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Started by user galbramc Running as galbramc [EnvInject] - Loading node environment variables. Building remotely on reynolds in workspace /jenkins/workspace/SANS_avro [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Done The recommended git tool is: NONE using credential 3614a4cf-01de-4393-97de-73734b7dd5a2 > git rev-parse --resolve-git-dir /jenkins/workspace/SANS_avro/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.acdl.url ssh://jenkins@acdl.mit.edu/home/svnroot/SANSproto/ # timeout=10 Pruning obsolete local branches Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 Fetching upstream changes from ssh://jenkins@acdl.mit.edu/home/svnroot/SANSproto/ > git --version # timeout=10 > git --version # 'git version 2.25.1' using GIT_SSH to set credentials > git fetch --tags --force --progress --prune -- ssh://jenkins@acdl.mit.edu/home/svnroot/SANSproto/ +refs/heads/*:refs/remotes/acdl/* # timeout=10 > git rev-parse acdl/develop^{commit} # timeout=10 Checking out Revision 65513c5e44307666de0bc540acf3d9811eeafe5f (acdl/develop) > git config core.sparsecheckout # timeout=10 > git checkout -f 65513c5e44307666de0bc540acf3d9811eeafe5f # timeout=10 Commit message: "Try again to see if tests time out" > git rev-list --no-walk 65513c5e44307666de0bc540acf3d9811eeafe5f # timeout=10 The recommended git tool is: NONE using credential 3614a4cf-01de-4393-97de-73734b7dd5a2 > git rev-parse 65513c5e44307666de0bc540acf3d9811eeafe5f^{commit} # timeout=10 The recommended git tool is: NONE using credential 3614a4cf-01de-4393-97de-73734b7dd5a2 [GitCheckoutListener] Recording commits of 'git ssh://jenkins@acdl.mit.edu/home/svnroot/SANSproto/' [GitCheckoutListener] Found previous build 'SANS_avro #67' that contains recorded Git commits [GitCheckoutListener] -> Starting recording of new commits since '65513c5' [GitCheckoutListener] -> Using head commit '65513c5' as starting point [GitCheckoutListener] -> Git commit decorator could not be created for SCM 'hudson.plugins.git.GitSCM@4282f89c' [GitCheckoutListener] -> No new commits found No emails were triggered. Triggering SANS_avro » release_gnu9,reynolds Triggering SANS_avro » release_gnu11,reynolds Triggering SANS_avro » release_gnu10,reynolds Triggering SANS_avro » release_intel,reynolds Triggering SANS_avro » release_clang,reynolds SANS_avro » release_gnu9,reynolds completed with result SUCCESS SANS_avro » release_gnu11,reynolds completed with result SUCCESS SANS_avro » release_gnu10,reynolds completed with result SUCCESS SANS_avro » release_intel,reynolds completed with result SUCCESS SANS_avro » release_clang,reynolds completed with result SUCCESS Email was triggered for: Success Sending email for trigger: Success Sending email to: allmaras@mit.edu galbramc@mit.edu darmofal@mit.edu pcaplan@mit.edu arthuang@mit.edu savithru@mit.edu hcarson@mit.edu blsc@mit.edu shunz@mit.edu dmw72@psu.edu eam5515@psu.edu kug46@psu.edu ursachi@mit.edu cfrontin@mit.edu jzavala@mit.edu mlarocca@mit.edu ksabo@mit.edu vpr11@mit.edu jta29@psu.edu waligura@mit.edu cwomack@mit.edu deanna.sewell@colorado.edu [PostBuildScript] - [INFO] Executing post build scripts. [SANS_avro] $ /bin/bash -xe /tmp/jenkins3619732038572083242.sh + cd /home/jenkins/util/avro/ + git pull Already up to date. + ./get_submodules.sh From https://github.com/pybind/pybind11 b3ebd11d..c4e29528 master -> origin/master Submodule path 'src/third_party/pybind11': checked out 'c4e295287b74c0b3f0f8a304cdb746ac2bcb37ad' + cd build + git archive --remote=ssh://acdl.mit.edu/master/home/svnroot/SANSproto develop:scripts/jenkins -- jenkins_env.sh + tar -O -xf - + source jenkins_env.sh ++ shopt -s nocasematch +++ pwd ++ dir=/home/jenkins/util/avro/build +++ basename /home/jenkins/util/avro/build ++ builddir=build ++ export AFLR_VERSION=10.17.5 ++ AFLR_VERSION=10.17.5 +++ hostname ++ [[ reynolds == *\r\e\y\n\o\l\d\s* ]] ++ [[ build == *\i\n\t\e\l* ]] ++ [[ build == *\c\o\v\e\r\a\g\e* ]] ++ export PATH=/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin ++ PATH=/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin ++ export LD_LIBRARY_PATH=/usr/lib: ++ LD_LIBRARY_PATH=/usr/lib: ++ export LAPACK_DIR=/home/jenkins/util/lapack/lapack-3.6.1/install ++ LAPACK_DIR=/home/jenkins/util/lapack/lapack-3.6.1/install ++ export ESP_DIR=/home/jenkins/util/ESP/EngSketchPad ++ ESP_DIR=/home/jenkins/util/ESP/EngSketchPad ++ export CAS_DIR=/home/jenkins/util/ESP/OpenCASCADE-7.4.1 ++ CAS_DIR=/home/jenkins/util/ESP/OpenCASCADE-7.4.1 ++ export AFLR_DIR=/home/jenkins/util/AFLR/aflr_lib_10.17.5 ++ AFLR_DIR=/home/jenkins/util/AFLR/aflr_lib_10.17.5 +++ ls -d /home/jenkins/util/PETSc/petsc/install_dir ++ export PETSC_DIR=/home/jenkins/util/PETSc/petsc/install_dir ++ PETSC_DIR=/home/jenkins/util/PETSc/petsc/install_dir ++ export PARMETIS_DIR=/home/jenkins/util/parmetis/parmetis-4.0.3/install ++ PARMETIS_DIR=/home/jenkins/util/parmetis/parmetis-4.0.3/install ++ export METIS_DIR=/home/jenkins/util/parmetis/metis-5.1.0/install ++ METIS_DIR=/home/jenkins/util/parmetis/metis-5.1.0/install ++ export REFINE_DIR=/home/jenkins/util/refine/build_parallel/install ++ REFINE_DIR=/home/jenkins/util/refine/build_parallel/install ++ export AVRO_DIR=/home/jenkins/util/avro ++ AVRO_DIR=/home/jenkins/util/avro ++ '[' -d /home/jenkins/util/NLOPT ']' ++ export PATH=/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin ++ PATH=/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin ++ export PATH=/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin ++ PATH=/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin +++ ls -d /home/jenkins/util/ccache/ccache-4.4/install/bin ++ export PATH=/home/jenkins/util/ccache/ccache-4.4/install/bin:/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin ++ PATH=/home/jenkins/util/ccache/ccache-4.4/install/bin:/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin ++ export PATH=/home/jenkins/util/valgrind/valgrind-3.17.0/install/bin:/home/jenkins/util/ccache/ccache-4.4/install/bin:/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin ++ PATH=/home/jenkins/util/valgrind/valgrind-3.17.0/install/bin:/home/jenkins/util/ccache/ccache-4.4/install/bin:/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin ++ export PATH=/home/jenkins/util/fefloa/bin:/home/jenkins/util/valgrind/valgrind-3.17.0/install/bin:/home/jenkins/util/ccache/ccache-4.4/install/bin:/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin ++ PATH=/home/jenkins/util/fefloa/bin:/home/jenkins/util/valgrind/valgrind-3.17.0/install/bin:/home/jenkins/util/ccache/ccache-4.4/install/bin:/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin ++ [[ build == *\i\n\t\e\l* ]] +++ hostname ++ [[ reynolds == *\c\e\n\t\O\S\7* ]] +++ hostname ++ [[ reynolds == *\r\h\e\l* ]] ++ export Boost_NO_SYSTEM_PATHS=OFF ++ Boost_NO_SYSTEM_PATHS=OFF ++ env + make avro_lib cmake debug_gnu9 -- Build type = debug -- lapack not found -- only supporting WebViewer -- Setting gnu compiler flags -- CPU thread manager = c++11. -- GPU threading not enabled. GPU thread manager = serial. -- Please install kcachegrind for graphical profiling. -- Please install massif-visualizer for graphical heap memory usage. -- pybind11 v2.10.0 dev1 -- Configuring done -- Generating done -- Build files have been written to: /home/jenkins/util/avro/build/debug_gnu9 make -C debug_gnu9 --no-print-directory avro_lib Consolidate compiler generated dependencies of target avro_src [ 0%] Building CXX object src/CMakeFiles/avro_src.dir/include/avro.cpp.o [ 2%] Building CXX object src/CMakeFiles/avro_src.dir/include/avro_params.cpp.o [ 2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/adapt.cpp.o [ 2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/cavity.cpp.o [ 2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/collapses.cpp.o [ 5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/filter.cpp.o /home/jenkins/util/avro/src/lib/adaptation/filter.cpp: In member function ‘void avro::Filter::generateCandidates(avro::Topology<avro::Simplex>&, avro::MetricField<avro::Simplex>&, avro::real_t, avro::Insert<avro::Simplex>&)’: /home/jenkins/util/avro/src/lib/adaptation/filter.cpp:139:11: warning: variable ‘TIME0’ set but not used [-Wunused-but-set-variable] 139 | clock_t TIME0, TIME1; | ^~~~~ /home/jenkins/util/avro/src/lib/adaptation/filter.cpp:139:18: warning: variable ‘TIME1’ set but not used [-Wunused-but-set-variable] 139 | clock_t TIME0, TIME1; | ^~~~~ [ 5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/geometry.cpp.o [ 5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/implied_metric.cpp.o /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp: In instantiation of ‘void avro::ElementImpliedMetric<type>::compute(const std::vector<const double*>&) [with type = avro::Simplex]’: /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:638:16: required from here /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:96:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy] 96 | J_ = J0_*Jeq_; | ~~~^~~~~~~~~~ In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16, from /home/jenkins/util/avro/src/lib/element/simplex.h:19, from /home/jenkins/util/avro/src/lib/element/polytope.h:16, from /home/jenkins/util/avro/src/lib/mesh/field.h:18, from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16, from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10: /home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’ 47 | matd(const matd& A) : | ^~~~ /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:99:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy] 99 | M_ = numerics::inverse( JJt ); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16, from /home/jenkins/util/avro/src/lib/element/simplex.h:19, from /home/jenkins/util/avro/src/lib/element/polytope.h:16, from /home/jenkins/util/avro/src/lib/mesh/field.h:18, from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16, from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10: /home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’ 47 | matd(const matd& A) : | ^~~~ /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp: In instantiation of ‘void avro::ElementImpliedMetric<type>::compute(const avro::Points&, const index_t*, avro::index_t) [with type = avro::Simplex; avro::index_t = long unsigned int]’: /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:638:16: required from here /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:110:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy] 110 | J_ = J0_*Jeq_; | ~~~^~~~~~~~~~ In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16, from /home/jenkins/util/avro/src/lib/element/simplex.h:19, from /home/jenkins/util/avro/src/lib/element/polytope.h:16, from /home/jenkins/util/avro/src/lib/mesh/field.h:18, from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16, from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10: /home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’ 47 | matd(const matd& A) : | ^~~~ /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:113:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy] 113 | M_ = numerics::inverse( JJt ); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16, from /home/jenkins/util/avro/src/lib/element/simplex.h:19, from /home/jenkins/util/avro/src/lib/element/polytope.h:16, from /home/jenkins/util/avro/src/lib/mesh/field.h:18, from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16, from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10: /home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’ 47 | matd(const matd& A) : | ^~~~ /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp: In instantiation of ‘void avro::ElementImpliedMetric<type>::inverse(const avro::Points&, const index_t*, avro::index_t) [with type = avro::Simplex; avro::index_t = long unsigned int]’: /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:638:16: required from here /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:125:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy] 125 | J_ = J0_*Jeq_; | ~~~^~~~~~~~~~ In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16, from /home/jenkins/util/avro/src/lib/element/simplex.h:19, from /home/jenkins/util/avro/src/lib/element/polytope.h:16, from /home/jenkins/util/avro/src/lib/mesh/field.h:18, from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16, from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10: /home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’ 47 | matd(const matd& A) : | ^~~~ /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:126:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy] 126 | M_ = J_*numerics::transpose(J_); // no inverse | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16, from /home/jenkins/util/avro/src/lib/element/simplex.h:19, from /home/jenkins/util/avro/src/lib/element/polytope.h:16, from /home/jenkins/util/avro/src/lib/mesh/field.h:18, from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16, from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10: /home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’ 47 | matd(const matd& A) : | ^~~~ [ 5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/insertions.cpp.o [ 8%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/metric.cpp.o /home/jenkins/util/avro/src/lib/adaptation/metric.cpp: In instantiation of ‘avro::real_t avro::MetricField<type>::length(avro::index_t, avro::index_t) const [with type = avro::Simplex; avro::real_t = double; avro::index_t = long unsigned int]’: /home/jenkins/util/avro/src/lib/adaptation/metric.cpp:708:16: required from here /home/jenkins/util/avro/src/lib/adaptation/metric.cpp:146:10: warning: variable ‘dim’ set but not used [-Wunused-but-set-variable] 146 | coord_t dim = topology_.points().dim(); | ^~~ [ 8%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/parallel.cpp.o [ 8%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/primitive.cpp.o [ 8%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/properties.cpp.o [ 8%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/smoothing.cpp.o [ 11%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/swaps.cpp.o [ 11%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/crypto.cpp.o [ 11%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/error.cpp.o [ 11%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/kdtree.cpp.o [ 13%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/nearest_neighbours.cpp.o [ 13%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_cpu.cpp.o [ 13%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_gpu.cpp.o [ 13%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_mpi.cpp.o [ 16%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/tools.cpp.o [ 16%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/basis.cpp.o [ 16%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_line.cpp.o [ 16%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_pentatope.cpp.o [ 19%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_tetrahedron.cpp.o [ 19%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_triangle.cpp.o [ 19%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/element.cpp.o [ 19%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_line.cpp.o [ 19%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_nodes.cpp.o [ 22%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_pentatope.cpp.o [ 22%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_tetrahedron.cpp.o [ 22%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_triangle.cpp.o [ 22%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_line.cpp.o /home/jenkins/util/avro/src/lib/element/legendre_line.cpp: In static member function ‘static void avro::Legendre<avro::Simplex, N, P>::eval(const double*, double*) [with int N = 1; int P = 0]’: /home/jenkins/util/avro/src/lib/element/legendre_line.cpp:24:10: warning: unused variable ‘s’ [-Wunused-variable] 24 | real_t s = x[0]; | ^ [ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_pentatope.cpp.o [ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_tetrahedron.cpp.o [ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_triangle.cpp.o [ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/polytope.cpp.o [ 27%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/quadrature.cpp.o /home/jenkins/util/avro/src/lib/element/quadrature.cpp: In instantiation of ‘void avro::QuadratureStore<type>::build() [with type = avro::Simplex]’: /home/jenkins/util/avro/src/lib/element/quadrature.cpp:38:3: required from ‘avro::QuadratureStore<type>::QuadratureStore(avro::BasisFunctionCategory) [with type = avro::Simplex]’ /home/jenkins/util/avro/src/lib/element/quadrature.cpp:26:83: required from here /home/jenkins/util/avro/src/lib/element/quadrature.cpp:93:16: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy] 93 | B[d] = matd<real_t>( nb_basis , quad.nb() ); In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16, from /home/jenkins/util/avro/src/lib/element/quadrature.cpp:14: /home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’ 47 | matd(const matd& A) : | ^~~~ /home/jenkins/util/avro/src/lib/element/quadrature.cpp:114:16: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy] 114 | B[d] = Ainv*B[d]; // convert modal basis to nodal basis In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16, from /home/jenkins/util/avro/src/lib/element/quadrature.cpp:14: /home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’ 47 | matd(const matd& A) : | ^~~~ [ 27%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/reference.cpp.o [ 27%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/simplex.cpp.o /home/jenkins/util/avro/src/lib/element/simplex.cpp: In member function ‘void avro::Simplex::precalculate()’: /home/jenkins/util/avro/src/lib/element/simplex.cpp:120:25: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 120 | for (index_t k = 0; k < number_+1; k++) | ~~^~~~~~~~~~~ [ 27%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/trace2cell.cpp.o [ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/body.cpp.o [ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/entity.cpp.o [ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/model.cpp.o [ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/tessellation.cpp.o [ 33%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/body.cpp.o [ 33%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/context.cpp.o [ 33%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/data.cpp.o [ 33%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/model.cpp.o [ 33%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/object.cpp.o [ 36%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/psc/facet.cpp.o [ 36%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/psc/node.cpp.o [ 36%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/psc/object.cpp.o [ 36%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/application.cpp.o [ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/bsp.cpp.o [ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/camera.cpp.o [ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/colormap.cpp.o [ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/gl.cpp.o [ 41%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/gui.cpp.o /home/jenkins/util/avro/src/lib/graphics/gui.cpp:71:1: warning: ‘std::vector<const char*> avro::graphics::convert_to_char(const std::vector<std::__cxx11::basic_string<char> >&)’ defined but not used [-Wunused-function] 71 | convert_to_char( const std::vector<std::string>& s ) { | ^~~~~~~~~~~~~~~ [ 41%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/math.cpp.o [ 41%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/opengl.cpp.o /home/jenkins/util/avro/src/lib/graphics/opengl.cpp: In member function ‘void avro::graphics::Window::select_colormap(const string&)’: /home/jenkins/util/avro/src/lib/graphics/opengl.cpp:475:11: warning: unused variable ‘ncolor’ [-Wunused-variable] 475 | index_t ncolor = 256*3; | ^~~~~~ /home/jenkins/util/avro/src/lib/graphics/opengl.cpp: In member function ‘void avro::graphics::ClipPlane::write()’: /home/jenkins/util/avro/src/lib/graphics/opengl.cpp:418:28: warning: ‘buffers[0]’ is used uninitialized in this function [-Wuninitialized] 418 | point_buffer_ = buffers[0]; | ~~~~~~~~~^ /home/jenkins/util/avro/src/lib/graphics/opengl.cpp:419:28: warning: ‘buffers[1]’ is used uninitialized in this function [-Wuninitialized] 419 | index_buffer_ = buffers[1]; | ~~~~~~~~~^ /home/jenkins/util/avro/src/lib/graphics/opengl.cpp: In member function ‘void avro::graphics::Window::select_colormap(const string&)’: /home/jenkins/util/avro/src/lib/graphics/opengl.cpp:486:25: warning: ‘colormap_texture’ may be used uninitialized in this function [-Wmaybe-uninitialized] 486 | manager_.track_texture(colormap_texture); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /home/jenkins/util/avro/src/lib/graphics/opengl.cpp:487:24: warning: ‘colormap_buffer’ may be used uninitialized in this function [-Wmaybe-uninitialized] 487 | manager_.track_buffer(colormap_buffer); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ [ 41%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/plot.cpp.o [ 44%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/postscript.cpp.o [ 44%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/primitives.cpp.o [ 44%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/raytracer.cpp.o /home/jenkins/util/avro/src/lib/graphics/raytracer.cpp: In member function ‘void avro::graphics::Canvas::convert()’: /home/jenkins/util/avro/src/lib/graphics/raytracer.cpp:97:25: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 97 | for (index_t i = 0; i < height_; i++) | ~~^~~~~~~~~ /home/jenkins/util/avro/src/lib/graphics/raytracer.cpp:98:25: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 98 | for (index_t j = 0; j < width_; j++) | ~~^~~~~~~~ /home/jenkins/util/avro/src/lib/graphics/raytracer.cpp: In member function ‘void avro::graphics::RayTracer::render()’: /home/jenkins/util/avro/src/lib/graphics/raytracer.cpp:435:27: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 435 | for (index_t j = 0; j < canvas_.width(); j++) { | ~~^~~~~~~~~~~~~~~~~ [ 44%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/shader.cpp.o [ 44%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/vao.cpp.o [ 47%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/vao_polytope.cpp.o /home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp: In member function ‘void avro::graphics::PolytopeDecomposition::triangulate()’: /home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp:136:11: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 136 | for (index_t j = 0; j < coordinates_.size()/3; j++) | ^~~ /home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp:139:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 139 | for (index_t j = 0; j < output.numberofpoints; j++) | ^~~ /home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp:139:35: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 139 | for (index_t j = 0; j < output.numberofpoints; j++) | ~~^~~~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/webglpp.cpp.o [ 47%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/websockets.cpp.o [ 47%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/window.cpp.o [ 50%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/ckf.cpp.o [ 50%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/csm.cpp.o [ 50%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/egads.cpp.o [ 50%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/eps.cpp.o [ 52%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/factory.cpp.o [ 52%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/field.cpp.o [ 52%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/library.cpp.o [ 52%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/meshb.cpp.o [ 55%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/metric.cpp.o [ 55%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/obj.cpp.o [ 55%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/plots.cpp.o [ 55%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/samples.cpp.o [ 55%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/spacetime.cpp.o [ 58%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/tesseract.cpp.o [ 58%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/boundary.cpp.o [ 58%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/builder.cpp.o [ 58%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/decomposition.cpp.o [ 61%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/dof.cpp.o [ 61%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/facets.cpp.o [ 61%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/field.cpp.o [ 61%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/interpolation.cpp.o [ 63%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/inverse.cpp.o [ 63%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/mesh.cpp.o [ 63%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/mpi.cpp.o [ 63%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/neighbours.cpp.o [ 66%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/partition.cpp.o [ 66%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/points.cpp.o [ 66%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/search.cpp.o [ 66%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/topology.cpp.o [ 69%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/topology_polytope.cpp.o [ 69%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/topology_simplex.cpp.o [ 69%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/functions.cpp.o [ 69%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/geometry.cpp.o [ 69%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/linear_algebra.cpp.o [ 72%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/mat.cpp.o [ 72%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates.cpp.o [ 72%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/sym.cpp.o [ 72%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/tools.cpp.o [ 75%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/vec.cpp.o [ 75%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/orient4d.cpp.o [ 75%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side1_exact.cpp.o [ 75%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side2_exact.cpp.o [ 77%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side3_exact.cpp.o [ 77%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side4_exact.cpp.o [ 77%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side5_exact.cpp.o [ 77%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_10d.cpp.o [ 80%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_3d.cpp.o [ 80%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_4d.cpp.o [ 80%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_5d.cpp.o [ 80%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_6d.cpp.o [ 80%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_7d.cpp.o [ 83%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_8d.cpp.o [ 83%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_9d.cpp.o [ 83%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/bowyer_watson.cpp.o [ 83%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/cell.cpp.o [ 86%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/cell_nd.cpp.o [ 86%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/diagram.cpp.o /home/jenkins/util/avro/src/lib/voronoi/diagram.cpp: In member function ‘void avro::voronoi::PowerDiagram::add_cell(const avro::voronoi::Cell&, bool)’: /home/jenkins/util/avro/src/lib/voronoi/diagram.cpp:187:7: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 187 | for (index_t i = 0; i < polytope.size(); i++) | ^~~ /home/jenkins/util/avro/src/lib/voronoi/diagram.cpp:189:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 189 | add( polytope.data() , polytope.size() ); | ^~~ [ 86%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/facets.cpp.o [ 86%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/optimal_transport.cpp.o [ 88%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/particles.cpp.o [ 88%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/vertex.cpp.o [ 88%] Building CXX object src/CMakeFiles/avro_src.dir/bin/adapt.cpp.o [ 88%] Building CXX object src/CMakeFiles/avro_src.dir/bin/animate.cpp.o [ 91%] Building CXX object src/CMakeFiles/avro_src.dir/bin/arguments.cpp.o [ 91%] Building CXX object src/CMakeFiles/avro_src.dir/bin/check.cpp.o /home/jenkins/util/avro/src/bin/check.cpp: In function ‘int avro::programs::check(int, const char**)’: /home/jenkins/util/avro/src/bin/check.cpp:66:19: warning: unused variable ‘topology’ [-Wunused-variable] 66 | Topology<type>& topology = *static_cast<Topology<type>*>(ptopology.get()); | ^~~~~~~~ [ 91%] Building CXX object src/CMakeFiles/avro_src.dir/bin/conformity.cpp.o [ 91%] Building CXX object src/CMakeFiles/avro_src.dir/bin/conformityp.cpp.o [ 91%] Building CXX object src/CMakeFiles/avro_src.dir/bin/convert.cpp.o [ 94%] Building CXX object src/CMakeFiles/avro_src.dir/bin/image.cpp.o [ 94%] Building CXX object src/CMakeFiles/avro_src.dir/bin/plot.cpp.o [ 94%] Built target avro_src Consolidate compiler generated dependencies of target avro_third_party [ 94%] Building CXX object src/third_party/CMakeFiles/avro_third_party.dir/tetgen1.5.0/predicates.cxx.o [ 97%] Building CXX object src/third_party/CMakeFiles/avro_third_party.dir/tetgen1.5.0/tetgen.cxx.o [ 97%] Building C object src/third_party/CMakeFiles/avro_third_party.dir/libmeshb/libmeshb7.c.o [ 97%] Building C object src/third_party/CMakeFiles/avro_third_party.dir/triangle/triangle.c.o [ 97%] Building CXX object src/third_party/CMakeFiles/avro_third_party.dir/geogram/kd_tree.cpp.o [100%] Building C object src/third_party/CMakeFiles/avro_third_party.dir/geogram/nl.c.o [100%] Building CXX object src/third_party/CMakeFiles/avro_third_party.dir/geogram/nn_search.cpp.o [100%] Built target avro_third_party [100%] Linking CXX static library ../lib/libavro.a [100%] Built target avro_static [100%] Linking CXX shared library ../lib/libavro.so [100%] Built target avro_shared [100%] Built target avro_lib cmake debug_gnu10 -- Build type = debug -- The C compiler identification is GNU 9.4.0 -- The CXX compiler identification is GNU 9.4.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- lapack not found -- only supporting WebViewer -- Setting gnu compiler flags -- CPU thread manager = c++11. -- GPU threading not enabled. GPU thread manager = serial. -- Please install kcachegrind for graphical profiling. -- Please install massif-visualizer for graphical heap memory usage. -- pybind11 v2.10.0 dev1 -- Configuring done -- Generating done -- Build files have been written to: /home/jenkins/util/avro/build/debug_gnu10 make -C debug_gnu10 --no-print-directory avro_lib Consolidate compiler generated dependencies of target avro_src [ 0%] Building CXX object src/CMakeFiles/avro_src.dir/include/avro.cpp.o [ 2%] Building CXX object src/CMakeFiles/avro_src.dir/include/avro_params.cpp.o [ 2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/adapt.cpp.o [ 2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/cavity.cpp.o [ 2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/collapses.cpp.o [ 5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/filter.cpp.o /home/jenkins/util/avro/src/lib/adaptation/filter.cpp: In member function ‘void avro::Filter::generateCandidates(avro::Topology<avro::Simplex>&, avro::MetricField<avro::Simplex>&, avro::real_t, avro::Insert<avro::Simplex>&)’: /home/jenkins/util/avro/src/lib/adaptation/filter.cpp:139:11: warning: variable ‘TIME0’ set but not used [-Wunused-but-set-variable] 139 | clock_t TIME0, TIME1; | ^~~~~ /home/jenkins/util/avro/src/lib/adaptation/filter.cpp:139:18: warning: variable ‘TIME1’ set but not used [-Wunused-but-set-variable] 139 | clock_t TIME0, TIME1; | ^~~~~ [ 5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/geometry.cpp.o [ 5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/implied_metric.cpp.o /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp: In instantiation of ‘void avro::ElementImpliedMetric<type>::compute(const std::vector<const double*>&) [with type = avro::Simplex]’: /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:638:16: required from here /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:96:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy] 96 | J_ = J0_*Jeq_; | ~~~^~~~~~~~~~ In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16, from /home/jenkins/util/avro/src/lib/element/simplex.h:19, from /home/jenkins/util/avro/src/lib/element/polytope.h:16, from /home/jenkins/util/avro/src/lib/mesh/field.h:18, from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16, from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10: /home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’ 47 | matd(const matd& A) : | ^~~~ /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:99:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy] 99 | M_ = numerics::inverse( JJt ); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16, from /home/jenkins/util/avro/src/lib/element/simplex.h:19, from /home/jenkins/util/avro/src/lib/element/polytope.h:16, from /home/jenkins/util/avro/src/lib/mesh/field.h:18, from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16, from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10: /home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’ 47 | matd(const matd& A) : | ^~~~ /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp: In instantiation of ‘void avro::ElementImpliedMetric<type>::compute(const avro::Points&, const index_t*, avro::index_t) [with type = avro::Simplex; avro::index_t = long unsigned int]’: /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:638:16: required from here /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:110:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy] 110 | J_ = J0_*Jeq_; | ~~~^~~~~~~~~~ In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16, from /home/jenkins/util/avro/src/lib/element/simplex.h:19, from /home/jenkins/util/avro/src/lib/element/polytope.h:16, from /home/jenkins/util/avro/src/lib/mesh/field.h:18, from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16, from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10: /home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’ 47 | matd(const matd& A) : | ^~~~ /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:113:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy] 113 | M_ = numerics::inverse( JJt ); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16, from /home/jenkins/util/avro/src/lib/element/simplex.h:19, from /home/jenkins/util/avro/src/lib/element/polytope.h:16, from /home/jenkins/util/avro/src/lib/mesh/field.h:18, from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16, from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10: /home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’ 47 | matd(const matd& A) : | ^~~~ /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp: In instantiation of ‘void avro::ElementImpliedMetric<type>::inverse(const avro::Points&, const index_t*, avro::index_t) [with type = avro::Simplex; avro::index_t = long unsigned int]’: /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:638:16: required from here /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:125:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy] 125 | J_ = J0_*Jeq_; | ~~~^~~~~~~~~~ In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16, from /home/jenkins/util/avro/src/lib/element/simplex.h:19, from /home/jenkins/util/avro/src/lib/element/polytope.h:16, from /home/jenkins/util/avro/src/lib/mesh/field.h:18, from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16, from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10: /home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’ 47 | matd(const matd& A) : | ^~~~ /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:126:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy] 126 | M_ = J_*numerics::transpose(J_); // no inverse | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16, from /home/jenkins/util/avro/src/lib/element/simplex.h:19, from /home/jenkins/util/avro/src/lib/element/polytope.h:16, from /home/jenkins/util/avro/src/lib/mesh/field.h:18, from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16, from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10: /home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’ 47 | matd(const matd& A) : | ^~~~ [ 5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/insertions.cpp.o [ 8%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/metric.cpp.o /home/jenkins/util/avro/src/lib/adaptation/metric.cpp: In instantiation of ‘avro::real_t avro::MetricField<type>::length(avro::index_t, avro::index_t) const [with type = avro::Simplex; avro::real_t = double; avro::index_t = long unsigned int]’: /home/jenkins/util/avro/src/lib/adaptation/metric.cpp:708:16: required from here /home/jenkins/util/avro/src/lib/adaptation/metric.cpp:146:10: warning: variable ‘dim’ set but not used [-Wunused-but-set-variable] 146 | coord_t dim = topology_.points().dim(); | ^~~ [ 8%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/parallel.cpp.o [ 8%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/primitive.cpp.o [ 8%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/properties.cpp.o [ 8%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/smoothing.cpp.o [ 11%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/swaps.cpp.o [ 11%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/crypto.cpp.o [ 11%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/error.cpp.o [ 11%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/kdtree.cpp.o [ 13%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/nearest_neighbours.cpp.o [ 13%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_cpu.cpp.o [ 13%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_gpu.cpp.o [ 13%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_mpi.cpp.o [ 16%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/tools.cpp.o [ 16%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/basis.cpp.o [ 16%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_line.cpp.o [ 16%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_pentatope.cpp.o [ 19%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_tetrahedron.cpp.o [ 19%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_triangle.cpp.o [ 19%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/element.cpp.o [ 19%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_line.cpp.o [ 19%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_nodes.cpp.o [ 22%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_pentatope.cpp.o [ 22%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_tetrahedron.cpp.o [ 22%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_triangle.cpp.o [ 22%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_line.cpp.o /home/jenkins/util/avro/src/lib/element/legendre_line.cpp: In static member function ‘static void avro::Legendre<avro::Simplex, N, P>::eval(const double*, double*) [with int N = 1; int P = 0]’: /home/jenkins/util/avro/src/lib/element/legendre_line.cpp:24:10: warning: unused variable ‘s’ [-Wunused-variable] 24 | real_t s = x[0]; | ^ [ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_pentatope.cpp.o [ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_tetrahedron.cpp.o [ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_triangle.cpp.o [ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/polytope.cpp.o [ 27%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/quadrature.cpp.o /home/jenkins/util/avro/src/lib/element/quadrature.cpp: In instantiation of ‘void avro::QuadratureStore<type>::build() [with type = avro::Simplex]’: /home/jenkins/util/avro/src/lib/element/quadrature.cpp:38:3: required from ‘avro::QuadratureStore<type>::QuadratureStore(avro::BasisFunctionCategory) [with type = avro::Simplex]’ /home/jenkins/util/avro/src/lib/element/quadrature.cpp:26:83: required from here /home/jenkins/util/avro/src/lib/element/quadrature.cpp:93:16: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy] 93 | B[d] = matd<real_t>( nb_basis , quad.nb() ); In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16, from /home/jenkins/util/avro/src/lib/element/quadrature.cpp:14: /home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’ 47 | matd(const matd& A) : | ^~~~ /home/jenkins/util/avro/src/lib/element/quadrature.cpp:114:16: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy] 114 | B[d] = Ainv*B[d]; // convert modal basis to nodal basis In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16, from /home/jenkins/util/avro/src/lib/element/quadrature.cpp:14: /home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’ 47 | matd(const matd& A) : | ^~~~ [ 27%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/reference.cpp.o [ 27%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/simplex.cpp.o /home/jenkins/util/avro/src/lib/element/simplex.cpp: In member function ‘void avro::Simplex::precalculate()’: /home/jenkins/util/avro/src/lib/element/simplex.cpp:120:25: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 120 | for (index_t k = 0; k < number_+1; k++) | ~~^~~~~~~~~~~ [ 27%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/trace2cell.cpp.o [ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/body.cpp.o [ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/entity.cpp.o [ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/model.cpp.o [ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/tessellation.cpp.o [ 33%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/body.cpp.o [ 33%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/context.cpp.o [ 33%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/data.cpp.o [ 33%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/model.cpp.o [ 33%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/object.cpp.o [ 36%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/psc/facet.cpp.o [ 36%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/psc/node.cpp.o [ 36%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/psc/object.cpp.o [ 36%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/application.cpp.o [ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/bsp.cpp.o [ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/camera.cpp.o [ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/colormap.cpp.o [ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/gl.cpp.o [ 41%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/gui.cpp.o /home/jenkins/util/avro/src/lib/graphics/gui.cpp:71:1: warning: ‘std::vector<const char*> avro::graphics::convert_to_char(const std::vector<std::__cxx11::basic_string<char> >&)’ defined but not used [-Wunused-function] 71 | convert_to_char( const std::vector<std::string>& s ) { | ^~~~~~~~~~~~~~~ [ 41%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/math.cpp.o [ 41%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/opengl.cpp.o /home/jenkins/util/avro/src/lib/graphics/opengl.cpp: In member function ‘void avro::graphics::Window::select_colormap(const string&)’: /home/jenkins/util/avro/src/lib/graphics/opengl.cpp:475:11: warning: unused variable ‘ncolor’ [-Wunused-variable] 475 | index_t ncolor = 256*3; | ^~~~~~ /home/jenkins/util/avro/src/lib/graphics/opengl.cpp: In member function ‘void avro::graphics::ClipPlane::write()’: /home/jenkins/util/avro/src/lib/graphics/opengl.cpp:418:28: warning: ‘buffers[0]’ is used uninitialized in this function [-Wuninitialized] 418 | point_buffer_ = buffers[0]; | ~~~~~~~~~^ /home/jenkins/util/avro/src/lib/graphics/opengl.cpp:419:28: warning: ‘buffers[1]’ is used uninitialized in this function [-Wuninitialized] 419 | index_buffer_ = buffers[1]; | ~~~~~~~~~^ /home/jenkins/util/avro/src/lib/graphics/opengl.cpp: In member function ‘void avro::graphics::Window::select_colormap(const string&)’: /home/jenkins/util/avro/src/lib/graphics/opengl.cpp:486:25: warning: ‘colormap_texture’ may be used uninitialized in this function [-Wmaybe-uninitialized] 486 | manager_.track_texture(colormap_texture); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /home/jenkins/util/avro/src/lib/graphics/opengl.cpp:487:24: warning: ‘colormap_buffer’ may be used uninitialized in this function [-Wmaybe-uninitialized] 487 | manager_.track_buffer(colormap_buffer); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ [ 41%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/plot.cpp.o [ 44%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/postscript.cpp.o [ 44%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/primitives.cpp.o [ 44%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/raytracer.cpp.o /home/jenkins/util/avro/src/lib/graphics/raytracer.cpp: In member function ‘void avro::graphics::Canvas::convert()’: /home/jenkins/util/avro/src/lib/graphics/raytracer.cpp:97:25: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 97 | for (index_t i = 0; i < height_; i++) | ~~^~~~~~~~~ /home/jenkins/util/avro/src/lib/graphics/raytracer.cpp:98:25: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 98 | for (index_t j = 0; j < width_; j++) | ~~^~~~~~~~ /home/jenkins/util/avro/src/lib/graphics/raytracer.cpp: In member function ‘void avro::graphics::RayTracer::render()’: /home/jenkins/util/avro/src/lib/graphics/raytracer.cpp:435:27: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 435 | for (index_t j = 0; j < canvas_.width(); j++) { | ~~^~~~~~~~~~~~~~~~~ [ 44%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/shader.cpp.o [ 44%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/vao.cpp.o [ 47%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/vao_polytope.cpp.o /home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp: In member function ‘void avro::graphics::PolytopeDecomposition::triangulate()’: /home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp:136:11: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 136 | for (index_t j = 0; j < coordinates_.size()/3; j++) | ^~~ /home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp:139:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 139 | for (index_t j = 0; j < output.numberofpoints; j++) | ^~~ /home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp:139:35: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 139 | for (index_t j = 0; j < output.numberofpoints; j++) | ~~^~~~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/webglpp.cpp.o [ 47%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/websockets.cpp.o [ 47%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/window.cpp.o [ 50%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/ckf.cpp.o [ 50%] Building CXX object 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66%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/points.cpp.o [ 66%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/search.cpp.o [ 66%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/topology.cpp.o [ 69%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/topology_polytope.cpp.o [ 69%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/topology_simplex.cpp.o [ 69%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/functions.cpp.o [ 69%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/geometry.cpp.o [ 69%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/linear_algebra.cpp.o [ 72%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/mat.cpp.o [ 72%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates.cpp.o [ 72%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/sym.cpp.o [ 72%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/tools.cpp.o [ 75%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/vec.cpp.o [ 75%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/orient4d.cpp.o [ 75%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side1_exact.cpp.o [ 75%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side2_exact.cpp.o [ 77%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side3_exact.cpp.o [ 77%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side4_exact.cpp.o [ 77%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side5_exact.cpp.o [ 77%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_10d.cpp.o [ 80%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_3d.cpp.o [ 80%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_4d.cpp.o [ 80%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_5d.cpp.o [ 80%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_6d.cpp.o [ 80%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_7d.cpp.o [ 83%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_8d.cpp.o [ 83%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_9d.cpp.o [ 83%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/bowyer_watson.cpp.o [ 83%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/cell.cpp.o [ 86%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/cell_nd.cpp.o [ 86%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/diagram.cpp.o /home/jenkins/util/avro/src/lib/voronoi/diagram.cpp: In member function ‘void avro::voronoi::PowerDiagram::add_cell(const avro::voronoi::Cell&, bool)’: /home/jenkins/util/avro/src/lib/voronoi/diagram.cpp:187:7: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 187 | for (index_t i = 0; i < polytope.size(); i++) | ^~~ /home/jenkins/util/avro/src/lib/voronoi/diagram.cpp:189:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 189 | add( polytope.data() , polytope.size() ); | ^~~ [ 86%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/facets.cpp.o [ 86%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/optimal_transport.cpp.o [ 88%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/particles.cpp.o [ 88%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/vertex.cpp.o [ 88%] Building CXX object src/CMakeFiles/avro_src.dir/bin/adapt.cpp.o [ 88%] Building CXX object src/CMakeFiles/avro_src.dir/bin/animate.cpp.o [ 91%] Building CXX object src/CMakeFiles/avro_src.dir/bin/arguments.cpp.o [ 91%] Building CXX object src/CMakeFiles/avro_src.dir/bin/check.cpp.o /home/jenkins/util/avro/src/bin/check.cpp: In function ‘int avro::programs::check(int, const char**)’: /home/jenkins/util/avro/src/bin/check.cpp:66:19: warning: unused variable ‘topology’ [-Wunused-variable] 66 | Topology<type>& topology = *static_cast<Topology<type>*>(ptopology.get()); | ^~~~~~~~ [ 91%] Building CXX object src/CMakeFiles/avro_src.dir/bin/conformity.cpp.o [ 91%] Building CXX object src/CMakeFiles/avro_src.dir/bin/conformityp.cpp.o [ 91%] Building CXX object src/CMakeFiles/avro_src.dir/bin/convert.cpp.o [ 94%] Building CXX object src/CMakeFiles/avro_src.dir/bin/image.cpp.o [ 94%] Building CXX object src/CMakeFiles/avro_src.dir/bin/plot.cpp.o [ 94%] Built target avro_src Consolidate compiler generated dependencies of target avro_third_party [ 94%] Building CXX object src/third_party/CMakeFiles/avro_third_party.dir/tetgen1.5.0/predicates.cxx.o [ 97%] Building CXX object src/third_party/CMakeFiles/avro_third_party.dir/tetgen1.5.0/tetgen.cxx.o [ 97%] Building C object src/third_party/CMakeFiles/avro_third_party.dir/libmeshb/libmeshb7.c.o [ 97%] Building C object src/third_party/CMakeFiles/avro_third_party.dir/triangle/triangle.c.o [ 97%] Building CXX object src/third_party/CMakeFiles/avro_third_party.dir/geogram/kd_tree.cpp.o [100%] Building C object src/third_party/CMakeFiles/avro_third_party.dir/geogram/nl.c.o [100%] Building CXX object src/third_party/CMakeFiles/avro_third_party.dir/geogram/nn_search.cpp.o [100%] Built target avro_third_party [100%] Linking CXX static library ../lib/libavro.a [100%] Built target avro_static [100%] Linking CXX shared library ../lib/libavro.so [100%] Built target avro_shared [100%] Built target avro_lib cmake debug_gnu11 -- Build type = debug -- The C compiler identification is GNU 9.4.0 -- The CXX compiler identification is GNU 9.4.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- lapack not found -- only supporting WebViewer -- Setting gnu compiler flags -- CPU thread manager = c++11. -- GPU threading not enabled. GPU thread manager = serial. -- Please install kcachegrind for graphical profiling. -- Please install massif-visualizer for graphical heap memory usage. -- pybind11 v2.10.0 dev1 -- Configuring done -- Generating done -- Build files have been written to: /home/jenkins/util/avro/build/debug_gnu11 make -C debug_gnu11 --no-print-directory avro_lib Consolidate compiler generated dependencies of target avro_src [ 0%] Building CXX object src/CMakeFiles/avro_src.dir/include/avro.cpp.o [ 2%] Building CXX object src/CMakeFiles/avro_src.dir/include/avro_params.cpp.o [ 2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/adapt.cpp.o [ 2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/cavity.cpp.o [ 2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/collapses.cpp.o [ 5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/filter.cpp.o /home/jenkins/util/avro/src/lib/adaptation/filter.cpp: In member function ‘void avro::Filter::generateCandidates(avro::Topology<avro::Simplex>&, avro::MetricField<avro::Simplex>&, avro::real_t, avro::Insert<avro::Simplex>&)’: /home/jenkins/util/avro/src/lib/adaptation/filter.cpp:139:11: warning: variable ‘TIME0’ set but not used [-Wunused-but-set-variable] 139 | clock_t TIME0, TIME1; | ^~~~~ /home/jenkins/util/avro/src/lib/adaptation/filter.cpp:139:18: warning: variable ‘TIME1’ set but not used [-Wunused-but-set-variable] 139 | clock_t TIME0, TIME1; | ^~~~~ [ 5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/geometry.cpp.o [ 5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/implied_metric.cpp.o /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp: In instantiation of ‘void avro::ElementImpliedMetric<type>::compute(const std::vector<const double*>&) [with type = avro::Simplex]’: /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:638:16: required from here /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:96:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy] 96 | J_ = J0_*Jeq_; | ~~~^~~~~~~~~~ In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16, from /home/jenkins/util/avro/src/lib/element/simplex.h:19, from /home/jenkins/util/avro/src/lib/element/polytope.h:16, from /home/jenkins/util/avro/src/lib/mesh/field.h:18, from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16, from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10: /home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’ 47 | matd(const matd& A) : | ^~~~ /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:99:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy] 99 | M_ = numerics::inverse( JJt ); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16, from /home/jenkins/util/avro/src/lib/element/simplex.h:19, from /home/jenkins/util/avro/src/lib/element/polytope.h:16, from /home/jenkins/util/avro/src/lib/mesh/field.h:18, from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16, from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10: /home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’ 47 | matd(const matd& A) : | ^~~~ /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp: In instantiation of ‘void avro::ElementImpliedMetric<type>::compute(const avro::Points&, const index_t*, avro::index_t) [with type = avro::Simplex; avro::index_t = long unsigned int]’: /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:638:16: required from here /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:110:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy] 110 | J_ = J0_*Jeq_; | ~~~^~~~~~~~~~ In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16, from /home/jenkins/util/avro/src/lib/element/simplex.h:19, from /home/jenkins/util/avro/src/lib/element/polytope.h:16, from /home/jenkins/util/avro/src/lib/mesh/field.h:18, from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16, from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10: /home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’ 47 | matd(const matd& A) : | ^~~~ /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:113:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy] 113 | M_ = numerics::inverse( JJt ); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16, from /home/jenkins/util/avro/src/lib/element/simplex.h:19, from /home/jenkins/util/avro/src/lib/element/polytope.h:16, from /home/jenkins/util/avro/src/lib/mesh/field.h:18, from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16, from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10: /home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’ 47 | matd(const matd& A) : | ^~~~ /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp: In instantiation of ‘void avro::ElementImpliedMetric<type>::inverse(const avro::Points&, const index_t*, avro::index_t) [with type = avro::Simplex; avro::index_t = long unsigned int]’: /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:638:16: required from here /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:125:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy] 125 | J_ = J0_*Jeq_; | ~~~^~~~~~~~~~ In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16, from /home/jenkins/util/avro/src/lib/element/simplex.h:19, from /home/jenkins/util/avro/src/lib/element/polytope.h:16, from /home/jenkins/util/avro/src/lib/mesh/field.h:18, from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16, from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10: /home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’ 47 | matd(const matd& A) : | ^~~~ /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:126:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy] 126 | M_ = J_*numerics::transpose(J_); // no inverse | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16, from /home/jenkins/util/avro/src/lib/element/simplex.h:19, from /home/jenkins/util/avro/src/lib/element/polytope.h:16, from /home/jenkins/util/avro/src/lib/mesh/field.h:18, from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16, from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10: /home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’ 47 | matd(const matd& A) : | ^~~~ [ 5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/insertions.cpp.o [ 8%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/metric.cpp.o /home/jenkins/util/avro/src/lib/adaptation/metric.cpp: In instantiation of ‘avro::real_t avro::MetricField<type>::length(avro::index_t, avro::index_t) const [with type = avro::Simplex; avro::real_t = double; avro::index_t = long unsigned int]’: /home/jenkins/util/avro/src/lib/adaptation/metric.cpp:708:16: required from here /home/jenkins/util/avro/src/lib/adaptation/metric.cpp:146:10: warning: variable ‘dim’ set but not used [-Wunused-but-set-variable] 146 | coord_t dim = topology_.points().dim(); | ^~~ [ 8%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/parallel.cpp.o [ 8%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/primitive.cpp.o [ 8%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/properties.cpp.o [ 8%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/smoothing.cpp.o [ 11%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/swaps.cpp.o [ 11%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/crypto.cpp.o [ 11%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/error.cpp.o [ 11%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/kdtree.cpp.o [ 13%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/nearest_neighbours.cpp.o [ 13%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_cpu.cpp.o [ 13%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_gpu.cpp.o [ 13%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_mpi.cpp.o [ 16%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/tools.cpp.o [ 16%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/basis.cpp.o [ 16%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_line.cpp.o [ 16%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_pentatope.cpp.o [ 19%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_tetrahedron.cpp.o [ 19%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_triangle.cpp.o [ 19%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/element.cpp.o [ 19%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_line.cpp.o [ 19%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_nodes.cpp.o [ 22%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_pentatope.cpp.o [ 22%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_tetrahedron.cpp.o [ 22%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_triangle.cpp.o [ 22%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_line.cpp.o /home/jenkins/util/avro/src/lib/element/legendre_line.cpp: In static member function ‘static void avro::Legendre<avro::Simplex, N, P>::eval(const double*, double*) [with int N = 1; int P = 0]’: /home/jenkins/util/avro/src/lib/element/legendre_line.cpp:24:10: warning: unused variable ‘s’ [-Wunused-variable] 24 | real_t s = x[0]; | ^ [ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_pentatope.cpp.o [ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_tetrahedron.cpp.o [ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_triangle.cpp.o [ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/polytope.cpp.o [ 27%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/quadrature.cpp.o /home/jenkins/util/avro/src/lib/element/quadrature.cpp: In instantiation of ‘void avro::QuadratureStore<type>::build() [with type = avro::Simplex]’: /home/jenkins/util/avro/src/lib/element/quadrature.cpp:38:3: required from ‘avro::QuadratureStore<type>::QuadratureStore(avro::BasisFunctionCategory) [with type = avro::Simplex]’ /home/jenkins/util/avro/src/lib/element/quadrature.cpp:26:83: required from here /home/jenkins/util/avro/src/lib/element/quadrature.cpp:93:16: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy] 93 | B[d] = matd<real_t>( nb_basis , quad.nb() ); In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16, from /home/jenkins/util/avro/src/lib/element/quadrature.cpp:14: /home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’ 47 | matd(const matd& A) : | ^~~~ /home/jenkins/util/avro/src/lib/element/quadrature.cpp:114:16: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy] 114 | B[d] = Ainv*B[d]; // convert modal basis to nodal basis In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16, from /home/jenkins/util/avro/src/lib/element/quadrature.cpp:14: /home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’ 47 | matd(const matd& A) : | ^~~~ [ 27%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/reference.cpp.o [ 27%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/simplex.cpp.o /home/jenkins/util/avro/src/lib/element/simplex.cpp: In member function ‘void avro::Simplex::precalculate()’: /home/jenkins/util/avro/src/lib/element/simplex.cpp:120:25: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 120 | for (index_t k = 0; k < number_+1; k++) | ~~^~~~~~~~~~~ [ 27%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/trace2cell.cpp.o [ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/body.cpp.o [ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/entity.cpp.o [ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/model.cpp.o [ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/tessellation.cpp.o [ 33%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/body.cpp.o [ 33%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/context.cpp.o [ 33%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/data.cpp.o [ 33%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/model.cpp.o [ 33%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/object.cpp.o [ 36%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/psc/facet.cpp.o [ 36%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/psc/node.cpp.o [ 36%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/psc/object.cpp.o [ 36%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/application.cpp.o [ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/bsp.cpp.o [ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/camera.cpp.o [ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/colormap.cpp.o [ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/gl.cpp.o [ 41%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/gui.cpp.o /home/jenkins/util/avro/src/lib/graphics/gui.cpp:71:1: warning: ‘std::vector<const char*> avro::graphics::convert_to_char(const std::vector<std::__cxx11::basic_string<char> >&)’ defined but not used [-Wunused-function] 71 | convert_to_char( const std::vector<std::string>& s ) { | ^~~~~~~~~~~~~~~ [ 41%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/math.cpp.o [ 41%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/opengl.cpp.o /home/jenkins/util/avro/src/lib/graphics/opengl.cpp: In member function ‘void avro::graphics::Window::select_colormap(const string&)’: /home/jenkins/util/avro/src/lib/graphics/opengl.cpp:475:11: warning: unused variable ‘ncolor’ [-Wunused-variable] 475 | index_t ncolor = 256*3; | ^~~~~~ /home/jenkins/util/avro/src/lib/graphics/opengl.cpp: In member function ‘void avro::graphics::ClipPlane::write()’: /home/jenkins/util/avro/src/lib/graphics/opengl.cpp:418:28: warning: ‘buffers[0]’ is used uninitialized in this function [-Wuninitialized] 418 | point_buffer_ = buffers[0]; | ~~~~~~~~~^ /home/jenkins/util/avro/src/lib/graphics/opengl.cpp:419:28: warning: ‘buffers[1]’ is used uninitialized in this function [-Wuninitialized] 419 | index_buffer_ = buffers[1]; | ~~~~~~~~~^ /home/jenkins/util/avro/src/lib/graphics/opengl.cpp: In member function ‘void avro::graphics::Window::select_colormap(const string&)’: /home/jenkins/util/avro/src/lib/graphics/opengl.cpp:486:25: warning: ‘colormap_texture’ may be used uninitialized in this function [-Wmaybe-uninitialized] 486 | manager_.track_texture(colormap_texture); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /home/jenkins/util/avro/src/lib/graphics/opengl.cpp:487:24: warning: ‘colormap_buffer’ may be used uninitialized in this function [-Wmaybe-uninitialized] 487 | manager_.track_buffer(colormap_buffer); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ [ 41%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/plot.cpp.o [ 44%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/postscript.cpp.o [ 44%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/primitives.cpp.o [ 44%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/raytracer.cpp.o /home/jenkins/util/avro/src/lib/graphics/raytracer.cpp: In member function ‘void avro::graphics::Canvas::convert()’: /home/jenkins/util/avro/src/lib/graphics/raytracer.cpp:97:25: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 97 | for (index_t i = 0; i < height_; i++) | ~~^~~~~~~~~ /home/jenkins/util/avro/src/lib/graphics/raytracer.cpp:98:25: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 98 | for (index_t j = 0; j < width_; j++) | ~~^~~~~~~~ /home/jenkins/util/avro/src/lib/graphics/raytracer.cpp: In member function ‘void avro::graphics::RayTracer::render()’: /home/jenkins/util/avro/src/lib/graphics/raytracer.cpp:435:27: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 435 | for (index_t j = 0; j < canvas_.width(); j++) { | ~~^~~~~~~~~~~~~~~~~ [ 44%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/shader.cpp.o [ 44%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/vao.cpp.o [ 47%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/vao_polytope.cpp.o /home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp: In member function ‘void avro::graphics::PolytopeDecomposition::triangulate()’: /home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp:136:11: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 136 | for (index_t j = 0; j < coordinates_.size()/3; j++) | ^~~ /home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp:139:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 139 | for (index_t j = 0; j < output.numberofpoints; j++) | ^~~ /home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp:139:35: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 139 | for (index_t j = 0; j < output.numberofpoints; j++) | ~~^~~~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/webglpp.cpp.o [ 47%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/websockets.cpp.o [ 47%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/window.cpp.o [ 50%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/ckf.cpp.o [ 50%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/csm.cpp.o [ 50%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/egads.cpp.o [ 50%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/eps.cpp.o [ 52%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/factory.cpp.o [ 52%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/field.cpp.o [ 52%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/library.cpp.o [ 52%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/meshb.cpp.o [ 55%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/metric.cpp.o [ 55%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/obj.cpp.o [ 55%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/plots.cpp.o [ 55%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/samples.cpp.o [ 55%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/spacetime.cpp.o [ 58%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/tesseract.cpp.o [ 58%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/boundary.cpp.o [ 58%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/builder.cpp.o [ 58%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/decomposition.cpp.o [ 61%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/dof.cpp.o [ 61%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/facets.cpp.o [ 61%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/field.cpp.o [ 61%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/interpolation.cpp.o [ 63%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/inverse.cpp.o [ 63%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/mesh.cpp.o [ 63%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/mpi.cpp.o [ 63%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/neighbours.cpp.o [ 66%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/partition.cpp.o [ 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CXX object src/CMakeFiles/avro_src.dir/lib/numerics/vec.cpp.o [ 75%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/orient4d.cpp.o [ 75%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side1_exact.cpp.o [ 75%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side2_exact.cpp.o [ 77%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side3_exact.cpp.o [ 77%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side4_exact.cpp.o [ 77%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side5_exact.cpp.o [ 77%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_10d.cpp.o [ 80%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_3d.cpp.o [ 80%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_4d.cpp.o [ 80%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_5d.cpp.o [ 80%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_6d.cpp.o [ 80%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_7d.cpp.o [ 83%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_8d.cpp.o [ 83%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_9d.cpp.o [ 83%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/bowyer_watson.cpp.o [ 83%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/cell.cpp.o [ 86%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/cell_nd.cpp.o [ 86%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/diagram.cpp.o /home/jenkins/util/avro/src/lib/voronoi/diagram.cpp: In member function ‘void avro::voronoi::PowerDiagram::add_cell(const avro::voronoi::Cell&, bool)’: /home/jenkins/util/avro/src/lib/voronoi/diagram.cpp:187:7: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 187 | for (index_t i = 0; i < polytope.size(); i++) | ^~~ /home/jenkins/util/avro/src/lib/voronoi/diagram.cpp:189:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 189 | add( polytope.data() , polytope.size() ); | ^~~ [ 86%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/facets.cpp.o [ 86%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/optimal_transport.cpp.o [ 88%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/particles.cpp.o [ 88%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/vertex.cpp.o [ 88%] Building CXX object src/CMakeFiles/avro_src.dir/bin/adapt.cpp.o [ 88%] Building CXX object src/CMakeFiles/avro_src.dir/bin/animate.cpp.o [ 91%] Building CXX object src/CMakeFiles/avro_src.dir/bin/arguments.cpp.o [ 91%] Building CXX object src/CMakeFiles/avro_src.dir/bin/check.cpp.o /home/jenkins/util/avro/src/bin/check.cpp: In function ‘int avro::programs::check(int, const char**)’: /home/jenkins/util/avro/src/bin/check.cpp:66:19: warning: unused variable ‘topology’ [-Wunused-variable] 66 | Topology<type>& topology = *static_cast<Topology<type>*>(ptopology.get()); | ^~~~~~~~ [ 91%] Building CXX object src/CMakeFiles/avro_src.dir/bin/conformity.cpp.o [ 91%] Building CXX object src/CMakeFiles/avro_src.dir/bin/conformityp.cpp.o [ 91%] Building CXX object src/CMakeFiles/avro_src.dir/bin/convert.cpp.o [ 94%] Building CXX object src/CMakeFiles/avro_src.dir/bin/image.cpp.o [ 94%] Building CXX object src/CMakeFiles/avro_src.dir/bin/plot.cpp.o [ 94%] Built target avro_src Consolidate compiler generated dependencies of target avro_third_party [ 94%] Building CXX object src/third_party/CMakeFiles/avro_third_party.dir/tetgen1.5.0/predicates.cxx.o [ 97%] Building CXX object src/third_party/CMakeFiles/avro_third_party.dir/tetgen1.5.0/tetgen.cxx.o [ 97%] Building C object src/third_party/CMakeFiles/avro_third_party.dir/libmeshb/libmeshb7.c.o [ 97%] Building C object src/third_party/CMakeFiles/avro_third_party.dir/triangle/triangle.c.o [ 97%] Building CXX object src/third_party/CMakeFiles/avro_third_party.dir/geogram/kd_tree.cpp.o [100%] Building C object src/third_party/CMakeFiles/avro_third_party.dir/geogram/nl.c.o [100%] Building CXX object src/third_party/CMakeFiles/avro_third_party.dir/geogram/nn_search.cpp.o [100%] Built target avro_third_party [100%] Linking CXX static library ../lib/libavro.a [100%] Built target avro_static [100%] Linking CXX shared library ../lib/libavro.so [100%] Built target avro_shared [100%] Built target avro_lib cmake debug_clang -- Build type = debug -- The C compiler identification is Clang 12.0.0 -- The CXX compiler identification is Clang 12.0.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/clang - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/clang++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- lapack not found -- only supporting WebViewer -- Setting clang compiler flags -- CPU thread manager = c++11. -- GPU threading not enabled. 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[ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_pentatope.cpp.o [ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_tetrahedron.cpp.o [ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_triangle.cpp.o [ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/polytope.cpp.o [ 27%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/quadrature.cpp.o In file included from /home/jenkins/util/avro/src/lib/element/quadrature.cpp:18: /home/jenkins/util/avro/src/lib/element/quadrature_cp.h:1065:7: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation] for (int k = 0; k < order; k++) ^ /home/jenkins/util/avro/src/lib/element/quadrature_cp.h:1061:5: note: previous statement is here for (int j = 0; j < nDim; j++) ^ 1 warning generated. [ 27%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/reference.cpp.o [ 27%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/simplex.cpp.o [ 27%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/trace2cell.cpp.o [ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/body.cpp.o [ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/entity.cpp.o [ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/model.cpp.o [ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/tessellation.cpp.o [ 33%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/body.cpp.o [ 33%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/context.cpp.o [ 33%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/data.cpp.o [ 33%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/model.cpp.o [ 33%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/object.cpp.o [ 36%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/psc/facet.cpp.o [ 36%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/psc/node.cpp.o [ 36%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/psc/object.cpp.o [ 36%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/application.cpp.o [ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/bsp.cpp.o [ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/camera.cpp.o [ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/colormap.cpp.o [ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/gl.cpp.o [ 41%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/gui.cpp.o /home/jenkins/util/avro/src/lib/graphics/gui.cpp:71:1: warning: unused function 'convert_to_char' [-Wunused-function] convert_to_char( const std::vector<std::string>& s ) { ^ 1 warning generated. [ 41%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/math.cpp.o [ 41%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/opengl.cpp.o /home/jenkins/util/avro/src/lib/graphics/opengl.cpp:475:11: warning: unused variable 'ncolor' [-Wunused-variable] index_t ncolor = 256*3; ^ /home/jenkins/util/avro/src/lib/graphics/opengl.cpp:486:26: warning: variable 'colormap_texture' is uninitialized when used here [-Wuninitialized] manager_.track_texture(colormap_texture); ^~~~~~~~~~~~~~~~ /home/jenkins/util/avro/src/lib/graphics/opengl.cpp:480:26: note: initialize the variable 'colormap_texture' to silence this warning GLuint colormap_texture; ^ = 0 /home/jenkins/util/avro/src/lib/graphics/opengl.cpp:487:25: warning: variable 'colormap_buffer' is uninitialized when used here [-Wuninitialized] manager_.track_buffer(colormap_buffer); ^~~~~~~~~~~~~~~ /home/jenkins/util/avro/src/lib/graphics/opengl.cpp:471:27: note: initialize the variable 'colormap_buffer' to silence this warning gl_index colormap_buffer; ^ = 0 3 warnings generated. [ 41%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/plot.cpp.o [ 44%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/postscript.cpp.o [ 44%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/primitives.cpp.o [ 44%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/raytracer.cpp.o [ 44%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/shader.cpp.o [ 44%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/vao.cpp.o [ 47%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/vao_polytope.cpp.o /home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp:139:13: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation] for (index_t j = 0; j < output.numberofpoints; j++) ^ /home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp:136:11: note: previous statement is here for (index_t j = 0; j < coordinates_.size()/3; j++) ^ 1 warning generated. 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[ 86%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/facets.cpp.o [ 86%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/optimal_transport.cpp.o [ 88%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/particles.cpp.o [ 88%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/vertex.cpp.o [ 88%] Building CXX object src/CMakeFiles/avro_src.dir/bin/adapt.cpp.o [ 88%] Building CXX object src/CMakeFiles/avro_src.dir/bin/animate.cpp.o [ 91%] Building CXX object src/CMakeFiles/avro_src.dir/bin/arguments.cpp.o [ 91%] Building CXX object src/CMakeFiles/avro_src.dir/bin/check.cpp.o /home/jenkins/util/avro/src/bin/check.cpp:66:19: warning: unused variable 'topology' [-Wunused-variable] Topology<type>& topology = *static_cast<Topology<type>*>(ptopology.get()); ^ 1 warning generated. 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Tell CMake where to find the compiler by setting either the environment variable "CC" or the CMake cache entry CMAKE_C_COMPILER to the full path to the compiler, or to the compiler name if it is in the PATH. CMake Error at CMakeLists.txt:14 (project): The CMAKE_CXX_COMPILER: icpc is not a full path and was not found in the PATH. Tell CMake where to find the compiler by setting either the environment variable "CXX" or the CMake cache entry CMAKE_CXX_COMPILER to the full path to the compiler, or to the compiler name if it is in the PATH. -- Configuring incomplete, errors occurred! See also "/home/jenkins/util/avro/build/debug_intel/CMakeFiles/CMakeOutput.log". See also "/home/jenkins/util/avro/build/debug_intel/CMakeFiles/CMakeError.log". make: *** [Makefile:13: debug_intel] Error 1 [Static Analysis] Reference build recorder is not configured [Static Analysis] Obtaining reference build from same job (SANS_avro) [Static Analysis] Using reference build 'SANS_avro #67' to compute new, fixed, and outstanding issues [Static Analysis] Issues delta (vs. reference build): outstanding: 0, new: 0, fixed: 0 [Static Analysis] Evaluating quality gates [Static Analysis] -> PASSED - Total (any severity): 0 - Quality QualityGate: 1 [Static Analysis] -> All quality gates have been passed [Static Analysis] Health report is disabled - skipping [Static Analysis] Created analysis result for 0 issues (found 0 new issues, fixed 0 issues) [Static Analysis] Attaching ResultAction with ID 'analysis' to build 'SANS_avro #68'. [Checks API] No suitable checks publisher found. Finished: UNSTABLE