy.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_TwoLayerNewton_btest.cpp560bd622424e5b0a1b24812cca12c0f4db1d0eeb1543625728000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactored test case input 2018-11-30 19:55:28 -0500560bd622424e5b0a1b24812cca12c0f4db1d0eebRefactored test case inputedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_TwoLayerNewton_btest.cppsrc/Python/PyDict.cppsrc/UserInterfaces/capsAIM/sansLIPAIM.cpp4bb374e8c053c23879e2289550b8baa9d283efdf1543630870000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUdpates to sansLIPAIM to work with new CAPS dataTransfer setup 2018-11-30 21:21:10 -05004bb374e8c053c23879e2289550b8baa9d283efdfUdpates to sansLIPAIM to work with new CAPS dataTransfer setupeditsrc/UserInterfaces/capsAIM/sansLIPAIM.cppeditsrc/Python/PyDict.cppsrc/Discretization/DG/FunctionalCell_DGBR2.hsrc/Adaptation/MOESS/SolverInterface_L2Project.hsrc/pde/AnalyticFunction/Function4D.hsrc/pde/NDConvert/FunctionNDConvertSpace4D.hsrc/Field/Element/ElementIntegral.hsrc/Discretization/Galerkin/FunctionalCell_Galerkin.hsrc/pde/OutputCell_SolutionErrorSquared.hsrc/pde/AnalyticFunction/CMakeLists.txtsrc/Quadrature/QuadratureSpacetime_Pentatope.cppsrc/pde/AnalyticFunction/ScalarFunction4D.hsrc/pde/NDConvert/OutputNDConvertSpace4D.htest/system/Asymptotic/ErrorOrder_4D_DG_Pentatope_btest.cppsrc/pde/AnalyticFunction/ScalarFunction4D.cppfadc869c20ddb5674a86f6e485d398e232f0381f1543680525000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edusystem test for DG with pentatopes 2018-12-01 11:08:45 -0500fadc869c20ddb5674a86f6e485d398e232f0381fsystem test for DG with pentatopeseditsrc/Discretization/Galerkin/FunctionalCell_Galerkin.haddtest/system/Asymptotic/ErrorOrder_4D_DG_Pentatope_btest.cppaddsrc/pde/AnalyticFunction/ScalarFunction4D.heditsrc/Adaptation/MOESS/SolverInterface_L2Project.heditsrc/pde/AnalyticFunction/CMakeLists.txteditsrc/Quadrature/QuadratureSpacetime_Pentatope.cppaddsrc/pde/AnalyticFunction/Function4D.heditsrc/Discretization/DG/FunctionalCell_DGBR2.haddsrc/pde/NDConvert/OutputNDConvertSpace4D.haddsrc/pde/NDConvert/FunctionNDConvertSpace4D.haddsrc/pde/AnalyticFunction/ScalarFunction4D.cppeditsrc/Field/Element/ElementIntegral.heditsrc/pde/OutputCell_SolutionErrorSquared.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_LineSearchNewton_btest.cppbdb7a1e90731ec9a7b749a4f43e22c66a39327541543784820000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduMinor update 2018-12-02 16:07:00 -0500bdb7a1e90731ec9a7b749a4f43e22c66a3932754Minor updateedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_LineSearchNewton_btest.cppsrc/pde/IBL/SecondaryVar2D_impl.h96150ada0c0eb19bc4956f5e1b3deac02ea66a6b1543811283000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded an option of wake ctau_eq but not used 2018-12-02 23:28:03 -050096150ada0c0eb19bc4956f5e1b3deac02ea66a6bAdded an option of wake ctau_eq but not usededitsrc/pde/IBL/SecondaryVar2D_impl.htest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cpptest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cpp90de68434afcf4a3d2bcf0feda2579e1229346a61543868721000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumoving to hyper branch 2018-12-03 15:25:21 -050090de68434afcf4a3d2bcf0feda2579e1229346a6moving to hyper branchedittest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppedittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cpptest/unit/Field/Element/ElementXFieldVolume_4D_Tetrahedron_btest.cpp810750f2e8d2abb45b3dce98317726d98611ff0b1544018974000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduuse SANS convention for trace orientation instead of the one used in avro 2018-12-05 09:09:34 -0500810750f2e8d2abb45b3dce98317726d98611ff0buse SANS convention for trace orientation instead of the one used in avroeditsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cppedittest/unit/Field/Element/ElementXFieldVolume_4D_Tetrahedron_btest.cpptest/unit/UnitGrids/XField4D_2Ptope_X1_1Group.htest/unit/UnitGrids/XField4D_2Ptope_X1_1Group_btest.cpptest/unit/UnitGrids/XField4D_1Ptope_X1_1Group.htest/unit/UnitGrids/XField4D_24Ptope_X1_1Group.cpptest/unit/UnitGrids/XField4D_1Ptope_X1_1Group.cpptest/unit/UnitGrids/XField4D_1Ptope_X1_1Group_btest.cpptest/unit/UnitGrids/CMakeLists.txttest/unit/UnitGrids/XField4D_2Ptope_X1_1Group.cppsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cpptest/unit/UnitGrids/XField4D_24Ptope_X1_1Group.h9e414fadd2ffe382f44a11fbc4f84afd0bd93e021544027327000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.edu1Ptope test working, fixed assumptions on nodal definitions. 2018-12-05 11:28:47 -05009e414fadd2ffe382f44a11fbc4f84afd0bd93e021Ptope test working, fixed assumptions on nodal definitions.addtest/unit/UnitGrids/XField4D_2Ptope_X1_1Group.hedittest/unit/UnitGrids/XField4D_1Ptope_X1_1Group_btest.cppedittest/unit/UnitGrids/CMakeLists.txtaddtest/unit/UnitGrids/XField4D_24Ptope_X1_1Group.haddtest/unit/UnitGrids/XField4D_2Ptope_X1_1Group_btest.cppedittest/unit/UnitGrids/XField4D_1Ptope_X1_1Group.hedittest/unit/UnitGrids/XField4D_1Ptope_X1_1Group.cppaddtest/unit/UnitGrids/XField4D_2Ptope_X1_1Group.cppaddtest/unit/UnitGrids/XField4D_24Ptope_X1_1Group.cppeditsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cpptest/unit/UnitGrids/XField4D_2Ptope_X1_1Group.cpptest/unit/UnitGrids/XField4D_2Ptope_X1_1Group_btest.cppf49465be1bc433a80c5ec11a3a5ac0efbfee95d21544040671000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.edu2Tope unitgrid working, testcase working. 2018-12-05 15:11:11 -0500f49465be1bc433a80c5ec11a3a5ac0efbfee95d22Tope unitgrid working, testcase working.edittest/unit/UnitGrids/XField4D_2Ptope_X1_1Group.cppedittest/unit/UnitGrids/XField4D_2Ptope_X1_1Group_btest.cpptest/unit/UnitGrids/XField4D_24Ptope_X1_1Group.cppc3bab4064cf09db649182fcf4b05a20eea38fd421544042224000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.eduTurned off tesseract for push. 2018-12-05 15:37:04 -0500c3bab4064cf09db649182fcf4b05a20eea38fd42Turned off tesseract for push.edittest/unit/UnitGrids/XField4D_24Ptope_X1_1Group.cppCMakeInclude/Dependencies.cmakesrc/Field/output_Tecplot_LIP.cpp43d23bf3443ddd8c45f4cb3bc777936dac628f321544069399000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduLight LIP tecplot files 2018-12-05 23:09:59 -050043d23bf3443ddd8c45f4cb3bc777936dac628f32Light LIP tecplot fileseditCMakeInclude/Dependencies.cmakeeditsrc/Field/output_Tecplot_LIP.cppsrc/Field/output_Tecplot_LIP.cppcb27cd5abadf2ddb41d0f091741314e7a52154a81544099920000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduSmaller tecplot file for LIP 2018-12-06 07:38:40 -0500cb27cd5abadf2ddb41d0f091741314e7a52154a8Smaller tecplot file for LIPeditsrc/Field/output_Tecplot_LIP.cpptest/unit/UnitGrids/XField4D_2Ptope_X1_1Group_btest.cpptest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cpp6dbdd89f202da2a4093f323b5f1283c9197156e21544104715000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.eduFix scoping issues. 2018-12-06 08:58:35 -05006dbdd89f202da2a4093f323b5f1283c9197156e2Fix scoping issues.edittest/sandbox/Adapt3D_DGBR2_AD_ST_toy.cppedittest/unit/UnitGrids/XField4D_2Ptope_X1_1Group_btest.cppsrc/Field/output_Tecplot_LIP.cpp518605af44990db3daff5833fb6657ed201941091544110475000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed warnings 2018-12-06 10:34:35 -0500518605af44990db3daff5833fb6657ed20194109Fixed warningseditsrc/Field/output_Tecplot_LIP.cppsrc/LinearAlgebra/DenseLinAlg/StaticSize/SVD/MatrixS_SVD_3x3.cpp9abd62d0c1bded33c72bcec8eac5fbcc6416b8f91544112000000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded comment with origin of SVD3 algorithm 2018-12-06 11:00:00 -05009abd62d0c1bded33c72bcec8eac5fbcc6416b8f9Added comment with origin of SVD3 algorithmeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/SVD/MatrixS_SVD_3x3.cpptest/unit/UnitGrids/XField4D_library.cpptest/unit/UnitGrids/XField4D_library.htest/unit/UnitGrids/XField4D_library_btest.cppf8a10acd056f6d59d644ecea471fcbd8dc816c761544125421000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduhandmade unit grid: 1 pentatope with 5 pentatope neighbours 2018-12-06 14:43:41 -0500f8a10acd056f6d59d644ecea471fcbd8dc816c76handmade unit grid: 1 pentatope with 5 pentatope neighboursaddtest/unit/UnitGrids/XField4D_library.cppaddtest/unit/UnitGrids/XField4D_library.haddtest/unit/UnitGrids/XField4D_library_btest.cppsrc/Field/XFieldSpacetime_checkGrid_impl.h5721f97bf124de29b04b5418ece01f35ebafe1311544125483000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduallow all orientations of traces (1 to 12) in checkGrid 2018-12-06 14:44:43 -05005721f97bf124de29b04b5418ece01f35ebafe131allow all orientations of traces (1 to 12) in checkGrideditsrc/Field/XFieldSpacetime_checkGrid_impl.hsrc/Field/XFieldSpacetime_Local.cppsrc/Field/XFieldSpacetime_Local.h3e2e014c53a8a6e15b44554d41a31656cf16e4d61544125516000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edulocal grid extraction for pentatopes 2018-12-06 14:45:16 -05003e2e014c53a8a6e15b44554d41a31656cf16e4d6local grid extraction for pentatopesaddsrc/Field/XFieldSpacetime_Local.haddsrc/Field/XFieldSpacetime_Local.cppsrc/Field/XField_CellToTrace.hsrc/Field/XField_CellToTrace.cppec0c2d07c0fe189180864ebc40252ea42aa2ffa91544125535000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.educell to trace connectivity for pentatopes 2018-12-06 14:45:35 -0500ec0c2d07c0fe189180864ebc40252ea42aa2ffa9cell to trace connectivity for pentatopeseditsrc/Field/XField_CellToTrace.cppeditsrc/Field/XField_CellToTrace.hsrc/Field/Element/ElementAssociativitySpacetimeConstructor.cpptest/unit/Field/Element/ElementAssociativitySpacetime_Pentatope_btest.cppd11ef7a2df93695fc4067710c7798e35e9b6fc001544125587000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edufinish implementation of element associativity of pentatopes 2018-12-06 14:46:27 -0500d11ef7a2df93695fc4067710c7798e35e9b6fc00finish implementation of element associativity of pentatopeseditsrc/Field/Element/ElementAssociativitySpacetimeConstructor.cppedittest/unit/Field/Element/ElementAssociativitySpacetime_Pentatope_btest.cpptest/unit/Field/XField4D_Local_btest.cpp67a7808dca47b507a8c36680fecc347efb6dc1b31544125659000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduunit tests for local grid extraction around pentatopes (single pentatope and single pentatope surrounded by neighbours) 2018-12-06 14:47:39 -050067a7808dca47b507a8c36680fecc347efb6dc1b3unit tests for local grid extraction around pentatopes (single pentatope and single pentatope surrounded by neighbours)addtest/unit/Field/XField4D_Local_btest.cppsrc/Field/CMakeLists.txttest/system/Asymptotic/ErrorOrder_4D_DG_Pentatope_btest.cpptest/unit/UnitGrids/CMakeLists.txtsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cppa591fc6014b28850b315bf80a198eac1874cc86f1544125672000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduother minor changes 2018-12-06 14:47:52 -0500a591fc6014b28850b315bf80a198eac1874cc86fother minor changeseditsrc/Field/CMakeLists.txtedittest/system/Asymptotic/ErrorOrder_4D_DG_Pentatope_btest.cppedittest/unit/UnitGrids/CMakeLists.txteditsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cpptest/unit/UnitGrids/XField4D_library.cppb7e85dc85f36c9c8a495a39d14e73fdc89661d681544144079000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.educomm rank = 0 using xfield_lagrange 2018-12-06 19:54:39 -0500b7e85dc85f36c9c8a495a39d14e73fdc89661d68comm rank = 0 using xfield_lagrangeedittest/unit/UnitGrids/XField4D_library.cpptest/unit/UnitGrids/CMakeLists.txttest/unit/UnitGrids/XField4D_24Ptope_X1_1Group_btest.cpptest/unit/UnitGrids/XField4D_24Ptope_X1_1Group.cpp712c4b24d3d4c7f8c9965c8223ae9d66edba0d5f1544164413000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.edu24Ptope working, passing checkGrids(). test in progress. 2018-12-07 01:33:33 -0500712c4b24d3d4c7f8c9965c8223ae9d66edba0d5f24Ptope working, passing checkGrids(). test in progress.edittest/unit/UnitGrids/XField4D_24Ptope_X1_1Group.cppedittest/unit/UnitGrids/CMakeLists.txtaddtest/unit/UnitGrids/XField4D_24Ptope_X1_1Group_btest.cpptest/unit/UnitGrids/XField4D_library.cpptest/unit/Field/XField4D_Local_btest.cpptest/unit/UnitGrids/XField4D_library_btest.cpptest/unit/UnitGrids/XField4D_library.hbe0464fd63101ae3378d828223f4da87b43ad3851544188414000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduremove duplicate unit grids in favour of handmade ones 2018-12-07 08:13:34 -0500be0464fd63101ae3378d828223f4da87b43ad385remove duplicate unit grids in favour of handmade onesedittest/unit/UnitGrids/XField4D_library_btest.cppedittest/unit/UnitGrids/XField4D_library.cppedittest/unit/Field/XField4D_Local_btest.cppedittest/unit/UnitGrids/XField4D_library.htest/unit/Field/Element/ElementAssociativitySpacetime_Pentatope_btest.cpp8cb2810769847ba1ad6775d7f6fb28b91a2986f81544192236000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduwarning fix 2018-12-07 09:17:16 -05008cb2810769847ba1ad6775d7f6fb28b91a2986f8warning fixedittest/unit/Field/Element/ElementAssociativitySpacetime_Pentatope_btest.cpptest/unit/Field/Element/ElementAssociativitySpacetime_Pentatope_btest.cpp29752ca6845f5ee88694db4662306f411e455f681544192277000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduwarning fix 2018-12-07 09:17:57 -050029752ca6845f5ee88694db4662306f411e455f68warning fixedittest/unit/Field/Element/ElementAssociativitySpacetime_Pentatope_btest.cpptest/unit/UnitGrids/XField4D_24Ptope_X1_1Group_btest.cpptest/unit/UnitGrids/XField4D_24Ptope_X1_1Group.cppa588ebfd84bc71d2111b8bf1897e2ee94e4d83a91544208439000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.edu24Ptope unit grid working, tested and working. 2018-12-07 13:47:19 -0500a588ebfd84bc71d2111b8bf1897e2ee94e4d83a924Ptope unit grid working, tested and working.edittest/unit/UnitGrids/XField4D_24Ptope_X1_1Group_btest.cppedittest/unit/UnitGrids/XField4D_24Ptope_X1_1Group.cppscripts/jenkins/SANS_email.templatea80ac45c2d42fec7802e37bed102717f245cf33b1544219324000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdd duration to each build in Jenkins email. 2018-12-07 16:48:44 -0500a80ac45c2d42fec7802e37bed102717f245cf33bAdd duration to each build in Jenkins email.editscripts/jenkins/SANS_email.templatesrc/Field/XFieldLine_EdgeLocal.cppsrc/Field/XField_Local_Common_Instantiate_3D.cppsrc/Field/XField_Local_Common_Instantiate_1D.cppsrc/Field/XFieldVolume_EdgeLocal.cppsrc/Field/XField_Local_Common_Instantiate_2D.cppsrc/Field/XField_Local_Common.hsrc/Field/XField_ElementLocal_impl.h8f4961e6a82e01dea792ba6a3228655f402ce39c1544468116000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edutweaks and removed a bunch of heap memory allocations 2018-12-10 13:55:16 -05008f4961e6a82e01dea792ba6a3228655f402ce39ctweaks and removed a bunch of heap memory allocationseditsrc/Field/XField_Local_Common_Instantiate_2D.cppeditsrc/Field/XField_ElementLocal_impl.heditsrc/Field/XField_Local_Common_Instantiate_3D.cppeditsrc/Field/XField_Local_Common.heditsrc/Field/XField_Local_Common_Instantiate_1D.cppeditsrc/Field/XFieldVolume_EdgeLocal.cppeditsrc/Field/XFieldLine_EdgeLocal.cppsrc/pde/AnalyticFunction/ScalarFunction2D.cppsrc/pde/AnalyticFunction/ScalarFunction2D.h6c10e2d75453b6e60d9bb53427083413a0be657b1544468322000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduadded options to the quadratic 2018-12-10 13:58:42 -05006c10e2d75453b6e60d9bb53427083413a0be657badded options to the quadraticeditsrc/pde/AnalyticFunction/ScalarFunction2D.cppeditsrc/pde/AnalyticFunction/ScalarFunction2D.htest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cppa928f852d328b4abe5273cbcef3daba0ddb559491544508074000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edumods for running with avro 2018-12-11 01:01:14 -0500a928f852d328b4abe5273cbcef3daba0ddb55949mods for running with avroedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppedittest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cppsrc/Adaptation/MOESS/SolverInterface_L2Project.hsrc/Adaptation/MOESS/SolverInterface.hb7a5c55df6480c47e054736da2edfec1e9240f7e1544510181000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educomment typos 2018-12-11 01:36:21 -0500b7a5c55df6480c47e054736da2edfec1e9240f7ecomment typoseditsrc/Adaptation/MOESS/SolverInterface_L2Project.heditsrc/Adaptation/MOESS/SolverInterface.htest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpp652a13bccccfc9e4a6e7aec18e9fb8ef34c5dd621544510215000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduswitching over to avro 2018-12-11 01:36:55 -0500652a13bccccfc9e4a6e7aec18e9fb8ef34c5dd62switching over to avroedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppCMakeInclude/Checks/CheckAVRO.cmakeCMakeInclude/Builds/parmetis-xyzpart.patchCMakeInclude/Builds/BuildPARMETIS.cmakescripts/jenkins/jenkins_env.shCMakeInclude/Builds/BuildREFINE.cmakeCMakeInclude/Builds/parmetis-CMakeLists.patchsrc/Meshing/avro/CMakeLists.txtCMakeInclude/Builds/BuildAVRO.cmakeCMakeInclude/Builds/parmetis-metis-CMakeLists.patchCMakeInclude/Dependencies.cmakeCMakeInclude/Finds/FindAVRO.cmakeCMakeInclude/Finds/FindREFINE.cmakecd8449d7027fb479512b3e6b57de28bcccd2b9771544568105000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduReworked build of parmetis. refine uses parmetis. added avro build. 2018-12-11 17:41:45 -0500cd8449d7027fb479512b3e6b57de28bcccd2b977Reworked build of parmetis. refine uses parmetis. added avro build.editCMakeInclude/Finds/FindREFINE.cmakeaddCMakeInclude/Builds/parmetis-metis-CMakeLists.patchaddCMakeInclude/Builds/parmetis-CMakeLists.patcheditCMakeInclude/Builds/BuildREFINE.cmakeeditCMakeInclude/Builds/parmetis-xyzpart.patcheditsrc/Meshing/avro/CMakeLists.txtaddCMakeInclude/Checks/CheckAVRO.cmakeeditCMakeInclude/Builds/BuildPARMETIS.cmakeeditCMakeInclude/Dependencies.cmakeeditscripts/jenkins/jenkins_env.shaddCMakeInclude/Builds/BuildAVRO.cmakeeditCMakeInclude/Finds/FindAVRO.cmakesrc/Meshing/refine/MesherInterface_refine.cppsrc/Meshing/refine/MultiScale_metric.cpptest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_avro_toy.cpp23396e0183c41289bd872f03dada128fac3abafb1544587136000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixes for avro and refine 2018-12-11 22:58:56 -050023396e0183c41289bd872f03dada128fac3abafbFixes for avro and refineedittest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_avro_toy.cppeditsrc/Meshing/refine/MesherInterface_refine.cppeditsrc/Meshing/refine/MultiScale_metric.cppsrc/Adaptation/MOESS/SolverInterface_L2Project.h07fa7434e039dd0f6679b95ed65e76cbe3d5dd1c1544587325000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduSuppress warning 2018-12-11 23:02:05 -050007fa7434e039dd0f6679b95ed65e76cbe3d5dd1cSuppress warningeditsrc/Adaptation/MOESS/SolverInterface_L2Project.htest/unit/Meshing/refine/CMakeLists.txttest/unit/Field/Field4D_DG_Pentatope_btest.cpptest/unit/Meshing/EGTess/XFieldDomain_btest.cppe3867ae868109acaefafde3459f0d06b17a822831544617659000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduParallel Field4D test fixes. Give refine more time. 2018-12-12 07:27:39 -0500e3867ae868109acaefafde3459f0d06b17a82283Parallel Field4D test fixes. Give refine more time.edittest/unit/Meshing/refine/CMakeLists.txtedittest/unit/Field/Field4D_DG_Pentatope_btest.cppedittest/unit/Meshing/EGTess/XFieldDomain_btest.cpptest/unit/Field/Field4D_DG_Pentatope_btest.cpp4e46714d682bfb448c1b4e7d85501df42973d3a61544622690000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduRelaxed tolerance for intel 2018-12-12 08:51:30 -05004e46714d682bfb448c1b4e7d85501df42973d3a6Relaxed tolerance for inteledittest/unit/Field/Field4D_DG_Pentatope_btest.cpptest/system/Asymptotic/ErrorOrder_4D_DG_Pentatope_btest.cppc0d2c23179f6d692434feaae8792474dd21355731544628849000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduDon't run ErrorOrder_4D in parallel 2018-12-12 10:34:09 -0500c0d2c23179f6d692434feaae8792474dd2135573Don't run ErrorOrder_4D in paralleledittest/system/Asymptotic/ErrorOrder_4D_DG_Pentatope_btest.cppCMakeInclude/CompilerFlags.cmakeCMakeInclude/Builds/BuildREFINE.cmake5740015ac211e51c0b7942c38a91bf996276eced1544631850000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdated refine build 2018-12-12 11:24:10 -05005740015ac211e51c0b7942c38a91bf996276ecedUpdated refine buildeditCMakeInclude/Builds/BuildREFINE.cmakeeditCMakeInclude/CompilerFlags.cmakeCMakeInclude/Checks/ref_check.c613f8f9c6d04a74e477d93504c5d59b12a2d991b1544635943000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdated refine check 2018-12-12 12:32:23 -0500613f8f9c6d04a74e477d93504c5d59b12a2d991bUpdated refine checkeditCMakeInclude/Checks/ref_check.ctest/unit/UnitGrids/XField4D_2Ptope_X1_1Group_btest.cpptest/unit/UnitGrids/XField4D_1Ptope_X1_1Group_btest.cpptest/unit/UnitGrids/XField4D_24Ptope_X1_1Group_btest.cpp3c897f50563638011ec82dbc6d27003bf228aa9d1544637423000https://acdl.mit.edu/csi/user/cfrontincfrontincfrontin@mit.eduNightly build fixes... plus a stopgap ifdef until the SVDless 4D normal vector is done. 2018-12-12 12:57:03 -05003c897f50563638011ec82dbc6d27003bf228aa9dNightly build fixes... plus a stopgap ifdef until the SVDless 4D normal vector is done.edittest/unit/UnitGrids/XField4D_2Ptope_X1_1Group_btest.cppedittest/unit/UnitGrids/XField4D_24Ptope_X1_1Group_btest.cppedittest/unit/UnitGrids/XField4D_1Ptope_X1_1Group_btest.cpptest/system/Asymptotic/ErrorOrder_4D_DG_Pentatope_btest.cpptest/unit/Meshing/refine/CMakeLists.txttest/system/Asymptotic/CMakeLists.txtsrc/pde/AnalyticFunction/ScalarFunction4D.hd303a72173f965521eaaae210ab7be940edf50821544646713000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduReduce run time of 4D error order check 2018-12-12 15:31:53 -0500d303a72173f965521eaaae210ab7be940edf5082Reduce run time of 4D error order checkedittest/system/Asymptotic/CMakeLists.txtedittest/system/Asymptotic/ErrorOrder_4D_DG_Pentatope_btest.cppeditsrc/pde/AnalyticFunction/ScalarFunction4D.hedittest/unit/Meshing/refine/CMakeLists.txttest/unit/Field/Field4D_DG_Pentatope_btest.cppfaa2049d4ae8b6e88ad8b73bf1e9aa4e89169cec1544654337000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduRelaxed another tolerance 2018-12-12 17:38:57 -0500faa2049d4ae8b6e88ad8b73bf1e9aa4e89169cecRelaxed another toleranceedittest/unit/Field/Field4D_DG_Pentatope_btest.cpptest/unit/Meshing/avro/MesherInterface_avro_btest.cppb230efcc04ea2edefa2bcdfa8b9c8f17f6ae28901544663877000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduRemove files written by avro 2018-12-12 20:17:57 -0500b230efcc04ea2edefa2bcdfa8b9c8f17f6ae2890Remove files written by avroedittest/unit/Meshing/avro/MesherInterface_avro_btest.cppCMakeInclude/CompilerFlags.cmakescripts/jenkins/cmake_jenkins.sh3495cc8647de6f892981f450d0f7584dbd2f4c081544672718000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduDissable refine testing for now 2018-12-12 22:45:18 -05003495cc8647de6f892981f450d0f7584dbd2f4c08Dissable refine testing for noweditCMakeInclude/CompilerFlags.cmakeeditscripts/jenkins/cmake_jenkins.shCMakeInclude/Builds/BuildPARMETIS.cmake72e40e78564e371403e84622cebbda283a3e3daa1544726306000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded memcheck to parmetis build 2018-12-13 13:38:26 -050072e40e78564e371403e84622cebbda283a3e3daaAdded memcheck to parmetis buildeditCMakeInclude/Builds/BuildPARMETIS.cmake.gitignore392080fad078f87a96acb39af20076f4381ccdf61544726378000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduIgnore external parmetis 2018-12-13 13:39:38 -0500392080fad078f87a96acb39af20076f4381ccdf6Ignore external parmetisedit.gitignoretest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cppc40af94a080becd063776dcba132de2100af44d01544799091000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educhanging branch 2018-12-14 09:51:31 -0500c40af94a080becd063776dcba132de2100af44d0changing branchedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cppedittest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cppscripts/valgrind/Ubuntu.suppe5c270b429c815c6146f9ff58289dd56d951103e1544975846000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduGeneralized valgrind suppression 2018-12-16 10:57:26 -0500e5c270b429c815c6146f9ff58289dd56d951103eGeneralized valgrind suppressioneditscripts/valgrind/Ubuntu.supptest/unit/UnitGrids/XField_KuhnFreudenthal.cpp16f40985fdda4333f6659f9173ac1e69bc3e9dc31545069922000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduegads coords must have 3 dimensions even in 2d 2018-12-17 13:05:22 -050016f40985fdda4333f6659f9173ac1e69bc3e9dc3egads coords must have 3 dimensions even in 2dedittest/unit/UnitGrids/XField_KuhnFreudenthal.cpptest/unit/Discretization/Block/CMakeLists.txt4bdfd28713bbd251535227a68bbff8794b1b80ad1545268694000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduSuppressed CMakeLists errors. [TBD] 2018-12-19 20:18:14 -05004bdfd28713bbd251535227a68bbff8794b1b80adSuppressed CMakeLists errors. [TBD]edittest/unit/Discretization/Block/CMakeLists.txttest/unit/PanelMethod/ProjectionToQauxi_IBL_btest.cppsrc/pde/IBL/QauxvInterpret2D.h71792680c61f2d5ef5fbfeb3ecaab4ea1cbaba081545268705000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed panel metod tests 2018-12-19 20:18:25 -050071792680c61f2d5ef5fbfeb3ecaab4ea1cbaba08Fixed panel metod testsedittest/unit/PanelMethod/ProjectionToQauxi_IBL_btest.cppeditsrc/pde/IBL/QauxvInterpret2D.hsrc/Meshing/EGTess/AFLR4.cppscripts/jenkins/Makefile.jenkinsscripts/jenkins/jenkins_env.shCMakeInclude/Checks/CheckREFINE.cmaketest/unit/Meshing/refine/refine3D_btest.cppscripts/jenkins/configure_jenkins.shsrc/Meshing/EGTess/AFLR4.hsrc/Meshing/EGTess/EGTessModel_aflr4.cppscripts/jenkins/SANS_Depend.sh6a9faf294b0672a0130a598501cccf41bbe7f4fa1545341442000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAFLR4 updates and some Jenkins scripts 2018-12-20 16:30:42 -05006a9faf294b0672a0130a598501cccf41bbe7f4faAFLR4 updates and some Jenkins scriptseditsrc/Meshing/EGTess/AFLR4.hedittest/unit/Meshing/refine/refine3D_btest.cppaddscripts/jenkins/SANS_Depend.sheditsrc/Meshing/EGTess/AFLR4.cppeditsrc/Meshing/EGTess/EGTessModel_aflr4.cppeditscripts/jenkins/configure_jenkins.sheditscripts/jenkins/Makefile.jenkinseditscripts/jenkins/jenkins_env.sheditCMakeInclude/Checks/CheckREFINE.cmakeCMakeInclude/Dependencies.cmake84def710f32f97668f889f72b27eff96cad229551545421520000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduLink tetgen before avro 2018-12-21 14:45:20 -050084def710f32f97668f889f72b27eff96cad22955Link tetgen before avroeditCMakeInclude/Dependencies.cmakesrc/Field/XFieldSpacetime_ElementLocal.cppsrc/Field/XFieldSpacetime_EdgeLocal.cppsrc/Field/XField_Local_Common_Instantiate_4D.cpptest/unit/Field/XField4D_ElementLocal_btest.cppa49ac2e5ddf048417b0a916ed7d501c99959bac81545426620000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduinstantation of elementlocal version of local splits for 4d...unit test will fail because the result is different than savi's convention 2018-12-21 16:10:20 -0500a49ac2e5ddf048417b0a916ed7d501c99959bac8instantation of elementlocal version of local splits for 4d...unit test will fail because the result is different than savi's conventionaddsrc/Field/XFieldSpacetime_ElementLocal.cppaddtest/unit/Field/XField4D_ElementLocal_btest.cppaddsrc/Field/XFieldSpacetime_EdgeLocal.cppaddsrc/Field/XField_Local_Common_Instantiate_4D.cppsrc/Field/XField.hsrc/Field/Partition/XField_Lagrange.cppsrc/BasisFunction/BasisFunction_RefElement_Split.cppsrc/Field/XField_Local_Common.htest/unit/Field/CMakeLists.txtsrc/Field/XField_EdgeLocal.hsrc/Field/Partition/LagrangeElementGroup.cppsrc/Field/Partition/LagrangeElementGroup.hsrc/Field/XField_impl.hsrc/BasisFunction/BasisFunction_RefElement_Split.hsrc/Field/Partition/XField_Lagrange.hsrc/Field/XField_EdgeLocal_impl.hsrc/Field/CMakeLists.txtsrc/Field/XField_ElementLocal_impl.h2374219e4496a688af2222a9b10931aef9c6bedc1545426654000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edumissing definitions for elementlocal & edgelocal 2018-12-21 16:10:54 -05002374219e4496a688af2222a9b10931aef9c6bedcmissing definitions for elementlocal & edgelocaleditsrc/Field/CMakeLists.txtedittest/unit/Field/CMakeLists.txteditsrc/BasisFunction/BasisFunction_RefElement_Split.cppeditsrc/Field/XField.heditsrc/Field/XField_EdgeLocal.heditsrc/Field/Partition/LagrangeElementGroup.cppeditsrc/Field/XField_ElementLocal_impl.heditsrc/Field/Partition/XField_Lagrange.heditsrc/Field/XField_EdgeLocal_impl.heditsrc/Field/XField_impl.heditsrc/Field/XField_Local_Common.heditsrc/BasisFunction/BasisFunction_RefElement_Split.heditsrc/Field/Partition/LagrangeElementGroup.heditsrc/Field/Partition/XField_Lagrange.cppsrc/Field/XFieldSpacetime_Local_Split.cppsrc/Field/XFieldSpacetime_Local_Split.hsrc/Field/XFieldSpacetime_Local_Split_Linear_Edge.htest/unit/Field/XField4D_Local_Split_EdgeSplits_btest.cppsrc/Field/XFieldSpacetime_Local_Split_Linear_Edge.cpptest/unit/Field/XField4D_Local_Split_Linear_EdgeSplits_btest.cppc5ce3c43d74b56336e1d7123edcca30f790e72361545426703000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edusome instantiations of savi's method for doing local splits 2018-12-21 16:11:43 -0500c5ce3c43d74b56336e1d7123edcca30f790e7236some instantiations of savi's method for doing local splitsaddsrc/Field/XFieldSpacetime_Local_Split.cppaddsrc/Field/XFieldSpacetime_Local_Split.haddtest/unit/Field/XField4D_Local_Split_Linear_EdgeSplits_btest.cppaddsrc/Field/XFieldSpacetime_Local_Split_Linear_Edge.haddsrc/Field/XFieldSpacetime_Local_Split_Linear_Edge.cppaddtest/unit/Field/XField4D_Local_Split_EdgeSplits_btest.cpptest/unit/Field/Local/CMakeLists.txtsrc/Field/Local/XField_LocalPatch.htest/unit/Field/Local/XField_LocalPatch_Triangle_btest.cppsrc/Field/Local/XField_LocalPatch.cpptest/unit/Field/Local/XField_LocalPatch_Pentatope_btest.cpptest/unit/Field/Local/XField_LocalPatch_Tet_btest.cpp97b60b2952c79debc77beae2cf28fc91267faa5b1545426759000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduxfield_lagrange method of doing local splits...still debugging...will fix later... 2018-12-21 16:12:39 -050097b60b2952c79debc77beae2cf28fc91267faa5bxfield_lagrange method of doing local splits...still debugging...will fix later...addsrc/Field/Local/XField_LocalPatch.cppaddsrc/Field/Local/XField_LocalPatch.haddtest/unit/Field/Local/CMakeLists.txtaddtest/unit/Field/Local/XField_LocalPatch_Pentatope_btest.cppaddtest/unit/Field/Local/XField_LocalPatch_Triangle_btest.cppaddtest/unit/Field/Local/XField_LocalPatch_Tet_btest.cppsrc/pde/IBL/SpaldingLawModified.hsrc/pde/IBL/VarInterpret2D.htest/unit/pde/IBL/VarInterpret2D_btest.cppdc3cfd8ac904d3a0f04df6a2cd722e977ec8c1fb1545707550000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactoring. Patched unit tests 2018-12-24 22:12:30 -0500dc3cfd8ac904d3a0f04df6a2cd722e977ec8c1fbRefactoring. Patched unit testseditsrc/pde/IBL/SpaldingLawModified.heditsrc/pde/IBL/VarInterpret2D.hedittest/unit/pde/IBL/VarInterpret2D_btest.cppsrc/pde/IBL/QauxvInterpret2D.htest/unit/pde/IBL/QauxvInterpret2D_btest.cpp259db89f1bee6ccabb55594700e1c472ceacb33a1545709222000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduMore unit tests 2018-12-24 22:40:22 -0500259db89f1bee6ccabb55594700e1c472ceacb33aMore unit testsaddtest/unit/pde/IBL/QauxvInterpret2D_btest.cppeditsrc/pde/IBL/QauxvInterpret2D.htest/unit/pde/IBL/QauxvInterpret2D_btest.cpped100c1e283e23b59f48226c9cf3cf3422aaa4e41545746014000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduadded unit tests 2018-12-25 08:53:34 -0500ed100c1e283e23b59f48226c9cf3cf3422aaa4e4added unit testsedittest/unit/pde/IBL/QauxvInterpret2D_btest.cpptest/unit/pde/IBL/ElementProjectionIBLoutput_L2_btest.cpptest/unit/pde/IBL/SetIBLoutputCellGroup_btest.cppsrc/pde/IBL/PDEIBL2D.h8868aa042aac26b368904fd2475f3be80485f2aa1545747649000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed unit tests 2018-12-25 09:20:49 -05008868aa042aac26b368904fd2475f3be80485f2aaFixed unit testseditsrc/pde/IBL/PDEIBL2D.hedittest/unit/pde/IBL/SetIBLoutputCellGroup_btest.cppedittest/unit/pde/IBL/ElementProjectionIBLoutput_L2_btest.cpptest/unit/pde/IBL/BCIBL2D_btest.cpptest/unit/pde/IBL/PDEIBLUniField2D_btest.cppsrc/pde/IBL/FluidModels.htest/unit/pde/IBL/FluidModels_btest.cpptest/unit/pde/IBL/PDEIBL2D_btest.cppab3f80f945e99bb54c01ecd90e94908d68c517a61545755594000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed IBL unit tests 2018-12-25 11:33:14 -0500ab3f80f945e99bb54c01ecd90e94908d68c517a6Fixed IBL unit testsedittest/unit/pde/IBL/PDEIBL2D_btest.cppeditsrc/pde/IBL/FluidModels.hedittest/unit/pde/IBL/FluidModels_btest.cppedittest/unit/pde/IBL/PDEIBLUniField2D_btest.cppedittest/unit/pde/IBL/BCIBL2D_btest.cppsrc/pde/IBL/FluidModels.htest/unit/pde/IBL/FluidModels_btest.cppef2d56d872a19bcdc4099f1af959d806ce16e1751545780060000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded unit test. Turned off unused methods. 2018-12-25 18:21:00 -0500ef2d56d872a19bcdc4099f1af959d806ce16e175Added unit test. Turned off unused methods.editsrc/pde/IBL/FluidModels.hedittest/unit/pde/IBL/FluidModels_btest.cpptest/unit/CMakeLists.txt9d48f4f28f9588ccec5dde5656464473693520e51545788685000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed a bug in CMakeLists: use of out-of-scope variable 2018-12-25 20:44:45 -05009d48f4f28f9588ccec5dde5656464473693520e5Fixed a bug in CMakeLists: use of out-of-scope variableedittest/unit/CMakeLists.txttest/unit/CMakeLists.txttest/system/CMakeLists.txt42cda813f6576e06032a1f43a01562d2bdd496731545789910000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed a bug in cmake files that only appear when building with Xcode 2018-12-25 21:05:10 -050042cda813f6576e06032a1f43a01562d2bdd49673Fixed a bug in cmake files that only appear when building with Xcodeedittest/unit/CMakeLists.txtedittest/system/CMakeLists.txttest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBLUniField_Panel_btest_outdated.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HubtraceHDGAdvIBL_CutCellForcedTransition_Panel_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HDGAdvIBL_Panel_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HubtraceHDGAdvIBL_CutCellNaturalTransition_Panel_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBLUniField_Panel_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block2x2_DGBR2_Line_Euler1DSensor_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_IBL_Panel_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBLUniField_Panel_btest.cppsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective.htest/unit/Discretization/jacobianPingTest_btest.htest/unit/Discretization/Block/AlgebraicEquationSet_Block2x2_DGBR2_BuckleyLeverett_ArtificialViscosity_ST_btest.cppsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_CutcellTransitionIBL.hsrc/PanelMethod/AlgebraicEquationSet_ProjectToQauxi.hsrc/Discretization/Galerkin/IntegrandCell_ProjectFunction.hsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.htest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBL_Panel_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBL_Panel_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBLUniField_Panel_btest_outdated.cpp3ceb0ffa36d94c5ae762af647ec016968d5384b61545834732000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactored ping test input array type. Fixed IBL-related 4x4 block system ping tests. Added missing MPI-related method definitions for pure virtural methods 2018-12-26 09:32:12 -05003ceb0ffa36d94c5ae762af647ec016968d5384b6Refactored ping test input array type. Fixed IBL-related 4x4 block system ping tests. Added missing MPI-related method definitions for pure virtural methodsedittest/unit/Discretization/jacobianPingTest_btest.haddtest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBLUniField_Panel_btest_outdated.cppdeletetest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HubtraceHDGAdvIBL_CutCellForcedTransition_Panel_btest.cppeditsrc/Discretization/Galerkin/IntegrandCell_ProjectFunction.hedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBL_Panel_btest.cppedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HDGAdvIBL_Panel_btest.cppeditsrc/PanelMethod/AlgebraicEquationSet_ProjectToQauxi.heditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective.hedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBL_Panel_btest.cppedittest/unit/Discretization/Block/AlgebraicEquationSet_Block2x2_DGBR2_Line_Euler1DSensor_btest.cppeditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.hedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_IBL_Panel_btest.cppedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HubtraceHDGAdvIBL_CutCellNaturalTransition_Panel_btest.cppedittest/unit/Discretization/Block/AlgebraicEquationSet_Block2x2_DGBR2_BuckleyLeverett_ArtificialViscosity_ST_btest.cppeditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_CutcellTransitionIBL.haddtest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBLUniField_Panel_btest_outdated.cppdeletetest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBLUniField_Panel_btest.cppdeletetest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBLUniField_Panel_btest.cppsrc/Discretization/Galerkin/JacobianInteriorTrace_Galerkin.hsrc/Discretization/Galerkin/ResidualInteriorTrace_Galerkin.h5f47933a74ebc48d7772f65f48824b1a06c536b41545838636000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRelocated code into SANS_MPI macros; otherwise, errors are raised about "member access to incomplete type" 2018-12-26 10:37:16 -05005f47933a74ebc48d7772f65f48824b1a06c536b4Relocated code into SANS_MPI macros; otherwise, errors are raised about "member access to incomplete type"editsrc/Discretization/Galerkin/JacobianInteriorTrace_Galerkin.heditsrc/Discretization/Galerkin/ResidualInteriorTrace_Galerkin.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_TwoLayerNewton_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_CapturedTransition_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_LineSearchNewton_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_LamiBL_TurbWake_btest.cpp6f955a2bf09e65da97afa9a014a9a6c6b16b9aaf1545838645000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduVerified/fixed/cleaned IBL system tests with transition (full upwind). 2018-12-26 10:37:25 -05006f955a2bf09e65da97afa9a014a9a6c6b16b9aafVerified/fixed/cleaned IBL system tests with transition (full upwind).edittest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_LamiBL_TurbWake_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_TwoLayerNewton_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_LineSearchNewton_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_CapturedTransition_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cppdeletetest/system/CodeConsistency/Solve2D_Coupled4x4_HDGAdv_IBL_Panel_NACA0004_IntraCellNaturalTransitionBL_TurbWake_btest.cpptest/system/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_NACA0004_LamiBL_btest.cppbf73eea3a565ab536b7a78b891da74d01c3009871545839419000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed duplicate naming of boost test suite 2018-12-26 10:50:19 -0500bf73eea3a565ab536b7a78b891da74d01c300987Fixed duplicate naming of boost test suiteedittest/system/CodeConsistency/Solve2D_Uncoupled_HDGAdvectiveIBL_NACA0004_LamiBL_btest.cpptest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBLUniField_NACA0004_LamiBL_btest.cpp30ff2a7f74a2eb5613af7b59a680df831bf6bed11545839435000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRelaxed pyrite tolerance 2018-12-26 10:50:35 -050030ff2a7f74a2eb5613af7b59a680df831bf6bed1Relaxed pyrite toleranceedittest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBLUniField_NACA0004_LamiBL_btest.cpptest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_forcedTransition0p8074822_naca0004_ne64_p1_Test_FittedTransition_FullUpwind.txttest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_forcedTransition0p8074822_naca0004_ne64_p1_Test_FittedTransition_LFflux.txt73324348ac28811dd98985b73428472ff648df5d1545840280000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduUpdated forced-transition pyrite files after the bug fix in commit b30121ee5531d91e84aac94fbdab6462f458f4f8 2018-12-26 11:04:40 -050073324348ac28811dd98985b73428472ff648df5dUpdated forced-transition pyrite files after the bug fix in commit b30121ee5531d91e84aac94fbdab6462f458f4f8edittest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_forcedTransition0p8074822_naca0004_ne64_p1_Test_FittedTransition_LFflux.txtedittest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBL_Panel_forcedTransition0p8074822_naca0004_ne64_p1_Test_FittedTransition_FullUpwind.txttest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_Forced_btest.cpp04ddf23776dadc4d60018ffbd0d85a3fc18a96df1545840476000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduTurned off file dump 2018-12-26 11:07:56 -050004ddf23776dadc4d60018ffbd0d85a3fc18a96dfTurned off file dumpedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_Forced_btest.cpptest/fenv.h8864949c7bdd7c06387f59cfc8338e1dfbc696111545841092000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed formatting 2018-12-26 11:18:12 -05008864949c7bdd7c06387f59cfc8338e1dfbc69611Fixed formattingedittest/fenv.htest/unit/pde/IBL/VarInterpret2D_btest.cpp4cb6955b8412155b3ca9758e32b1e8a7eb580b091545841258000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed empty traling line 2018-12-26 11:20:58 -05004cb6955b8412155b3ca9758e32b1e8a7eb580b09Fixed empty traling lineedittest/unit/pde/IBL/VarInterpret2D_btest.cpptest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Line_IBL_airfoilOnly_btest.cpptest/unit/Discretization/DG/AlgebraicEquationSet_DGAdvective_Line_IBL_airfoilOnly_btest.cpptest/unit/Discretization/HDG/AlgebraicEquationSet_Hubtrace_HDGAdvective_IBL_btest.cppd957824748b219044bcbf86fb11d5361429d96e51545879904000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed DG and HDG AES tests for uncoupled IBL 2018-12-26 22:05:04 -0500d957824748b219044bcbf86fb11d5361429d96e5Fixed DG and HDG AES tests for uncoupled IBLedittest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Line_IBL_airfoilOnly_btest.cppedittest/unit/Discretization/DG/AlgebraicEquationSet_DGAdvective_Line_IBL_airfoilOnly_btest.cppedittest/unit/Discretization/HDG/AlgebraicEquationSet_Hubtrace_HDGAdvective_IBL_btest.cpptest/unit/Discretization/HDG/AlgebraicEquationSet_Hubtrace_HDGAdvective_IBL_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBL_Panel_btest.cppdb93e2afaf214cb09d0780085ca85a56fd3908641545882098000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed formatting 2018-12-26 22:41:38 -0500db93e2afaf214cb09d0780085ca85a56fd390864Fixed formattingedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBL_Panel_btest.cppedittest/unit/Discretization/HDG/AlgebraicEquationSet_Hubtrace_HDGAdvective_IBL_btest.cppsrc/Discretization/HDG/JacobianBoundaryTrace_Dispatch_HDG.hsrc/Discretization/HDG/JacobianBoundaryCell_HDG_AuxiliaryVariable.hsrc/Discretization/HDG/ResidualCell_HDG.hsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.hsrc/Discretization/HDG/JacobianBoundaryTrace_HDG.hsrc/Discretization/HDG/ResidualBoundaryTrace_Dispatch_HDG.h4d98a015d00f4d1162069ac9a1373ec69c3ee1491545883572000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduReverted changes to (viscous) HDG stuff: those abandoned changes treated qfld and afld as a single bundle field 2018-12-26 23:06:12 -05004d98a015d00f4d1162069ac9a1373ec69c3ee149Reverted changes to (viscous) HDG stuff: those abandoned changes treated qfld and afld as a single bundle fieldeditsrc/Discretization/HDG/JacobianBoundaryTrace_HDG.heditsrc/Discretization/HDG/JacobianBoundaryTrace_Dispatch_HDG.heditsrc/Discretization/HDG/JacobianBoundaryCell_HDG_AuxiliaryVariable.heditsrc/Discretization/HDG/ResidualCell_HDG.heditsrc/Discretization/HDG/ResidualBoundaryTrace_Dispatch_HDG.heditsrc/Discretization/HDG/AlgebraicEquationSet_HDG_impl.htest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Advection_btest.cpp36a3e1f8db4e549550e452abbb2ca79da1a877181545884077000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduUpdate AlgebraicEquationSet_HDGAdvective_Advection_btest.cpp Turned off the test temporarily --> to be fixed 2018-12-26 23:14:37 -050036a3e1f8db4e549550e452abbb2ca79da1a87718Update AlgebraicEquationSet_HDGAdvective_Advection_btest.cppedittest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Advection_btest.cpptest/unit/PanelMethod/XfoilPanelEquationSet_btest.cpptest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Advection_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_IBL_Panel_btest.cpp59299dfacae8206bd678093b49e044f678a7979e1545885250000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed one more test affected by ping test refactoring. Fixed formatting and screen output 2018-12-26 23:34:10 -050059299dfacae8206bd678093b49e044f678a7979eFixed one more test affected by ping test refactoring. Fixed formatting and screen outputedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_IBL_Panel_btest.cppedittest/unit/PanelMethod/XfoilPanelEquationSet_btest.cppedittest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Advection_btest.cpptest/system/AnalyticSolve/AnalyticSolve2D_DGAdvective_IBL_StagnationFlow_LamiBL_btest.cppc3d00dbc9f97bd67f799829566cb53feb0305d6e1545885746000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed another system test affected by IBL Qauxv interpreter refactoring 2018-12-26 23:42:26 -0500c3d00dbc9f97bd67f799829566cb53feb0305d6eFixed another system test affected by IBL Qauxv interpreter refactoringedittest/system/AnalyticSolve/AnalyticSolve2D_DGAdvective_IBL_StagnationFlow_LamiBL_btest.cpptest/system/Asymptotic/ErrorOrder_1D_HDGAdvective_Advection_btest.cpp5983e3e32ac3382601f0aba1855f483e276496821545886794000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduUpdate ErrorOrder_1D_HDGAdvective_Advection_btest.cpp Turned off a system test temporarily --> to be fixed later 2018-12-26 23:59:54 -05005983e3e32ac3382601f0aba1855f483e27649682Update ErrorOrder_1D_HDGAdvective_Advection_btest.cppedittest/system/Asymptotic/ErrorOrder_1D_HDGAdvective_Advection_btest.cppsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_4x4_Instantiate.cppsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.h288727892baa3434a7d6c086acee806dd843433e1545923734000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed warning and missing instantiation 2018-12-27 10:15:34 -0500288727892baa3434a7d6c086acee806dd843433eFixed warning and missing instantiationeditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_4x4_Instantiate.cppeditsrc/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_impl.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_4x4_Instantiate.cpp3d336240b1c63c1abfe72a21d38fa09b27ffd4df1545924344000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded an instantiation just for completeness, although it is no longer used 2018-12-27 10:25:44 -05003d336240b1c63c1abfe72a21d38fa09b27ffd4dfAdded an instantiation just for completeness, although it is no longer usededitsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_MatrixBlock_4x4_Instantiate.cpptest/sandbox/Solve2D_Uncoupled_DGAdvective_IBL_toy.cpptest/sandbox/Solve2D_Uncoupled_DGAdvective_IBL_p0_toy.cpp810f4bd4fad8ba3b2de969746989dcb0c782a0291545925229000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduCleaned sandbox cases 2018-12-27 10:40:29 -0500810f4bd4fad8ba3b2de969746989dcb0c782a029Cleaned sandbox casesedittest/sandbox/Solve2D_Uncoupled_DGAdvective_IBL_toy.cppdeletetest/sandbox/Solve2D_Uncoupled_DGAdvective_IBL_p0_toy.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HDGAdvIBL_Panel_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HubtraceHDGAdvIBL_CutCellNaturalTransition_Panel_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_IBL_Panel_btest.cpp693f26495b03afc1b18c756d3bd2835671784de61545926367000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edurelaxed tolerances for clang_release 2018-12-27 10:59:27 -0500693f26495b03afc1b18c756d3bd2835671784de6relaxed tolerances for clang_releaseedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HubtraceHDGAdvIBL_CutCellNaturalTransition_Panel_btest.cppedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_IBL_Panel_btest.cppedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HDGAdvIBL_Panel_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_LineSearchNewton_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_CapturedTransition_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_TwoLayerNewton_btest.cppbfb46a16cecaf81ff2fb2e4cd48e091a5c1a76e11545927204000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduSuppressed output 2018-12-27 11:13:24 -0500bfb46a16cecaf81ff2fb2e4cd48e091a5c1a76e1Suppressed outputedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_CapturedTransition_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_LineSearchNewton_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_TwoLayerNewton_btest.cpptest/unit/Discretization/HDG/CMakeLists.txttest/unit/Discretization/Block/CMakeLists.txttest/system/Asymptotic/CMakeLists.txt3e943c62719235ebaa82229cc6537c9839401d451545927356000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed bugs in CMakeLists 2018-12-27 11:15:56 -05003e943c62719235ebaa82229cc6537c9839401d45Fixed bugs in CMakeListsedittest/unit/Discretization/Block/CMakeLists.txtedittest/unit/Discretization/HDG/CMakeLists.txtedittest/system/Asymptotic/CMakeLists.txttest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Advection_btest.cpptest/system/Asymptotic/ErrorOrder_1D_HDGAdvective_Advection_btest.cppa3db76862e142fbfa249a204b687efa3d229fc361545931897000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed HDG advection tests 2018-12-27 12:31:37 -0500a3db76862e142fbfa249a204b687efa3d229fc36Fixed HDG advection testsedittest/system/Asymptotic/ErrorOrder_1D_HDGAdvective_Advection_btest.cppedittest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Advection_btest.cpptest/system/Asymptotic/ErrorOrder_1D_HDG_Advection_btest.cpp73cee225c44a45f7a8cbeddffaf303e6e4023b131545932997000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRemoved the pure advection test case using (viscous) HDG machinery 2018-12-27 12:49:57 -050073cee225c44a45f7a8cbeddffaf303e6e4023b13Removed the pure advection test case using (viscous) HDG machinerydeletetest/system/Asymptotic/ErrorOrder_1D_HDG_Advection_btest.cppsrc/NonLinearSolver/LineUpdate/HalvingSearchLineUpdate_impl.htest/unit/NonLinearSolver/HalvingSearchLineUpdate_btest.cppsrc/NonLinearSolver/LineUpdate/HalvingSearchLineUpdate.hc79c753eb1196f7cece2d8a5a137aa1d94aaf2601545952199000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactored halving line search and fixed unit tests 2018-12-27 18:09:59 -0500c79c753eb1196f7cece2d8a5a137aa1d94aaf260Refactored halving line search and fixed unit testseditsrc/NonLinearSolver/LineUpdate/HalvingSearchLineUpdate_impl.hedittest/unit/NonLinearSolver/HalvingSearchLineUpdate_btest.cppeditsrc/NonLinearSolver/LineUpdate/HalvingSearchLineUpdate.htest/unit/Discretization/DG/AlgebraicEquationSet_DGAdvective_Line_IBL_airfoilOnly_btest.cpptest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Line_IBL_airfoilOnly_btest.cpp9f119a3a5484cd20e84d16c9685408bb3495574c1545957324000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed memory errors 2018-12-27 19:35:24 -05009f119a3a5484cd20e84d16c9685408bb3495574cFixed memory errorsedittest/unit/Discretization/DG/AlgebraicEquationSet_DGAdvective_Line_IBL_airfoilOnly_btest.cppedittest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Line_IBL_airfoilOnly_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBL_Panel_btest.cppdb0e0087b5b20c735b48920da1981346dfaa6da31545967356000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRelaxed tolerance for intel 2018-12-27 22:22:36 -0500db0e0087b5b20c735b48920da1981346dfaa6da3Relaxed tolerance for inteledittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBL_Panel_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_LineSearchNewton_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_TwoLayerNewton_btest.cpp9a0e84b33bed1ea04b9517a56ee85031d68b82e31545967863000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edurelaxed tolerances for intel18 2018-12-27 22:31:03 -05009a0e84b33bed1ea04b9517a56ee85031d68b82e3relaxed tolerances for intel18edittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_LineSearchNewton_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_TwoLayerNewton_btest.cpptest/unit/Discretization/Block/CMakeLists.txt13682181d4f33448762376a4af330f5f38efc1dc1545999137000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRelaxed timeout limits 2018-12-28 07:12:17 -050013682181d4f33448762376a4af330f5f38efc1dcRelaxed timeout limitsedittest/unit/Discretization/Block/CMakeLists.txttest/unit/Discretization/Block/CMakeLists.txttest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HubtraceHDGAdvIBL_CutCellNaturalTransition_Panel_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBL_Panel_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBL_Panel_btest.cpp7ef42f4e8a6894b24eb24a580214d393f13ed7e11546006092000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduSpeed up unit tests in response to Jenkins timeout 2018-12-28 09:08:12 -05007ef42f4e8a6894b24eb24a580214d393f13ed7e1Speed up unit tests in response to Jenkins timeoutedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HubtraceHDGAdvIBL_CutCellNaturalTransition_Panel_btest.cppedittest/unit/Discretization/Block/CMakeLists.txtedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBL_Panel_btest.cppedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBL_Panel_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HubtraceHDGAdvIBL_CutCellNaturalTransition_Panel_btest.cppfe8e917382161cd95cf8b25bd7321820d977ef0f1546006596000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed typo 2018-12-28 09:16:36 -0500fe8e917382161cd95cf8b25bd7321820d977ef0fFixed typoedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HubtraceHDGAdvIBL_CutCellNaturalTransition_Panel_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBL_Panel_btest.cppc0ad37a4a0f9dca2fa9fcb1467b2ab3f281401b51546010032000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRelaxed tolerance for gnu48 2018-12-28 10:13:52 -0500c0ad37a4a0f9dca2fa9fcb1467b2ab3f281401b5Relaxed tolerance for gnu48edittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellNaturalTransitionIBL_Panel_btest.cpptest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HDGAdvIBL_Panel_btest.cpptest/unit/Discretization/Block/CMakeLists.txttest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_IBL_Panel_btest.cppb454405f165d71f3f6148314406b6c91d5a892a21546018193000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduTried to fix timeout on Jenkins testing (coverage_clang reynolds) 2018-12-28 12:29:53 -0500b454405f165d71f3f6148314406b6c91d5a892a2Tried to fix timeout on Jenkins testing (coverage_clang reynolds)edittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_IBL_Panel_btest.cppedittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_HDGAdvIBL_Panel_btest.cppedittest/unit/Discretization/Block/CMakeLists.txttest/unit/Discretization/HDG/CMakeLists.txttest/unit/Discretization/Block/CMakeLists.txttest/system/Asymptotic/CMakeLists.txt028c9f2d90e4cf8c4f213f0f2239eaa96919bd491546026601000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduReverted CMakeLists to see if TIMEOUT is set properly this time on Jenkins 2018-12-28 14:50:01 -0500028c9f2d90e4cf8c4f213f0f2239eaa96919bd49Reverted CMakeLists to see if TIMEOUT is set properly this time on Jenkinsedittest/unit/Discretization/Block/CMakeLists.txtedittest/system/Asymptotic/CMakeLists.txtedittest/unit/Discretization/HDG/CMakeLists.txtsrc/Discretization/Galerkin/ResidualBoundaryTrace_mitLG_Galerkin.hsrc/Discretization/HDG/ResidualBoundaryTrace_HDGAdvective.hsrc/Discretization/Galerkin/ResidualBoundaryTrace_Dirichlet_mitLG_Galerkin.h0f6ac1e43ac20770efc8b0a2a3e9c15d5b2f00e01546038469000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduminor refactoring 2018-12-28 18:07:49 -05000f6ac1e43ac20770efc8b0a2a3e9c15d5b2f00e0minor refactoringeditsrc/Discretization/Galerkin/ResidualBoundaryTrace_mitLG_Galerkin.heditsrc/Discretization/HDG/ResidualBoundaryTrace_HDGAdvective.heditsrc/Discretization/Galerkin/ResidualBoundaryTrace_Dirichlet_mitLG_Galerkin.htest/unit/Discretization/HDG/CMakeLists.txttest/unit/Discretization/Block/CMakeLists.txttest/system/Asymptotic/CMakeLists.txte5643bf0daeea303cf0afd498d98cd98b189dabc1546039256000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactored CMakeLists for Xcode build 2018-12-28 18:20:56 -0500e5643bf0daeea303cf0afd498d98cd98b189dabcRefactored CMakeLists for Xcode buildedittest/unit/Discretization/HDG/CMakeLists.txtedittest/unit/Discretization/Block/CMakeLists.txtedittest/system/Asymptotic/CMakeLists.txtsrc/NonLinearSolver/NewtonSolver_impl.hdf67e96aa82129a4f4a224ebdba2f3cde50b50291546055663000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactored Newton solver 2018-12-28 22:54:23 -0500df67e96aa82129a4f4a224ebdba2f3cde50b5029Refactored Newton solvereditsrc/NonLinearSolver/NewtonSolver_impl.hsrc/NonLinearSolver/NewtonSolver_impl.h1b21c1a1154b21c7bb6ce9f4790bd0480327c66c1546089150000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduMinor fix 2018-12-29 08:12:30 -05001b21c1a1154b21c7bb6ce9f4790bd0480327c66cMinor fixeditsrc/NonLinearSolver/NewtonSolver_impl.hsrc/NonLinearSolver/NewtonSolver_impl.h4951cb72814beec785f16bdd6f0573ceea50d7531546091998000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed warnings 2018-12-29 08:59:58 -05004951cb72814beec785f16bdd6f0573ceea50d753Fixed warningseditsrc/NonLinearSolver/NewtonSolver_impl.htest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_NACA0004_LamiBL_btest.cppsrc/pde/IBL/PDEIBL2D.hsrc/Discretization/UpdateFraction/UpdateFractionCell.h6ae5fee7aa15a8db9e4c10b922acdf0cb758a3231546137799000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded IBL max update fraction 2018-12-29 21:43:19 -05006ae5fee7aa15a8db9e4c10b922acdf0cb758a323Added IBL max update fractionedittest/system/CodeConsistency/Solve2D_Uncoupled_DGAdvectiveIBL_NACA0004_LamiBL_btest.cppeditsrc/pde/IBL/PDEIBL2D.heditsrc/Discretization/UpdateFraction/UpdateFractionCell.hsrc/Discretization/Galerkin/AlgebraicEquationSet_Project.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_TwoLayerNewton_btest.cppsrc/Discretization/DG/AlgebraicEquationSet_TransitionIBL.hsrc/Discretization/Block/AlgebraicEquationSet_Block4x4_impl.hsrc/PanelMethod/XfoilPanelEquationSet.hsrc/Discretization/Block/AlgebraicEquationSet_Block4x4.hsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective_impl.h2865578197ac529142b3f028ecce255f490ac6991546204535000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduEnabled under-relaxed Newton update for coupled 4x4 block system of IBL with free transition. Added updateFraction to AES of projection, panel method, cut-cell transition IBL, and 4x4 block system 2018-12-30 16:15:35 -05002865578197ac529142b3f028ecce255f490ac699Enabled under-relaxed Newton update for coupled 4x4 block system of IBL with free transition.editsrc/PanelMethod/XfoilPanelEquationSet.heditsrc/Discretization/Galerkin/AlgebraicEquationSet_Project.heditsrc/Discretization/Block/AlgebraicEquationSet_Block4x4.heditsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective_impl.heditsrc/Discretization/DG/AlgebraicEquationSet_TransitionIBL.hedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_TwoLayerNewton_btest.cppeditsrc/Discretization/Block/AlgebraicEquationSet_Block4x4_impl.hsrc/Meshing/EGTess/XFieldDomain_impl.hCMakeInclude/Checks/CheckAVRO.cmakesrc/Meshing/EGADS/EGModel.hsrc/Field/XField.hCMakeInclude/Builds/BuildREFINE.cmaketest/system/Asymptotic/Adjoint2D_DGBR2_Triangle_AD_btest.cpptest/unit/UnitGrids/CMakeLists.txttest/sandbox/Adapt3D_Mesh_Optimizer_toy.cpptest/unit/Meshing/avro/XField_avro_btest.cppCMakeInclude/Builds/BuildPARMETIS.cmaketest/sandbox/Adapt2D_Mesh_Optimizer_toy.cppsrc/Meshing/avro/XField_avro.cpptest/sandbox/Adapt3D_CG_AD_L2_MOESS_toy.cppsrc/Meshing/avro/MesherInterface_avro.cppsrc/Meshing/EGTess/XFieldDomain.cpptest/unit/Meshing/avro/MesherInterface_avro_btest.cpptest/sandbox/Adapt3D_DGBR2_AD_HemisphereCylinder_toy.cpptest/unit/Meshing/EGTess/XFieldDomain_btest.cppCMakeInclude/Builds/BuildAVRO.cmakesrc/Meshing/EGTess/XFieldDomain.hsrc/Meshing/avro/MesherInterface_avro.htest/sandbox/Adapt3D_CG_AD_L2_MultiScale_toy.cpptest/sandbox/Adapt3D_L2Project_MOESS_toy.cppsrc/Meshing/EGADS/EGModel.cpptest/sandbox/Adapt3D_DG_AD_L2_MOESS_toy.cpptest/sandbox/CMakeLists.txttest/system/CMakeLists.txtsrc/Adaptation/MeshAdapter.cppsrc/Adaptation/MeshAdapter.hCMakeInclude/HeaderCompileCheck.cmakesrc/Meshing/avro/XField_avro_impl.htest/unit/CMakeLists.txttest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppsrc/Meshing/avro/XField_avro.hsrc/Adaptation/callMesher.hsrc/Adaptation/callMesher2D.cpptest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppsrc/Meshing/EGTess/CMakeLists.txtCMakeInclude/Builds/parmetis-CMakeLists.patchsrc/Adaptation/callMesher3D.cppsrc/Meshing/avro/CMakeLists.txttest/sandbox/Adapt4D_Mesh_Optimizer_toy.cpptest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_avro_toy.cpptest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppCMakeInclude/Finds/FindAVRO.cmakeCMakeInclude/Dependencies.cmaked8e0ba9b657ce92ef6657ef8d812d52a6884434e1546224180000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduRefactor of avro XField interface 2018-12-30 21:43:00 -0500d8e0ba9b657ce92ef6657ef8d812d52a6884434eRefactor of avro XField interfaceeditsrc/Meshing/avro/MesherInterface_avro.cppedittest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppaddtest/unit/Meshing/avro/XField_avro_btest.cppedittest/unit/Meshing/avro/MesherInterface_avro_btest.cppaddsrc/Meshing/avro/XField_avro_impl.hedittest/sandbox/Adapt3D_CG_AD_L2_MultiScale_toy.cppeditCMakeInclude/Builds/parmetis-CMakeLists.patchedittest/unit/CMakeLists.txteditCMakeInclude/Builds/BuildPARMETIS.cmakeeditCMakeInclude/Checks/CheckAVRO.cmakeeditsrc/Meshing/EGTess/CMakeLists.txtedittest/sandbox/Adapt3D_DGBR2_AD_HemisphereCylinder_toy.cppaddsrc/Meshing/avro/XField_avro.cppdeletesrc/Meshing/EGTess/XFieldDomain_impl.heditsrc/Adaptation/MeshAdapter.heditsrc/Meshing/EGADS/EGModel.hdeletesrc/Meshing/EGTess/XFieldDomain.hedittest/system/Asymptotic/Adjoint2D_DGBR2_Triangle_AD_btest.cppaddsrc/Meshing/avro/XField_avro.hedittest/sandbox/Adapt3D_DGBR2_AD_TripleBoundaryLayer_toy.cppedittest/system/CMakeLists.txteditsrc/Adaptation/callMesher.hdeletesrc/Meshing/EGTess/XFieldDomain.cppedittest/sandbox/Adapt3D_DGBR2_NavierStokes_DeltaWing_toy.cppeditsrc/Field/XField.heditsrc/Adaptation/MeshAdapter.cppedittest/sandbox/Adapt3D_L2Project_MOESS_toy.cppeditCMakeInclude/Finds/FindAVRO.cmakeeditsrc/Meshing/avro/CMakeLists.txteditsrc/Adaptation/callMesher3D.cppedittest/sandbox/Adapt3D_CG_AD_L2_MOESS_toy.cppdeletetest/unit/Meshing/EGTess/XFieldDomain_btest.cppedittest/sandbox/Adapt3D_Mesh_Optimizer_toy.cppedittest/unit/UnitGrids/CMakeLists.txtedittest/sandbox/Adapt4D_Mesh_Optimizer_toy.cppedittest/sandbox/CMakeLists.txteditCMakeInclude/Builds/BuildREFINE.cmakeeditsrc/Adaptation/callMesher2D.cppeditCMakeInclude/Builds/BuildAVRO.cmakeedittest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_avro_toy.cppedittest/sandbox/Adapt2D_Mesh_Optimizer_toy.cppeditCMakeInclude/Dependencies.cmakeedittest/sandbox/Adapt3D_DG_AD_L2_MOESS_toy.cppeditsrc/Meshing/EGADS/EGModel.cppeditCMakeInclude/HeaderCompileCheck.cmakeeditsrc/Meshing/avro/MesherInterface_avro.htest/unit/Discretization/HDG/CMakeLists.txttest/unit/Discretization/Block/CMakeLists.txttest/system/Asymptotic/CMakeLists.txttest/system/LocalSolve/CMakeLists.txttest/unit/Field/Element/CMakeLists.txt8fc4192886845179ab68e01014574a54edddce6b1546224891000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduConsistent logic for setting cmake testing timout property 2018-12-30 21:54:51 -05008fc4192886845179ab68e01014574a54edddce6bConsistent logic for setting cmake testing timout propertyedittest/system/Asymptotic/CMakeLists.txtedittest/system/LocalSolve/CMakeLists.txtedittest/unit/Field/Element/CMakeLists.txtedittest/unit/Discretization/Block/CMakeLists.txtedittest/unit/Discretization/HDG/CMakeLists.txtsrc/Meshing/refine/MesherInterface_refine.cppCMakeInclude/Builds/BuildAVRO.cmakef8772613190382ad6dbc45cf4814c43e38c1108c1546228191000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed refine interface change 2018-12-30 22:49:51 -0500f8772613190382ad6dbc45cf4814c43e38c1108cFixed refine interface changeeditCMakeInclude/Builds/BuildAVRO.cmakeeditsrc/Meshing/refine/MesherInterface_refine.cppsrc/Meshing/avro/XField_avro.hsrc/Adaptation/MOESS/NodalMetrics.h5175b456d3332d294972fbcc4cddde64ea21f2601546267262000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix ifdef when not using avro 2018-12-31 09:41:02 -05005175b456d3332d294972fbcc4cddde64ea21f260Fix ifdef when not using avroeditsrc/Meshing/avro/XField_avro.heditsrc/Adaptation/MOESS/NodalMetrics.hsrc/Meshing/avro/XField_avro_impl.hCMakeInclude/Builds/BuildAVRO.cmakeCMakeInclude/Dependencies.cmakeCMakeInclude/Finds/FindAVRO.cmakeCMakeInclude/SANScotire.cmakesrc/Meshing/avro/XField_avro.cpp235be4ecf04f93d7b6a1ccb5234bd7f44f9646891546273930000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMore fixes to deal with avro 2018-12-31 11:32:10 -0500235be4ecf04f93d7b6a1ccb5234bd7f44f964689More fixes to deal with avroeditsrc/Meshing/avro/XField_avro.cppeditCMakeInclude/SANScotire.cmakeeditCMakeInclude/Dependencies.cmakeeditCMakeInclude/Builds/BuildAVRO.cmakeeditCMakeInclude/Finds/FindAVRO.cmakeeditsrc/Meshing/avro/XField_avro_impl.hCMakeInclude/Checks/CheckAVRO.cmakea80311be6ec378d24095df115131f9553b6bf6f01546274163000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMinor cleanup 2018-12-31 11:36:03 -0500a80311be6ec378d24095df115131f9553b6bf6f0Minor cleanupeditCMakeInclude/Checks/CheckAVRO.cmaketest/unit/pde/IBL/PDEIBL2D_btest.cppsrc/pde/IBL/PDEIBL2D.ha8a52c39337e1e83f592964ec30f622936f972651546274322000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded unit tests for IBL updateFraction 2018-12-31 11:38:42 -0500a8a52c39337e1e83f592964ec30f622936f97265Added unit tests for IBL updateFractionedittest/unit/pde/IBL/PDEIBL2D_btest.cppeditsrc/pde/IBL/PDEIBL2D.hCMakeInclude/Builds/BuildPETSC.cmakescripts/jenkins/jenkins_env.shscripts/jenkins/SANS_Depend.sh9a95acc98a8b50f01cdb7cf57f537931a1f738f11546280841000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpgrade PETSc 2018-12-31 13:27:21 -05009a95acc98a8b50f01cdb7cf57f537931a1f738f1Upgrade PETSceditCMakeInclude/Builds/BuildPETSC.cmakeeditscripts/jenkins/SANS_Depend.sheditscripts/jenkins/jenkins_env.shsrc/Meshing/avro/MesherInterface_avro.cppCMakeInclude/Builds/BuildAVRO.cmakesrc/Meshing/avro/CMakeLists.txtCMakeInclude/Builds/BuildPETSC.cmakeCMakeInclude/Finds/FindAVRO.cmake6ea45e876dcfa9a4caf06bad27702d9c3958342e1546299281000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMore avro and PETSc tweaks 2018-12-31 18:34:41 -05006ea45e876dcfa9a4caf06bad27702d9c3958342eMore avro and PETSc tweakseditCMakeInclude/Builds/BuildAVRO.cmakeeditsrc/Meshing/avro/CMakeLists.txteditCMakeInclude/Builds/BuildPETSC.cmakeeditsrc/Meshing/avro/MesherInterface_avro.cppeditCMakeInclude/Finds/FindAVRO.cmakesrc/Meshing/avro/CMakeLists.txtd578c14434377dd66a6c94f052f61917d356a5f01546310340000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduI don't understand why dl library is needed to link a static library... 2018-12-31 21:39:00 -0500d578c14434377dd66a6c94f052f61917d356a5f0I don't understand why dl library is needed to link a static library...editsrc/Meshing/avro/CMakeLists.txtCMakeInclude/Checks/ref_check.c6d47a03dcde3c646b91bfbfa0761e8097d32735f1546355557000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix for refine check 2019-01-01 10:12:37 -05006d47a03dcde3c646b91bfbfa0761e8097d32735fFix for refine checkeditCMakeInclude/Checks/ref_check.cCMakeInclude/Builds/BuildPETSC.cmakea1ca0e5a148ef103373a17c6d415ab11c76a61081546361324000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduSuppress compiler warning when building PETSc 2019-01-01 11:48:44 -0500a1ca0e5a148ef103373a17c6d415ab11c76a6108Suppress compiler warning when building PETSceditCMakeInclude/Builds/BuildPETSC.cmakesrc/Meshing/avro/XField_avro_impl.hsrc/Field/Partition/XField_Lagrange_ParMetis_impl.hCMakeInclude/Builds/BuildPETSC.cmakescripts/jenkins/SANS_Depend.sh28a289a2790fd48abe2753668368327ea24aebec1546444331000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix for avro with 4D 2019-01-02 10:52:11 -050028a289a2790fd48abe2753668368327ea24aebecFix for avro with 4Deditsrc/Field/Partition/XField_Lagrange_ParMetis_impl.heditsrc/Meshing/avro/XField_avro_impl.heditscripts/jenkins/SANS_Depend.sheditCMakeInclude/Builds/BuildPETSC.cmakescripts/jenkins/cmake_jenkins.shc6c3bf53113175b0e2094a95c9f5ff760a155b711546476246000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduEnable refine testing again 2019-01-02 19:44:06 -0500c6c3bf53113175b0e2094a95c9f5ff760a155b71Enable refine testing againeditscripts/jenkins/cmake_jenkins.shscripts/util/UpdateCopyright.she3bc4756b8e24566fff989637a0735319e23a4fc1546524160000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdated copyright date to 2019 2019-01-03 09:02:40 -0500e3bc4756b8e24566fff989637a0735319e23a4fcUpdated copyright date to 2019addscripts/util/UpdateCopyright.shsrc/Discretization/HDG/AWResidualCell_HDG.hsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_Sensor2D_AUSJump_Euler2D_Conservative.cppsrc/Field/FieldSpacetime_DG_Trace_impl.hsrc/ErrorEstimate/DG/ErrorEstimate_DGBR2.hsrc/Discretization/Galerkin/JacobianFunctionalBoundaryTrace_Galerkin.hsrc/Discretization/HDG/Instantiate/AlgebraicEquationSet_HDG_NavierStokes2D_Primitive_ConstantViscosity.cppsrc/ErrorEstimate/DistributeBoundaryTraceGroups.hsrc/Discretization/LIP_HACK/IntegrandInteriorTrace_Galerkin_WakeCut_LIP_SRA.hsrc/Field/FieldVolume_DG_Cell_impl.hsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_AdvectionDiffusion2D_AUDUSN.cppsrc/Field/Element/ElementXFieldArea.hsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_AdvectionDiffusion1D_AUDUSN.cppsrc/BasisFunction/BasisFunctionVolume_Tetrahedron_Legendre.hsrc/Field/FieldLine_DG_BoundaryTrace_Instantiate_2D.cppsrc/Field/FieldLine_CG_BoundaryTrace_impl.hsrc/Field/FieldData/FieldDataVectorD_BoundaryCell.hsrc/Discretization/Galerkin/JacobianCell_Galerkin_CutCellTransitionIBLUniField.hsrc/BasisFunction/BasisFunctionLine.hsrc/Field/FieldLine_DG_HubTrace_Instantiate_2D.cppsrc/Field/FieldAssociativity.hsrc/Field/FieldLine_CG_BoundaryTrace_Instantiate_1D.cppsrc/Field/FieldArea_CG_Cell_Instantiate_2D.cppsrc/Discretization/HDG/IntegrandBoundaryTrace_Flux_mitState_HDG.hsrc/BasisFunction/BasisFunctionVolume_Tetrahedron_Lagrange.hsrc/BasisFunction/BasisFunctionVolume_Projection.hsrc/Discretization/Galerkin/IntegrandBoundaryTrace_Dirichlet_sansLG_Galerkin_manifold.hsrc/Field/Field_NodalView_Spacetime.cppsrc/Discretization/HDG/ResidualBoundaryTrace_Dispatch_HDG.hsrc/BasisFunction/ReferenceElement.cppsrc/Discretization/HDG/IntegrandBoundaryTrace_HubTrace_HDGAdvective.hsrc/Discretization/DG/JacobianCell_DGBR2_Param.hsrc/Field/Field_CG_CellConstructor.hsrc/Field/FieldGroupVolume_Traits.hsrc/Field/Partition/XField_Lagrange_Distribute_impl.hsrc/Field/FieldVolume.hsrc/Discretization/DG/JacobianCell_DGBR2.hsrc/Field/DistanceFunction/DistanceFunction_KDVertex.hsrc/Field/FieldVolume_CG_Cell_impl.hsrc/Discretization/Galerkin/ResidualBoundaryTrace_Dirichlet_mitLG_Galerkin.hsrc/Field/FieldSpacetime_DG_Cell_Instantiate_4D.cppsrc/Field/Element/ElementAssociativityVolume.cppsrc/Discretization/Galerkin/JacobianBoundaryTrace_Galerkin.hsrc/Field/Field_CG_TraceConstructor.hsrc/BasisFunction/BasisFunctionVolume_Tetrahedron_Hierarchical.hsrc/Field/FieldLift_DG_CellBase_impl.hsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_ArtificialViscosity_TwoPhase2D.cppsrc/Field/FieldAssociatvitySequence.hsrc/Field/FieldArea_DG_BoundaryTrace_Instantiate_2D.cppsrc/Discretization/isValidState/isValidStateCell.hsrc/Discretization/Galerkin/FunctionalBoundaryTrace_Dispatch_Galerkin.hsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_Sensor2D_AUSJump_Euler1D_Conservative.cppsrc/Discretization/Block/AlgebraicEquationSet_Block2x2_Real_Real.cppsrc/BasisFunction/BasisFunctionArea_Quad.hsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_AdvectionDiffusion1D_AUDUSUG.cppsrc/Discretization/DG/MassMatInvResidualNorm.hsrc/Discretization/LIP_HACK/IntegrandFunctor_Galerkin_WakeCut_sansLG.hsrc/Discretization/DG/JacobianInteriorTrace_DGBR2_Param.hsrc/Discretization/DG/JacobianInteriorTrace_DGBR2_LiftedQuantity.hsrc/Discretization/DG/SetFieldBoundaryTrace_Dispatch_LiftingOperator.hsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_Sensor2D_AUSJump_Euler2D_Primitive.cppsrc/Field/Element/ElementAssociativityNode.hsrc/ErrorEstimate/Galerkin/ErrorEstimate_StrongForm_Galerkin.hsrc/Field/FieldLinesearch/FieldLinesearch_Volume.hsrc/ErrorEstimate/Galerkin/ErrorEstimateBoundaryTrace_Dispatch_Galerkin.hsrc/BasisFunction/BasisFunctionVolume_Tetrahedron_Hierarchical.cppsrc/Field/FieldData/FieldDataInvMassMatrix_Cell.cppsrc/Field/FieldLine_DG_InteriorTrace_Instantiate_2D.cppsrc/Discretization/DG/DGAdvective_Instantiate/AlgebraicEquationSet_DGAdvective_Euler1D_Conservative.cppsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_RANSSA2D_PrimitiveSutherland.cppsrc/Field/FieldBaseVolume_Instantiate.cppsrc/Adaptation/MOESS/CostModel_LogEuclidean.cppsrc/Discretization/HDG/IntegrandBoundaryTrace_Output_HDG.hsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_RANSSA_Source2D_PrimitiveConstVisc.cppsrc/BasisFunction/TraceToCellRefCoord_Tetrahedron.cppsrc/Field/FieldLine_DG_Trace_Instantiate_1D.cppsrc/Discretization/LIP_HACK/JacobianCell_Galerkin_Kutta.hsrc/BasisFunction/Quadrature_Cache.hsrc/Field/Element/ElementXFieldLine.hsrc/Discretization/HDG/JacobianFunctionalBoundaryTrace_Dispatch_HDG.hsrc/Discretization/HDG/JacobianBoundaryTrace_HDG.hsrc/Field/FieldLiftArea_DG_Cell_impl.hsrc/Field/Tuple/FieldAssociativityBaseTuple.hsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_NavierStokes2D_PrimitiveConstVisc.cppsrc/Field/FieldVolume_CG_Cell.hsrc/Field/Element/ElementXFieldSpacetime_impl.hsrc/Field/CountGhostNeighbors.hsrc/Field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ctive_Instantiate/AlgebraicEquationSet_DGAdvective_Euler3D_PrimitiveRhoPressure.cppsrc/Field/FieldArea_CG_Trace_impl.hsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_Euler1D_AV1D_Conservative.cppsrc/Field/Field_DG_HubTraceBase.hsrc/Discretization/DG/Integrand_DGBR2_fwd.hsrc/Field/FieldLinesearch/FieldLinesearchBase.hsrc/Discretization/HDG/AlgebraicEquationSet_Local_HDG.hsrc/Field/Element/BoundingBox.cppsrc/Discretization/DG/DGAdvective_Instantiate/AlgebraicEquationSet_DGAdvective_AdvectionDiffusion2D_Annulus_DNSN.cppsrc/Adaptation/MeshAdapter.hsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_RANSSA3D_SurrogateSutherland.cppsrc/Field/FieldLine_DG_HubTrace_impl.hsrc/Field/Element/ElementSequence.hsrc/Field/FieldLine_DG_Trace.hsrc/Adaptation/MOESS/SolverInterface_DGBR2_Block2x2.hsrc/Discretization/Potential_Drela/IntegrandBoundaryTrace_WakeCut_CG_FP_Drela.hsrc/Discretization/HDG/JacobianBoundaryTrace_Dispatch_HDG_AuxiliaryVariable.hsrc/Field/Element/ElementAssociativityLineConstructor.hsrc/Discretization/Block/AlgebraicEquationSet_Block2x2_VecS3_Real.cppsrc/Field/Function/FunctionIntegral.hsrc/Field/FieldSpacetime_DG_Trace.hsrc/Discretization/LIP_HACK/Nishida_Hack.hsrc/Discretization/Galerkin/JacobianCell_Galerkin_CutCellTransitionIBL.hsrc/Adaptation/MOESS/MOESS_CostModel.hsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_TwoPhase2D_LogpnSw.cppsrc/Discretization/Galerkin/IntegrandBoundaryTrace_LinearScalar_mitLG_Galerkin.hsrc/Discretization/HDG/Instantiate/AlgebraicEquationSet_HDG_Euler2D_PrimitiveRhoPressure.cppsrc/Discretization/Galerkin/IntegrandCell_Galerkin_CutCellTransitionIBL.hsrc/Discretization/isValidState/isValidStateBoundaryTrace_mitLG.hsrc/Field/FieldLiftGroupVolume_Traits.hsrc/BasisFunction/BasisFunctionSpacetime_Pentatope_Lagrange.cppsrc/Field/Element/ElementAssociativityLine.cppsrc/Field/FieldLine.hsrc/Discretization/Galerkin/IntegrandBoundaryTrace_Dirichlet_mitLG_Galerkin.hsrc/BasisFunction/BasisFunctionArea_Triangle_Hierarchical.cppsrc/BasisFunction/BasisFunctionVolume_Hexahedron_Legendre.cppsrc/Field/FieldSpacetime_CG_Cell_impl.hsrc/Adaptation/MOESS/SolverInterface_L2Project.hsrc/Discretization/HDG/DiscretizationHDG.hsrc/Field/Element/ElementXFieldVolume.hsrc/Field/FieldArea_DG_Cell_Instantiate_2D.cppsrc/Field/ProjectSoln/PointwiseSolutionStorage.cppsrc/Field/FieldLiftGroupLine_Traits.hsrc/Adaptation/MOESS/ErrorModel_Elemental.cppsrc/Adaptation/MOESS/SolverInterface_Galerkin.hsrc/Field/FieldLine_CG_Cell_Instantiate_1D.cppsrc/Field/Element/ElementalMassMatrix.hsrc/Field/FieldLine_DG_HubTrace.hsrc/Discretization/Galerkin/JacobianCell_Galerkin.hsrc/Field/Element/ElementXFieldJacobianEquilateral.cppsrc/Field/Function/WeightedFunctionIntegral.hsrc/Discretization/DG/SetFieldInteriorTrace_DGBR2_AdjointLO.hsrc/Field/FieldArea_DG_BoundaryTrace_Instantiate_3D.cppsrc/BasisFunction/BasisFunctionVolume_Hexahedron_RBS.hsrc/Discretization/Block/JacobianParam_Decoupled.hsrc/BasisFunction/BasisFunction_RefElement_Split.cppsrc/BasisFunction/BasisFunctionLine_Lagrange.hsrc/Field/Element/ElementAssociativityVolume.hsrc/BasisFunction/TraceToCellRefCoord_Triangle.cppsrc/Discretization/Galerkin/IntegrandInteriorTrace_Galerkin_manifold.hsrc/Field/ProjectSoln/PointwiseSolutionStorage.hsrc/Field/Element/ElementAssociativitySpacetimeConstructor.cppsrc/Discretization/Galerkin/JacobianBoundaryTrace_mitLG_Galerkin.hsrc/BasisFunction/BasisFunctionLineBase.hsrc/Adaptation/MOESS/NLOPT/ImpliedMetric_Optimizer_NLOPT.hsrc/Field/Field_NodalView_Line.cppsrc/Discretization/DG/JacobianBoundaryTrace_DGBR2.hsrc/Discretization/LIP_HACK/JacobianBoundaryTrace_Galerkin_WakeCut_LIP.hsrc/ErrorEstimate/Galerkin/ErrorEstimateCell_Galerkin.hsrc/Field/FieldLine_DG_Trace_Instantiate_2D.cppsrc/Field/Element/ElementLift.hsrc/Field/FieldData/FieldDataMatrixD_TraceLift.hsrc/Field/XFieldArea.hsrc/Field/Element/ElementXFieldLine_Instantiate_3Dand4D.cppsrc/BasisFunction/BasisFunction_TraceOrientation.cppsrc/Discretization/HDG/ResidualBoundaryTrace_Dispatch_HDGAdvective.hsrc/ErrorEstimate/DG/ErrorEstimateBoundaryTrace_Dispatch_DGBR2.hsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_Sensor1D_AUSJump_AD.cppsrc/BasisFunction/BasisFunction_RefElement_Split_TraceToCell.hsrc/Discretization/Galerkin/JacobianCell_Galerkin_BDF.hsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_NavierStokes2D_ConservativeConstVisc.cppsrc/BasisFunction/TraceToCellRefCoord_Pentatope.cppsrc/BasisFunction/BasisFunctionLine_Projection.cppsrc/Discretization/Block/AlgebraicEquationSet_Block4x4.hsrc/Discretization/DG/AlgebraicEquationSet_Local_DG_impl.hsrc/BasisFunction/BasisFunctionLine_Bernstein.cppsrc/Field/FieldLine_DG_BoundaryTrace.hsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_AdvectionDiffusion2D_AUDUSUG.cppsrc/Discretization/IntegrateBoundaryTraceGroups_HubTrace.hsrc/Adaptation/MOESS/ReferenceStepMatrix.hsrc/BasisFunction/BasisFunctionArea_Triangle_Lagrange.hsrc/Field/SpaceTypes.hsrc/Discretization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rorEstimateBoundaryTrace_Galerkin.hsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_TwoPhase2D.cppsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_BuckleyLeverett_AV1D.cppsrc/Adaptation/callMesher.hsrc/Discretization/JacobianParam_Local.hsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_ArtificialViscosity_BuckleyLeverett1D.cppsrc/ErrorEstimate/DG/Instantiate/ErrorEstimate_DGBR2_AdvectionDiffusion2D_AUDUSUG.cppsrc/Field/Element/ElementAssociativityNodeConstructor.hsrc/Field/FieldLine_DG_Cell_Instantiate_2D.cppsrc/Field/GroupElementType.hee51fd2e4c7c9f4a5cf4c3aeaa4d999c6b3b47ce1546524233000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdated copyright date to 2019 2019-01-03 09:03:53 -0500ee51fd2e4c7c9f4a5cf4c3aeaa4d999c6b3b47ceUpdated copyright date to 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local splits 2019-01-04 12:03:55 -05002b3f4d97f0044e3e8e8c1a7c53948c2660b60579dimension-independent local splitsedittest/unit/Field/Local/XField_LocalPatch_Tet_btest.cppedittest/unit/Field/Local/XField_LocalPatch_Pentatope_btest.cppeditsrc/Field/Local/XField_LocalPatch.hedittest/unit/Field/Local/XField_LocalPatch_Triangle_btest.cppeditsrc/Field/Local/XField_LocalPatch.cpptest/system/Timing/CMakeLists.txtsrc/Field/Element/ElementAssociativityVolumeConstructor.cpptest/unit/Field/Local/XField_LocalPatch_Tet_btest.cpptest/system/CMakeLists.txttest/system/Timing/XField_LocalSplit_Timing_btest.cppsrc/Field/XField_Local_Common.hsrc/Field/XField_ElementLocal_impl.hsrc/Field/Local/XField_LocalPatch.cpptest/unit/Field/Local/XField_LocalPatch_Pentatope_btest.cppc65b021b3a95e49207aeab067924aed173702a3e1546638240000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edutiming tests show dim-independent implementation on par with savithru's impl...tried to debug hugh's local xfield in primal mode but something is wrong...unit tests on the way 2019-01-04 16:44:00 -0500c65b021b3a95e49207aeab067924aed173702a3etiming tests show dim-independent implementation on par with savithru's impl...tried to debug hugh's local xfield in primal mode but something is wrong...unit tests on the wayeditsrc/Field/XField_Local_Common.hedittest/unit/Field/Local/XField_LocalPatch_Tet_btest.cppeditsrc/Field/Local/XField_LocalPatch.cppaddtest/system/Timing/CMakeLists.txtaddtest/system/Timing/XField_LocalSplit_Timing_btest.cppedittest/unit/Field/Local/XField_LocalPatch_Pentatope_btest.cppeditsrc/Field/Element/ElementAssociativityVolumeConstructor.cppedittest/system/CMakeLists.txteditsrc/Field/XField_ElementLocal_impl.htest/sandbox/Adapt1D_Galerkin_Stabilized_AD_BoundaryLayer_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_L2_ASExp_toy.cpptest/sandbox/Adapt2D_DGBR2_L2_ASExp_toy.cpptest/sandbox/Adapt2D_DGBR2_NavierStokes_FlatPlate_toy.cpptest/sandbox/Adapt2D_DGBR2_L2_CornerSingularity_toy.cpptest/unit/pde/AnalyticFunction/AD_TripleBL_Solutions.nbtest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cpptest/sandbox/Adapt1D_DGBR2_MMS_toy.cpptest/sandbox/Adapt2D_Mesh_Optimizer_toy.cpptest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AR_toy.cppsrc/Discretization/Galerkin/Stabilization_Galerkin.htest/sandbox/Adapt2D_DGBR2_Poisson_toy.cpp75d70bc1df8546726426b5f416ff5b9512bf97f81547130591000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edureconciling merge conflicts and some tweaks 2019-01-10 09:29:51 -050075d70bc1df8546726426b5f416ff5b9512bf97f8reconciling merge conflicts and some tweakseditsrc/Discretization/Galerkin/Stabilization_Galerkin.hedittest/sandbox/Adapt2D_DGBR2_NavierStokes_FlatPlate_toy.cppedittest/sandbox/Adapt2D_DGBR2_Poisson_toy.cppedittest/sandbox/Adapt1D_Galerkin_Stabilized_AD_BoundaryLayer_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_L2_ASExp_toy.cppedittest/sandbox/Adapt1D_DGBR2_MMS_toy.cppedittest/sandbox/Adapt2D_Mesh_Optimizer_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_NavierStokes_FlatPlate_toy.cppedittest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_toy.cppedittest/sandbox/Adapt2D_DGBR2_L2_CornerSingularity_toy.cppedittest/unit/pde/AnalyticFunction/AD_TripleBL_Solutions.nbedittest/sandbox/Adapt2D_DGBR2_L2_ASExp_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_AR_toy.cpptest/sandbox/Adapt2D_DGBR2_L2_ASExp_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_L2_ASExp_toy.cppsrc/pde/OutputCell_SolutionError.htest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_MultiScale_toy.cpp1ff9fa4f4761de0d00f3c543024c21f2a16705df1547131545000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edulicense updates 2019-01-10 09:45:45 -05001ff9fa4f4761de0d00f3c543024c21f2a16705dflicense updateseditsrc/pde/OutputCell_SolutionError.hedittest/sandbox/Adapt2D_DGBR2_L2_ASExp_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_L2_ASExp_toy.cppedittest/sandbox/Adapt3D_Galerkin_Stabilized_AD_TripleBoundaryLayer_MultiScale_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cpp034954caa8a487bfbe5aed4a228f4400e2bcf83f1547146188000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edufixes to match avro 2019-01-10 13:49:48 -0500034954caa8a487bfbe5aed4a228f4400e2bcf83ffixes to match avroedittest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cpp38a68a6d61148b57a718ac1f24c236cc3a21395b1547159075000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduforgot to add the avro defined precompile check 2019-01-10 17:24:35 -050038a68a6d61148b57a718ac1f24c236cc3a21395bforgot to add the avro defined precompile checkedittest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cppedittest/sandbox/Adapt2D_Galerkin_Stabilized_AD_DoubleBoundaryLayer_toy.cpptest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cppa272112dabb4b6f0f31467f3055fe12307658e081547215445000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edurelaxed tolerances and forgot to split world 2019-01-11 09:04:05 -0500a272112dabb4b6f0f31467f3055fe12307658e08relaxed tolerances and forgot to split worldedittest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cppedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cpptest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cpptest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cpp834053e5f9ba93ed6c3eb14fbeac0cdf1537435b1547224393000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edutweaking tol again... 2019-01-11 11:33:13 -0500834053e5f9ba93ed6c3eb14fbeac0cdf1537435btweaking tol again...edittest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cppedittest/system/LocalSolve/EdgeLocalSolve2D_Dual_Galerkin_Stabilized_AD_btest.cpptest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cpp2627c8650ec377305d7a7cde14a8e86638dd7b261547228571000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduanother tweak... 2019-01-11 12:42:51 -05002627c8650ec377305d7a7cde14a8e86638dd7b26another tweak...edittest/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cpptest/unit/Field/Local/XField_LocalPatch_Triangle_btest.cpptest/unit/Field/XField2D_ElementLocal_Dual_WholeGrids_btest.cpptest/unit/Field/Local/XField_LocalPatch_Tet_btest.cpptest/system/Timing/XField_LocalSplit_Timing_btest.cppsrc/Field/Local/XField_LocalPatch.hsrc/Field/Local/XField_LocalPatch.cpptest/unit/Field/Local/XField_LocalPatch_Pentatope_btest.cppa5965d5f987d2be56dcdaf592f901ab7133416071547238371000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.educleanup of localpatch + commenting 2019-01-11 15:26:11 -0500a5965d5f987d2be56dcdaf592f901ab713341607cleanup of localpatch + commentingeditsrc/Field/Local/XField_LocalPatch.cppedittest/unit/Field/Local/XField_LocalPatch_Triangle_btest.cppeditsrc/Field/Local/XField_LocalPatch.hedittest/system/Timing/XField_LocalSplit_Timing_btest.cppedittest/unit/Field/Local/XField_LocalPatch_Tet_btest.cppedittest/unit/Field/XField2D_ElementLocal_Dual_WholeGrids_btest.cppedittest/unit/Field/Local/XField_LocalPatch_Pentatope_btest.cppsrc/Field/XFieldSpacetime_Local_Split.cppsrc/Field/XFieldSpacetime_Local_Split_Linear_Edge.hsrc/Field/XFieldSpacetime_Local_Split_Linear_Edge.cppsrc/Field/XFieldSpacetime_EdgeLocal.cppsrc/Field/XFieldSpacetime_Local_Split.hsrc/Field/XFieldSpacetime_ElementLocal.cppsrc/Field/Local/XField_LocalPatch.cpp05a736ac5ea88b57e563ec22b133c14627f667861547239662000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.educopyright 2019-01-11 15:47:42 -050005a736ac5ea88b57e563ec22b133c14627f66786copyrighteditsrc/Field/Local/XField_LocalPatch.cppeditsrc/Field/XFieldSpacetime_EdgeLocal.cppeditsrc/Field/XFieldSpacetime_Local_Split_Linear_Edge.cppeditsrc/Field/XFieldSpacetime_Local_Split.heditsrc/Field/XFieldSpacetime_Local_Split_Linear_Edge.heditsrc/Field/XFieldSpacetime_ElementLocal.cppeditsrc/Field/XFieldSpacetime_Local_Split.cpptest/unit/Field/XField4D_Local_Split_EdgeSplits_btest.cppsrc/Field/XField_Local_Common_Instantiate_4D.cpptest/unit/Field/XField4D_Local_Split_Linear_EdgeSplits_btest.cpptest/unit/Field/XField4D_ElementLocal_btest.cpp3dc4e922d3a3a08f611ff3ef537a46317b54ed2b1547240136000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edumore copyright 2019-01-11 15:55:36 -05003dc4e922d3a3a08f611ff3ef537a46317b54ed2bmore copyrightedittest/unit/Field/XField4D_Local_Split_EdgeSplits_btest.cppedittest/unit/Field/XField4D_Local_Split_Linear_EdgeSplits_btest.cppedittest/unit/Field/XField4D_ElementLocal_btest.cppeditsrc/Field/XField_Local_Common_Instantiate_4D.cpptest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cppCMakeInclude/CompilerFlags.cmakeCMakeInclude/Builds/BuildSUITESPARSE.cmakesrc/Adaptation/MOESS/NLOPT/MOESS_Gradation_Optimizer_NLOPT.cppsrc/Adaptation/MOESS/TAO/MOESS_PX_Optimizer_TAO.cppCMakeLists.txttest/unit/Adaptation/MOESS/TAO/MOESS_PX_Optimizer_TAO_btest.cppsrc/Adaptation/MOESS/NLOPT/ImpliedMetric_Optimizer_NLOPT.cppCMakeInclude/Builds/BuildBoost.cmaketest/unit/Adaptation/MOESS/ImpliedMetric_Optimizer_NLOPT_btest.cppsrc/Adaptation/MOESS/TAO/ImpliedMetric_Optimizer_TAO.cpptest/unit/Adaptation/MOESS/MOESS_PX_Optimizer_NLOPT_btest.cpptest/unit/Adaptation/MOESS/MOESS_Gradation_Optimizer_NLOPT_btest.cppCMakeInclude/MakeSummaryFile.cmaketest/unit/Adaptation/MOESS/TAO/CMakeLists.txtbacb5df6d1dc727cdae9053eb9ec5f46210d9e381547310343000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdates for MOESS optimizations. Still needs more work. 2019-01-12 11:25:43 -0500bacb5df6d1dc727cdae9053eb9ec5f46210d9e38Updates for MOESS optimizations. Still needs more work.edittest/unit/Adaptation/MOESS/TAO/MOESS_PX_Optimizer_TAO_btest.cppeditsrc/Adaptation/MOESS/NLOPT/ImpliedMetric_Optimizer_NLOPT.cppedittest/unit/Adaptation/MOESS/ImpliedMetric_Optimizer_NLOPT_btest.cppedittest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cppeditsrc/Adaptation/MOESS/TAO/MOESS_PX_Optimizer_TAO.cppedittest/unit/Adaptation/MOESS/TAO/CMakeLists.txteditCMakeInclude/Builds/BuildBoost.cmakeeditsrc/Adaptation/MOESS/TAO/ImpliedMetric_Optimizer_TAO.cppeditsrc/Adaptation/MOESS/NLOPT/MOESS_Gradation_Optimizer_NLOPT.cppedittest/unit/Adaptation/MOESS/MOESS_Gradation_Optimizer_NLOPT_btest.cppeditCMakeInclude/MakeSummaryFile.cmakeeditCMakeLists.txteditCMakeInclude/Builds/BuildSUITESPARSE.cmakeedittest/unit/Adaptation/MOESS/MOESS_PX_Optimizer_NLOPT_btest.cppeditCMakeInclude/CompilerFlags.cmakesrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion3D.hsrc/pde/NDConvert/PDENDConvertSpaceTime3D.hsrc/Discretization/AlgebraicEquationSet_Debug.hsrc/pde/AnalyticFunction/ScalarFunction3D.cppsrc/pde/AnalyticFunction/ScalarFunction2D.hsrc/Field/FieldLiftSpaceTime_DG_Cell.hsrc/Field/FieldLiftGroupSpacetime_Traits.hsrc/pde/ForcingFunction3D_MMS.hsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion3D.hsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_AdvectionDiffusion3D_AUDUSUG.cppsrc/Field/CMakeLists.txttest/sandbox/Solve3D_DGBR2_AD_ST_toy.cppsrc/Field/FieldLiftSpaceTime_DG_Cell_Instantiate_4D.cppsrc/Discretization/IntegrateBoundaryTraceGroups_FieldTrace.hsrc/Field/FieldLinesearch/FieldLinesearch_SpaceTime_Instantiate.cppsrc/Discretization/IntegratePeriodicTraceGroups.hsrc/Discretization/IntegrateInteriorTraceGroups.hsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion2D.hsrc/Discretization/IntegrateBoundaryTraceGroups.hsrc/pde/NDConvert/PDENDConvertSpaceTime2D.hsrc/pde/AnalyticFunction/ScalarFunction3D.hsrc/Field/FieldLinesearch/FieldLinesearch_SpaceTime.hsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion2D.hsrc/Field/Field_Local.hsrc/Field/FieldLiftSpaceTime_DG_Cell_impl.hsrc/Field/FieldLinesearch/FieldLinesearch_SpaceTime_impl.hsrc/Discretization/UpdateFraction/UpdateFractionCell.hsrc/Field/output_Tecplot.cppsrc/Field/FieldSequence.htest/system/Asymptotic/ErrorOrder_4D_DG_Pentatope_btest.cppsrc/Adaptation/MOESS/SolverInterface.hsrc/Field/output_Tecplot.h2271badaaaaaacd329148d4cd9d79b61682895c51547337932000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduInstantiations for 4D AD solve. 2019-01-12 19:05:32 -05002271badaaaaaacd329148d4cd9d79b61682895c5Instantiations for 4D AD solve.addsrc/Field/FieldLiftSpaceTime_DG_Cell_impl.heditsrc/Discretization/IntegrateBoundaryTraceGroups_FieldTrace.heditsrc/Field/CMakeLists.txtaddsrc/Field/FieldLiftSpaceTime_DG_Cell.hedittest/system/Asymptotic/ErrorOrder_4D_DG_Pentatope_btest.cppeditsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion2D.heditsrc/pde/NDConvert/PDENDConvertSpaceTime3D.heditsrc/Discretization/IntegrateBoundaryTraceGroups.haddsrc/Field/FieldLiftGroupSpacetime_Traits.haddsrc/Field/FieldLinesearch/FieldLinesearch_SpaceTime_Instantiate.cppeditsrc/Discretization/IntegratePeriodicTraceGroups.haddsrc/Field/FieldLinesearch/FieldLinesearch_SpaceTime.heditsrc/pde/AnalyticFunction/ScalarFunction3D.heditsrc/Discretization/IntegrateInteriorTraceGroups.heditsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion3D.heditsrc/Field/Field_Local.heditsrc/Discretization/AlgebraicEquationSet_Debug.heditsrc/Field/FieldSequence.heditsrc/pde/ForcingFunction3D_MMS.heditsrc/Discretization/UpdateFraction/UpdateFractionCell.heditsrc/pde/AnalyticFunction/ScalarFunction2D.heditsrc/pde/AnalyticFunction/ScalarFunction3D.cppeditsrc/Adaptation/MOESS/SolverInterface.haddsrc/Field/FieldLiftSpaceTime_DG_Cell_Instantiate_4D.cppeditsrc/Field/output_Tecplot.cppaddsrc/Field/FieldLinesearch/FieldLinesearch_SpaceTime_impl.heditsrc/pde/NDConvert/PDENDConvertSpaceTime2D.hedittest/sandbox/Solve3D_DGBR2_AD_ST_toy.cppeditsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_AdvectionDiffusion3D_AUDUSUG.cppeditsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion2D.heditsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion3D.heditsrc/Field/output_Tecplot.hsrc/pde/NDConvert/PDENDConvertSpaceTime2D.hsrc/pde/NDConvert/PDENDConvertSpaceTime3D.hsrc/Field/FieldLiftSpaceTime_DG_Cell_Instantiate_4D.cppsrc/Field/FieldLinesearch/FieldLinesearch_SpaceTime.hf9369afa8cd497f6bcd655c4123c1e6467f7fb6f1547356803000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduA few fixes 2019-01-13 00:20:03 -0500f9369afa8cd497f6bcd655c4123c1e6467f7fb6fA few fixeseditsrc/Field/FieldLinesearch/FieldLinesearch_SpaceTime.heditsrc/pde/NDConvert/PDENDConvertSpaceTime2D.heditsrc/pde/NDConvert/PDENDConvertSpaceTime3D.heditsrc/Field/FieldLiftSpaceTime_DG_Cell_Instantiate_4D.cppsrc/Adaptation/MOESS/TAO/MOESS_PX_Optimizer_TAO.cppsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion3D.hsrc/Adaptation/MOESS/TAO/ImpliedMetric_Optimizer_TAO.cpp99f2b0abec5d40782d74ace8f3cdd7a318b910f61547399934000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduCompile fixes 2019-01-13 12:18:54 -050099f2b0abec5d40782d74ace8f3cdd7a318b910f6Compile fixeseditsrc/Adaptation/MOESS/TAO/MOESS_PX_Optimizer_TAO.cppeditsrc/Adaptation/MOESS/TAO/ImpliedMetric_Optimizer_TAO.cppeditsrc/pde/AdvectionDiffusion/PDEAdvectionDiffusion3D.hsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatMul/MatMul_Native_MatrixS_Instantiate.cppsrc/Field/output_Tecplot_impl.hsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_AdvectionDiffusion3D_AUDUSUG.cppsrc/Field/output_Tecplot.cppsrc/Field/FieldData/FieldDataInvMassMatrix_Cell.cppsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion3D.cppsrc/Discretization/DG/DiscretizationDGBR2.cpp9767f35a9413935267ed56016b9704bfcf3abf091547409272000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMore instantiations for 4D 2019-01-13 14:54:32 -05009767f35a9413935267ed56016b9704bfcf3abf09More instantiations for 4Deditsrc/Discretization/DG/DiscretizationDGBR2.cppeditsrc/LinearAlgebra/DenseLinAlg/DynamicSize/MatMul/MatMul_Native_MatrixS_Instantiate.cppeditsrc/Field/FieldData/FieldDataInvMassMatrix_Cell.cppeditsrc/Field/output_Tecplot_impl.heditsrc/Field/output_Tecplot.cppeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Surreal_Instantiate.cppeditsrc/Discretization/DG/DGBR2_Instantiate/AlgebraicEquationSet_DGBR2_AdvectionDiffusion3D_AUDUSUG.cppeditsrc/pde/AdvectionDiffusion/BCAdvectionDiffusion3D.cpptest/unit/Field/XField2D_EdgeLocal_Primal_Split_btest.cpptest/unit/Field/XField2D_ElementLocal_Dual_WholeGrids_btest.cppsrc/Field/XField_Local_Common_Instantiate_2D.cpptest/unit/Field/XField2D_EdgeLocal_Primal_btest.cppsrc/Field/XField_Local_Common.hsrc/Field/XField_ElementLocal_impl.htest/system/LocalSolve/EdgeLocalSolve2D_Primal_Galerkin_Stabilized_Triangle_AD_btest.cpp2b404c65ab6f4fe78c14341e257188dd82ff40761547484594000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduremoved anachronistic definition of primal grid. Primal grid now matches the behavior of the normal DG grids. Unit tests have just been turned off in the meantime 2019-01-14 11:49:54 -05002b404c65ab6f4fe78c14341e257188dd82ff4076removed anachronistic definition of primal grid. Primal grid now matches the behavior of the normal DG grids. Unit tests have just been turned off in the meantimeedittest/unit/Field/XField2D_EdgeLocal_Primal_btest.cppeditsrc/Field/XField_Local_Common.hedittest/system/LocalSolve/EdgeLocalSolve2D_Primal_Galerkin_Stabilized_Triangle_AD_btest.cppedittest/unit/Field/XField2D_ElementLocal_Dual_WholeGrids_btest.cppeditsrc/Field/XField_Local_Common_Instantiate_2D.cppedittest/unit/Field/XField2D_EdgeLocal_Primal_Split_btest.cppeditsrc/Field/XField_ElementLocal_impl.htest/unit/Field/Local/CMakeLists.txtsrc/Field/Local/XField_LocalPatch.hsrc/Field/Local/XField_LocalPatch.cpptest/unit/Field/Local/XField_LocalPatch_Tet_btest.cpptest/unit/Field/Local/XField_LocalPatch_Pentatope_btest.cpp71da8164cdf1ab9bcaf5d4495d71a2f87dac4d2e1547489602000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edumake sure mpi is init'd before calling rank by actually running in parallel 2019-01-14 13:13:22 -050071da8164cdf1ab9bcaf5d4495d71a2f87dac4d2emake sure mpi is init'd before calling rank by actually running in paralleleditsrc/Field/Local/XField_LocalPatch.cppedittest/unit/Field/Local/CMakeLists.txtedittest/unit/Field/Local/XField_LocalPatch_Tet_btest.cppeditsrc/Field/Local/XField_LocalPatch.hedittest/unit/Field/Local/XField_LocalPatch_Pentatope_btest.cpptest/unit/Field/XField2D_ElementLocal_Dual_WholeGrids_btest.cpp8ac37f883c359a8a8d41ccb54b51b1d40ab67d311547489644000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.edurevert back to dual 2019-01-14 13:14:04 -05008ac37f883c359a8a8d41ccb54b51b1d40ab67d31revert back to dualedittest/unit/Field/XField2D_ElementLocal_Dual_WholeGrids_btest.cpptest/system/Timing/XField_LocalSplit_Timing_btest.cpptest/unit/Field/Local/XField_LocalPatch_Triangle_btest.cpptest/unit/Field/Local/XField_LocalPatch_Pentatope_btest.cpptest/unit/Field/Local/XField_LocalPatch_Tet_btest.cpp42d667d4502690efb07afde33359034be70134801547502919000https://acdl.mit.edu/csi/user/pcaplanpcaplanpcaplan@mit.eduifdef SANS_AVRO for tests with CKF triangulation 2019-01-14 16:55:19 -050042d667d4502690efb07afde33359034be7013480ifdef SANS_AVRO for tests with CKF triangulationedittest/unit/Field/Local/XField_LocalPatch_Pentatope_btest.cppedittest/unit/Field/Local/XField_LocalPatch_Tet_btest.cppedittest/unit/Field/Local/XField_LocalPatch_Triangle_btest.cppedittest/system/Timing/XField_LocalSplit_Timing_btest.cpptest/system/Adaptation/SolverInterface_Galerkin_Stabilized_btest.cpp1ac7c1c66899d19b3ac09718d7adce86bbb128a01547511197000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.educhanged to Dual in the system test 2019-01-14 19:13:17 -05001ac7c1c66899d19b3ac09718d7adce86bbb128a0changed to Dual in the system testedittest/system/Adaptation/SolverInterface_Galerkin_Stabilized_btest.cpptest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Line_IBL_airfoilOnly_btest.cpptest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_TwoLayerNewton_btest.cppe54301a82c88be2692ea48c98f330dbc43c67b371547518773000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduattempted to fix nightly tests 2019-01-14 18:19:33 -0800e54301a82c88be2692ea48c98f330dbc43c67b37attempted to fix nightly testsedittest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Line_IBL_airfoilOnly_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_TwoLayerNewton_btest.cpptest/system/Timing/CMakeLists.txttest/system/Timing/XField_LocalSplit_Timing_btest.cppfc56c803468046e21dd654899f04900c5340c1251547520856000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduRelaxed timings, fixed warning 2019-01-14 21:54:16 -0500fc56c803468046e21dd654899f04900c5340c125Relaxed timings, fixed warningedittest/system/Timing/CMakeLists.txtedittest/system/Timing/XField_LocalSplit_Timing_btest.cpptest/system/IO/ErrorOrder/ErrorOrder_1D_HDGAdvective_Advection_MinTest.txttest/system/IO/ErrorOrder/ErrorOrder_1D_HDGAdvective_Advection_FullTest.txttest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Line_IBL_airfoilOnly_btest.cppb425e325d17dd981d40cfe445a2ca67d3698518b1547521801000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduUpdated pyrite files to fix nightly tests 2019-01-14 19:10:01 -0800b425e325d17dd981d40cfe445a2ca67d3698518bUpdated pyrite files to fix nightly testsedittest/system/IO/ErrorOrder/ErrorOrder_1D_HDGAdvective_Advection_MinTest.txtedittest/system/IO/ErrorOrder/ErrorOrder_1D_HDGAdvective_Advection_FullTest.txtedittest/unit/Discretization/HDG/AlgebraicEquationSet_HDGAdvective_Line_IBL_airfoilOnly_btest.cpptest/system/Timing/XField_LocalSplit_Timing_btest.cpp.gitignoretest/system/Timing/CMakeLists.txttest/sandbox/XField_LocalSplit_Timing_toy.cpptest/system/CMakeLists.txt2a6bcd06e369cbc821673cd75aa06bff428e66a91547554807000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMoved timing test into sandbox 2019-01-15 07:20:07 -05002a6bcd06e369cbc821673cd75aa06bff428e66a9Moved timing test into sandboxdeletetest/system/Timing/CMakeLists.txtaddtest/sandbox/XField_LocalSplit_Timing_toy.cppedit.gitignoreedittest/system/CMakeLists.txtdeletetest/system/Timing/XField_LocalSplit_Timing_btest.cppsrc/Meshing/refine/XField3D_refine.cppsrc/Meshing/refine/XField_refine.hsrc/Meshing/refine/refine_ptr.hsrc/Meshing/refine/refine_grid3D.cppsrc/Meshing/refine/refine_defs.hsrc/Meshing/refine/MultiScale_metric.cppsrc/Meshing/refine/MesherInterface_refine.cppsrc/UserInterfaces/capsAIM/markWakeEdges.cppsrc/Meshing/refine/CMakeLists.txt81513d2ed34cb8c7048ef13657209438942b4ac31547561545000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduCleanup of refine interface with auto memory management. 2019-01-15 09:12:25 -050081513d2ed34cb8c7048ef13657209438942b4ac3Cleanup of refine interface with auto memory management.editsrc/Meshing/refine/XField3D_refine.cppaddsrc/Meshing/refine/refine_defs.heditsrc/Meshing/refine/XField_refine.haddsrc/Meshing/refine/refine_ptr.heditsrc/Meshing/refine/CMakeLists.txteditsrc/Meshing/refine/MesherInterface_refine.cppeditsrc/Meshing/refine/MultiScale_metric.cppaddsrc/Meshing/refine/refine_grid3D.cppeditsrc/UserInterfaces/capsAIM/markWakeEdges.cppsrc/Meshing/refine/refine_grid3D.cpp6e9d728169658311c62135b1979b5aea46fd94ab1547591502000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix include 2019-01-15 17:31:42 -05006e9d728169658311c62135b1979b5aea46fd94abFix includeeditsrc/Meshing/refine/refine_grid3D.cppsrc/Field/XField_Local_Common_Instantiate_3D.cpp32ff757c09095f24eddf5f160a3c0f80b297c21a1547670467000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduadded fix to 3D 2019-01-16 15:27:47 -050032ff757c09095f24eddf5f160a3c0f80b297c21aadded fix to 3Deditsrc/Field/XField_Local_Common_Instantiate_3D.cppsrc/Field/XField_Local_Common_Instantiate_4D.cppsrc/Field/XField_Local_Common_Instantiate_3D.cpp7c304b61a6225e06e35e4d2a2c01d8a636216a431547673807000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.eduremoved the separate 4D file, just added an instantiate at the end of 3D 2019-01-16 16:23:27 -05007c304b61a6225e06e35e4d2a2c01d8a636216a43removed the separate 4D file, just added an instantiate at the end of 3Ddeletesrc/Field/XField_Local_Common_Instantiate_4D.cppeditsrc/Field/XField_Local_Common_Instantiate_3D.cpptest/system/IO/ErrorOrder/ErrorOrder_1D_HDGAdvective_Advection_FullTest.txttest/system/Asymptotic/ErrorOrder_1D_HDGAdvective_Advection_btest.cpp9c36e5344141878d6499d22084de57deada6c01d1547676354000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edup=7 led to error close to machine zero, which seemed to cause touble to nightly ErrorOrder test. Cut back p from 7 to 6 2019-01-16 17:05:54 -05009c36e5344141878d6499d22084de57deada6c01dp=7 led to error close to machine zero, which seemed to cause touble to nightly ErrorOrder test. Cut back p from 7 to 6edittest/system/Asymptotic/ErrorOrder_1D_HDGAdvective_Advection_btest.cppedittest/system/IO/ErrorOrder/ErrorOrder_1D_HDGAdvective_Advection_FullTest.txttest/system/IO/ErrorOrder/ErrorOrder_1D_HDGAdvective_Advection_FullTest.txttest/system/Asymptotic/ErrorOrder_1D_HDGAdvective_Advection_btest.cppe5e2a25b81be1f7110241242743540e117d3c3bd1547676653000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.edup=6 still too high for pyrite test for ErrorOrder 2019-01-16 17:10:53 -0500e5e2a25b81be1f7110241242743540e117d3c3bdp=6 still too high for pyrite test for ErrorOrderedittest/system/IO/ErrorOrder/ErrorOrder_1D_HDGAdvective_Advection_FullTest.txtedittest/system/Asymptotic/ErrorOrder_1D_HDGAdvective_Advection_btest.cppsrc/LinearAlgebra/SparseLinAlg/ScalarVector.hsrc/LinearAlgebra/SparseLinAlg/ScalarVector_impl.h0ac404cf49aa867fe3e601965c56eb7bd5eb11ea1547687333000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAttempted to warning "use of zero-allocated memory" 2019-01-16 20:08:53 -05000ac404cf49aa867fe3e601965c56eb7bd5eb11eaAttempted to warning "use of zero-allocated memory"editsrc/LinearAlgebra/SparseLinAlg/ScalarVector.heditsrc/LinearAlgebra/SparseLinAlg/ScalarVector_impl.htest/sandbox/Adapt3D_L2Project_MultiScale_toy.cpptest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cpptest/unit/LinearAlgebra/DenseLinAlg/MatrixS_Trace_btest.cpptest/sandbox/Adapt3D_DG_AD_L2_MOESS_toy.cppsrc/Adaptation/MOESS/SolverInterface_L2Project.hsrc/LinearAlgebra/DenseLinAlg/StaticSize/SVD/MatrixS_SVD_lapack_double.cppsrc/Adaptation/MOESS/ErrorModel_Elemental.hsrc/LinearAlgebra/DenseLinAlg/StaticSize/SVD/MatrixS_SVD_lapack_float.cppsrc/LinearAlgebra/DenseLinAlg/StaticSize/SVD/MatrixS_SVD_lapack_impl.htest/sandbox/Adapt2D_L2Project_MOESS_toy.cpptest/sandbox/Adapt3D_CG_AD_L2_MOESS_toy.cpptest/sandbox/Adapt3D_CG_AD_L2_MultiScale_toy.cppsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_Trace.htest/sandbox/Adapt3D_L2Project_MOESS_toy.cppc8013a4d836f6b0816ced6635740f0705854e34f1547697425000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduSome cleanup in the sandbox. Added 2D L2Project adaptation 2019-01-16 22:57:05 -0500c8013a4d836f6b0816ced6635740f0705854e34fSome cleanup in the sandbox. Added 2D L2Project adaptationedittest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cppeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_Trace.hedittest/unit/LinearAlgebra/DenseLinAlg/MatrixS_Trace_btest.cppeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/SVD/MatrixS_SVD_lapack_float.cppdeletetest/sandbox/Adapt3D_CG_AD_L2_MOESS_toy.cppaddtest/sandbox/Adapt3D_L2Project_MultiScale_toy.cppaddtest/sandbox/Adapt2D_L2Project_MOESS_toy.cppdeletetest/sandbox/Adapt3D_CG_AD_L2_MultiScale_toy.cppedittest/sandbox/Adapt3D_L2Project_MOESS_toy.cppeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/SVD/MatrixS_SVD_lapack_double.cppeditsrc/Adaptation/MOESS/SolverInterface_L2Project.heditsrc/Adaptation/MOESS/ErrorModel_Elemental.hdeletetest/sandbox/Adapt3D_DG_AD_L2_MOESS_toy.cppeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/SVD/MatrixS_SVD_lapack_impl.htest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cpptest/unit/LinearAlgebra/DenseLinAlg/MatrixS_Trace_btest.cppsrc/Field/output_Tecplot_Metric.cppsrc/Adaptation/MeshAdapter.cppsrc/Adaptation/MeshAdapter.hsrc/Adaptation/MOESS/ErrorModel_Elemental.cppexternal/CMakeLists.txtsrc/Field/CMakeLists.txtCMakeInclude/Builds/BuildAVRO.cmaketest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_avro_toy.cppsrc/Meshing/avro/CMakeLists.txtCMakeInclude/Finds/FindAVRO.cmakesrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_Trace.hsrc/Field/output_Tecplot.hsrc/UserInterfaces/LIPSolver.cppscripts/jenkins/SANS_Depend.shb0915d3bc6a10f390d521920e07510af5c7c2f8b1547747890000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded tecplot dump for metric fields. Other small fixes 2019-01-17 12:58:10 -0500b0915d3bc6a10f390d521920e07510af5c7c2f8bAdded tecplot dump for metric fields. Other small fixeseditexternal/CMakeLists.txtedittest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cppeditCMakeInclude/Finds/FindAVRO.cmakeeditsrc/Adaptation/MeshAdapter.heditsrc/Field/output_Tecplot.hedittest/unit/LinearAlgebra/DenseLinAlg/MatrixS_Trace_btest.cppeditsrc/Adaptation/MeshAdapter.cppeditsrc/LinearAlgebra/DenseLinAlg/StaticSize/MatrixS_Trace.heditsrc/UserInterfaces/LIPSolver.cppeditsrc/Adaptation/MOESS/ErrorModel_Elemental.cppeditsrc/Field/CMakeLists.txtaddsrc/Field/output_Tecplot_Metric.cppeditCMakeInclude/Builds/BuildAVRO.cmakedeletetest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_avro_toy.cppeditsrc/Meshing/avro/CMakeLists.txteditscripts/jenkins/SANS_Depend.shsrc/Meshing/Embedding/MesherInterface_Embedding.cpp102eddc70548807d76edf89159381a20b711c47a1547765168000https://acdl.mit.edu/csi/user/ursachiursachiursachi@mit.eduChanged floor to round for generating new 1D mesh 2019-01-17 17:46:08 -0500102eddc70548807d76edf89159381a20b711c47aChanged floor to round for generating new 1D mesheditsrc/Meshing/Embedding/MesherInterface_Embedding.cppsrc/pde/IBL/FluidModels.hsrc/PanelMethod/AlgebraicEquationSet_ProjectToQauxi.hsrc/pde/IBL/PDEIBLUniField.h59861fd50c2f1228166109281cea572c611265971547776707000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduMinor refactoring 2019-01-17 20:58:27 -050059861fd50c2f1228166109281cea572c61126597Minor refactoringeditsrc/PanelMethod/AlgebraicEquationSet_ProjectToQauxi.heditsrc/pde/IBL/FluidModels.heditsrc/pde/IBL/PDEIBLUniField.htest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cppCMakeInclude/Builds/BuildPARMETIS.cmakeCMakeInclude/Builds/BuildTRIANGLE.cmakeCMakeInclude/Builds/BuildBoost.cmaketest/sandbox/Adapt2D_L2Project_MOESS_toy.cppCMakeInclude/Builds/BuildREFINE.cmakeexternal/CMakeLists.txttest/sandbox/Adapt1D_L2Project_MOESS_toy.cppCMakeInclude/Builds/BuildAVRO.cmakeCMakeInclude/Builds/BuildTETGEN.cmake5850c328df81298728c54da86f1c8f59a487888b1547781847000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduCompile fixes and more dependency warning suppressions 2019-01-17 22:24:07 -05005850c328df81298728c54da86f1c8f59a487888bCompile fixes and more dependency warning suppressionseditCMakeInclude/Builds/BuildPARMETIS.cmakeeditCMakeInclude/Builds/BuildTRIANGLE.cmakeeditCMakeInclude/Builds/BuildBoost.cmakeedittest/sandbox/Adapt2D_DGBR2_AD_DoubleBoundaryLayer_toy.cppedittest/sandbox/Adapt2D_L2Project_MOESS_toy.cppeditCMakeInclude/Builds/BuildREFINE.cmakeeditexternal/CMakeLists.txteditCMakeInclude/Builds/BuildAVRO.cmakeaddtest/sandbox/Adapt1D_L2Project_MOESS_toy.cppeditCMakeInclude/Builds/BuildTETGEN.cmakeCMakeInclude/Finds/FindAVRO.cmake26f3396802c19f01e78f5cb3d014ffda62045e701547817854000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdd dl library for avro 2019-01-18 08:24:14 -050026f3396802c19f01e78f5cb3d014ffda62045e70Add dl library for avroeditCMakeInclude/Finds/FindAVRO.cmakesrc/pde/IBL/BCIBLUniField.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_CapturedTransition_btest.cpptest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DGAdv_IBLUniField_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test_FullUpwind.txttest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_forcedTransition0p8244925_naca0004_ne64_p1_Test_CapturedTransition_FullUpwind.txtsrc/pde/IBL/PDEIBLUniField.htest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_forcedTransition0p8244925_naca0004_ne64_p1_Test_CapturedTransition_LFflux.txtsrc/pde/IBL/VarInterpret2D.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cpptest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DGAdv_IBLUniField_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test_LFflux.txttest/unit/pde/IBL/VarInterpret2D_btest.cpp0000dd9fb57e785d576df13c960a8c5a078506621547831180000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduReplaced nt transport equation with G variable as in SciTech paper, although the results are equivalent 2019-01-18 12:06:20 -05000000dd9fb57e785d576df13c960a8c5a07850662Replaced nt transport equation with G variable as in SciTech paper, although the results are equivalenteditsrc/pde/IBL/BCIBLUniField.heditsrc/pde/IBL/PDEIBLUniField.hedittest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DGAdv_IBLUniField_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test_FullUpwind.txteditsrc/pde/IBL/VarInterpret2D.hedittest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_forcedTransition0p8244925_naca0004_ne64_p1_Test_CapturedTransition_LFflux.txtedittest/unit/pde/IBL/VarInterpret2D_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_LamiBL_TurbWakeXfoilLagClosure_btest.cppedittest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_DGAdv_IBLUniField_Panel_laminarBL_turbulentWakexfoillag_naca0004_ne64_p1_Test_LFflux.txtedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBLUniField_Panel_NACA0004_CapturedTransition_btest.cppedittest/system/IO/CodeConsistency/Solve2D_Coupled_4x4_IBLUniField_Panel_forcedTransition0p8244925_naca0004_ne64_p1_Test_CapturedTransition_FullUpwind.txttest/unit/UnitGrids/XField2D_Box_Triangle_Lagrange_X1_btest.cppsrc/Discretization/Galerkin/IntegrandInteriorTrace_Galerkin.htest/sandbox/Solve2D_DGAdvective_AD_RK_ParallelPeriodic_toy.cpptest/unit/UnitGrids/XField2D_Box_Triangle_Lagrange_X1.cpptest/unit/UnitGrids/XField2D_Box_Triangle_Lagrange_X1.hsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective_impl.h138af08a26e33b65e05258d69dc1efcbccf8f2111548081051000https://acdl.mit.edu/csi/user/kug46kug46kug46@psu.eduFiles for parallel periodic XField2D_Box_Triangle_Lagrange (Issues need to be fixed) 2019-01-21 09:30:51 -0500138af08a26e33b65e05258d69dc1efcbccf8f211Files for parallel periodic XField2D_Box_Triangle_Lagrange (Issues need to be fixed)editsrc/Discretization/Galerkin/IntegrandInteriorTrace_Galerkin.hedittest/unit/UnitGrids/XField2D_Box_Triangle_Lagrange_X1.cppaddtest/sandbox/Solve2D_DGAdvective_AD_RK_ParallelPeriodic_toy.cppedittest/unit/UnitGrids/XField2D_Box_Triangle_Lagrange_X1.heditsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective_impl.hedittest/unit/UnitGrids/XField2D_Box_Triangle_Lagrange_X1_btest.cppsrc/pde/IBL/PDEIBLUniField.h883ae67ba2c9d12408501a5eb3646b4fe57ff8f81548171218000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded a layer of abstractions when evaluating fluxes, sources etc. in IBL pde class 2019-01-22 10:33:38 -0500883ae67ba2c9d12408501a5eb3646b4fe57ff8f8Added a layer of abstractions when evaluating fluxes, sources etc. in IBL pde classeditsrc/pde/IBL/PDEIBLUniField.hsrc/pde/IBL/PDEIBLUniField.ha95fbbe004e0c2c2ed3360a6c61206fa9798f5e71548171892000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed formatting... previously went under the radar since vera++ was not installed locally... 2019-01-22 10:44:52 -0500a95fbbe004e0c2c2ed3360a6c61206fa9798f5e7Fixed formatting... previously went under the radar since vera++ was not installed locally...editsrc/pde/IBL/PDEIBLUniField.hsrc/LinearAlgebra/DenseLinAlg/tools/dot.hsrc/tools/SANSTraitsScalar.ha08d5d0b2879d5cdbbacdf67b4f384c2d3dab5f01548174592000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded scalar and dot product fixes for MatrixSymS 2019-01-22 11:29:52 -0500a08d5d0b2879d5cdbbacdf67b4f384c2d3dab5f0Added scalar and dot product fixes for MatrixSymSeditsrc/LinearAlgebra/DenseLinAlg/tools/dot.heditsrc/tools/SANSTraitsScalar.hsrc/pde/IBL/PDEIBLUniField.h1a5b8dd57433cda53a66ffdeeac9e0ffd70921b61548195721000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduEnabled smooth laminar/turbulent blending 2019-01-22 17:22:01 -05001a5b8dd57433cda53a66ffdeeac9e0ffd70921b6Enabled smooth laminar/turbulent blendingeditsrc/pde/IBL/PDEIBLUniField.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_LineSearchNewton_btest.cpptest/system/Asymptotic/ErrorOrder_1D_HDGAdvective_Advection_btest.cpp634b71006ed5e3f56f9d6d1b556e86686eb42a5d1548286306000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed intel errors by relaxing tolerance and reconciling a missing pyrite file specialized for intel MKL 2019-01-23 17:31:46 -0600634b71006ed5e3f56f9d6d1b556e86686eb42a5dFixed intel errors by relaxing tolerance and reconciling a missing pyrite file specialized for intel MKLedittest/system/Asymptotic/ErrorOrder_1D_HDGAdvective_Advection_btest.cppedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_LineSearchNewton_btest.cpptest/sandbox/Adapt2D_L2Project_MOESS_toy.cppefa58dff3f6ce5c806efcdea4beb9404dd214acb1548347268000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdates for 2D L2 Projection sandbox test 2019-01-24 11:27:48 -0500efa58dff3f6ce5c806efcdea4beb9404dd214acbUpdates for 2D L2 Projection sandbox testedittest/sandbox/Adapt2D_L2Project_MOESS_toy.cpptest/sandbox/Adapt1D_L2Project_MOESS_toy.cppb1f74d3514d0a77449872181374557a4b269a4f31548347290000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdates for 1D L2 Projection sandbox test 2019-01-24 11:28:10 -0500b1f74d3514d0a77449872181374557a4b269a4f3Updates for 1D L2 Projection sandbox testedittest/sandbox/Adapt1D_L2Project_MOESS_toy.cppsrc/Adaptation/MOESS/ErrorModel_Elemental.cppsrc/Adaptation/MOESS/ErrorModel.cppsrc/Adaptation/MOESS/MOESS.htest/unit/Adaptation/MOESS/ErrorModel_Elemental_btest.cppCMakeInclude/Builds/BuildNLOPT.cmakesrc/Adaptation/MeshAdapter.cppsrc/Adaptation/MOESS/MOESS.cppsrc/Adaptation/MOESS/CostModel_LogEuclidean.cppsrc/Adaptation/MOESS/ErrorModel_Elemental.hsrc/Adaptation/callMesher1D.cppsrc/Adaptation/MOESS/CostModel_LogEuclidean.htest/sandbox/Adapt1D_DGBR2_L2Project_toy.cpp3cf80ccdf53720d1d6346afa3ad53a3da12f90f71548357380000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded new trace free step matrix error model. Not enabled. 2019-01-24 14:16:20 -05003cf80ccdf53720d1d6346afa3ad53a3da12f90f7Added new trace free step matrix error model. Not enabled.editsrc/Adaptation/MOESS/CostModel_LogEuclidean.cppeditsrc/Adaptation/MOESS/ErrorModel.cppeditsrc/Adaptation/callMesher1D.cppeditsrc/Adaptation/MOESS/MOESS.heditCMakeInclude/Builds/BuildNLOPT.cmakeeditsrc/Adaptation/MeshAdapter.cppeditsrc/Adaptation/MOESS/CostModel_LogEuclidean.heditsrc/Adaptation/MOESS/ErrorModel_Elemental.heditsrc/Adaptation/MOESS/MOESS.cppeditsrc/Adaptation/MOESS/ErrorModel_Elemental.cppedittest/unit/Adaptation/MOESS/ErrorModel_Elemental_btest.cppdeletetest/sandbox/Adapt1D_DGBR2_L2Project_toy.cppsrc/Adaptation/MOESS/NLOPT/MOESS_PX_Optimizer_NLOPT.hsrc/Adaptation/MOESS/NLOPT/MOESS_PX_Optimizer_NLOPT.cppsrc/Field/output_Tecplot_Metric.cppsrc/Meshing/FeFloa/MesherInterface_FeFloa.cpptest/unit/Adaptation/MOESS/MOESS_PX_Optimizer_NLOPT_btest.cppc08d9412a1add367891f7b5a08c485761601f3b71548373499000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduNormalize MOESS optimization with nlopt 2019-01-24 18:44:59 -0500c08d9412a1add367891f7b5a08c485761601f3b7Normalize MOESS optimization with nlopteditsrc/Field/output_Tecplot_Metric.cppeditsrc/Meshing/FeFloa/MesherInterface_FeFloa.cppeditsrc/Adaptation/MOESS/NLOPT/MOESS_PX_Optimizer_NLOPT.cppedittest/unit/Adaptation/MOESS/MOESS_PX_Optimizer_NLOPT_btest.cppeditsrc/Adaptation/MOESS/NLOPT/MOESS_PX_Optimizer_NLOPT.hsrc/Adaptation/MOESS/ErrorModel.cpp56d708c2b0bbfd473a587edec16c07c69c991c721548381578000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixed undefined reference 2019-01-24 20:59:38 -050056d708c2b0bbfd473a587edec16c07c69c991c72Fixed undefined referenceeditsrc/Adaptation/MOESS/ErrorModel.cppsrc/pde/IBL/PDEIBLUniField.hdf403899a1edb8d773cd7016e0d9db894fb064ba1548426989000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduFixed a bug in laminar/turbulent blending function 2019-01-25 09:36:29 -0500df403899a1edb8d773cd7016e0d9db894fb064baFixed a bug in laminar/turbulent blending functioneditsrc/pde/IBL/PDEIBLUniField.hsrc/Adaptation/MOESS/NLOPT/MOESS_PX_Optimizer_NLOPT.hsrc/Adaptation/MOESS/NLOPT/MOESS_PX_Optimizer_NLOPT.cppsrc/Adaptation/MOESS/NLOPT/MOESS_SANS_Optimizer_NLOPT.hsrc/Adaptation/MOESS/NLOPT/MOESS_SANS_Optimizer_NLOPT.cppsrc/Adaptation/MOESS/MOESSParams.hsrc/Adaptation/MOESS/MOESS.hsrc/Adaptation/MOESS/MOESS.cpptest/unit/Adaptation/MOESS/MOESS_SANS_Optimizer_NLOPT_btest.cpp025edd829c97dcd5c161c1c6d6fa56afb82299ff1548460444000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAdded new MOESS optimization without global FrobNorm 2019-01-25 18:54:04 -0500025edd829c97dcd5c161c1c6d6fa56afb82299ffAdded new MOESS optimization without global FrobNormaddsrc/Adaptation/MOESS/NLOPT/MOESS_SANS_Optimizer_NLOPT.cppeditsrc/Adaptation/MOESS/MOESS.cppeditsrc/Adaptation/MOESS/MOESS.heditsrc/Adaptation/MOESS/MOESSParams.heditsrc/Adaptation/MOESS/NLOPT/MOESS_PX_Optimizer_NLOPT.cppeditsrc/Adaptation/MOESS/NLOPT/MOESS_PX_Optimizer_NLOPT.haddsrc/Adaptation/MOESS/NLOPT/MOESS_SANS_Optimizer_NLOPT.haddtest/unit/Adaptation/MOESS/MOESS_SANS_Optimizer_NLOPT_btest.cppsrc/Adaptation/CMakeLists.txtc6e3a8c39a964db283c35b71d686a08509516b9b1548462399000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduForgot CMake file 2019-01-25 19:26:39 -0500c6e3a8c39a964db283c35b71d686a08509516b9bForgot CMake fileeditsrc/Adaptation/CMakeLists.txtCMakeInclude/MakeSummaryFile.cmakeacfdabdecd8fe8d650e2232f2e164a7621abba161548513751000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduSmall fix for cmake summary 2019-01-26 09:42:31 -0500acfdabdecd8fe8d650e2232f2e164a7621abba16Small fix for cmake summaryeditCMakeInclude/MakeSummaryFile.cmaketest/system/LocalSolve/CMakeLists.txttest/system/AnalyticSolve/AnalyticSolve2D_DGAdvective_Triangle_Euler_UniformStream_btest.cppe973828c01006019cd76deec043a3d9a22a2143e1548531527000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduWeekly test fixes 2019-01-26 14:38:47 -0500e973828c01006019cd76deec043a3d9a22a2143eWeekly test fixesedittest/system/AnalyticSolve/AnalyticSolve2D_DGAdvective_Triangle_Euler_UniformStream_btest.cppedittest/system/LocalSolve/CMakeLists.txtsrc/Discretization/Galerkin/IntegrandInteriorTrace_Galerkin_manifold.hsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective_impl.htest/sandbox/Solve2D_DGAdvective_AD_RK_ParallelPeriodic_toy.cpp79227fae5ffd202540abe7062ba2cb34a45c76b81548534899000https://acdl.mit.edu/csi/user/kug46kug46kug46@psu.eduModified AlgEqSet, IntegrandInteriorTrace and 2D DGAdvective toy for Parallel 2D Periodic Grids 2019-01-26 15:34:59 -050079227fae5ffd202540abe7062ba2cb34a45c76b8Modified AlgEqSet, IntegrandInteriorTrace and 2D DGAdvective toy for Parallel 2D Periodic Gridseditsrc/Discretization/Galerkin/IntegrandInteriorTrace_Galerkin_manifold.hedittest/sandbox/Solve2D_DGAdvective_AD_RK_ParallelPeriodic_toy.cppeditsrc/Discretization/DG/AlgebraicEquationSet_DGAdvective_impl.htest/unit/Discretization/DG/AlgebraicEquationSet_DGBR2_Triangle_AD_btest.cpptest/unit/Adaptation/MOESS/TAO/ImpliedMetric_Optimizer_TAO_btest.cpptest/system/Asymptotic/CMakeLists.txt52d60f5d033fd482e9fd8514852220e650c9ac261548603487000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduTowards parallel PETSc/TAO 2019-01-27 10:38:07 -050052d60f5d033fd482e9fd8514852220e650c9ac26Towards parallel PETSc/TAOedittest/system/Asymptotic/CMakeLists.txtedittest/unit/Discretization/DG/AlgebraicEquationSet_DGBR2_Triangle_AD_btest.cppedittest/unit/Adaptation/MOESS/TAO/ImpliedMetric_Optimizer_TAO_btest.cppsrc/pde/IBL/PDEIBL2D.htest/unit/pde/IBL/FluidModels_btest.cppsrc/pde/IBL/FluidModels.htest/unit/pde/IBL/PDEIBL2D_btest.cppsrc/pde/IBL/PDEIBLUniField.h7aff95b9c3cd6a8f1fb371a64641769421145b4c1548603951000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRefactored intermittency calculation 2019-01-27 10:45:51 -05007aff95b9c3cd6a8f1fb371a64641769421145b4cRefactored intermittency calculationedittest/unit/pde/IBL/FluidModels_btest.cppedittest/unit/pde/IBL/PDEIBL2D_btest.cppeditsrc/pde/IBL/PDEIBL2D.heditsrc/pde/IBL/PDEIBLUniField.heditsrc/pde/IBL/FluidModels.hsrc/pde/IBL/PDEIBLUniField.hsrc/PanelMethod/ProjectionToQauxi_IBL.h5ffc9553009ac34d32f87fc3491abfde6ee543841548610735000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduGenerailized Projection to Qauxi to handle blended intermittency. 2019-01-27 12:38:55 -05005ffc9553009ac34d32f87fc3491abfde6ee54384Generailized Projection to Qauxi to handle blended intermittency.editsrc/pde/IBL/PDEIBLUniField.heditsrc/PanelMethod/ProjectionToQauxi_IBL.hsrc/Adaptation/MOESS/CostModel_LogEuclidean.hsrc/Adaptation/MOESS/CostModel_LogEuclidean.cpp0791814ad9ffe34ae9f2f263f07fbab6007046891548620041000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduSome cleanup of logEuclidian cost 2019-01-27 15:14:01 -05000791814ad9ffe34ae9f2f263f07fbab600704689Some cleanup of logEuclidian costeditsrc/Adaptation/MOESS/CostModel_LogEuclidean.heditsrc/Adaptation/MOESS/CostModel_LogEuclidean.cppsrc/Meshing/Embedding/MesherInterface_Embedding.cppsrc/Field/XFieldLine_ElementLocal.cppsrc/BasisFunction/ElementEdges.hsrc/Meshing/XField1D/XField1D.cpp1c8cbc5fd82d3a7f38c0af631e370ed05cf8a3181548626032000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduVarious small fixes 2019-01-27 16:53:52 -05001c8cbc5fd82d3a7f38c0af631e370ed05cf8a318Various small fixeseditsrc/BasisFunction/ElementEdges.heditsrc/Meshing/Embedding/MesherInterface_Embedding.cppeditsrc/Field/XFieldLine_ElementLocal.cppeditsrc/Meshing/XField1D/XField1D.cpptest/unit/Meshing/Embedding/MesherInterface_Embedding_btest.cppb84aa962963988f62c416b6760ace4959d8a8a081548640037000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdated Embedding unit test for quadrature integration 2019-01-27 20:47:17 -0500b84aa962963988f62c416b6760ace4959d8a8a08Updated Embedding unit test for quadrature integrationedittest/unit/Meshing/Embedding/MesherInterface_Embedding_btest.cppsrc/pde/IBL/PDEIBLUniField.h485ecc5b4f6b6d74bab1151fd2c27be21f2e53981548640767000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduReverted to binary intermittency as default 2019-01-27 20:59:27 -0500485ecc5b4f6b6d74bab1151fd2c27be21f2e5398Reverted to binary intermittency as defaulteditsrc/pde/IBL/PDEIBLUniField.htest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_LineSearchNewton_btest.cppsrc/pde/IBL/PDEIBLUniField.hc9a694ecd971e2299f01f4bcdd2558b7640987dd1548688137000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRelaxed tolerance for intel compiler. Restored default to binary intermittency for existing tests 2019-01-28 10:08:57 -0500c9a694ecd971e2299f01f4bcdd2558b7640987ddRelaxed tolerance for intel compiler. Restored default to binary intermittency for existing testsedittest/system/CodeConsistency/Solve2D_Coupled4x4_IBL_Panel_NACA0004_FittedTransition_LineSearchNewton_btest.cppeditsrc/pde/IBL/PDEIBLUniField.htest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBL_Panel_btest.cppdb5b95fa5d1cae5dc01187928ecb4932221562b71548699423000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduRelaxed torleranc for gnu48 2019-01-28 13:17:03 -0500db5b95fa5d1cae5dc01187928ecb4932221562b7Relaxed torleranc for gnu48edittest/unit/Discretization/Block/AlgebraicEquationSet_Block4x4_Auxv_Auxi_CutCellForcedTransitionIBL_Panel_btest.cppsrc/pde/IBL/PDEIBLUniField.h54580f3eed332739bc86f30868def69023e6b02d1548702901000https://acdl.mit.edu/csi/user/shunzshunzshunz@mit.eduAdded regularized point source to accommodate potential co-existence of free and forced transition in the captured transition treatment 2019-01-28 14:15:01 -050054580f3eed332739bc86f30868def69023e6b02dAdded regularized point source to accommodate potential co-existence of free and forced transition in the captured transition treatmenteditsrc/pde/IBL/PDEIBLUniField.htest/sandbox/Adapt3D_L2Project_MOESS_toy.cpp2777440f7e2e10c0b1f0b6665c7fa1287796e11d1548708006000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMinor fix 2019-01-28 15:40:06 -05002777440f7e2e10c0b1f0b6665c7fa1287796e11dMinor fixedittest/sandbox/Adapt3D_L2Project_MOESS_toy.cppsrc/Discretization/Galerkin/JacobianInteriorTrace_Galerkin_Param.htest/sandbox/Solve2D_DGAdvective_AD_RK_ParallelPeriodic_toy.cppsrc/Field/XField_impl.hfee2a8a93f1e2360a2adee3ed5795401ce4d687a1548784113000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFixes towards parallel+periodic 2019-01-29 12:48:33 -0500fee2a8a93f1e2360a2adee3ed5795401ce4d687aFixes towards parallel+periodiceditsrc/Discretization/Galerkin/JacobianInteriorTrace_Galerkin_Param.hedittest/sandbox/Solve2D_DGAdvective_AD_RK_ParallelPeriodic_toy.cppeditsrc/Field/XField_impl.hgithttps://acdl.mit.edu/csi/user/pcaplanpcaplanhttps://acdl.mit.edu/csi/user/hcarsonhcarsonhttps://acdl.mit.edu/csi/user/eam5515eam5515https://acdl.mit.edu/csi/user/ursachiursachihttps://acdl.mit.edu/csi/user/kug46kug46https://acdl.mit.edu/csi/user/shunzshunzhttps://acdl.mit.edu/csi/user/arthuangarthuanghttps://acdl.mit.edu/csi/user/mlaroccamlaroccahttps://acdl.mit.edu/csi/user/galbramcgalbramchttps://acdl.mit.edu/csi/user/cfrontincfrontinhttps://acdl.mit.edu/csi/user/blscblschttps://acdl.mit.edu/csi/user/jzavalajzavalaStarted by upstream project "SANS_Weekly" build number 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ยป release_intel19,reynolds #257257falsefalse257175862SUCCESS1575701527163https://acdl.mit.edu/csi/job/SANS_Weekly/builddir=release_intel19,buildnode=reynolds/257/reynoldstest/unit/Discretization/VMSDBR2/AlgebraicEquationSet_VMSDBR2_Triangle_AD_btest.cpptest/unit/Discretization/VMSDBR2/JacobianFunctionalBoundaryTrace_VMSDBR2_btest.cpp5fc4e65ff0cef9de7ef587ec32c7ee7917b1d7c21573757662000https://acdl.mit.edu/csi/user/arthuangarthuangarthuang@mit.eduunit tests for adjoint 2019-11-14 13:54:22 -05005fc4e65ff0cef9de7ef587ec32c7ee7917b1d7c2unit tests for adjointaddtest/unit/Discretization/VMSDBR2/JacobianFunctionalBoundaryTrace_VMSDBR2_btest.cppedittest/unit/Discretization/VMSDBR2/AlgebraicEquationSet_VMSDBR2_Triangle_AD_btest.cpptest/unit/IO/Adaptation/epic_script_NoGeom_2D.comtest/unit/IO/Adaptation/epic_script_GeomQ1_3D.comtest/unit/IO/Adaptation/epic_script_GeomQ2_3D.comsrc/Meshing/EPIC/MesherInterface_Epic.cpptest/unit/IO/Adaptation/epic_script_GeomQ2_2D.comtest/unit/IO/Adaptation/epic_script_GeomQ1_2D.comf619ff7a202caab000c42a454321d64bdf95a0f91574112330000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduFix for EPIC 2D without geometry 2019-11-18 16:25:30 -0500f619ff7a202caab000c42a454321d64bdf95a0f9Fix for EPIC 2D without geometryedittest/unit/IO/Adaptation/epic_script_GeomQ2_2D.comedittest/unit/IO/Adaptation/epic_script_NoGeom_2D.comedittest/unit/IO/Adaptation/epic_script_GeomQ1_3D.comeditsrc/Meshing/EPIC/MesherInterface_Epic.cppedittest/unit/IO/Adaptation/epic_script_GeomQ1_2D.comedittest/unit/IO/Adaptation/epic_script_GeomQ2_3D.comsrc/Discretization/VMSDBR2/SetAdjointLO_VMSD_BR2.hsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_impl.htest/unit/Discretization/VMSDBR2/JacobianFunctionalBoundaryTrace_VMSDBR2_btest.cpp22922d298f74f200b66b07a30281aca7668760491574202356000https://acdl.mit.edu/csi/user/arthuangarthuangarthuang@mit.eduadding block pivoting to ilu 2019-11-19 17:25:56 -050022922d298f74f200b66b07a30281aca766876049adding block pivoting to iluedittest/unit/Discretization/VMSDBR2/JacobianFunctionalBoundaryTrace_VMSDBR2_btest.cppeditsrc/Discretization/VMSDBR2/SetAdjointLO_VMSD_BR2.heditsrc/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_impl.htest/sandbox/Adapt3D_VMSDBR2_NavierStokes_DeltaWing_Chain_toy.cpp8e63acabc01b4e7cbed6d9c380d7058d0c9362961574208268000https://acdl.mit.edu/csi/user/hcarsonhcarsonhcarson@mit.edua VMSDBR2 version of the DeltaWing Chain toy 2019-11-19 19:04:28 -05008e63acabc01b4e7cbed6d9c380d7058d0c936296a VMSDBR2 version of the DeltaWing Chain toyaddtest/sandbox/Adapt3D_VMSDBR2_NavierStokes_DeltaWing_Chain_toy.cppsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_MatrixD_CRS_Real.cppsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver.hsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_MatrixD_CRS_MatrixS_Instantiate.cpptest/unit/Discretization/VMSDBR2/CMakeLists.txtsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_CRS_MatrixS_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_MatrixD_CRS_MatrixD.cppsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_MatrixBlock_4x4_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_CRS_MatrixD.cppsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_factorize.hsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_impl.hsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_CRS_double.cpptest/unit/Discretization/VMSDBR2/AlgebraicEquationSet_VMSDBR2_Triangle_AD_btest.cpptest/unit/LinearAlgebra/SparseLinAlg/PETSc/PETSc_btest.cppsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_MatrixD_CRS_MatrixD_MatrixS_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_factorize.hsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver.htest/unit/LinearAlgebra/SparseLinAlg/PETSc/PETSc_MDF_Ordering_btest.cppsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_CRS_MatrixD_MatrixS_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_MatrixD_Solve_impl.hsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_MatrixBlock_2x2_Instantiate.cppsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_Solve_impl.h77d129cc219e91f30b042a91298fb4d710a521af1574221144000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduEnable static condensation with MKL 2019-11-19 22:39:04 -050077d129cc219e91f30b042a91298fb4d710a521afEnable static condensation with MKLeditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_factorize.heditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_MatrixD_CRS_Real.cppeditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver.heditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_MatrixBlock_4x4_Instantiate.cppaddsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_MatrixD_Solve_impl.hedittest/unit/LinearAlgebra/SparseLinAlg/PETSc/PETSc_MDF_Ordering_btest.cppedittest/unit/LinearAlgebra/SparseLinAlg/PETSc/PETSc_btest.cppeditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_MatrixD_CRS_MatrixS_Instantiate.cppedittest/unit/Discretization/VMSDBR2/CMakeLists.txteditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_CRS_MatrixD.cppeditsrc/LinearAlgebra/SparseLinAlg/Direct/UMFPACK/UMFPACKSolver_factorize.heditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_impl.heditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_MatrixD_CRS_MatrixD.cppeditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_MatrixBlock_2x2_Instantiate.cppeditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_MatrixD_CRS_MatrixD_MatrixS_Instantiate.cppeditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver.heditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_CRS_MatrixD_MatrixS_Instantiate.cppeditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_CRS_double.cppaddsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_Solve_impl.heditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_CRS_MatrixS_Instantiate.cppedittest/unit/Discretization/VMSDBR2/AlgebraicEquationSet_VMSDBR2_Triangle_AD_btest.cppsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_factorize.h486518eb207970fbf7d04093e77de00686f89af81574222508000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduMissed a static condensation step 2019-11-19 23:01:48 -0500486518eb207970fbf7d04093e77de00686f89af8Missed a static condensation stepeditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_factorize.hsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_MatrixD_CRS_MatrixS_Instantiate.cppfba298756c44f0cf3432baca317a36b0ba58cd8c1574222987000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduAnother MKL static condensation fix 2019-11-19 23:09:47 -0500fba298756c44f0cf3432baca317a36b0ba58cd8cAnother MKL static condensation fixeditsrc/LinearAlgebra/SparseLinAlg/Direct/MKL_PARDISO/MKL_PARDISOSolver_MatrixD_CRS_MatrixS_Instantiate.cpptest/unit/Discretization/VMSDBR2/AlgebraicEquationSet_VMSDBR2_Triangle_AD_btest.cppb3ee3023b0bbc9dc8935f7940f5998aa5f2cc0f31574259457000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduRelaxed tolerance 2019-11-20 09:17:37 -0500b3ee3023b0bbc9dc8935f7940f5998aa5f2cc0f3Relaxed toleranceedittest/unit/Discretization/VMSDBR2/AlgebraicEquationSet_VMSDBR2_Triangle_AD_btest.cppsrc/Meshing/refine/MesherInterface_refine.cpp810a84ecc10bbc3652ec9175199dbfdd029d42ae1575312658000https://acdl.mit.edu/csi/user/galbramcgalbramcgalbramc@mit.eduUpdates for latest refine 2019-12-02 13:50:58 -0500810a84ecc10bbc3652ec9175199dbfdd029d42aeUpdates for latest refineeditsrc/Meshing/refine/MesherInterface_refine.cppgithttps://acdl.mit.edu/csi/user/hcarsonhcarsonhttps://acdl.mit.edu/csi/user/arthuangarthuanghttps://acdl.mit.edu/csi/user/galbramcgalbramc