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Started by user galbramc
Running as galbramc
[EnvInject] - Loading node environment variables.
Building remotely on reynolds in workspace /jenkins/workspace/SANS_avro
[WS-CLEANUP] Deleting project workspace...
[WS-CLEANUP] Done
The recommended git tool is: NONE
using credential 3614a4cf-01de-4393-97de-73734b7dd5a2
 > git rev-parse --resolve-git-dir /jenkins/workspace/SANS_avro/.git # timeout=10
Fetching changes from the remote Git repository
 > git config remote.acdl.url ssh://jenkins@acdl.mit.edu/home/svnroot/SANSproto/ # timeout=10
Pruning obsolete local branches
Cleaning workspace
 > git rev-parse --verify HEAD # timeout=10
Resetting working tree
 > git reset --hard # timeout=10
 > git clean -fdx # timeout=10
Fetching upstream changes from ssh://jenkins@acdl.mit.edu/home/svnroot/SANSproto/
 > git --version # timeout=10
 > git --version # 'git version 2.25.1'
using GIT_SSH to set credentials 
 > git fetch --tags --force --progress --prune -- ssh://jenkins@acdl.mit.edu/home/svnroot/SANSproto/ +refs/heads/*:refs/remotes/acdl/* # timeout=10
 > git rev-parse acdl/develop^{commit} # timeout=10
Checking out Revision a514fe3ef59a7252e00cbf0801a65155e9785a95 (acdl/develop)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f a514fe3ef59a7252e00cbf0801a65155e9785a95 # timeout=10
Commit message: "Intel..."
 > git rev-list --no-walk a514fe3ef59a7252e00cbf0801a65155e9785a95 # timeout=10
The recommended git tool is: NONE
using credential 3614a4cf-01de-4393-97de-73734b7dd5a2
 > git rev-parse a514fe3ef59a7252e00cbf0801a65155e9785a95^{commit} # timeout=10
The recommended git tool is: NONE
using credential 3614a4cf-01de-4393-97de-73734b7dd5a2
[GitCheckoutListener] Recording commits of 'git ssh://jenkins@acdl.mit.edu/home/svnroot/SANSproto/'
[GitCheckoutListener] Found previous build 'SANS_avro #72' that contains recorded Git commits
[GitCheckoutListener] -> Starting recording of new commits since 'a514fe3'
[GitCheckoutListener] -> Using head commit 'a514fe3' as starting point
[GitCheckoutListener] -> Git commit decorator could not be created for SCM 'hudson.plugins.git.GitSCM@6776577f'
[GitCheckoutListener] -> No new commits found
No emails were triggered.
Triggering SANS_avro » release_gnu9,reynolds
Triggering SANS_avro » release_gnu10,reynolds
Triggering SANS_avro » release_clang,reynolds
Triggering SANS_avro » release_intel,reynolds
Triggering SANS_avro » release_gnu11,reynolds

SANS_avro » release_gnu9,reynolds completed with result SUCCESS

SANS_avro » release_gnu10,reynolds completed with result SUCCESS

SANS_avro » release_clang,reynolds completed with result SUCCESS

SANS_avro » release_intel,reynolds completed with result SUCCESS

SANS_avro » release_gnu11,reynolds completed with result SUCCESS
Email was triggered for: Success
Sending email for trigger: Success
Sending email to: allmaras@mit.edu galbramc@mit.edu darmofal@mit.edu pcaplan@mit.edu arthuang@mit.edu savithru@mit.edu hcarson@mit.edu blsc@mit.edu shunz@mit.edu dmw72@psu.edu eam5515@psu.edu kug46@psu.edu ursachi@mit.edu cfrontin@mit.edu jzavala@mit.edu mlarocca@mit.edu ksabo@mit.edu vpr11@mit.edu jta29@psu.edu waligura@mit.edu cwomack@mit.edu deanna.sewell@colorado.edu
[PostBuildScript] - [INFO] Executing post build scripts.
[SANS_avro] $ /bin/bash -xe /tmp/jenkins9854201297279893165.sh
+ cd /home/jenkins/util/avro/
+ git stash
Saved working directory and index state WIP on main: 89d5491 Merge branch 'sabrina' into 'main'
+ git pull
Already up to date.
+ git stash pop
On branch main
Your branch is up to date with 'origin/main'.

Changes not staged for commit:
  (use "git add <file>..." to update what will be committed)
  (use "git restore <file>..." to discard changes in working directory)
	modified:   cmake/compiler.cmake
	modified:   src/third_party/pybind11 (new commits)

no changes added to commit (use "git add" and/or "git commit -a")
Dropped refs/stash@{0} (0df46a6b3dffa73e60602c2c3a64294df1d7a253)
+ ./get_submodules.sh
+ cd build
+ git archive --remote=ssh://acdl.mit.edu/master/home/svnroot/SANSproto develop:scripts/jenkins -- jenkins_env.sh
+ tar -O -xf -
+ source jenkins_env.sh
++ shopt -s nocasematch
+++ pwd
++ dir=/home/jenkins/util/avro/build
+++ basename /home/jenkins/util/avro/build
++ builddir=build
++ export AFLR_VERSION=10.17.5
++ AFLR_VERSION=10.17.5
+++ hostname
++ [[ reynolds == *\r\e\y\n\o\l\d\s* ]]
++ [[ build == *\i\n\t\e\l* ]]
++ [[ build == *\c\o\v\e\r\a\g\e* ]]
++ export PATH=/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
++ PATH=/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
++ export LD_LIBRARY_PATH=/usr/lib:
++ LD_LIBRARY_PATH=/usr/lib:
++ export LAPACK_DIR=/home/jenkins/util/lapack/lapack-3.6.1/install
++ LAPACK_DIR=/home/jenkins/util/lapack/lapack-3.6.1/install
++ export ESP_DIR=/home/jenkins/util/ESP/EngSketchPad
++ ESP_DIR=/home/jenkins/util/ESP/EngSketchPad
++ export CAS_DIR=/home/jenkins/util/ESP/OpenCASCADE-7.4.1
++ CAS_DIR=/home/jenkins/util/ESP/OpenCASCADE-7.4.1
++ export AFLR_DIR=/home/jenkins/util/AFLR/aflr_lib_10.17.5
++ AFLR_DIR=/home/jenkins/util/AFLR/aflr_lib_10.17.5
+++ ls -d /home/jenkins/util/PETSc/petsc/install_dir
++ export PETSC_DIR=/home/jenkins/util/PETSc/petsc/install_dir
++ PETSC_DIR=/home/jenkins/util/PETSc/petsc/install_dir
++ export PARMETIS_DIR=/home/jenkins/util/parmetis/parmetis-4.0.3/install
++ PARMETIS_DIR=/home/jenkins/util/parmetis/parmetis-4.0.3/install
++ export METIS_DIR=/home/jenkins/util/parmetis/metis-5.1.0/install
++ METIS_DIR=/home/jenkins/util/parmetis/metis-5.1.0/install
++ export REFINE_DIR=/home/jenkins/util/refine/build_parallel/install
++ REFINE_DIR=/home/jenkins/util/refine/build_parallel/install
++ export AVRO_DIR=/home/jenkins/util/avro
++ AVRO_DIR=/home/jenkins/util/avro
++ '[' -d /home/jenkins/util/NLOPT ']'
++ export PATH=/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
++ PATH=/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
++ export PATH=/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
++ PATH=/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
+++ ls -d /home/jenkins/util/ccache/ccache-4.4/install/bin
++ export PATH=/home/jenkins/util/ccache/ccache-4.4/install/bin:/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
++ PATH=/home/jenkins/util/ccache/ccache-4.4/install/bin:/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
++ export PATH=/home/jenkins/util/valgrind/valgrind-3.17.0/install/bin:/home/jenkins/util/ccache/ccache-4.4/install/bin:/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
++ PATH=/home/jenkins/util/valgrind/valgrind-3.17.0/install/bin:/home/jenkins/util/ccache/ccache-4.4/install/bin:/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
++ export PATH=/home/jenkins/util/fefloa/bin:/home/jenkins/util/valgrind/valgrind-3.17.0/install/bin:/home/jenkins/util/ccache/ccache-4.4/install/bin:/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
++ PATH=/home/jenkins/util/fefloa/bin:/home/jenkins/util/valgrind/valgrind-3.17.0/install/bin:/home/jenkins/util/ccache/ccache-4.4/install/bin:/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
++ [[ build == *\i\n\t\e\l* ]]
+++ hostname
++ [[ reynolds == *\c\e\n\t\O\S\7* ]]
+++ hostname
++ [[ reynolds == *\r\h\e\l* ]]
++ export Boost_NO_SYSTEM_PATHS=OFF
++ Boost_NO_SYSTEM_PATHS=OFF
++ env
+ source /opt/intel/oneapi/setvars.sh
++ script_name=setvars.sh
++ env_vars_args=
++ config_file=
++ config_array=
++ component_array=
++ warning_tally=0
++ posix_nl='
'
+++ save_args
+++ echo ' '
++ script_args=' '
++ _setvars_this_script_name=setvars.sh
+++ _setvars_get_proc_name /tmp/jenkins9854201297279893165.sh
+++ '[' -n '' ']'
+++ script=/tmp/jenkins9854201297279893165.sh
+++ '[' -L /tmp/jenkins9854201297279893165.sh ']'
+++ basename -- /tmp/jenkins9854201297279893165.sh
++ '[' setvars.sh = jenkins9854201297279893165.sh ']'
++ sourcer=
++ sourced_nm=
+++ ps -p 1338345 -o comm=
++ sourced_sh=bash
+++ _setvars_get_proc_name /tmp/jenkins9854201297279893165.sh
+++ '[' -n '' ']'
+++ script=/tmp/jenkins9854201297279893165.sh
+++ '[' -L /tmp/jenkins9854201297279893165.sh ']'
+++ basename -- /tmp/jenkins9854201297279893165.sh
++ proc_name=jenkins9854201297279893165.sh
++ '[' -n '' ']'
++ '[' -n '' ']'
++ '[' -n '5.0.17(1)-release' ']'
+++ printf '%s: %s' jenkins9854201297279893165.sh 'BASH_VERSION = 5.0.17(1)-release'
++ sourcer='jenkins9854201297279893165.sh: BASH_VERSION = 5.0.17(1)-release'
++ return 0
++ sourced_nm=/opt/intel/oneapi/setvars.sh
++ '[' '' = /opt/intel/oneapi/setvars.sh ']'
+++ get_script_path /opt/intel/oneapi/setvars.sh
+++ script=/opt/intel/oneapi/setvars.sh
+++ '[' -L /opt/intel/oneapi/setvars.sh ']'
++++ command dirname -- /opt/intel/oneapi/setvars.sh
++++ dirname -- /opt/intel/oneapi/setvars.sh
+++ script_dir=/opt/intel/oneapi
++++ cd /opt/intel/oneapi
++++ command pwd -P
++++ pwd -P
+++ script_dir=/opt/intel/oneapi
+++ printf %s /opt/intel/oneapi
++ script_root=/opt/intel/oneapi
++ help=0
++ force=0
++ config=0
++ config_file=
++ env_vars_args=
++ '[' 0 '!=' 0 ']'
++ '[' '' = 1 ']'
++ '[' 0 -eq 1 ']'
++ version_default=latest
+++ awk NF
+++ command ls /opt/intel/oneapi/compiler/2021.3.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/debugger/10.1.2/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.3.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.4.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/mkl/2021.3.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.3.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.3.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh
++ component_array='/opt/intel/oneapi/compiler/2021.3.0/env/vars.sh
/opt/intel/oneapi/compiler/latest/env/vars.sh
/opt/intel/oneapi/debugger/10.1.2/env/vars.sh
/opt/intel/oneapi/debugger/latest/env/vars.sh
/opt/intel/oneapi/dev-utilities/2021.3.0/env/vars.sh
/opt/intel/oneapi/dev-utilities/latest/env/vars.sh
/opt/intel/oneapi/dpl/2021.4.0/env/vars.sh
/opt/intel/oneapi/dpl/latest/env/vars.sh
/opt/intel/oneapi/mkl/2021.3.0/env/vars.sh
/opt/intel/oneapi/mkl/latest/env/vars.sh
/opt/intel/oneapi/mpi/2021.3.0/env/vars.sh
/opt/intel/oneapi/mpi/latest/env/vars.sh
/opt/intel/oneapi/tbb/2021.3.0/env/vars.sh
/opt/intel/oneapi/tbb/latest/env/vars.sh'
++ temp_array=
+++ prep_for_eval '/opt/intel/oneapi/compiler/2021.3.0/env/vars.sh
/opt/intel/oneapi/compiler/latest/env/vars.sh
/opt/intel/oneapi/debugger/10.1.2/env/vars.sh
/opt/intel/oneapi/debugger/latest/env/vars.sh
/opt/intel/oneapi/dev-utilities/2021.3.0/env/vars.sh
/opt/intel/oneapi/dev-utilities/latest/env/vars.sh
/opt/intel/oneapi/dpl/2021.4.0/env/vars.sh
/opt/intel/oneapi/dpl/latest/env/vars.sh
/opt/intel/oneapi/mkl/2021.3.0/env/vars.sh
/opt/intel/oneapi/mkl/latest/env/vars.sh
/opt/intel/oneapi/mpi/2021.3.0/env/vars.sh
/opt/intel/oneapi/mpi/latest/env/vars.sh
/opt/intel/oneapi/tbb/2021.3.0/env/vars.sh
/opt/intel/oneapi/tbb/latest/env/vars.sh'
+++ echo '/opt/intel/oneapi/compiler/2021.3.0/env/vars.sh
/opt/intel/oneapi/compiler/latest/env/vars.sh
/opt/intel/oneapi/debugger/10.1.2/env/vars.sh
/opt/intel/oneapi/debugger/latest/env/vars.sh
/opt/intel/oneapi/dev-utilities/2021.3.0/env/vars.sh
/opt/intel/oneapi/dev-utilities/latest/env/vars.sh
/opt/intel/oneapi/dpl/2021.4.0/env/vars.sh
/opt/intel/oneapi/dpl/latest/env/vars.sh
/opt/intel/oneapi/mkl/2021.3.0/env/vars.sh
/opt/intel/oneapi/mkl/latest/env/vars.sh
/opt/intel/oneapi/mpi/2021.3.0/env/vars.sh
/opt/intel/oneapi/mpi/latest/env/vars.sh
/opt/intel/oneapi/tbb/2021.3.0/env/vars.sh
/opt/intel/oneapi/tbb/latest/env/vars.sh'
+++ awk NF
+++ sed -e 's/^/'\''/g' -e 's/$/'\'' \\/g' -e '$s/\\$//'
++ eval set -- ''\''/opt/intel/oneapi/compiler/2021.3.0/env/vars.sh'\'' \
'\''/opt/intel/oneapi/compiler/latest/env/vars.sh'\'' \
'\''/opt/intel/oneapi/debugger/10.1.2/env/vars.sh'\'' \
'\''/opt/intel/oneapi/debugger/latest/env/vars.sh'\'' \
'\''/opt/intel/oneapi/dev-utilities/2021.3.0/env/vars.sh'\'' \
'\''/opt/intel/oneapi/dev-utilities/latest/env/vars.sh'\'' \
'\''/opt/intel/oneapi/dpl/2021.4.0/env/vars.sh'\'' \
'\''/opt/intel/oneapi/dpl/latest/env/vars.sh'\'' \
'\''/opt/intel/oneapi/mkl/2021.3.0/env/vars.sh'\'' \
'\''/opt/intel/oneapi/mkl/latest/env/vars.sh'\'' \
'\''/opt/intel/oneapi/mpi/2021.3.0/env/vars.sh'\'' \
'\''/opt/intel/oneapi/mpi/latest/env/vars.sh'\'' \
'\''/opt/intel/oneapi/tbb/2021.3.0/env/vars.sh'\'' \
'\''/opt/intel/oneapi/tbb/latest/env/vars.sh'\'' '
+++ set -- /opt/intel/oneapi/compiler/2021.3.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/debugger/10.1.2/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.3.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.4.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/mkl/2021.3.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.3.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.3.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh
++ for arg in "$@"
++++++ dirname -- /opt/intel/oneapi/compiler/2021.3.0/env/vars.sh
+++++ dirname -- /opt/intel/oneapi/compiler/2021.3.0/env
++++ dirname -- /opt/intel/oneapi/compiler/2021.3.0
+++ basename -- /opt/intel/oneapi/compiler
++ arg=compiler
++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']'
++ temp_array='compiler
'
++ for arg in "$@"
++++++ dirname -- /opt/intel/oneapi/compiler/latest/env/vars.sh
+++++ dirname -- /opt/intel/oneapi/compiler/latest/env
++++ dirname -- /opt/intel/oneapi/compiler/latest
+++ basename -- /opt/intel/oneapi/compiler
++ arg=compiler
++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']'
++ temp_array='compiler
compiler
'
++ for arg in "$@"
++++++ dirname -- /opt/intel/oneapi/debugger/10.1.2/env/vars.sh
+++++ dirname -- /opt/intel/oneapi/debugger/10.1.2/env
++++ dirname -- /opt/intel/oneapi/debugger/10.1.2
+++ basename -- /opt/intel/oneapi/debugger
++ arg=debugger
++ '[' -r /opt/intel/oneapi/debugger/latest/env/vars.sh ']'
++ temp_array='compiler
compiler
debugger
'
++ for arg in "$@"
++++++ dirname -- /opt/intel/oneapi/debugger/latest/env/vars.sh
+++++ dirname -- /opt/intel/oneapi/debugger/latest/env
++++ dirname -- /opt/intel/oneapi/debugger/latest
+++ basename -- /opt/intel/oneapi/debugger
++ arg=debugger
++ '[' -r /opt/intel/oneapi/debugger/latest/env/vars.sh ']'
++ temp_array='compiler
compiler
debugger
debugger
'
++ for arg in "$@"
++++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.3.0/env/vars.sh
+++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.3.0/env
++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.3.0
+++ basename -- /opt/intel/oneapi/dev-utilities
++ arg=dev-utilities
++ '[' -r /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']'
++ temp_array='compiler
compiler
debugger
debugger
dev-utilities
'
++ for arg in "$@"
++++++ dirname -- /opt/intel/oneapi/dev-utilities/latest/env/vars.sh
+++++ dirname -- /opt/intel/oneapi/dev-utilities/latest/env
++++ dirname -- /opt/intel/oneapi/dev-utilities/latest
+++ basename -- /opt/intel/oneapi/dev-utilities
++ arg=dev-utilities
++ '[' -r /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']'
++ temp_array='compiler
compiler
debugger
debugger
dev-utilities
dev-utilities
'
++ for arg in "$@"
++++++ dirname -- /opt/intel/oneapi/dpl/2021.4.0/env/vars.sh
+++++ dirname -- /opt/intel/oneapi/dpl/2021.4.0/env
++++ dirname -- /opt/intel/oneapi/dpl/2021.4.0
+++ basename -- /opt/intel/oneapi/dpl
++ arg=dpl
++ '[' -r /opt/intel/oneapi/dpl/latest/env/vars.sh ']'
++ temp_array='compiler
compiler
debugger
debugger
dev-utilities
dev-utilities
dpl
'
++ for arg in "$@"
++++++ dirname -- /opt/intel/oneapi/dpl/latest/env/vars.sh
+++++ dirname -- /opt/intel/oneapi/dpl/latest/env
++++ dirname -- /opt/intel/oneapi/dpl/latest
+++ basename -- /opt/intel/oneapi/dpl
++ arg=dpl
++ '[' -r /opt/intel/oneapi/dpl/latest/env/vars.sh ']'
++ temp_array='compiler
compiler
debugger
debugger
dev-utilities
dev-utilities
dpl
dpl
'
++ for arg in "$@"
++++++ dirname -- /opt/intel/oneapi/mkl/2021.3.0/env/vars.sh
+++++ dirname -- /opt/intel/oneapi/mkl/2021.3.0/env
++++ dirname -- /opt/intel/oneapi/mkl/2021.3.0
+++ basename -- /opt/intel/oneapi/mkl
++ arg=mkl
++ '[' -r /opt/intel/oneapi/mkl/latest/env/vars.sh ']'
++ temp_array='compiler
compiler
debugger
debugger
dev-utilities
dev-utilities
dpl
dpl
mkl
'
++ for arg in "$@"
++++++ dirname -- /opt/intel/oneapi/mkl/latest/env/vars.sh
+++++ dirname -- /opt/intel/oneapi/mkl/latest/env
++++ dirname -- /opt/intel/oneapi/mkl/latest
+++ basename -- /opt/intel/oneapi/mkl
++ arg=mkl
++ '[' -r /opt/intel/oneapi/mkl/latest/env/vars.sh ']'
++ temp_array='compiler
compiler
debugger
debugger
dev-utilities
dev-utilities
dpl
dpl
mkl
mkl
'
++ for arg in "$@"
++++++ dirname -- /opt/intel/oneapi/mpi/2021.3.0/env/vars.sh
+++++ dirname -- /opt/intel/oneapi/mpi/2021.3.0/env
++++ dirname -- /opt/intel/oneapi/mpi/2021.3.0
+++ basename -- /opt/intel/oneapi/mpi
++ arg=mpi
++ '[' -r /opt/intel/oneapi/mpi/latest/env/vars.sh ']'
++ temp_array='compiler
compiler
debugger
debugger
dev-utilities
dev-utilities
dpl
dpl
mkl
mkl
mpi
'
++ for arg in "$@"
++++++ dirname -- /opt/intel/oneapi/mpi/latest/env/vars.sh
+++++ dirname -- /opt/intel/oneapi/mpi/latest/env
++++ dirname -- /opt/intel/oneapi/mpi/latest
+++ basename -- /opt/intel/oneapi/mpi
++ arg=mpi
++ '[' -r /opt/intel/oneapi/mpi/latest/env/vars.sh ']'
++ temp_array='compiler
compiler
debugger
debugger
dev-utilities
dev-utilities
dpl
dpl
mkl
mkl
mpi
mpi
'
++ for arg in "$@"
++++++ dirname -- /opt/intel/oneapi/tbb/2021.3.0/env/vars.sh
+++++ dirname -- /opt/intel/oneapi/tbb/2021.3.0/env
++++ dirname -- /opt/intel/oneapi/tbb/2021.3.0
+++ basename -- /opt/intel/oneapi/tbb
++ arg=tbb
++ '[' -r /opt/intel/oneapi/tbb/latest/env/vars.sh ']'
++ temp_array='compiler
compiler
debugger
debugger
dev-utilities
dev-utilities
dpl
dpl
mkl
mkl
mpi
mpi
tbb
'
++ for arg in "$@"
++++++ dirname -- /opt/intel/oneapi/tbb/latest/env/vars.sh
+++++ dirname -- /opt/intel/oneapi/tbb/latest/env
++++ dirname -- /opt/intel/oneapi/tbb/latest
+++ basename -- /opt/intel/oneapi/tbb
++ arg=tbb
++ '[' -r /opt/intel/oneapi/tbb/latest/env/vars.sh ']'
++ temp_array='compiler
compiler
debugger
debugger
dev-utilities
dev-utilities
dpl
dpl
mkl
mkl
mpi
mpi
tbb
tbb
'
++ component_array='compiler
compiler
debugger
debugger
dev-utilities
dev-utilities
dpl
dpl
mkl
mkl
mpi
mpi
tbb
tbb
'
+++ printf '%s\n' 'compiler
compiler
debugger
debugger
dev-utilities
dev-utilities
dpl
dpl
mkl
mkl
mpi
mpi
tbb
tbb
'
+++ uniq
++ component_array='compiler
debugger
dev-utilities
dpl
mkl
mpi
tbb'
+++ printf '%s\n' 'compiler
debugger
dev-utilities
dpl
mkl
mpi
tbb'
+++ wc -l
++ temp_var=7
++ '[' 7 -le 0 ']'
++ '[' 0 = 1 ']'
+++ prep_for_eval 'compiler
debugger
dev-utilities
dpl
mkl
mpi
tbb'
+++ echo 'compiler
debugger
dev-utilities
dpl
mkl
mpi
tbb'
+++ awk NF
+++ sed -e 's/^/'\''/g' -e 's/$/'\'' \\/g' -e '$s/\\$//'
++ eval set -- ''\''compiler'\'' \
'\''debugger'\'' \
'\''dev-utilities'\'' \
'\''dpl'\'' \
'\''mkl'\'' \
'\''mpi'\'' \
'\''tbb'\'' '
+++ set -- compiler debugger dev-utilities dpl mkl mpi tbb
++ temp_array=
++ for arg in "$@"
++ arg=compiler=latest
++ temp_array='compiler=latest
'
++ for arg in "$@"
++ arg=debugger=latest
++ temp_array='compiler=latest
debugger=latest
'
++ for arg in "$@"
++ arg=dev-utilities=latest
++ temp_array='compiler=latest
debugger=latest
dev-utilities=latest
'
++ for arg in "$@"
++ arg=dpl=latest
++ temp_array='compiler=latest
debugger=latest
dev-utilities=latest
dpl=latest
'
++ for arg in "$@"
++ arg=mkl=latest
++ temp_array='compiler=latest
debugger=latest
dev-utilities=latest
dpl=latest
mkl=latest
'
++ for arg in "$@"
++ arg=mpi=latest
++ temp_array='compiler=latest
debugger=latest
dev-utilities=latest
dpl=latest
mkl=latest
mpi=latest
'
++ for arg in "$@"
++ arg=tbb=latest
++ temp_array='compiler=latest
debugger=latest
dev-utilities=latest
dpl=latest
mkl=latest
mpi=latest
tbb=latest
'
++ component_array='compiler=latest
debugger=latest
dev-utilities=latest
dpl=latest
mkl=latest
mpi=latest
tbb=latest
'
++ '[' 0 = 1 ']'
+++ printf '%s\n' 'compiler=latest
debugger=latest
dev-utilities=latest
dpl=latest
mkl=latest
mpi=latest
tbb=latest
'
+++ awk NF
++ component_array='compiler=latest
debugger=latest
dev-utilities=latest
dpl=latest
mkl=latest
mpi=latest
tbb=latest'
++ echo ' '
 
++ echo ':: initializing oneAPI environment ...'
:: initializing oneAPI environment ...
++ echo '   jenkins9854201297279893165.sh: BASH_VERSION = 5.0.17(1)-release'
   jenkins9854201297279893165.sh: BASH_VERSION = 5.0.17(1)-release
++ ONEAPI_ROOT=/opt/intel/oneapi
++ export ONEAPI_ROOT
++ SETVARS_CALL=1
++ export SETVARS_CALL
++ '[' -z '' ']'
++ SETVARS_ARGS=
++ export SETVARS_ARGS
++ temp_var=0
+++ prep_for_eval 'compiler=latest
debugger=latest
dev-utilities=latest
dpl=latest
mkl=latest
mpi=latest
tbb=latest'
+++ echo 'compiler=latest
debugger=latest
dev-utilities=latest
dpl=latest
mkl=latest
mpi=latest
tbb=latest'
+++ awk NF
+++ sed -e 's/^/'\''/g' -e 's/$/'\'' \\/g' -e '$s/\\$//'
++ eval set -- ''\''compiler=latest'\'' \
'\''debugger=latest'\'' \
'\''dev-utilities=latest'\'' \
'\''dpl=latest'\'' \
'\''mkl=latest'\'' \
'\''mpi=latest'\'' \
'\''tbb=latest'\'' '
+++ set -- compiler=latest debugger=latest dev-utilities=latest dpl=latest mkl=latest mpi=latest tbb=latest
++ for arg in "$@"
+++ expr compiler=latest : '\(.*\)=.*'
++ arg_base=compiler
+++ expr compiler=latest : '.*=\(.*\)'
++ arg_verz=latest
++ arg_path=/opt/intel/oneapi/compiler/latest/env/vars.sh
++ SETVARS_VARS_PATH=/opt/intel/oneapi/compiler/latest/env/vars.sh
++ export SETVARS_VARS_PATH
++ '[' exclude = latest ']'
++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']'
++ echo ':: compiler -- latest'
:: compiler -- latest
++ . /opt/intel/oneapi/compiler/latest/env/vars.sh 'SETVARS_CALL=1 ' ''
+++ _vars_this_script_name=vars.sh
++++ _vars_get_proc_name /tmp/jenkins9854201297279893165.sh
++++ '[' -n '' ']'
++++ script=/tmp/jenkins9854201297279893165.sh
++++ '[' -L /tmp/jenkins9854201297279893165.sh ']'
++++ basename -- /tmp/jenkins9854201297279893165.sh
+++ '[' vars.sh = jenkins9854201297279893165.sh ']'
+++ vars_script_name=
++++ ps -p 1338345 -o comm=
+++ vars_script_shell=bash
+++ '[' -n '' ']'
+++ '[' -n '' ']'
+++ '[' -n '5.0.17(1)-release' ']'
+++ return 0
+++ vars_script_name=/opt/intel/oneapi/compiler/latest/env/vars.sh
+++ '[' '' = /opt/intel/oneapi/compiler/latest/env/vars.sh ']'
++++ get_script_path /opt/intel/oneapi/compiler/latest/env/vars.sh
++++ script=/opt/intel/oneapi/compiler/latest/env/vars.sh
++++ '[' -L /opt/intel/oneapi/compiler/latest/env/vars.sh ']'
+++++ command dirname -- /opt/intel/oneapi/compiler/latest/env/vars.sh
+++++ dirname -- /opt/intel/oneapi/compiler/latest/env/vars.sh
++++ script_dir=/opt/intel/oneapi/compiler/latest/env
+++++ cd /opt/intel/oneapi/compiler/latest/env
+++++ command pwd -P
+++++ pwd -P
++++ script_dir=/opt/intel/oneapi/compiler/2021.3.0/env
++++ printf %s /opt/intel/oneapi/compiler/2021.3.0/env
+++ my_script_path=/opt/intel/oneapi/compiler/2021.3.0/env
++++ dirname -- /opt/intel/oneapi/compiler/2021.3.0/env
+++ component_root=/opt/intel/oneapi/compiler/2021.3.0
+++ CMPLR_ROOT=/opt/intel/oneapi/compiler/2021.3.0
+++ export CMPLR_ROOT
+++ INTEL_TARGET_ARCH=intel64
+++ INTEL_TARGET_PLATFORM=linux
+++ '[' 2 -gt 0 ']'
+++ case "$1" in
+++ shift
+++ '[' 1 -gt 0 ']'
+++ case "$1" in
+++ shift
+++ '[' 0 -gt 0 ']'
+++ '[' intel64 = ia32 ']'
+++ unset INTEL_TARGET_ARCH_IA32
++++ prepend_path /opt/intel/oneapi/compiler/2021.3.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2021.3.0/linux/bin /home/jenkins/util/fefloa/bin:/home/jenkins/util/valgrind/valgrind-3.17.0/install/bin:/home/jenkins/util/ccache/ccache-4.4/install/bin:/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
++++ path_to_add=/opt/intel/oneapi/compiler/2021.3.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2021.3.0/linux/bin
++++ path_is_now=/home/jenkins/util/fefloa/bin:/home/jenkins/util/valgrind/valgrind-3.17.0/install/bin:/home/jenkins/util/ccache/ccache-4.4/install/bin:/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
++++ '[' '' = /home/jenkins/util/fefloa/bin:/home/jenkins/util/valgrind/valgrind-3.17.0/install/bin:/home/jenkins/util/ccache/ccache-4.4/install/bin:/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin ']'
++++ printf %s /opt/intel/oneapi/compiler/2021.3.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2021.3.0/linux/bin:/home/jenkins/util/fefloa/bin:/home/jenkins/util/valgrind/valgrind-3.17.0/install/bin:/home/jenkins/util/ccache/ccache-4.4/install/bin:/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
+++ PATH=/opt/intel/oneapi/compiler/2021.3.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2021.3.0/linux/bin:/home/jenkins/util/fefloa/bin:/home/jenkins/util/valgrind/valgrind-3.17.0/install/bin:/home/jenkins/util/ccache/ccache-4.4/install/bin:/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
+++ export PATH
++++ prepend_path /opt/intel/oneapi/compiler/2021.3.0/linux/include ''
++++ path_to_add=/opt/intel/oneapi/compiler/2021.3.0/linux/include
++++ path_is_now=
++++ '[' '' = '' ']'
++++ printf %s /opt/intel/oneapi/compiler/2021.3.0/linux/include
+++ CPATH=/opt/intel/oneapi/compiler/2021.3.0/linux/include
+++ export CPATH
+++ '[' intel64 = ia32 ']'
++++ prepend_path /opt/intel/oneapi/compiler/2021.3.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2021.3.0/linux/lib ''
++++ path_to_add=/opt/intel/oneapi/compiler/2021.3.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2021.3.0/linux/lib
++++ path_is_now=
++++ '[' '' = '' ']'
++++ printf %s /opt/intel/oneapi/compiler/2021.3.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2021.3.0/linux/lib
+++ LIBRARY_PATH=/opt/intel/oneapi/compiler/2021.3.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2021.3.0/linux/lib
+++ export LIBRARY_PATH
++++ prepend_path /opt/intel/oneapi/compiler/2021.3.0/linux/compiler/lib/intel64_lin /usr/lib:
++++ path_to_add=/opt/intel/oneapi/compiler/2021.3.0/linux/compiler/lib/intel64_lin
++++ path_is_now=/usr/lib:
++++ '[' '' = /usr/lib: ']'
++++ printf %s /opt/intel/oneapi/compiler/2021.3.0/linux/compiler/lib/intel64_lin:/usr/lib:
+++ LD_LIBRARY_PATH=/opt/intel/oneapi/compiler/2021.3.0/linux/compiler/lib/intel64_lin:/usr/lib:
+++ export LD_LIBRARY_PATH
+++ '[' intel64 = ia32 ']'
+++ '[' -f /opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/fpgavars.sh ']'
+++ FPGA_VARS_DIR=/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga
+++ export FPGA_VARS_DIR
+++ FPGA_VARS_ARGS=
+++ export FPGA_VARS_ARGS
+++ . /opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/fpgavars.sh
++++ SCRIPTDIR=/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga
++++ DISTRO=
++++ DISTRO_STATUS=-1
++++ RELEASE=
++++ RELEASE_STATUS=-1
++++ SUPPORTED_OS=0
++++ command -v lsb_release
+++++ lsb_release -is
++++ DISTRO=Ubuntu
++++ DISTRO_STATUS=0
+++++ lsb_release -rs
++++ RELEASE=20.04
++++ RELEASE_STATUS=0
+++++ echo Ubuntu
+++++ tr '[:upper:]' '[:lower:]'
++++ DISTRO=ubuntu
++++ '[' 0 = 0 ']'
++++ '[' 0 = 0 ']'
++++ '[' ubuntu = redhatenterpriseserver ']'
++++ '[' ubuntu = redhatenterprise ']'
++++ '[' ubuntu = rhel ']'
++++ '[' ubuntu = centos ']'
++++ '[' ubuntu = ubuntu ']'
++++ case "$RELEASE" in
++++ SUPPORTED_OS=1
++++ '[' ubuntu = suse ']'
++++ '[' ubuntu = opensuse ']'
++++ '[' 1 -eq 1 ']'
++++ icdadd libalteracl.so
++++ '[' -z '' ']'
++++ export OCL_ICD_FILENAMES=libalteracl.so
++++ OCL_ICD_FILENAMES=libalteracl.so
++++ icdadd libintelocl_emu.so
++++ '[' -z x ']'
++++ case ":$OCL_ICD_FILENAMES:" in
++++ export OCL_ICD_FILENAMES=libintelocl_emu.so:libalteracl.so
++++ OCL_ICD_FILENAMES=libintelocl_emu.so:libalteracl.so
++++ export ACL_BOARD_VENDOR_PATH=/opt/Intel/OpenCLFPGA/oneAPI/Boards
++++ ACL_BOARD_VENDOR_PATH=/opt/Intel/OpenCLFPGA/oneAPI/Boards
++++ export INTELFPGAOCLSDKROOT=/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga
++++ INTELFPGAOCLSDKROOT=/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga
++++ . /opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/init_opencl.sh
+++++ '[' -z x ']'
+++++ echo 'INTELFPGAOCLSDKROOT is set to /opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga. Using that.'
+++++ echo
+++++ '[' '!' -d /opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga ']'
+++++ '[' '!' -f /opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/bin/aoc ']'
+++++ RTE_ONLY=0
+++++ ARCH=
+++++ '[' -z '' ']'
++++++ uname -m
+++++ ARCH=x86_64
+++++ arch_type=
+++++ case $ARCH in
+++++ arch_type=linux64
+++++ '[' 0 = 0 ']'
+++++ '[' -d '' ']'
+++++ '[' -d '' ']'
+++++ '[' -d /opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/../quartus ']'
+++++ '[' -d /opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/../../quartus ']'
+++++ '[' -d '' ']'
+++++ command -v quartus_sh
+++++ echo 'Warning: Quartus (quartus_sh) is not on the path!  Without Quartus you will not be able to run full compiles.'
+++++ echo
+++++ pathadd /opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/bin
+++++ echo 'Adding /opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/bin to PATH'
+++++ '[' -d /opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/bin ']'
+++++ '[' -z x ']'
+++++ case ":$PATH:" in
+++++ export PATH=/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2021.3.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2021.3.0/linux/bin:/home/jenkins/util/fefloa/bin:/home/jenkins/util/valgrind/valgrind-3.17.0/install/bin:/home/jenkins/util/ccache/ccache-4.4/install/bin:/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
+++++ PATH=/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2021.3.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2021.3.0/linux/bin:/home/jenkins/util/fefloa/bin:/home/jenkins/util/valgrind/valgrind-3.17.0/install/bin:/home/jenkins/util/ccache/ccache-4.4/install/bin:/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
+++++ pathadd /opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/llvm/aocl-bin
+++++ echo 'Adding /opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/llvm/aocl-bin to PATH'
+++++ '[' -d /opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/llvm/aocl-bin ']'
+++++ '[' -z x ']'
+++++ case ":$PATH:" in
+++++ export PATH=/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/llvm/aocl-bin:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2021.3.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2021.3.0/linux/bin:/home/jenkins/util/fefloa/bin:/home/jenkins/util/valgrind/valgrind-3.17.0/install/bin:/home/jenkins/util/ccache/ccache-4.4/install/bin:/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
+++++ PATH=/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/llvm/aocl-bin:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2021.3.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2021.3.0/linux/bin:/home/jenkins/util/fefloa/bin:/home/jenkins/util/valgrind/valgrind-3.17.0/install/bin:/home/jenkins/util/ccache/ccache-4.4/install/bin:/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
+++++ ldpathadd /opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/linux64/lib
+++++ echo 'Adding /opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/linux64/lib to LD_LIBRARY_PATH'
+++++ '[' -d /opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/linux64/lib ']'
+++++ '[' -z x ']'
+++++ case ":$LD_LIBRARY_PATH:" in
+++++ export LD_LIBRARY_PATH=/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/compiler/lib/intel64_lin:/usr/lib:
+++++ LD_LIBRARY_PATH=/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/compiler/lib/intel64_lin:/usr/lib:
+++++ ldpathadd /opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/host/linux64/lib
+++++ echo 'Adding /opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/host/linux64/lib to LD_LIBRARY_PATH'
+++++ '[' -d /opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/host/linux64/lib ']'
+++++ '[' -z x ']'
+++++ case ":$LD_LIBRARY_PATH:" in
+++++ export LD_LIBRARY_PATH=/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/compiler/lib/intel64_lin:/usr/lib:
+++++ LD_LIBRARY_PATH=/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/compiler/lib/intel64_lin:/usr/lib:
+++++ '[' '' '!=' '' ']'
+++++ '[' 0 = 0 ']'
+++++ command -v aoc
+++++ unset RTE_ONLY
++++ for BSP in intel_a10gx_pac intel_s10sx_pac
++++ '[' -n '' ']'
++++ '[' -f /opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/board/intel_a10gx_pac/linux64/libexec/pac_bsp_init.sh ']'
++++ /opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/board/intel_a10gx_pac/linux64/libexec/pac_bsp_init.sh
++++ true
++++ for BSP in intel_a10gx_pac intel_s10sx_pac
++++ '[' -n '' ']'
++++ '[' -f /opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/board/intel_s10sx_pac/linux64/libexec/pac_bsp_init.sh ']'
++++ /opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/board/intel_s10sx_pac/linux64/libexec/pac_bsp_init.sh
++++ true
++++ prepend_path /opt/intel/oneapi/compiler/2021.3.0/linux/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/x64:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/emu /opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/compiler/lib/intel64_lin:/usr/lib:
++++ path_to_add=/opt/intel/oneapi/compiler/2021.3.0/linux/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/x64:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/emu
++++ path_is_now=/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/compiler/lib/intel64_lin:/usr/lib:
++++ '[' '' = /opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/compiler/lib/intel64_lin:/usr/lib: ']'
++++ printf %s /opt/intel/oneapi/compiler/2021.3.0/linux/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/x64:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/emu:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/compiler/lib/intel64_lin:/usr/lib:
+++ LD_LIBRARY_PATH=/opt/intel/oneapi/compiler/2021.3.0/linux/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/x64:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/emu:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/compiler/lib/intel64_lin:/usr/lib:
+++ export LD_LIBRARY_PATH
+++ '[' -z libintelocl_emu.so:libalteracl.so ']'
+++ OCL_ICD_FILENAMES=libintelocl_emu.so:libalteracl.so:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/x64/libintelocl.so
+++ export OCL_ICD_FILENAMES
++++ prepend_manpath /opt/intel/oneapi/compiler/2021.3.0/documentation/en/man/common ''
++++ path_to_add=/opt/intel/oneapi/compiler/2021.3.0/documentation/en/man/common
++++ path_is_now=
++++ '[' '' = '' ']'
++++ printf %s /opt/intel/oneapi/compiler/2021.3.0/documentation/en/man/common:
+++ MANPATH=/opt/intel/oneapi/compiler/2021.3.0/documentation/en/man/common:
+++ export MANPATH
++ temp_var=1
++ for arg in "$@"
+++ expr debugger=latest : '\(.*\)=.*'
++ arg_base=debugger
+++ expr debugger=latest : '.*=\(.*\)'
++ arg_verz=latest
++ arg_path=/opt/intel/oneapi/debugger/latest/env/vars.sh
++ SETVARS_VARS_PATH=/opt/intel/oneapi/debugger/latest/env/vars.sh
++ export SETVARS_VARS_PATH
++ '[' exclude = latest ']'
++ '[' -r /opt/intel/oneapi/debugger/latest/env/vars.sh ']'
++ echo ':: debugger -- latest'
:: debugger -- latest
++ . /opt/intel/oneapi/debugger/latest/env/vars.sh 'SETVARS_CALL=1 ' ''
+++ _vars_this_script_name=vars.sh
++++ _vars_get_proc_name /tmp/jenkins9854201297279893165.sh
++++ '[' -n '' ']'
++++ script=/tmp/jenkins9854201297279893165.sh
++++ '[' -L /tmp/jenkins9854201297279893165.sh ']'
++++ basename -- /tmp/jenkins9854201297279893165.sh
+++ '[' vars.sh = jenkins9854201297279893165.sh ']'
+++ vars_script_name=
++++ ps -p 1338345 -o comm=
+++ vars_script_shell=bash
+++ '[' -n '' ']'
+++ '[' -n '' ']'
+++ '[' -n '5.0.17(1)-release' ']'
+++ return 0
+++ vars_script_name=/opt/intel/oneapi/debugger/latest/env/vars.sh
+++ '[' '' = /opt/intel/oneapi/debugger/latest/env/vars.sh ']'
++++ get_script_path /opt/intel/oneapi/debugger/latest/env/vars.sh
++++ script=/opt/intel/oneapi/debugger/latest/env/vars.sh
++++ '[' -L /opt/intel/oneapi/debugger/latest/env/vars.sh ']'
+++++ command dirname -- /opt/intel/oneapi/debugger/latest/env/vars.sh
+++++ dirname -- /opt/intel/oneapi/debugger/latest/env/vars.sh
++++ script_dir=/opt/intel/oneapi/debugger/latest/env
+++++ cd /opt/intel/oneapi/debugger/latest/env
+++++ command pwd -P
+++++ pwd -P
++++ script_dir=/opt/intel/oneapi/debugger/10.1.2/env
++++ printf %s /opt/intel/oneapi/debugger/10.1.2/env
+++ my_script_path=/opt/intel/oneapi/debugger/10.1.2/env
++++ dirname -- /opt/intel/oneapi/debugger/10.1.2/env
+++ gdb_root=/opt/intel/oneapi/debugger/10.1.2
+++ my_ld_path=/opt/intel/oneapi/debugger/10.1.2/gdb/intel64/lib:/opt/intel/oneapi/debugger/10.1.2/libipt/intel64/lib:/opt/intel/oneapi/debugger/10.1.2/dep/lib
++++ prepend_path /opt/intel/oneapi/debugger/10.1.2/gdb/intel64/bin /opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/llvm/aocl-bin:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2021.3.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2021.3.0/linux/bin:/home/jenkins/util/fefloa/bin:/home/jenkins/util/valgrind/valgrind-3.17.0/install/bin:/home/jenkins/util/ccache/ccache-4.4/install/bin:/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
++++ path_to_add=/opt/intel/oneapi/debugger/10.1.2/gdb/intel64/bin
++++ path_is_now=/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/llvm/aocl-bin:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2021.3.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2021.3.0/linux/bin:/home/jenkins/util/fefloa/bin:/home/jenkins/util/valgrind/valgrind-3.17.0/install/bin:/home/jenkins/util/ccache/ccache-4.4/install/bin:/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
++++ '[' '' = /opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/llvm/aocl-bin:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2021.3.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2021.3.0/linux/bin:/home/jenkins/util/fefloa/bin:/home/jenkins/util/valgrind/valgrind-3.17.0/install/bin:/home/jenkins/util/ccache/ccache-4.4/install/bin:/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin ']'
++++ printf %s /opt/intel/oneapi/debugger/10.1.2/gdb/intel64/bin:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/llvm/aocl-bin:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2021.3.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2021.3.0/linux/bin:/home/jenkins/util/fefloa/bin:/home/jenkins/util/valgrind/valgrind-3.17.0/install/bin:/home/jenkins/util/ccache/ccache-4.4/install/bin:/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
+++ PATH=/opt/intel/oneapi/debugger/10.1.2/gdb/intel64/bin:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/llvm/aocl-bin:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2021.3.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2021.3.0/linux/bin:/home/jenkins/util/fefloa/bin:/home/jenkins/util/valgrind/valgrind-3.17.0/install/bin:/home/jenkins/util/ccache/ccache-4.4/install/bin:/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
+++ export PATH
++++ prepend_path /opt/intel/oneapi/debugger/10.1.2/dep ''
++++ path_to_add=/opt/intel/oneapi/debugger/10.1.2/dep
++++ path_is_now=
++++ '[' '' = '' ']'
++++ printf %s /opt/intel/oneapi/debugger/10.1.2/dep
+++ INTEL_PYTHONHOME=/opt/intel/oneapi/debugger/10.1.2/dep
+++ export INTEL_PYTHONHOME
++++ prepend_path /opt/intel/oneapi/debugger/10.1.2/gdb/intel64/lib:/opt/intel/oneapi/debugger/10.1.2/libipt/intel64/lib:/opt/intel/oneapi/debugger/10.1.2/dep/lib /opt/intel/oneapi/compiler/2021.3.0/linux/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/x64:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/emu:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/compiler/lib/intel64_lin:/usr/lib:
++++ path_to_add=/opt/intel/oneapi/debugger/10.1.2/gdb/intel64/lib:/opt/intel/oneapi/debugger/10.1.2/libipt/intel64/lib:/opt/intel/oneapi/debugger/10.1.2/dep/lib
++++ path_is_now=/opt/intel/oneapi/compiler/2021.3.0/linux/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/x64:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/emu:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/compiler/lib/intel64_lin:/usr/lib:
++++ '[' '' = /opt/intel/oneapi/compiler/2021.3.0/linux/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/x64:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/emu:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/compiler/lib/intel64_lin:/usr/lib: ']'
++++ printf %s /opt/intel/oneapi/debugger/10.1.2/gdb/intel64/lib:/opt/intel/oneapi/debugger/10.1.2/libipt/intel64/lib:/opt/intel/oneapi/debugger/10.1.2/dep/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/x64:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/emu:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/compiler/lib/intel64_lin:/usr/lib:
+++ LD_LIBRARY_PATH=/opt/intel/oneapi/debugger/10.1.2/gdb/intel64/lib:/opt/intel/oneapi/debugger/10.1.2/libipt/intel64/lib:/opt/intel/oneapi/debugger/10.1.2/dep/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/x64:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/emu:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/compiler/lib/intel64_lin:/usr/lib:
+++ export LD_LIBRARY_PATH
++++ prepend_manpath /opt/intel/oneapi/debugger/10.1.2/documentation/man /opt/intel/oneapi/compiler/2021.3.0/documentation/en/man/common:
++++ path_to_add=/opt/intel/oneapi/debugger/10.1.2/documentation/man
++++ path_is_now=/opt/intel/oneapi/compiler/2021.3.0/documentation/en/man/common:
++++ '[' '' = /opt/intel/oneapi/compiler/2021.3.0/documentation/en/man/common: ']'
++++ printf %s /opt/intel/oneapi/debugger/10.1.2/documentation/man:/opt/intel/oneapi/compiler/2021.3.0/documentation/en/man/common:
+++ MANPATH=/opt/intel/oneapi/debugger/10.1.2/documentation/man:/opt/intel/oneapi/compiler/2021.3.0/documentation/en/man/common:
+++ export MANPATH
++++ prepend_path /opt/intel/oneapi/debugger/10.1.2/gdb/intel64/lib ''
++++ path_to_add=/opt/intel/oneapi/debugger/10.1.2/gdb/intel64/lib
++++ path_is_now=
++++ '[' '' = '' ']'
++++ printf %s /opt/intel/oneapi/debugger/10.1.2/gdb/intel64/lib
+++ INFOPATH=/opt/intel/oneapi/debugger/10.1.2/gdb/intel64/lib
+++ export INFOPATH
++ temp_var=2
++ for arg in "$@"
+++ expr dev-utilities=latest : '\(.*\)=.*'
++ arg_base=dev-utilities
+++ expr dev-utilities=latest : '.*=\(.*\)'
++ arg_verz=latest
++ arg_path=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh
++ SETVARS_VARS_PATH=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh
++ export SETVARS_VARS_PATH
++ '[' exclude = latest ']'
++ '[' -r /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']'
++ echo ':: dev-utilities -- latest'
:: dev-utilities -- latest
++ . /opt/intel/oneapi/dev-utilities/latest/env/vars.sh 'SETVARS_CALL=1 ' ''
+++ _vars_this_script_name=vars.sh
++++ _vars_get_proc_name /tmp/jenkins9854201297279893165.sh
++++ '[' -n '' ']'
++++ script=/tmp/jenkins9854201297279893165.sh
++++ '[' -L /tmp/jenkins9854201297279893165.sh ']'
++++ basename -- /tmp/jenkins9854201297279893165.sh
+++ '[' vars.sh = jenkins9854201297279893165.sh ']'
+++ vars_script_name=
++++ ps -p 1338345 -o comm=
+++ vars_script_shell=bash
+++ '[' -n '' ']'
+++ '[' -n '' ']'
+++ '[' -n '5.0.17(1)-release' ']'
+++ return 0
+++ vars_script_name=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh
+++ '[' '' = /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']'
++++ get_script_path /opt/intel/oneapi/dev-utilities/latest/env/vars.sh
++++ script=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh
++++ '[' -L /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']'
+++++ command dirname -- /opt/intel/oneapi/dev-utilities/latest/env/vars.sh
+++++ dirname -- /opt/intel/oneapi/dev-utilities/latest/env/vars.sh
++++ script_dir=/opt/intel/oneapi/dev-utilities/latest/env
+++++ cd /opt/intel/oneapi/dev-utilities/latest/env
+++++ command pwd -P
+++++ pwd -P
++++ script_dir=/opt/intel/oneapi/dev-utilities/2021.3.0/env
++++ printf %s /opt/intel/oneapi/dev-utilities/2021.3.0/env
+++ vars_script_path=/opt/intel/oneapi/dev-utilities/2021.3.0/env
++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.3.0/env
+++ component_root=/opt/intel/oneapi/dev-utilities/2021.3.0
++++ prepend_path /opt/intel/oneapi/dev-utilities/2021.3.0/bin /opt/intel/oneapi/debugger/10.1.2/gdb/intel64/bin:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/llvm/aocl-bin:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2021.3.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2021.3.0/linux/bin:/home/jenkins/util/fefloa/bin:/home/jenkins/util/valgrind/valgrind-3.17.0/install/bin:/home/jenkins/util/ccache/ccache-4.4/install/bin:/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
++++ path_to_add=/opt/intel/oneapi/dev-utilities/2021.3.0/bin
++++ path_is_now=/opt/intel/oneapi/debugger/10.1.2/gdb/intel64/bin:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/llvm/aocl-bin:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2021.3.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2021.3.0/linux/bin:/home/jenkins/util/fefloa/bin:/home/jenkins/util/valgrind/valgrind-3.17.0/install/bin:/home/jenkins/util/ccache/ccache-4.4/install/bin:/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
++++ '[' '' = /opt/intel/oneapi/debugger/10.1.2/gdb/intel64/bin:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/llvm/aocl-bin:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2021.3.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2021.3.0/linux/bin:/home/jenkins/util/fefloa/bin:/home/jenkins/util/valgrind/valgrind-3.17.0/install/bin:/home/jenkins/util/ccache/ccache-4.4/install/bin:/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin ']'
++++ printf %s /opt/intel/oneapi/dev-utilities/2021.3.0/bin:/opt/intel/oneapi/debugger/10.1.2/gdb/intel64/bin:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/llvm/aocl-bin:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2021.3.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2021.3.0/linux/bin:/home/jenkins/util/fefloa/bin:/home/jenkins/util/valgrind/valgrind-3.17.0/install/bin:/home/jenkins/util/ccache/ccache-4.4/install/bin:/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
+++ PATH=/opt/intel/oneapi/dev-utilities/2021.3.0/bin:/opt/intel/oneapi/debugger/10.1.2/gdb/intel64/bin:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/llvm/aocl-bin:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2021.3.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2021.3.0/linux/bin:/home/jenkins/util/fefloa/bin:/home/jenkins/util/valgrind/valgrind-3.17.0/install/bin:/home/jenkins/util/ccache/ccache-4.4/install/bin:/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
+++ export PATH
++++ prepend_path /opt/intel/oneapi/dev-utilities/2021.3.0/include /opt/intel/oneapi/compiler/2021.3.0/linux/include
++++ path_to_add=/opt/intel/oneapi/dev-utilities/2021.3.0/include
++++ path_is_now=/opt/intel/oneapi/compiler/2021.3.0/linux/include
++++ '[' '' = /opt/intel/oneapi/compiler/2021.3.0/linux/include ']'
++++ printf %s /opt/intel/oneapi/dev-utilities/2021.3.0/include:/opt/intel/oneapi/compiler/2021.3.0/linux/include
+++ CPATH=/opt/intel/oneapi/dev-utilities/2021.3.0/include:/opt/intel/oneapi/compiler/2021.3.0/linux/include
+++ export CPATH
++ temp_var=3
++ for arg in "$@"
+++ expr dpl=latest : '\(.*\)=.*'
++ arg_base=dpl
+++ expr dpl=latest : '.*=\(.*\)'
++ arg_verz=latest
++ arg_path=/opt/intel/oneapi/dpl/latest/env/vars.sh
++ SETVARS_VARS_PATH=/opt/intel/oneapi/dpl/latest/env/vars.sh
++ export SETVARS_VARS_PATH
++ '[' exclude = latest ']'
++ '[' -r /opt/intel/oneapi/dpl/latest/env/vars.sh ']'
++ echo ':: dpl -- latest'
:: dpl -- latest
++ . /opt/intel/oneapi/dpl/latest/env/vars.sh 'SETVARS_CALL=1 ' ''
+++ _vars_this_script_name=vars.sh
++++ _vars_get_proc_name /tmp/jenkins9854201297279893165.sh
++++ '[' -n '' ']'
++++ script=/tmp/jenkins9854201297279893165.sh
++++ '[' -L /tmp/jenkins9854201297279893165.sh ']'
++++ basename -- /tmp/jenkins9854201297279893165.sh
+++ '[' vars.sh = jenkins9854201297279893165.sh ']'
+++ vars_script_name=
++++ ps -p 1338345 -o comm=
+++ vars_script_shell=bash
+++ '[' -n '' ']'
+++ '[' -n '' ']'
+++ '[' -n '5.0.17(1)-release' ']'
+++ return 0
+++ vars_script_name=/opt/intel/oneapi/dpl/latest/env/vars.sh
+++ '[' '' = /opt/intel/oneapi/dpl/latest/env/vars.sh ']'
++++ get_script_path /opt/intel/oneapi/dpl/latest/env/vars.sh
++++ script=/opt/intel/oneapi/dpl/latest/env/vars.sh
++++ '[' -L /opt/intel/oneapi/dpl/latest/env/vars.sh ']'
+++++ command dirname -- /opt/intel/oneapi/dpl/latest/env/vars.sh
+++++ dirname -- /opt/intel/oneapi/dpl/latest/env/vars.sh
++++ script_dir=/opt/intel/oneapi/dpl/latest/env
+++++ cd /opt/intel/oneapi/dpl/latest/env
+++++ command pwd -P
+++++ pwd -P
++++ script_dir=/opt/intel/oneapi/dpl/2021.4.0/env
++++ printf %s /opt/intel/oneapi/dpl/2021.4.0/env
+++ my_script_path=/opt/intel/oneapi/dpl/2021.4.0/env
++++ dirname -- /opt/intel/oneapi/dpl/2021.4.0/env
+++ component_root=/opt/intel/oneapi/dpl/2021.4.0
+++ DPL_ROOT=/opt/intel/oneapi/dpl/2021.4.0
+++ export DPL_ROOT
+++ INTEL_TARGET_PLATFORM=linux
++++ prepend_path /opt/intel/oneapi/dpl/2021.4.0/linux/include /opt/intel/oneapi/dev-utilities/2021.3.0/include:/opt/intel/oneapi/compiler/2021.3.0/linux/include
++++ path_to_add=/opt/intel/oneapi/dpl/2021.4.0/linux/include
++++ path_is_now=/opt/intel/oneapi/dev-utilities/2021.3.0/include:/opt/intel/oneapi/compiler/2021.3.0/linux/include
++++ '[' '' = /opt/intel/oneapi/dev-utilities/2021.3.0/include:/opt/intel/oneapi/compiler/2021.3.0/linux/include ']'
++++ printf %s /opt/intel/oneapi/dpl/2021.4.0/linux/include:/opt/intel/oneapi/dev-utilities/2021.3.0/include:/opt/intel/oneapi/compiler/2021.3.0/linux/include
+++ CPATH=/opt/intel/oneapi/dpl/2021.4.0/linux/include:/opt/intel/oneapi/dev-utilities/2021.3.0/include:/opt/intel/oneapi/compiler/2021.3.0/linux/include
+++ export CPATH
++ temp_var=4
++ for arg in "$@"
+++ expr mkl=latest : '\(.*\)=.*'
++ arg_base=mkl
+++ expr mkl=latest : '.*=\(.*\)'
++ arg_verz=latest
++ arg_path=/opt/intel/oneapi/mkl/latest/env/vars.sh
++ SETVARS_VARS_PATH=/opt/intel/oneapi/mkl/latest/env/vars.sh
++ export SETVARS_VARS_PATH
++ '[' exclude = latest ']'
++ '[' -r /opt/intel/oneapi/mkl/latest/env/vars.sh ']'
++ echo ':: mkl -- latest'
:: mkl -- latest
++ . /opt/intel/oneapi/mkl/latest/env/vars.sh 'SETVARS_CALL=1 ' ''
+++ _vars_this_script_name=vars.sh
++++ _vars_get_proc_name /tmp/jenkins9854201297279893165.sh
++++ '[' -n '' ']'
++++ script=/tmp/jenkins9854201297279893165.sh
++++ '[' -L /tmp/jenkins9854201297279893165.sh ']'
++++ basename -- /tmp/jenkins9854201297279893165.sh
+++ '[' vars.sh = jenkins9854201297279893165.sh ']'
+++ vars_script_name=
++++ ps -p 1338345 -o comm=
+++ vars_script_shell=bash
+++ '[' -n '' ']'
+++ '[' -n '' ']'
+++ '[' -n '5.0.17(1)-release' ']'
+++ return 0
+++ vars_script_name=/opt/intel/oneapi/mkl/latest/env/vars.sh
+++ '[' '' = /opt/intel/oneapi/mkl/latest/env/vars.sh ']'
++++ basename -- /opt/intel/oneapi/mkl/latest/env/vars.sh
+++ my_script_name=vars.sh
++++ get_script_path /opt/intel/oneapi/mkl/latest/env/vars.sh
++++ script=/opt/intel/oneapi/mkl/latest/env/vars.sh
++++ '[' -L /opt/intel/oneapi/mkl/latest/env/vars.sh ']'
+++++ command dirname -- /opt/intel/oneapi/mkl/latest/env/vars.sh
+++++ dirname -- /opt/intel/oneapi/mkl/latest/env/vars.sh
++++ script_dir=/opt/intel/oneapi/mkl/latest/env
+++++ cd /opt/intel/oneapi/mkl/latest/env
+++++ command pwd -P
+++++ pwd -P
++++ script_dir=/opt/intel/oneapi/mkl/2021.3.0/env
++++ printf %s /opt/intel/oneapi/mkl/2021.3.0/env
+++ my_script_path=/opt/intel/oneapi/mkl/2021.3.0/env
++++ dirname -- /opt/intel/oneapi/mkl/2021.3.0/env
+++ MKLROOT=/opt/intel/oneapi/mkl/2021.3.0
+++ export MKLROOT
+++ __mkl_tmp_SCRIPT_NAME=vars.sh
+++ __mkl_tmp_MOD_NAME=mod
+++ __mkl_tmp_TARGET_ARCH=intel64
+++ __mkl_tmp_LP64_ILP64=
+++ __mkl_tmp_MOD=
+++ __mkl_tmp_MKLVARS_VERBOSE=
+++ __mkl_help=
+++ '[' -z 'SETVARS_CALL=1 ' ']'
+++ '[' -n 'SETVARS_CALL=1 ' ']'
+++ '[' 'SETVARS_CALL=1 ' = ia32 ']'
+++ '[' 'SETVARS_CALL=1 ' = intel64 ']'
+++ '[' 'SETVARS_CALL=1 ' = lp64 ']'
+++ '[' 'SETVARS_CALL=1 ' = ilp64 ']'
+++ '[' 'SETVARS_CALL=1 ' = mod ']'
+++ '[' 'SETVARS_CALL=1 ' = verbose ']'
+++ '[' 'SETVARS_CALL=1 ' = help ']'
+++ shift
+++ '[' -n '' ']'
+++ '[' -z '' ']'
+++ __mkl_lib_dir=/opt/intel/oneapi/mkl/2021.3.0/lib
+++ __cpath=/opt/intel/oneapi/mkl/2021.3.0/include
+++ __mkl_bin_dir=/opt/intel/oneapi/mkl/2021.3.0/bin
+++ __ld_library_path=/opt/intel/oneapi/mkl/2021.3.0/lib/intel64
+++ __library_path=/opt/intel/oneapi/mkl/2021.3.0/lib/intel64
+++ __path=/opt/intel/oneapi/mkl/2021.3.0/bin/intel64
+++ __nlspath=/opt/intel/oneapi/mkl/2021.3.0/lib/intel64/locale/%l_%t/%N
+++ '[' '' = mod ']'
+++ export LD_LIBRARY_PATH=/opt/intel/oneapi/mkl/2021.3.0/lib/intel64:/opt/intel/oneapi/debugger/10.1.2/gdb/intel64/lib:/opt/intel/oneapi/debugger/10.1.2/libipt/intel64/lib:/opt/intel/oneapi/debugger/10.1.2/dep/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/x64:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/emu:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/compiler/lib/intel64_lin:/usr/lib:
+++ LD_LIBRARY_PATH=/opt/intel/oneapi/mkl/2021.3.0/lib/intel64:/opt/intel/oneapi/debugger/10.1.2/gdb/intel64/lib:/opt/intel/oneapi/debugger/10.1.2/libipt/intel64/lib:/opt/intel/oneapi/debugger/10.1.2/dep/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/x64:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/emu:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/compiler/lib/intel64_lin:/usr/lib:
+++ export LIBRARY_PATH=/opt/intel/oneapi/mkl/2021.3.0/lib/intel64:/opt/intel/oneapi/compiler/2021.3.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2021.3.0/linux/lib
+++ LIBRARY_PATH=/opt/intel/oneapi/mkl/2021.3.0/lib/intel64:/opt/intel/oneapi/compiler/2021.3.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2021.3.0/linux/lib
+++ export NLSPATH=/opt/intel/oneapi/mkl/2021.3.0/lib/intel64/locale/%l_%t/%N
+++ NLSPATH=/opt/intel/oneapi/mkl/2021.3.0/lib/intel64/locale/%l_%t/%N
+++ export CPATH=/opt/intel/oneapi/mkl/2021.3.0/include:/opt/intel/oneapi/dpl/2021.4.0/linux/include:/opt/intel/oneapi/dev-utilities/2021.3.0/include:/opt/intel/oneapi/compiler/2021.3.0/linux/include
+++ CPATH=/opt/intel/oneapi/mkl/2021.3.0/include:/opt/intel/oneapi/dpl/2021.4.0/linux/include:/opt/intel/oneapi/dev-utilities/2021.3.0/include:/opt/intel/oneapi/compiler/2021.3.0/linux/include
+++ export PATH=/opt/intel/oneapi/mkl/2021.3.0/bin/intel64:/opt/intel/oneapi/dev-utilities/2021.3.0/bin:/opt/intel/oneapi/debugger/10.1.2/gdb/intel64/bin:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/llvm/aocl-bin:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2021.3.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2021.3.0/linux/bin:/home/jenkins/util/fefloa/bin:/home/jenkins/util/valgrind/valgrind-3.17.0/install/bin:/home/jenkins/util/ccache/ccache-4.4/install/bin:/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
+++ PATH=/opt/intel/oneapi/mkl/2021.3.0/bin/intel64:/opt/intel/oneapi/dev-utilities/2021.3.0/bin:/opt/intel/oneapi/debugger/10.1.2/gdb/intel64/bin:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/llvm/aocl-bin:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2021.3.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2021.3.0/linux/bin:/home/jenkins/util/fefloa/bin:/home/jenkins/util/valgrind/valgrind-3.17.0/install/bin:/home/jenkins/util/ccache/ccache-4.4/install/bin:/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
+++ export PKG_CONFIG_PATH=/opt/intel/oneapi/mkl/2021.3.0/tools/pkgconfig
+++ PKG_CONFIG_PATH=/opt/intel/oneapi/mkl/2021.3.0/tools/pkgconfig
+++ '[' '' = verbose ']'
++ temp_var=5
++ for arg in "$@"
+++ expr mpi=latest : '\(.*\)=.*'
++ arg_base=mpi
+++ expr mpi=latest : '.*=\(.*\)'
++ arg_verz=latest
++ arg_path=/opt/intel/oneapi/mpi/latest/env/vars.sh
++ SETVARS_VARS_PATH=/opt/intel/oneapi/mpi/latest/env/vars.sh
++ export SETVARS_VARS_PATH
++ '[' exclude = latest ']'
++ '[' -r /opt/intel/oneapi/mpi/latest/env/vars.sh ']'
++ echo ':: mpi -- latest'
:: mpi -- latest
++ . /opt/intel/oneapi/mpi/latest/env/vars.sh 'SETVARS_CALL=1 ' ''
+++ _vars_this_script_name=vars.sh
++++ _vars_get_proc_name /tmp/jenkins9854201297279893165.sh
++++ '[' -n '' ']'
++++ script=/tmp/jenkins9854201297279893165.sh
++++ '[' -L /tmp/jenkins9854201297279893165.sh ']'
++++ basename -- /tmp/jenkins9854201297279893165.sh
+++ '[' vars.sh = jenkins9854201297279893165.sh ']'
+++ vars_script_name=
++++ ps -p 1338345 -o comm=
+++ vars_script_shell=bash
+++ '[' -n '' ']'
+++ '[' -n '' ']'
+++ '[' -n '5.0.17(1)-release' ']'
+++ return 0
+++ vars_script_name=/opt/intel/oneapi/mpi/latest/env/vars.sh
+++ '[' '' = /opt/intel/oneapi/mpi/latest/env/vars.sh ']'
++++ get_script_path /opt/intel/oneapi/mpi/latest/env/vars.sh
++++ script=/opt/intel/oneapi/mpi/latest/env/vars.sh
++++ '[' -L /opt/intel/oneapi/mpi/latest/env/vars.sh ']'
+++++ command dirname -- /opt/intel/oneapi/mpi/latest/env/vars.sh
+++++ dirname -- /opt/intel/oneapi/mpi/latest/env/vars.sh
++++ script_dir=/opt/intel/oneapi/mpi/latest/env
+++++ cd /opt/intel/oneapi/mpi/latest/env
+++++ command pwd -P
+++++ pwd -P
++++ script_dir=/opt/intel/oneapi/mpi/2021.3.0/env
++++ printf %s /opt/intel/oneapi/mpi/2021.3.0/env
+++ MPIVARS_DIR=/opt/intel/oneapi/mpi/2021.3.0/env
++++ cd /opt/intel/oneapi/mpi/2021.3.0/env/..
++++ pwd
+++ I_MPI_ROOT=/opt/intel/oneapi/mpi/2021.3.0
+++ export I_MPI_ROOT
+++ PLATFORM=
+++ '[' -z /opt/intel/oneapi/mkl/2021.3.0/bin/intel64:/opt/intel/oneapi/dev-utilities/2021.3.0/bin:/opt/intel/oneapi/debugger/10.1.2/gdb/intel64/bin:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/llvm/aocl-bin:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2021.3.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2021.3.0/linux/bin:/home/jenkins/util/fefloa/bin:/home/jenkins/util/valgrind/valgrind-3.17.0/install/bin:/home/jenkins/util/ccache/ccache-4.4/install/bin:/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin ']'
+++ PATH=/opt/intel/oneapi/mpi/2021.3.0//bin:/opt/intel/oneapi/mkl/2021.3.0/bin/intel64:/opt/intel/oneapi/dev-utilities/2021.3.0/bin:/opt/intel/oneapi/debugger/10.1.2/gdb/intel64/bin:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/llvm/aocl-bin:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2021.3.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2021.3.0/linux/bin:/home/jenkins/util/fefloa/bin:/home/jenkins/util/valgrind/valgrind-3.17.0/install/bin:/home/jenkins/util/ccache/ccache-4.4/install/bin:/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
+++ export PATH
+++ '[' -z '' ']'
+++ CLASSPATH=/opt/intel/oneapi/mpi/2021.3.0//lib/mpi.jar
+++ export CLASSPATH
+++ '[' -z /opt/intel/oneapi/mkl/2021.3.0/lib/intel64:/opt/intel/oneapi/debugger/10.1.2/gdb/intel64/lib:/opt/intel/oneapi/debugger/10.1.2/libipt/intel64/lib:/opt/intel/oneapi/debugger/10.1.2/dep/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/x64:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/emu:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/compiler/lib/intel64_lin:/usr/lib: ']'
+++ LD_LIBRARY_PATH=/opt/intel/oneapi/mpi/2021.3.0//lib/release:/opt/intel/oneapi/mpi/2021.3.0//lib:/opt/intel/oneapi/mkl/2021.3.0/lib/intel64:/opt/intel/oneapi/debugger/10.1.2/gdb/intel64/lib:/opt/intel/oneapi/debugger/10.1.2/libipt/intel64/lib:/opt/intel/oneapi/debugger/10.1.2/dep/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/x64:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/emu:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/compiler/lib/intel64_lin:/usr/lib:
+++ export LD_LIBRARY_PATH
+++ '[' -z '' ']'
+++ '[' -z /opt/intel/oneapi/mkl/2021.3.0/lib/intel64:/opt/intel/oneapi/compiler/2021.3.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2021.3.0/linux/lib ']'
+++ LIBRARY_PATH=/opt/intel/oneapi/mpi/2021.3.0//lib/release:/opt/intel/oneapi/mpi/2021.3.0//lib:/opt/intel/oneapi/mkl/2021.3.0/lib/intel64:/opt/intel/oneapi/compiler/2021.3.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2021.3.0/linux/lib
+++ export LIBRARY_PATH
+++ '[' -z /opt/intel/oneapi/mkl/2021.3.0/include:/opt/intel/oneapi/dpl/2021.4.0/linux/include:/opt/intel/oneapi/dev-utilities/2021.3.0/include:/opt/intel/oneapi/compiler/2021.3.0/linux/include ']'
+++ CPATH=/opt/intel/oneapi/mpi/2021.3.0//include:/opt/intel/oneapi/mkl/2021.3.0/include:/opt/intel/oneapi/dpl/2021.4.0/linux/include:/opt/intel/oneapi/dev-utilities/2021.3.0/include:/opt/intel/oneapi/compiler/2021.3.0/linux/include
+++ export CPATH
+++ export MANPATH=/opt/intel/oneapi/mpi/2021.3.0/man:/opt/intel/oneapi/debugger/10.1.2/documentation/man:/opt/intel/oneapi/compiler/2021.3.0/documentation/en/man/common::
+++ MANPATH=/opt/intel/oneapi/mpi/2021.3.0/man:/opt/intel/oneapi/debugger/10.1.2/documentation/man:/opt/intel/oneapi/compiler/2021.3.0/documentation/en/man/common::
+++ '[' -z '' ']'
+++ i_mpi_ofi_library_internal=1
+++ i_mpi_library_kind=
+++ args='SETVARS_CALL=1  '
+++ for arg in $args
+++ case "$arg" in
+++ case "$i_mpi_library_kind" in
+++ case "$i_mpi_ofi_library_internal" in
+++ PATH=/opt/intel/oneapi/mpi/2021.3.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.3.0//bin:/opt/intel/oneapi/mkl/2021.3.0/bin/intel64:/opt/intel/oneapi/dev-utilities/2021.3.0/bin:/opt/intel/oneapi/debugger/10.1.2/gdb/intel64/bin:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/llvm/aocl-bin:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2021.3.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2021.3.0/linux/bin:/home/jenkins/util/fefloa/bin:/home/jenkins/util/valgrind/valgrind-3.17.0/install/bin:/home/jenkins/util/ccache/ccache-4.4/install/bin:/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
+++ export PATH
+++ LD_LIBRARY_PATH=/opt/intel/oneapi/mpi/2021.3.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.3.0//lib/release:/opt/intel/oneapi/mpi/2021.3.0//lib:/opt/intel/oneapi/mkl/2021.3.0/lib/intel64:/opt/intel/oneapi/debugger/10.1.2/gdb/intel64/lib:/opt/intel/oneapi/debugger/10.1.2/libipt/intel64/lib:/opt/intel/oneapi/debugger/10.1.2/dep/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/x64:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/emu:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/compiler/lib/intel64_lin:/usr/lib:
+++ export LD_LIBRARY_PATH
+++ '[' -z /opt/intel/oneapi/mpi/2021.3.0//lib/release:/opt/intel/oneapi/mpi/2021.3.0//lib:/opt/intel/oneapi/mkl/2021.3.0/lib/intel64:/opt/intel/oneapi/compiler/2021.3.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2021.3.0/linux/lib ']'
+++ LIBRARY_PATH=/opt/intel/oneapi/mpi/2021.3.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.3.0//lib/release:/opt/intel/oneapi/mpi/2021.3.0//lib:/opt/intel/oneapi/mkl/2021.3.0/lib/intel64:/opt/intel/oneapi/compiler/2021.3.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2021.3.0/linux/lib
+++ export LIBRARY_PATH
+++ FI_PROVIDER_PATH=/opt/intel/oneapi/mpi/2021.3.0//libfabric/lib/prov:/usr/lib64/libfabric
+++ export FI_PROVIDER_PATH
++ temp_var=6
++ for arg in "$@"
+++ expr tbb=latest : '\(.*\)=.*'
++ arg_base=tbb
+++ expr tbb=latest : '.*=\(.*\)'
++ arg_verz=latest
++ arg_path=/opt/intel/oneapi/tbb/latest/env/vars.sh
++ SETVARS_VARS_PATH=/opt/intel/oneapi/tbb/latest/env/vars.sh
++ export SETVARS_VARS_PATH
++ '[' exclude = latest ']'
++ '[' -r /opt/intel/oneapi/tbb/latest/env/vars.sh ']'
++ echo ':: tbb -- latest'
:: tbb -- latest
++ . /opt/intel/oneapi/tbb/latest/env/vars.sh 'SETVARS_CALL=1 ' ''
+++ _vars_this_script_name=vars.sh
++++ _vars_get_proc_name /tmp/jenkins9854201297279893165.sh
++++ '[' -n '' ']'
++++ script=/tmp/jenkins9854201297279893165.sh
++++ '[' -L /tmp/jenkins9854201297279893165.sh ']'
++++ basename -- /tmp/jenkins9854201297279893165.sh
+++ '[' vars.sh = jenkins9854201297279893165.sh ']'
+++ vars_script_name=
++++ ps -p 1338345 -o comm=
+++ vars_script_shell=bash
+++ '[' -n '' ']'
+++ '[' -n '' ']'
+++ '[' -n '5.0.17(1)-release' ']'
+++ return 0
+++ vars_script_name=/opt/intel/oneapi/tbb/latest/env/vars.sh
+++ '[' '' = /opt/intel/oneapi/tbb/latest/env/vars.sh ']'
++++ get_script_path /opt/intel/oneapi/tbb/latest/env/vars.sh
++++ script_path=/opt/intel/oneapi/tbb/latest/env/vars.sh
++++ '[' -L /opt/intel/oneapi/tbb/latest/env/vars.sh ']'
+++++ command dirname -- /opt/intel/oneapi/tbb/latest/env/vars.sh
+++++ dirname -- /opt/intel/oneapi/tbb/latest/env/vars.sh
++++ script_dir=/opt/intel/oneapi/tbb/latest/env
+++++ cd /opt/intel/oneapi/tbb/latest/env
+++++ command pwd -P
+++++ pwd -P
++++ script_dir=/opt/intel/oneapi/tbb/2021.3.0/env
++++ printf %s /opt/intel/oneapi/tbb/2021.3.0/env
+++ TBBROOT=/opt/intel/oneapi/tbb/2021.3.0/env/..
+++ TBB_TARGET_ARCH=intel64
+++ '[' -n '' ']'
+++ for arg in "$@"
+++ case "$arg" in
+++ for arg in "$@"
+++ case "$arg" in
+++ TBB_LIB_NAME=libtbb.so.12
+++ TBB_LIB_DIR=intel64/gcc4.8
+++ '[' -e /opt/intel/oneapi/tbb/2021.3.0/env/../lib/intel64/gcc4.8/libtbb.so.12 ']'
+++ export TBBROOT
++++ prepend_path /opt/intel/oneapi/tbb/2021.3.0/env/../lib/intel64/gcc4.8 /opt/intel/oneapi/mpi/2021.3.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.3.0//lib/release:/opt/intel/oneapi/mpi/2021.3.0//lib:/opt/intel/oneapi/mkl/2021.3.0/lib/intel64:/opt/intel/oneapi/compiler/2021.3.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2021.3.0/linux/lib
++++ path_to_add=/opt/intel/oneapi/tbb/2021.3.0/env/../lib/intel64/gcc4.8
++++ path_is_now=/opt/intel/oneapi/mpi/2021.3.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.3.0//lib/release:/opt/intel/oneapi/mpi/2021.3.0//lib:/opt/intel/oneapi/mkl/2021.3.0/lib/intel64:/opt/intel/oneapi/compiler/2021.3.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2021.3.0/linux/lib
++++ '[' '' = /opt/intel/oneapi/mpi/2021.3.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.3.0//lib/release:/opt/intel/oneapi/mpi/2021.3.0//lib:/opt/intel/oneapi/mkl/2021.3.0/lib/intel64:/opt/intel/oneapi/compiler/2021.3.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2021.3.0/linux/lib ']'
++++ printf %s /opt/intel/oneapi/tbb/2021.3.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.3.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.3.0//lib/release:/opt/intel/oneapi/mpi/2021.3.0//lib:/opt/intel/oneapi/mkl/2021.3.0/lib/intel64:/opt/intel/oneapi/compiler/2021.3.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2021.3.0/linux/lib
+++ LIBRARY_PATH=/opt/intel/oneapi/tbb/2021.3.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.3.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.3.0//lib/release:/opt/intel/oneapi/mpi/2021.3.0//lib:/opt/intel/oneapi/mkl/2021.3.0/lib/intel64:/opt/intel/oneapi/compiler/2021.3.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2021.3.0/linux/lib
+++ export LIBRARY_PATH
++++ prepend_path /opt/intel/oneapi/tbb/2021.3.0/env/../lib/intel64/gcc4.8 /opt/intel/oneapi/mpi/2021.3.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.3.0//lib/release:/opt/intel/oneapi/mpi/2021.3.0//lib:/opt/intel/oneapi/mkl/2021.3.0/lib/intel64:/opt/intel/oneapi/debugger/10.1.2/gdb/intel64/lib:/opt/intel/oneapi/debugger/10.1.2/libipt/intel64/lib:/opt/intel/oneapi/debugger/10.1.2/dep/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/x64:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/emu:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/compiler/lib/intel64_lin:/usr/lib:
++++ path_to_add=/opt/intel/oneapi/tbb/2021.3.0/env/../lib/intel64/gcc4.8
++++ path_is_now=/opt/intel/oneapi/mpi/2021.3.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.3.0//lib/release:/opt/intel/oneapi/mpi/2021.3.0//lib:/opt/intel/oneapi/mkl/2021.3.0/lib/intel64:/opt/intel/oneapi/debugger/10.1.2/gdb/intel64/lib:/opt/intel/oneapi/debugger/10.1.2/libipt/intel64/lib:/opt/intel/oneapi/debugger/10.1.2/dep/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/x64:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/emu:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/compiler/lib/intel64_lin:/usr/lib:
++++ '[' '' = /opt/intel/oneapi/mpi/2021.3.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.3.0//lib/release:/opt/intel/oneapi/mpi/2021.3.0//lib:/opt/intel/oneapi/mkl/2021.3.0/lib/intel64:/opt/intel/oneapi/debugger/10.1.2/gdb/intel64/lib:/opt/intel/oneapi/debugger/10.1.2/libipt/intel64/lib:/opt/intel/oneapi/debugger/10.1.2/dep/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/x64:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/emu:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/compiler/lib/intel64_lin:/usr/lib: ']'
++++ printf %s /opt/intel/oneapi/tbb/2021.3.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.3.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.3.0//lib/release:/opt/intel/oneapi/mpi/2021.3.0//lib:/opt/intel/oneapi/mkl/2021.3.0/lib/intel64:/opt/intel/oneapi/debugger/10.1.2/gdb/intel64/lib:/opt/intel/oneapi/debugger/10.1.2/libipt/intel64/lib:/opt/intel/oneapi/debugger/10.1.2/dep/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/x64:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/emu:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/compiler/lib/intel64_lin:/usr/lib:
+++ LD_LIBRARY_PATH=/opt/intel/oneapi/tbb/2021.3.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.3.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.3.0//lib/release:/opt/intel/oneapi/mpi/2021.3.0//lib:/opt/intel/oneapi/mkl/2021.3.0/lib/intel64:/opt/intel/oneapi/debugger/10.1.2/gdb/intel64/lib:/opt/intel/oneapi/debugger/10.1.2/libipt/intel64/lib:/opt/intel/oneapi/debugger/10.1.2/dep/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/x64:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/emu:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/lib/oclfpga/linux64/lib:/opt/intel/oneapi/compiler/2021.3.0/linux/compiler/lib/intel64_lin:/usr/lib:
+++ export LD_LIBRARY_PATH
++++ prepend_path /opt/intel/oneapi/tbb/2021.3.0/env/../include /opt/intel/oneapi/mpi/2021.3.0//include:/opt/intel/oneapi/mkl/2021.3.0/include:/opt/intel/oneapi/dpl/2021.4.0/linux/include:/opt/intel/oneapi/dev-utilities/2021.3.0/include:/opt/intel/oneapi/compiler/2021.3.0/linux/include
++++ path_to_add=/opt/intel/oneapi/tbb/2021.3.0/env/../include
++++ path_is_now=/opt/intel/oneapi/mpi/2021.3.0//include:/opt/intel/oneapi/mkl/2021.3.0/include:/opt/intel/oneapi/dpl/2021.4.0/linux/include:/opt/intel/oneapi/dev-utilities/2021.3.0/include:/opt/intel/oneapi/compiler/2021.3.0/linux/include
++++ '[' '' = /opt/intel/oneapi/mpi/2021.3.0//include:/opt/intel/oneapi/mkl/2021.3.0/include:/opt/intel/oneapi/dpl/2021.4.0/linux/include:/opt/intel/oneapi/dev-utilities/2021.3.0/include:/opt/intel/oneapi/compiler/2021.3.0/linux/include ']'
++++ printf %s /opt/intel/oneapi/tbb/2021.3.0/env/../include:/opt/intel/oneapi/mpi/2021.3.0//include:/opt/intel/oneapi/mkl/2021.3.0/include:/opt/intel/oneapi/dpl/2021.4.0/linux/include:/opt/intel/oneapi/dev-utilities/2021.3.0/include:/opt/intel/oneapi/compiler/2021.3.0/linux/include
+++ CPATH=/opt/intel/oneapi/tbb/2021.3.0/env/../include:/opt/intel/oneapi/mpi/2021.3.0//include:/opt/intel/oneapi/mkl/2021.3.0/include:/opt/intel/oneapi/dpl/2021.4.0/linux/include:/opt/intel/oneapi/dev-utilities/2021.3.0/include:/opt/intel/oneapi/compiler/2021.3.0/linux/include
+++ export CPATH
++++ prepend_path /opt/intel/oneapi/tbb/2021.3.0/env/.. ''
++++ path_to_add=/opt/intel/oneapi/tbb/2021.3.0/env/..
++++ path_is_now=
++++ '[' '' = '' ']'
++++ printf %s /opt/intel/oneapi/tbb/2021.3.0/env/..
+++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/tbb/2021.3.0/env/..
+++ export CMAKE_PREFIX_PATH
++ temp_var=7
++ '[' 7 -eq 0 ']'
++ echo ':: oneAPI environment initialized ::'
:: oneAPI environment initialized ::
++ echo ' '
 
++ '[' 0 -ne 0 ']'
++ eval set -- ' '
+++ set --
++ prep_for_exit 0
++ script_return_code=0
++ unset -v SETVARS_CALL
++ unset -v SETVARS_ARGS
++ '[' 0 = '' ']'
++ '[' 0 -eq 0 ']'
++ SETVARS_COMPLETED=1
++ export SETVARS_COMPLETED
++ return 0
++ return
+ make avro_lib
cmake debug_gnu9
-- Build type = debug
-- The C compiler identification is GNU 9.4.0
-- The CXX compiler identification is GNU 9.4.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc-9 - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++-9 - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- lapack not found
-- compiling built-in glfw3
-- Setting gnu compiler flags
-- CPU thread manager = c++11.
-- GPU threading not enabled. GPU thread manager = serial.
-- Please install kcachegrind for graphical profiling.
-- Please install massif-visualizer for graphical heap memory usage.
-- pybind11 v2.10.0 dev1
-- Using X11 for window creation
-- Configuring done
-- Generating done
-- Build files have been written to: /home/jenkins/util/avro/build/debug_gnu9
make -C debug_gnu9 --no-print-directory avro_lib
Consolidate compiler generated dependencies of target avro_src
[  0%] Building CXX object src/CMakeFiles/avro_src.dir/include/avro.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/include/avro_params.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/adapt.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/cavity.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/collapses.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/filter.cpp.o
/home/jenkins/util/avro/src/lib/adaptation/filter.cpp: In member function ‘void avro::Filter::generateCandidates(avro::Topology<avro::Simplex>&, avro::MetricField<avro::Simplex>&, avro::real_t, avro::Insert<avro::Simplex>&)’:
/home/jenkins/util/avro/src/lib/adaptation/filter.cpp:139:11: warning: variable ‘TIME0’ set but not used [-Wunused-but-set-variable]
  139 |   clock_t TIME0, TIME1;
      |           ^~~~~
/home/jenkins/util/avro/src/lib/adaptation/filter.cpp:139:18: warning: variable ‘TIME1’ set but not used [-Wunused-but-set-variable]
  139 |   clock_t TIME0, TIME1;
      |                  ^~~~~
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/geometry.cpp.o
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/implied_metric.cpp.o
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp: In instantiation of ‘void avro::ElementImpliedMetric<type>::compute(const std::vector<const double*>&) [with type = avro::Simplex]’:
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:638:16:   required from here
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:96:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
   96 |   J_ = J0_*Jeq_;
      |   ~~~^~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:99:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
   99 |   M_ = numerics::inverse( JJt );
      |   ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp: In instantiation of ‘void avro::ElementImpliedMetric<type>::compute(const avro::Points&, const index_t*, avro::index_t) [with type = avro::Simplex; avro::index_t = long unsigned int]’:
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:638:16:   required from here
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:110:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
  110 |   J_ = J0_*Jeq_;
      |   ~~~^~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:113:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
  113 |   M_ = numerics::inverse( JJt );
      |   ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp: In instantiation of ‘void avro::ElementImpliedMetric<type>::inverse(const avro::Points&, const index_t*, avro::index_t) [with type = avro::Simplex; avro::index_t = long unsigned int]’:
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:638:16:   required from here
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:125:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
  125 |   J_ = J0_*Jeq_;
      |   ~~~^~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:126:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
  126 |   M_ = J_*numerics::transpose(J_); // no inverse
      |   ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/insertions.cpp.o
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/metric.cpp.o
/home/jenkins/util/avro/src/lib/adaptation/metric.cpp: In instantiation of ‘avro::real_t avro::MetricField<type>::length(avro::index_t, avro::index_t) const [with type = avro::Simplex; avro::real_t = double; avro::index_t = long unsigned int]’:
/home/jenkins/util/avro/src/lib/adaptation/metric.cpp:708:16:   required from here
/home/jenkins/util/avro/src/lib/adaptation/metric.cpp:146:10: warning: variable ‘dim’ set but not used [-Wunused-but-set-variable]
  146 |  coord_t dim = topology_.points().dim();
      |          ^~~
[  7%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/parallel.cpp.o
[  7%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/primitive.cpp.o
[  7%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/properties.cpp.o
[  7%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/smoothing.cpp.o
[  7%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/swaps.cpp.o
[ 10%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/crypto.cpp.o
[ 10%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/error.cpp.o
[ 10%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/kdtree.cpp.o
[ 10%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/nearest_neighbours.cpp.o
[ 12%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_cpu.cpp.o
[ 12%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_gpu.cpp.o
[ 12%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_mpi.cpp.o
[ 12%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/tools.cpp.o
[ 12%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/basis.cpp.o
[ 15%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_line.cpp.o
[ 15%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_pentatope.cpp.o
[ 15%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_tetrahedron.cpp.o
[ 15%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_triangle.cpp.o
[ 17%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/element.cpp.o
[ 17%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_line.cpp.o
[ 17%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_nodes.cpp.o
[ 17%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_pentatope.cpp.o
[ 17%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_tetrahedron.cpp.o
[ 20%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_triangle.cpp.o
[ 20%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_line.cpp.o
/home/jenkins/util/avro/src/lib/element/legendre_line.cpp: In static member function ‘static void avro::Legendre<avro::Simplex, N, P>::eval(const double*, double*) [with int N = 1; int P = 0]’:
/home/jenkins/util/avro/src/lib/element/legendre_line.cpp:24:10: warning: unused variable ‘s’ [-Wunused-variable]
   24 |   real_t s = x[0];
      |          ^
[ 20%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_pentatope.cpp.o
[ 20%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_tetrahedron.cpp.o
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[ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/polytope.cpp.o
[ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/quadrature.cpp.o
/home/jenkins/util/avro/src/lib/element/quadrature.cpp: In instantiation of ‘void avro::QuadratureStore<type>::build() [with type = avro::Simplex]’:
/home/jenkins/util/avro/src/lib/element/quadrature.cpp:38:3:   required from ‘avro::QuadratureStore<type>::QuadratureStore(avro::BasisFunctionCategory) [with type = avro::Simplex]’
/home/jenkins/util/avro/src/lib/element/quadrature.cpp:26:83:   required from here
/home/jenkins/util/avro/src/lib/element/quadrature.cpp:93:16: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
   93 |           B[d] = matd<real_t>( nb_basis , quad.nb() );
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/quadrature.cpp:14:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/element/quadrature.cpp:114:16: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
  114 |           B[d] = Ainv*B[d]; // convert modal basis to nodal basis
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/quadrature.cpp:14:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
[ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/reference.cpp.o
[ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/simplex.cpp.o
/home/jenkins/util/avro/src/lib/element/simplex.cpp: In member function ‘void avro::Simplex::precalculate()’:
/home/jenkins/util/avro/src/lib/element/simplex.cpp:120:25: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  120 |   for (index_t k = 0; k < number_+1; k++)
      |                       ~~^~~~~~~~~~~
[ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/trace2cell.cpp.o
[ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/body.cpp.o
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[ 28%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/model.cpp.o
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/home/jenkins/util/avro/src/lib/graphics/raytracer.cpp: In member function ‘void avro::graphics::Canvas::convert()’:
/home/jenkins/util/avro/src/lib/graphics/raytracer.cpp:97:25: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   97 |   for (index_t i = 0; i < height_; i++)
      |                       ~~^~~~~~~~~
/home/jenkins/util/avro/src/lib/graphics/raytracer.cpp:98:25: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   98 |   for (index_t j = 0; j < width_; j++)
      |                       ~~^~~~~~~~
/home/jenkins/util/avro/src/lib/graphics/raytracer.cpp: In member function ‘void avro::graphics::RayTracer::render()’:
/home/jenkins/util/avro/src/lib/graphics/raytracer.cpp:435:27: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  435 |     for (index_t j = 0; j < canvas_.width(); j++) {
      |                         ~~^~~~~~~~~~~~~~~~~
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/home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp: In member function ‘void avro::graphics::PolytopeDecomposition::triangulate()’:
/home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp:136:11: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  136 |           for (index_t j = 0; j < coordinates_.size()/3; j++)
      |           ^~~
/home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp:139:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  139 |             for (index_t j = 0; j < output.numberofpoints; j++)
      |             ^~~
/home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp:139:35: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  139 |             for (index_t j = 0; j < output.numberofpoints; j++)
      |                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
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[ 74%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/diagram.cpp.o
/home/jenkins/util/avro/src/lib/voronoi/diagram.cpp: In member function ‘void avro::voronoi::PowerDiagram::add_cell(const avro::voronoi::Cell&, bool)’:
/home/jenkins/util/avro/src/lib/voronoi/diagram.cpp:189:7: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  189 |       for (index_t i = 0; i < polytope.size(); i++)
      |       ^~~
/home/jenkins/util/avro/src/lib/voronoi/diagram.cpp:191:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  191 |         add( polytope.data() , polytope.size() );
      |         ^~~
[ 74%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/facets.cpp.o
[ 74%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/optimal_transport.cpp.o
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[ 76%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/vertex.cpp.o
[ 76%] Building CXX object src/CMakeFiles/avro_src.dir/bin/adapt.cpp.o
[ 76%] Building CXX object src/CMakeFiles/avro_src.dir/bin/animate.cpp.o
/home/jenkins/util/avro/src/bin/animate.cpp: In function ‘int avro::programs::animate(int, const char**)’:
/home/jenkins/util/avro/src/bin/animate.cpp:140:8: warning: variable ‘found’ set but not used [-Wunused-but-set-variable]
  140 |   bool found = false;
      |        ^~~~~
[ 79%] Building CXX object src/CMakeFiles/avro_src.dir/bin/arguments.cpp.o
[ 79%] Building CXX object src/CMakeFiles/avro_src.dir/bin/check.cpp.o
/home/jenkins/util/avro/src/bin/check.cpp: In function ‘int avro::programs::check(int, const char**)’:
/home/jenkins/util/avro/src/bin/check.cpp:66:19: warning: unused variable ‘topology’ [-Wunused-variable]
   66 |   Topology<type>& topology = *static_cast<Topology<type>*>(ptopology.get());
      |                   ^~~~~~~~
[ 79%] Building CXX object src/CMakeFiles/avro_src.dir/bin/conformity.cpp.o
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[ 82%] Built target avro_src
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[ 82%] Building C object src/third_party/CMakeFiles/avro_third_party.dir/libmeshb/libmeshb7.c.o
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[ 94%] Building C object src/third_party/glfw/src/CMakeFiles/glfw.dir/xkb_unicode.c.o
[ 97%] Building C object src/third_party/glfw/src/CMakeFiles/glfw.dir/posix_time.c.o
[ 97%] Building C object src/third_party/glfw/src/CMakeFiles/glfw.dir/posix_thread.c.o
[ 97%] Building C object src/third_party/glfw/src/CMakeFiles/glfw.dir/glx_context.c.o
[ 97%] Building C object src/third_party/glfw/src/CMakeFiles/glfw.dir/egl_context.c.o
[100%] Building C object src/third_party/glfw/src/CMakeFiles/glfw.dir/osmesa_context.c.o
[100%] Building C object src/third_party/glfw/src/CMakeFiles/glfw.dir/linux_joystick.c.o
[100%] Linking C static library ../../../../lib/libglfw3.a
[100%] Built target glfw
[100%] Linking CXX static library ../lib/libavro.a
[100%] Built target avro_static
[100%] Linking CXX shared library ../lib/libavro.so
[100%] Built target avro_shared
[100%] Built target avro_lib
cmake debug_gnu10
-- Build type = debug
-- The C compiler identification is GNU 10.3.0
-- The CXX compiler identification is GNU 10.3.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc-10 - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++-10 - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- lapack not found
-- compiling built-in glfw3
-- Setting gnu compiler flags
-- CPU thread manager = c++11.
-- GPU threading not enabled. GPU thread manager = serial.
-- Please install kcachegrind for graphical profiling.
-- Please install massif-visualizer for graphical heap memory usage.
-- pybind11 v2.10.0 dev1
-- Using X11 for window creation
-- Configuring done
-- Generating done
-- Build files have been written to: /home/jenkins/util/avro/build/debug_gnu10
make -C debug_gnu10 --no-print-directory avro_lib
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[  0%] Building CXX object src/CMakeFiles/avro_src.dir/include/avro.cpp.o
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[  2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/filter.cpp.o
/home/jenkins/util/avro/src/lib/adaptation/filter.cpp: In member function ‘void avro::Filter::generateCandidates(avro::Topology<avro::Simplex>&, avro::MetricField<avro::Simplex>&, avro::real_t, avro::Insert<avro::Simplex>&)’:
/home/jenkins/util/avro/src/lib/adaptation/filter.cpp:139:11: warning: variable ‘TIME0’ set but not used [-Wunused-but-set-variable]
  139 |   clock_t TIME0, TIME1;
      |           ^~~~~
/home/jenkins/util/avro/src/lib/adaptation/filter.cpp:139:18: warning: variable ‘TIME1’ set but not used [-Wunused-but-set-variable]
  139 |   clock_t TIME0, TIME1;
      |                  ^~~~~
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/geometry.cpp.o
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/implied_metric.cpp.o
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp: In instantiation of ‘void avro::ElementImpliedMetric<type>::compute(const std::vector<const double*>&) [with type = avro::Simplex]’:
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:638:16:   required from here
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:96:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
   96 |   J_ = J0_*Jeq_;
      |   ~~~^~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:99:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
   99 |   M_ = numerics::inverse( JJt );
      |   ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp: In instantiation of ‘void avro::ElementImpliedMetric<type>::compute(const avro::Points&, const index_t*, avro::index_t) [with type = avro::Simplex; avro::index_t = long unsigned int]’:
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:638:16:   required from here
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:110:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
  110 |   J_ = J0_*Jeq_;
      |   ~~~^~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:113:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
  113 |   M_ = numerics::inverse( JJt );
      |   ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp: In instantiation of ‘void avro::ElementImpliedMetric<type>::inverse(const avro::Points&, const index_t*, avro::index_t) [with type = avro::Simplex; avro::index_t = long unsigned int]’:
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:638:16:   required from here
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:125:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
  125 |   J_ = J0_*Jeq_;
      |   ~~~^~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:126:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
  126 |   M_ = J_*numerics::transpose(J_); // no inverse
      |   ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/insertions.cpp.o
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/metric.cpp.o
/home/jenkins/util/avro/src/lib/adaptation/metric.cpp: In instantiation of ‘avro::real_t avro::MetricField<type>::length(avro::index_t, avro::index_t) const [with type = avro::Simplex; avro::real_t = double; avro::index_t = long unsigned int]’:
/home/jenkins/util/avro/src/lib/adaptation/metric.cpp:708:16:   required from here
/home/jenkins/util/avro/src/lib/adaptation/metric.cpp:146:10: warning: variable ‘dim’ set but not used [-Wunused-but-set-variable]
  146 |  coord_t dim = topology_.points().dim();
      |          ^~~
[  7%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/parallel.cpp.o
[  7%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/primitive.cpp.o
[  7%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/properties.cpp.o
[  7%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/smoothing.cpp.o
[  7%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/swaps.cpp.o
[ 10%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/crypto.cpp.o
[ 10%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/error.cpp.o
[ 10%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/kdtree.cpp.o
[ 10%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/nearest_neighbours.cpp.o
[ 12%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_cpu.cpp.o
[ 12%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_gpu.cpp.o
[ 12%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_mpi.cpp.o
[ 12%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/tools.cpp.o
[ 12%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/basis.cpp.o
[ 15%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_line.cpp.o
[ 15%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_pentatope.cpp.o
[ 15%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_tetrahedron.cpp.o
[ 15%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_triangle.cpp.o
[ 17%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/element.cpp.o
[ 17%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_line.cpp.o
[ 17%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_nodes.cpp.o
[ 17%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_pentatope.cpp.o
[ 17%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_tetrahedron.cpp.o
[ 20%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_triangle.cpp.o
[ 20%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_line.cpp.o
/home/jenkins/util/avro/src/lib/element/legendre_line.cpp: In static member function ‘static void avro::Legendre<avro::Simplex, N, P>::eval(const double*, double*) [with int N = 1; int P = 0]’:
/home/jenkins/util/avro/src/lib/element/legendre_line.cpp:24:10: warning: unused variable ‘s’ [-Wunused-variable]
   24 |   real_t s = x[0];
      |          ^
[ 20%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_pentatope.cpp.o
[ 20%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_tetrahedron.cpp.o
[ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_triangle.cpp.o
[ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/polytope.cpp.o
[ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/quadrature.cpp.o
/home/jenkins/util/avro/src/lib/element/quadrature.cpp: In instantiation of ‘void avro::QuadratureStore<type>::build() [with type = avro::Simplex]’:
/home/jenkins/util/avro/src/lib/element/quadrature.cpp:38:3:   required from ‘avro::QuadratureStore<type>::QuadratureStore(avro::BasisFunctionCategory) [with type = avro::Simplex]’
/home/jenkins/util/avro/src/lib/element/quadrature.cpp:26:83:   required from here
/home/jenkins/util/avro/src/lib/element/quadrature.cpp:93:16: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
   93 |           B[d] = matd<real_t>( nb_basis , quad.nb() );
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/quadrature.cpp:14:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/element/quadrature.cpp:114:16: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
  114 |           B[d] = Ainv*B[d]; // convert modal basis to nodal basis
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/quadrature.cpp:14:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
[ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/reference.cpp.o
[ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/simplex.cpp.o
/home/jenkins/util/avro/src/lib/element/simplex.cpp: In member function ‘void avro::Simplex::precalculate()’:
/home/jenkins/util/avro/src/lib/element/simplex.cpp:120:25: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  120 |   for (index_t k = 0; k < number_+1; k++)
      |                       ~~^~~~~~~~~~~
[ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/trace2cell.cpp.o
[ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/body.cpp.o
[ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/entity.cpp.o
[ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/model.cpp.o
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[ 28%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/body.cpp.o
[ 28%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/data.cpp.o
[ 28%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/model.cpp.o
[ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/object.cpp.o
[ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/psc/facet.cpp.o
[ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/psc/node.cpp.o
[ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/psc/object.cpp.o
[ 33%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/application.cpp.o
[ 33%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/bsp.cpp.o
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[ 35%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/gui.cpp.o
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[ 35%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/opengl.cpp.o
[ 35%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/plot.cpp.o
[ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/postscript.cpp.o
[ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/primitives.cpp.o
[ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/raytracer.cpp.o
/home/jenkins/util/avro/src/lib/graphics/raytracer.cpp: In member function ‘void avro::graphics::Canvas::convert()’:
/home/jenkins/util/avro/src/lib/graphics/raytracer.cpp:97:25: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   97 |   for (index_t i = 0; i < height_; i++)
      |                       ~~^~~~~~~~~
/home/jenkins/util/avro/src/lib/graphics/raytracer.cpp:98:25: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   98 |   for (index_t j = 0; j < width_; j++)
      |                       ~~^~~~~~~~
/home/jenkins/util/avro/src/lib/graphics/raytracer.cpp: In member function ‘void avro::graphics::RayTracer::render()’:
/home/jenkins/util/avro/src/lib/graphics/raytracer.cpp:435:27: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  435 |     for (index_t j = 0; j < canvas_.width(); j++) {
      |                         ~~^~~~~~~~~~~~~~~~~
[ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/shader.cpp.o
[ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/vao.cpp.o
[ 41%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/vao_polytope.cpp.o
/home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp: In member function ‘void avro::graphics::PolytopeDecomposition::triangulate()’:
/home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp:136:11: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  136 |           for (index_t j = 0; j < coordinates_.size()/3; j++)
      |           ^~~
/home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp:139:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  139 |             for (index_t j = 0; j < output.numberofpoints; j++)
      |             ^~~
/home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp:139:35: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  139 |             for (index_t j = 0; j < output.numberofpoints; j++)
      |                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
[ 41%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/webglpp.cpp.o
[ 41%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/websockets.cpp.o
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[ 46%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/field.cpp.o
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/home/jenkins/util/avro/src/lib/voronoi/diagram.cpp: In member function ‘void avro::voronoi::PowerDiagram::add_cell(const avro::voronoi::Cell&, bool)’:
/home/jenkins/util/avro/src/lib/voronoi/diagram.cpp:189:7: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  189 |       for (index_t i = 0; i < polytope.size(); i++)
      |       ^~~
/home/jenkins/util/avro/src/lib/voronoi/diagram.cpp:191:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  191 |         add( polytope.data() , polytope.size() );
      |         ^~~
[ 74%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/facets.cpp.o
[ 74%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/optimal_transport.cpp.o
[ 76%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/particles.cpp.o
[ 76%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/vertex.cpp.o
[ 76%] Building CXX object src/CMakeFiles/avro_src.dir/bin/adapt.cpp.o
[ 76%] Building CXX object src/CMakeFiles/avro_src.dir/bin/animate.cpp.o
/home/jenkins/util/avro/src/bin/animate.cpp: In function ‘int avro::programs::animate(int, const char**)’:
/home/jenkins/util/avro/src/bin/animate.cpp:140:8: warning: variable ‘found’ set but not used [-Wunused-but-set-variable]
  140 |   bool found = false;
      |        ^~~~~
[ 79%] Building CXX object src/CMakeFiles/avro_src.dir/bin/arguments.cpp.o
[ 79%] Building CXX object src/CMakeFiles/avro_src.dir/bin/check.cpp.o
/home/jenkins/util/avro/src/bin/check.cpp: In function ‘int avro::programs::check(int, const char**)’:
/home/jenkins/util/avro/src/bin/check.cpp:66:19: warning: unused variable ‘topology’ [-Wunused-variable]
   66 |   Topology<type>& topology = *static_cast<Topology<type>*>(ptopology.get());
      |                   ^~~~~~~~
[ 79%] Building CXX object src/CMakeFiles/avro_src.dir/bin/conformity.cpp.o
[ 79%] Building CXX object src/CMakeFiles/avro_src.dir/bin/conformityp.cpp.o
[ 79%] Building CXX object src/CMakeFiles/avro_src.dir/bin/convert.cpp.o
[ 82%] Building CXX object src/CMakeFiles/avro_src.dir/bin/image.cpp.o
[ 82%] Building CXX object src/CMakeFiles/avro_src.dir/bin/plot.cpp.o
[ 82%] Built target avro_src
Consolidate compiler generated dependencies of target avro_third_party
[ 82%] Building C object src/third_party/CMakeFiles/avro_third_party.dir/libmeshb/libmeshb7.c.o
[ 82%] Building CXX object src/third_party/CMakeFiles/avro_third_party.dir/imgui/imgui.cpp.o
[ 84%] Building CXX object src/third_party/CMakeFiles/avro_third_party.dir/imgui/imgui_demo.cpp.o
[ 84%] Building CXX object src/third_party/CMakeFiles/avro_third_party.dir/imgui/imgui_draw.cpp.o
[ 84%] Building CXX object src/third_party/CMakeFiles/avro_third_party.dir/imgui/imgui_widgets.cpp.o
[ 84%] Building CXX object src/third_party/CMakeFiles/avro_third_party.dir/geogram/kd_tree.cpp.o
[ 84%] Building CXX object src/third_party/CMakeFiles/avro_third_party.dir/geogram/nn_search.cpp.o
[ 89%] Built target avro_third_party
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[ 89%] Building C object src/third_party/glfw/src/CMakeFiles/glfw.dir/context.c.o
[ 92%] Building C object src/third_party/glfw/src/CMakeFiles/glfw.dir/init.c.o
[ 92%] Building C object src/third_party/glfw/src/CMakeFiles/glfw.dir/input.c.o
[ 92%] Building C object src/third_party/glfw/src/CMakeFiles/glfw.dir/monitor.c.o
[ 92%] Building C object src/third_party/glfw/src/CMakeFiles/glfw.dir/vulkan.c.o
[ 94%] Building C object src/third_party/glfw/src/CMakeFiles/glfw.dir/window.c.o
[ 94%] Building C object src/third_party/glfw/src/CMakeFiles/glfw.dir/x11_init.c.o
[ 94%] Building C object src/third_party/glfw/src/CMakeFiles/glfw.dir/x11_monitor.c.o
[ 94%] Building C object src/third_party/glfw/src/CMakeFiles/glfw.dir/x11_window.c.o
[ 94%] Building C object src/third_party/glfw/src/CMakeFiles/glfw.dir/xkb_unicode.c.o
[ 97%] Building C object src/third_party/glfw/src/CMakeFiles/glfw.dir/posix_time.c.o
[ 97%] Building C object src/third_party/glfw/src/CMakeFiles/glfw.dir/posix_thread.c.o
[ 97%] Building C object src/third_party/glfw/src/CMakeFiles/glfw.dir/glx_context.c.o
[ 97%] Building C object src/third_party/glfw/src/CMakeFiles/glfw.dir/egl_context.c.o
[100%] Building C object src/third_party/glfw/src/CMakeFiles/glfw.dir/osmesa_context.c.o
[100%] Building C object src/third_party/glfw/src/CMakeFiles/glfw.dir/linux_joystick.c.o
[100%] Linking C static library ../../../../lib/libglfw3.a
[100%] Built target glfw
[100%] Linking CXX static library ../lib/libavro.a
[100%] Built target avro_static
[100%] Linking CXX shared library ../lib/libavro.so
[100%] Built target avro_shared
[100%] Built target avro_lib
cmake debug_gnu11
-- Build type = debug
-- The C compiler identification is GNU 11.1.0
-- The CXX compiler identification is GNU 11.1.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc-11 - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++-11 - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- lapack not found
-- compiling built-in glfw3
-- Setting gnu compiler flags
-- CPU thread manager = c++11.
-- GPU threading not enabled. GPU thread manager = serial.
-- Please install kcachegrind for graphical profiling.
-- Please install massif-visualizer for graphical heap memory usage.
-- pybind11 v2.10.0 dev1
-- Using X11 for window creation
-- Configuring done
-- Generating done
-- Build files have been written to: /home/jenkins/util/avro/build/debug_gnu11
make -C debug_gnu11 --no-print-directory avro_lib
Consolidate compiler generated dependencies of target avro_src
[  0%] Building CXX object src/CMakeFiles/avro_src.dir/include/avro.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/include/avro_params.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/adapt.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/cavity.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/collapses.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/filter.cpp.o
/home/jenkins/util/avro/src/lib/adaptation/filter.cpp: In member function ‘void avro::Filter::generateCandidates(avro::Topology<avro::Simplex>&, avro::MetricField<avro::Simplex>&, avro::real_t, avro::Insert<avro::Simplex>&)’:
/home/jenkins/util/avro/src/lib/adaptation/filter.cpp:139:11: warning: variable ‘TIME0’ set but not used [-Wunused-but-set-variable]
  139 |   clock_t TIME0, TIME1;
      |           ^~~~~
/home/jenkins/util/avro/src/lib/adaptation/filter.cpp:139:18: warning: variable ‘TIME1’ set but not used [-Wunused-but-set-variable]
  139 |   clock_t TIME0, TIME1;
      |                  ^~~~~
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/geometry.cpp.o
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/implied_metric.cpp.o
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp: In instantiation of ‘void avro::ElementImpliedMetric<type>::compute(const std::vector<const double*>&) [with type = avro::Simplex]’:
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:638:16:   required from here
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:96:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
   96 |   J_ = J0_*Jeq_;
      |   ~~~^~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:99:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
   99 |   M_ = numerics::inverse( JJt );
      |   ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp: In instantiation of ‘void avro::ElementImpliedMetric<type>::compute(const avro::Points&, const index_t*, avro::index_t) [with type = avro::Simplex; avro::index_t = long unsigned int]’:
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:638:16:   required from here
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:110:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
  110 |   J_ = J0_*Jeq_;
      |   ~~~^~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:113:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
  113 |   M_ = numerics::inverse( JJt );
      |   ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp: In instantiation of ‘void avro::ElementImpliedMetric<type>::inverse(const avro::Points&, const index_t*, avro::index_t) [with type = avro::Simplex; avro::index_t = long unsigned int]’:
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:638:16:   required from here
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:125:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
  125 |   J_ = J0_*Jeq_;
      |   ~~~^~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:126:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
  126 |   M_ = J_*numerics::transpose(J_); // no inverse
      |   ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/insertions.cpp.o
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/metric.cpp.o
/home/jenkins/util/avro/src/lib/adaptation/metric.cpp: In instantiation of ‘avro::real_t avro::MetricField<type>::length(avro::index_t, avro::index_t) const [with type = avro::Simplex; avro::real_t = double; avro::index_t = long unsigned int]’:
/home/jenkins/util/avro/src/lib/adaptation/metric.cpp:708:16:   required from here
/home/jenkins/util/avro/src/lib/adaptation/metric.cpp:146:17: warning: variable ‘dim’ set but not used [-Wunused-but-set-variable]
  146 |         coord_t dim = topology_.points().dim();
      |                 ^~~
[  7%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/parallel.cpp.o
[  7%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/primitive.cpp.o
[  7%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/properties.cpp.o
[  7%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/smoothing.cpp.o
[  7%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/swaps.cpp.o
[ 10%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/crypto.cpp.o
[ 10%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/error.cpp.o
[ 10%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/kdtree.cpp.o
[ 10%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/nearest_neighbours.cpp.o
[ 12%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_cpu.cpp.o
[ 12%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_gpu.cpp.o
[ 12%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_mpi.cpp.o
[ 12%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/tools.cpp.o
[ 12%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/basis.cpp.o
[ 15%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_line.cpp.o
[ 15%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_pentatope.cpp.o
[ 15%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_tetrahedron.cpp.o
[ 15%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_triangle.cpp.o
[ 17%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/element.cpp.o
[ 17%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_line.cpp.o
[ 17%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_nodes.cpp.o
[ 17%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_pentatope.cpp.o
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[ 20%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_line.cpp.o
/home/jenkins/util/avro/src/lib/element/legendre_line.cpp: In static member function ‘static void avro::Legendre<avro::Simplex, N, P>::eval(const double*, double*) [with int N = 1; int P = 0]’:
/home/jenkins/util/avro/src/lib/element/legendre_line.cpp:24:10: warning: unused variable ‘s’ [-Wunused-variable]
   24 |   real_t s = x[0];
      |          ^
[ 20%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_pentatope.cpp.o
[ 20%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_tetrahedron.cpp.o
[ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_triangle.cpp.o
[ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/polytope.cpp.o
[ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/quadrature.cpp.o
/home/jenkins/util/avro/src/lib/element/quadrature.cpp: In instantiation of ‘void avro::QuadratureStore<type>::build() [with type = avro::Simplex]’:
/home/jenkins/util/avro/src/lib/element/quadrature.cpp:38:3:   required from ‘avro::QuadratureStore<type>::QuadratureStore(avro::BasisFunctionCategory) [with type = avro::Simplex]’
/home/jenkins/util/avro/src/lib/element/quadrature.cpp:26:83:   required from here
/home/jenkins/util/avro/src/lib/element/quadrature.cpp:93:16: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
   93 |           B[d] = matd<real_t>( nb_basis , quad.nb() );
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/quadrature.cpp:14:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/element/quadrature.cpp:114:16: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
  114 |           B[d] = Ainv*B[d]; // convert modal basis to nodal basis
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/quadrature.cpp:14:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
[ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/reference.cpp.o
[ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/simplex.cpp.o
/home/jenkins/util/avro/src/lib/element/simplex.cpp: In member function ‘void avro::Simplex::precalculate()’:
/home/jenkins/util/avro/src/lib/element/simplex.cpp:120:25: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  120 |   for (index_t k = 0; k < number_+1; k++)
      |                       ~~^~~~~~~~~~~
[ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/trace2cell.cpp.o
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/home/jenkins/util/avro/src/lib/graphics/raytracer.cpp: In member function ‘void avro::graphics::Canvas::convert()’:
/home/jenkins/util/avro/src/lib/graphics/raytracer.cpp:97:25: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   97 |   for (index_t i = 0; i < height_; i++)
      |                       ~~^~~~~~~~~
/home/jenkins/util/avro/src/lib/graphics/raytracer.cpp:98:25: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   98 |   for (index_t j = 0; j < width_; j++)
      |                       ~~^~~~~~~~
/home/jenkins/util/avro/src/lib/graphics/raytracer.cpp: In member function ‘void avro::graphics::RayTracer::render()’:
/home/jenkins/util/avro/src/lib/graphics/raytracer.cpp:435:27: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  435 |     for (index_t j = 0; j < canvas_.width(); j++) {
      |                         ~~^~~~~~~~~~~~~~~~~
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/home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp: In member function ‘void avro::graphics::PolytopeDecomposition::triangulate()’:
/home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp:136:11: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  136 |           for (index_t j = 0; j < coordinates_.size()/3; j++)
      |           ^~~
/home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp:139:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  139 |             for (index_t j = 0; j < output.numberofpoints; j++)
      |             ^~~
/home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp:139:35: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  139 |             for (index_t j = 0; j < output.numberofpoints; j++)
      |                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
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/home/jenkins/util/avro/src/lib/voronoi/diagram.cpp: In member function ‘void avro::voronoi::PowerDiagram::add_cell(const avro::voronoi::Cell&, bool)’:
/home/jenkins/util/avro/src/lib/voronoi/diagram.cpp:189:7: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  189 |       for (index_t i = 0; i < polytope.size(); i++)
      |       ^~~
/home/jenkins/util/avro/src/lib/voronoi/diagram.cpp:191:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  191 |         add( polytope.data() , polytope.size() );
      |         ^~~
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/home/jenkins/util/avro/src/bin/animate.cpp: In function ‘int avro::programs::animate(int, const char**)’:
/home/jenkins/util/avro/src/bin/animate.cpp:140:8: warning: variable ‘found’ set but not used [-Wunused-but-set-variable]
  140 |   bool found = false;
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/home/jenkins/util/avro/src/bin/check.cpp:66:19: warning: unused variable ‘topology’ [-Wunused-variable]
   66 |   Topology<type>& topology = *static_cast<Topology<type>*>(ptopology.get());
      |                   ^~~~~~~~
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cmake debug_clang
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-- The C compiler identification is Clang 12.0.0
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/home/jenkins/util/avro/src/lib/element/quadrature_cp.h:1065:7: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
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      ^
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  index_t ncolor = 256*3;
          ^
/home/jenkins/util/avro/src/lib/graphics/opengl.cpp:486:26: warning: variable 'colormap_texture' is uninitialized when used here [-Wuninitialized]
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/home/jenkins/util/avro/src/lib/graphics/opengl.cpp:480:26: note: initialize the variable 'colormap_texture' to silence this warning
  GLuint colormap_texture;
                         ^
                          = 0
/home/jenkins/util/avro/src/lib/graphics/opengl.cpp:487:25: warning: variable 'colormap_buffer' is uninitialized when used here [-Wuninitialized]
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                        ^~~~~~~~~~~~~~~
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                          ^
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[ 41%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/raytracer.cpp.o
[ 41%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/shader.cpp.o
[ 41%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/vao.cpp.o
[ 44%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/vao_polytope.cpp.o
/home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp:139:13: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
            for (index_t j = 0; j < output.numberofpoints; j++)
            ^
/home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp:136:11: note: previous statement is here
          for (index_t j = 0; j < coordinates_.size()/3; j++)
          ^
1 warning generated.
[ 44%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/webglpp.cpp.o
[ 44%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/websockets.cpp.o
[ 44%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/window.cpp.o
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[ 50%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/library.cpp.o
[ 50%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/meshb.cpp.o
[ 50%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/metric.cpp.o
[ 52%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/obj.cpp.o
[ 52%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/plots.cpp.o
[ 52%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/samples.cpp.o
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[ 55%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/boundary.cpp.o
[ 55%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/builder.cpp.o
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[ 58%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/dof.cpp.o
[ 58%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/facets.cpp.o
[ 58%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/field.cpp.o
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[ 61%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/inverse.cpp.o
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[ 61%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/mpi.cpp.o
[ 61%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/neighbours.cpp.o
[ 61%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/partition.cpp.o
[ 63%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/points.cpp.o
[ 63%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/search.cpp.o
[ 63%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/topology.cpp.o
[ 63%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/topology_polytope.cpp.o
[ 66%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/topology_simplex.cpp.o
[ 66%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/geometry.cpp.o
[ 66%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/linear_algebra.cpp.o
[ 69%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/mat.cpp.o
[ 69%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates.cpp.o
[ 69%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/sym.cpp.o
[ 69%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/tools.cpp.o
[ 72%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/vec.cpp.o
[ 72%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/orient4d.cpp.o
[ 72%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side1_exact.cpp.o
[ 72%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side2_exact.cpp.o
[ 72%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side3_exact.cpp.o
[ 75%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side4_exact.cpp.o
[ 75%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side5_exact.cpp.o
[ 75%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_10d.cpp.o
[ 75%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_3d.cpp.o
[ 77%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_4d.cpp.o
[ 77%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_5d.cpp.o
[ 77%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_6d.cpp.o
[ 77%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_7d.cpp.o
[ 80%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_8d.cpp.o
[ 80%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_9d.cpp.o
[ 80%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/bowyer_watson.cpp.o
[ 80%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/cell.cpp.o
[ 83%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/cell_nd.cpp.o
[ 83%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/diagram.cpp.o
/home/jenkins/util/avro/src/lib/voronoi/diagram.cpp:191:9: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
        add( polytope.data() , polytope.size() );
        ^
/home/jenkins/util/avro/src/lib/voronoi/diagram.cpp:189:7: note: previous statement is here
      for (index_t i = 0; i < polytope.size(); i++)
      ^
1 warning generated.
[ 83%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/facets.cpp.o
[ 83%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/optimal_transport.cpp.o
[ 83%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/particles.cpp.o
[ 86%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/vertex.cpp.o
[ 86%] Building CXX object src/CMakeFiles/avro_src.dir/bin/adapt.cpp.o
[ 86%] Building CXX object src/CMakeFiles/avro_src.dir/bin/animate.cpp.o
[ 86%] Building CXX object src/CMakeFiles/avro_src.dir/bin/arguments.cpp.o
[ 88%] Building CXX object src/CMakeFiles/avro_src.dir/bin/check.cpp.o
/home/jenkins/util/avro/src/bin/check.cpp:66:19: warning: unused variable 'topology' [-Wunused-variable]
  Topology<type>& topology = *static_cast<Topology<type>*>(ptopology.get());
                  ^
1 warning generated.
[ 88%] Building CXX object src/CMakeFiles/avro_src.dir/bin/conformity.cpp.o
[ 88%] Building CXX object src/CMakeFiles/avro_src.dir/bin/conformityp.cpp.o
[ 88%] Building CXX object src/CMakeFiles/avro_src.dir/bin/convert.cpp.o
[ 91%] Building CXX object src/CMakeFiles/avro_src.dir/bin/image.cpp.o
[ 91%] Building CXX object src/CMakeFiles/avro_src.dir/bin/plot.cpp.o
[ 94%] Built target avro_src
Consolidate compiler generated dependencies of target avro_third_party
[ 94%] Building C object src/third_party/CMakeFiles/avro_third_party.dir/libmeshb/libmeshb7.c.o
[ 94%] Building CXX object src/third_party/CMakeFiles/avro_third_party.dir/geogram/kd_tree.cpp.o
[ 97%] Building CXX object src/third_party/CMakeFiles/avro_third_party.dir/geogram/nn_search.cpp.o
[100%] Built target avro_third_party
[100%] Linking CXX static library ../lib/libavro.a
[100%] Built target avro_static
[100%] Linking CXX shared library ../lib/libavro.so
[100%] Built target avro_shared
[100%] Built target avro_lib
cmake debug_intel
-- Build type = debug
-- The C compiler identification is Intel 2021.3.0.20210609
-- The CXX compiler identification is Intel 2021.3.0.20210609
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /opt/intel/oneapi/compiler/2021.3.0/linux/bin/intel64/icc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /opt/intel/oneapi/compiler/2021.3.0/linux/bin/intel64/icpc - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- lapack not found
-- only supporting WebViewer
-- Setting intel compiler flags
-- CPU thread manager = c++11.
-- GPU threading not enabled. GPU thread manager = serial.
-- Please install kcachegrind for graphical profiling.
-- Please install massif-visualizer for graphical heap memory usage.
-- pybind11 v2.10.0 dev1
-- Configuring done
-- Generating done
-- Build files have been written to: /home/jenkins/util/avro/build/debug_intel
make -C debug_intel --no-print-directory avro_lib
Consolidate compiler generated dependencies of target avro_src
[  0%] Building CXX object src/CMakeFiles/avro_src.dir/include/avro.cpp.o
In file included from /home/jenkins/util/avro/src/lib/graphics/plot.h(13),
                 from /home/jenkins/util/avro/src/lib/graphics/application.h(16),
                 from /home/jenkins/util/avro/src/include/avro.cpp(18):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[  2%] Building CXX object src/CMakeFiles/avro_src.dir/include/avro_params.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/adapt.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/cavity.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/collapses.cpp.o
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/filter.cpp.o
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/geometry.cpp.o
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/implied_metric.cpp.o
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/insertions.cpp.o
[  8%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/metric.cpp.o
[  8%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/parallel.cpp.o
In file included from /home/jenkins/util/avro/src/lib/graphics/plot.h(13),
                 from /home/jenkins/util/avro/src/lib/graphics/application.h(16),
                 from /home/jenkins/util/avro/src/lib/adaptation/parallel.cpp(21):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[  8%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/primitive.cpp.o
[  8%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/properties.cpp.o
[  8%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/smoothing.cpp.o
[ 11%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/swaps.cpp.o
[ 11%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/crypto.cpp.o
[ 11%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/error.cpp.o
[ 11%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/kdtree.cpp.o
[ 13%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/nearest_neighbours.cpp.o
[ 13%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_cpu.cpp.o
[ 13%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_gpu.cpp.o
[ 13%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_mpi.cpp.o
[ 16%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/tools.cpp.o
In file included from /home/jenkins/util/avro/src/lib/common/tools.cpp(14):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[ 16%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/basis.cpp.o
[ 16%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_line.cpp.o
[ 16%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_pentatope.cpp.o
[ 19%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_tetrahedron.cpp.o
[ 19%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_triangle.cpp.o
[ 19%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/element.cpp.o
[ 19%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_line.cpp.o
[ 19%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_nodes.cpp.o
[ 22%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_pentatope.cpp.o
[ 22%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_tetrahedron.cpp.o
[ 22%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_triangle.cpp.o
[ 22%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_line.cpp.o
[ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_pentatope.cpp.o
[ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_tetrahedron.cpp.o
[ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_triangle.cpp.o
[ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/polytope.cpp.o
[ 27%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/quadrature.cpp.o
[ 27%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/reference.cpp.o
[ 27%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/simplex.cpp.o
[ 27%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/trace2cell.cpp.o
[ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/body.cpp.o
[ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/entity.cpp.o
[ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/model.cpp.o
[ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/tessellation.cpp.o
[ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/body.cpp.o
[ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/data.cpp.o
[ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/model.cpp.o
[ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/object.cpp.o
[ 33%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/psc/facet.cpp.o
[ 33%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/psc/node.cpp.o
[ 33%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/psc/object.cpp.o
[ 33%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/application.cpp.o
In file included from /home/jenkins/util/avro/src/lib/graphics/plot.h(13),
                 from /home/jenkins/util/avro/src/lib/graphics/application.h(16),
                 from /home/jenkins/util/avro/src/lib/graphics/application.cpp(11):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[ 36%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/bsp.cpp.o
In file included from /home/jenkins/util/avro/src/lib/graphics/plot.h(13),
                 from /home/jenkins/util/avro/src/lib/graphics/bsp.h(18),
                 from /home/jenkins/util/avro/src/lib/graphics/bsp.cpp(10):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[ 36%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/camera.cpp.o
[ 36%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/colormap.cpp.o
[ 36%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/gl.cpp.o
In file included from /home/jenkins/util/avro/src/lib/graphics/gl.cpp(10):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/gui.cpp.o
In file included from /home/jenkins/util/avro/src/lib/graphics/plot.h(13),
                 from /home/jenkins/util/avro/src/lib/graphics/bsp.h(18),
                 from /home/jenkins/util/avro/src/lib/graphics/gui.cpp(10):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/math.cpp.o
[ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/opengl.cpp.o
In file included from /home/jenkins/util/avro/src/lib/graphics/plot.h(13),
                 from /home/jenkins/util/avro/src/lib/graphics/application.h(16),
                 from /home/jenkins/util/avro/src/lib/graphics/opengl.cpp(11):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/plot.cpp.o
In file included from /home/jenkins/util/avro/src/lib/graphics/plot.h(13),
                 from /home/jenkins/util/avro/src/lib/graphics/plot.cpp(12):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/postscript.cpp.o
In file included from /home/jenkins/util/avro/src/lib/graphics/plot.h(13),
                 from /home/jenkins/util/avro/src/lib/graphics/bsp.h(18),
                 from /home/jenkins/util/avro/src/lib/graphics/postscript.cpp(10):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[ 41%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/primitives.cpp.o
In file included from /home/jenkins/util/avro/src/lib/graphics/primitives.h(15),
                 from /home/jenkins/util/avro/src/lib/graphics/primitives.cpp(12):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[ 41%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/raytracer.cpp.o
In file included from /home/jenkins/util/avro/src/lib/graphics/raytracer.cpp(12):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[ 41%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/shader.cpp.o
In file included from /home/jenkins/util/avro/src/lib/graphics/shader.h(13),
                 from /home/jenkins/util/avro/src/lib/graphics/shader.cpp(12):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[ 41%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/vao.cpp.o
In file included from /home/jenkins/util/avro/src/lib/graphics/primitives.h(15),
                 from /home/jenkins/util/avro/src/lib/graphics/vao.cpp(18):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[ 44%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/vao_polytope.cpp.o
In file included from /home/jenkins/util/avro/src/lib/graphics/primitives.h(15),
                 from /home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp(15):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[ 44%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/webglpp.cpp.o
In file included from /home/jenkins/util/avro/src/lib/graphics/primitives.h(15),
                 from /home/jenkins/util/avro/src/lib/graphics/webglpp.cpp(10):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[ 44%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/websockets.cpp.o
[ 44%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/window.cpp.o
In file included from /home/jenkins/util/avro/src/lib/graphics/vao.h(15),
                 from /home/jenkins/util/avro/src/lib/graphics/window.cpp(11):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

/home/jenkins/util/avro/src/lib/graphics/window.cpp(265): warning #823: reference is to variable "d" (declared at line 261) -- under old for-init scoping rules it would have been variable "d" (declared at line 263)
      if (plot_[k]->length_scale() > d)
                                     ^

/home/jenkins/util/avro/src/lib/graphics/window.cpp(266): warning #823: reference is to variable "d" (declared at line 261) -- under old for-init scoping rules it would have been variable "d" (declared at line 263)
        d = plot_[k]->length_scale();
        ^

[ 47%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/ckf.cpp.o
[ 47%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/csm.cpp.o
[ 47%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/egads.cpp.o
[ 47%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/eps.cpp.o
[ 50%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/factory.cpp.o
[ 50%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/field.cpp.o
[ 50%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/library.cpp.o
[ 50%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/meshb.cpp.o
[ 50%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/metric.cpp.o
/home/jenkins/util/avro/src/lib/library/metric.h(245): warning #1011: missing return statement at end of non-void function "avro::library::MetricField_UniformGeometry<type>::operator()(const avro::real_t={double} *) const"
    }
    ^

[ 52%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/obj.cpp.o
[ 52%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/plots.cpp.o
[ 52%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/samples.cpp.o
[ 52%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/spacetime.cpp.o
[ 55%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/tesseract.cpp.o
[ 55%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/boundary.cpp.o
[ 55%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/builder.cpp.o
[ 55%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/decomposition.cpp.o
[ 58%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/dof.cpp.o
[ 58%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/facets.cpp.o
[ 58%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/field.cpp.o
[ 58%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/interpolation.cpp.o
[ 61%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/inverse.cpp.o
[ 61%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/mesh.cpp.o
[ 61%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/mpi.cpp.o
[ 61%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/neighbours.cpp.o
[ 61%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/partition.cpp.o
[ 63%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/points.cpp.o
[ 63%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/search.cpp.o
[ 63%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/topology.cpp.o
[ 63%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/topology_polytope.cpp.o
[ 66%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/topology_simplex.cpp.o
[ 66%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/geometry.cpp.o
[ 66%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/linear_algebra.cpp.o
/home/jenkins/util/avro/src/lib/numerics/linear_algebra.cpp(668): warning #1011: missing return statement at end of non-void function "avro::numerics::det(const avro::symd<type> &) [with type=avro::real_t={double}]"
  }
  ^
          detected during instantiation of "type avro::numerics::det(const avro::symd<type> &) [with type=avro::real_t={double}]" at line 478

[ 69%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/mat.cpp.o
[ 69%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates.cpp.o
[ 69%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/sym.cpp.o
[ 69%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/tools.cpp.o
[ 72%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/vec.cpp.o
[ 72%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/orient4d.cpp.o
[ 72%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side1_exact.cpp.o
[ 72%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side2_exact.cpp.o
[ 72%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side3_exact.cpp.o
[ 75%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side4_exact.cpp.o
[ 75%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side5_exact.cpp.o
[ 75%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_10d.cpp.o
[ 75%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_3d.cpp.o
[ 77%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_4d.cpp.o
[ 77%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_5d.cpp.o
[ 77%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_6d.cpp.o
[ 77%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_7d.cpp.o
[ 80%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_8d.cpp.o
[ 80%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_9d.cpp.o
[ 80%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/bowyer_watson.cpp.o
[ 80%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/cell.cpp.o
[ 83%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/cell_nd.cpp.o
[ 83%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/diagram.cpp.o
[ 83%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/facets.cpp.o
[ 83%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/optimal_transport.cpp.o
[ 83%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/particles.cpp.o
[ 86%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/vertex.cpp.o
[ 86%] Building CXX object src/CMakeFiles/avro_src.dir/bin/adapt.cpp.o
In file included from /home/jenkins/util/avro/src/lib/graphics/plot.h(13),
                 from /home/jenkins/util/avro/src/lib/graphics/application.h(16),
                 from /home/jenkins/util/avro/src/bin/adapt.cpp(20):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[ 86%] Building CXX object src/CMakeFiles/avro_src.dir/bin/animate.cpp.o
In file included from /home/jenkins/util/avro/src/bin/animate.cpp(6):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[ 86%] Building CXX object src/CMakeFiles/avro_src.dir/bin/arguments.cpp.o
[ 88%] Building CXX object src/CMakeFiles/avro_src.dir/bin/check.cpp.o
In file included from /home/jenkins/util/avro/src/lib/graphics/plot.h(13),
                 from /home/jenkins/util/avro/src/lib/graphics/application.h(16),
                 from /home/jenkins/util/avro/src/bin/check.cpp(10):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[ 88%] Building CXX object src/CMakeFiles/avro_src.dir/bin/conformity.cpp.o
[ 88%] Building CXX object src/CMakeFiles/avro_src.dir/bin/conformityp.cpp.o
In file included from /home/jenkins/util/avro/src/lib/graphics/plot.h(13),
                 from /home/jenkins/util/avro/src/lib/graphics/application.h(16),
                 from /home/jenkins/util/avro/src/bin/conformityp.cpp(12):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[ 88%] Building CXX object src/CMakeFiles/avro_src.dir/bin/convert.cpp.o
In file included from /home/jenkins/util/avro/src/lib/graphics/plot.h(13),
                 from /home/jenkins/util/avro/src/lib/graphics/application.h(16),
                 from /home/jenkins/util/avro/src/bin/convert.cpp(8):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[ 91%] Building CXX object src/CMakeFiles/avro_src.dir/bin/image.cpp.o
In file included from /home/jenkins/util/avro/src/lib/graphics/plot.h(13),
                 from /home/jenkins/util/avro/src/lib/graphics/application.h(16),
                 from /home/jenkins/util/avro/src/bin/image.cpp(10):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[ 91%] Building CXX object src/CMakeFiles/avro_src.dir/bin/plot.cpp.o
In file included from /home/jenkins/util/avro/src/lib/graphics/plot.h(13),
                 from /home/jenkins/util/avro/src/lib/graphics/application.h(16),
                 from /home/jenkins/util/avro/src/bin/plot.cpp(10):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[ 94%] Built target avro_src
Consolidate compiler generated dependencies of target avro_third_party
[ 94%] Building C object src/third_party/CMakeFiles/avro_third_party.dir/libmeshb/libmeshb7.c.o
[ 94%] Building CXX object src/third_party/CMakeFiles/avro_third_party.dir/geogram/kd_tree.cpp.o
[ 97%] Building CXX object src/third_party/CMakeFiles/avro_third_party.dir/geogram/nn_search.cpp.o
[100%] Built target avro_third_party
[100%] Linking CXX static library ../lib/libavro.a
[100%] Built target avro_static
[100%] Linking CXX shared library ../lib/libavro.so
[100%] Built target avro_shared
[100%] Built target avro_lib
cmake release_gnu9
-- Build type = release
-- The C compiler identification is GNU 9.4.0
-- The CXX compiler identification is GNU 9.4.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc-9 - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++-9 - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- lapack not found
-- compiling built-in glfw3
-- Setting gnu compiler flags
-- CPU thread manager = c++11.
-- GPU threading not enabled. GPU thread manager = serial.
-- Please install kcachegrind for graphical profiling.
-- Please install massif-visualizer for graphical heap memory usage.
-- pybind11 v2.10.0 dev1
-- Using X11 for window creation
-- Configuring done
-- Generating done
-- Build files have been written to: /home/jenkins/util/avro/build/release_gnu9
make -C release_gnu9 --no-print-directory avro_lib
Consolidate compiler generated dependencies of target avro_src
[  0%] Building CXX object src/CMakeFiles/avro_src.dir/include/avro.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/include/avro_params.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/adapt.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/cavity.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/collapses.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/filter.cpp.o
/home/jenkins/util/avro/src/lib/adaptation/filter.cpp: In member function ‘void avro::Filter::generateCandidates(avro::Topology<avro::Simplex>&, avro::MetricField<avro::Simplex>&, avro::real_t, avro::Insert<avro::Simplex>&)’:
/home/jenkins/util/avro/src/lib/adaptation/filter.cpp:139:11: warning: variable ‘TIME0’ set but not used [-Wunused-but-set-variable]
  139 |   clock_t TIME0, TIME1;
      |           ^~~~~
/home/jenkins/util/avro/src/lib/adaptation/filter.cpp:139:18: warning: variable ‘TIME1’ set but not used [-Wunused-but-set-variable]
  139 |   clock_t TIME0, TIME1;
      |                  ^~~~~
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/geometry.cpp.o
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/implied_metric.cpp.o
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp: In instantiation of ‘void avro::ElementImpliedMetric<type>::compute(const std::vector<const double*>&) [with type = avro::Simplex]’:
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:638:16:   required from here
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:96:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
   96 |   J_ = J0_*Jeq_;
      |   ~~~^~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:99:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
   99 |   M_ = numerics::inverse( JJt );
      |   ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp: In instantiation of ‘void avro::ElementImpliedMetric<type>::compute(const avro::Points&, const index_t*, avro::index_t) [with type = avro::Simplex; avro::index_t = long unsigned int]’:
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:638:16:   required from here
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:110:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
  110 |   J_ = J0_*Jeq_;
      |   ~~~^~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:113:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
  113 |   M_ = numerics::inverse( JJt );
      |   ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp: In instantiation of ‘void avro::ElementImpliedMetric<type>::inverse(const avro::Points&, const index_t*, avro::index_t) [with type = avro::Simplex; avro::index_t = long unsigned int]’:
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:638:16:   required from here
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:125:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
  125 |   J_ = J0_*Jeq_;
      |   ~~~^~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:126:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
  126 |   M_ = J_*numerics::transpose(J_); // no inverse
      |   ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/insertions.cpp.o
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/metric.cpp.o
/home/jenkins/util/avro/src/lib/adaptation/metric.cpp: In instantiation of ‘avro::real_t avro::MetricField<type>::length(avro::index_t, avro::index_t) const [with type = avro::Simplex; avro::real_t = double; avro::index_t = long unsigned int]’:
/home/jenkins/util/avro/src/lib/adaptation/metric.cpp:708:16:   required from here
/home/jenkins/util/avro/src/lib/adaptation/metric.cpp:146:10: warning: variable ‘dim’ set but not used [-Wunused-but-set-variable]
  146 |  coord_t dim = topology_.points().dim();
      |          ^~~
[  7%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/parallel.cpp.o
[  7%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/primitive.cpp.o
[  7%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/properties.cpp.o
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[  7%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/swaps.cpp.o
[ 10%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/crypto.cpp.o
[ 10%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/error.cpp.o
[ 10%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/kdtree.cpp.o
[ 10%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/nearest_neighbours.cpp.o
[ 12%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_cpu.cpp.o
[ 12%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_gpu.cpp.o
[ 12%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_mpi.cpp.o
[ 12%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/tools.cpp.o
[ 12%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/basis.cpp.o
[ 15%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_line.cpp.o
[ 15%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_pentatope.cpp.o
[ 15%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_tetrahedron.cpp.o
[ 15%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_triangle.cpp.o
[ 17%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/element.cpp.o
[ 17%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_line.cpp.o
[ 17%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_nodes.cpp.o
[ 17%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_pentatope.cpp.o
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[ 20%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_triangle.cpp.o
[ 20%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_line.cpp.o
/home/jenkins/util/avro/src/lib/element/legendre_line.cpp: In static member function ‘static void avro::Legendre<avro::Simplex, N, P>::eval(const double*, double*) [with int N = 1; int P = 0]’:
/home/jenkins/util/avro/src/lib/element/legendre_line.cpp:24:10: warning: unused variable ‘s’ [-Wunused-variable]
   24 |   real_t s = x[0];
      |          ^
[ 20%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_pentatope.cpp.o
[ 20%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_tetrahedron.cpp.o
[ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_triangle.cpp.o
[ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/polytope.cpp.o
[ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/quadrature.cpp.o
/home/jenkins/util/avro/src/lib/element/quadrature.cpp: In instantiation of ‘void avro::QuadratureStore<type>::build() [with type = avro::Simplex]’:
/home/jenkins/util/avro/src/lib/element/quadrature.cpp:38:3:   required from ‘avro::QuadratureStore<type>::QuadratureStore(avro::BasisFunctionCategory) [with type = avro::Simplex]’
/home/jenkins/util/avro/src/lib/element/quadrature.cpp:26:83:   required from here
/home/jenkins/util/avro/src/lib/element/quadrature.cpp:93:16: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
   93 |           B[d] = matd<real_t>( nb_basis , quad.nb() );
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/quadrature.cpp:14:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/element/quadrature.cpp:114:16: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
  114 |           B[d] = Ainv*B[d]; // convert modal basis to nodal basis
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/quadrature.cpp:14:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
[ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/reference.cpp.o
[ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/simplex.cpp.o
/home/jenkins/util/avro/src/lib/element/simplex.cpp: In member function ‘void avro::Simplex::precalculate()’:
/home/jenkins/util/avro/src/lib/element/simplex.cpp:120:25: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  120 |   for (index_t k = 0; k < number_+1; k++)
      |                       ~~^~~~~~~~~~~
[ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/trace2cell.cpp.o
[ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/body.cpp.o
[ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/entity.cpp.o
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[ 28%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/body.cpp.o
[ 28%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/data.cpp.o
[ 28%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/model.cpp.o
[ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/object.cpp.o
[ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/psc/facet.cpp.o
[ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/psc/node.cpp.o
[ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/psc/object.cpp.o
[ 33%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/application.cpp.o
[ 33%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/bsp.cpp.o
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[ 35%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/gui.cpp.o
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[ 35%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/opengl.cpp.o
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[ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/raytracer.cpp.o
/home/jenkins/util/avro/src/lib/graphics/raytracer.cpp: In member function ‘void avro::graphics::Canvas::convert()’:
/home/jenkins/util/avro/src/lib/graphics/raytracer.cpp:97:25: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   97 |   for (index_t i = 0; i < height_; i++)
      |                       ~~^~~~~~~~~
/home/jenkins/util/avro/src/lib/graphics/raytracer.cpp:98:25: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   98 |   for (index_t j = 0; j < width_; j++)
      |                       ~~^~~~~~~~
/home/jenkins/util/avro/src/lib/graphics/raytracer.cpp: In member function ‘void avro::graphics::RayTracer::render()’:
/home/jenkins/util/avro/src/lib/graphics/raytracer.cpp:435:27: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  435 |     for (index_t j = 0; j < canvas_.width(); j++) {
      |                         ~~^~~~~~~~~~~~~~~~~
[ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/shader.cpp.o
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/home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp: In member function ‘void avro::graphics::PolytopeDecomposition::triangulate()’:
/home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp:136:11: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  136 |           for (index_t j = 0; j < coordinates_.size()/3; j++)
      |           ^~~
/home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp:139:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  139 |             for (index_t j = 0; j < output.numberofpoints; j++)
      |             ^~~
/home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp:139:35: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  139 |             for (index_t j = 0; j < output.numberofpoints; j++)
      |                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
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/home/jenkins/util/avro/src/lib/voronoi/diagram.cpp: In member function ‘void avro::voronoi::PowerDiagram::add_cell(const avro::voronoi::Cell&, bool)’:
/home/jenkins/util/avro/src/lib/voronoi/diagram.cpp:189:7: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  189 |       for (index_t i = 0; i < polytope.size(); i++)
      |       ^~~
/home/jenkins/util/avro/src/lib/voronoi/diagram.cpp:191:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  191 |         add( polytope.data() , polytope.size() );
      |         ^~~
[ 74%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/facets.cpp.o
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/home/jenkins/util/avro/src/bin/animate.cpp: In function ‘int avro::programs::animate(int, const char**)’:
/home/jenkins/util/avro/src/bin/animate.cpp:140:8: warning: variable ‘found’ set but not used [-Wunused-but-set-variable]
  140 |   bool found = false;
      |        ^~~~~
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/home/jenkins/util/avro/src/bin/check.cpp: In function ‘int avro::programs::check(int, const char**)’:
/home/jenkins/util/avro/src/bin/check.cpp:66:19: warning: unused variable ‘topology’ [-Wunused-variable]
   66 |   Topology<type>& topology = *static_cast<Topology<type>*>(ptopology.get());
      |                   ^~~~~~~~
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cmake release_gnu10
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-- Detecting CXX compile features - done
-- lapack not found
-- compiling built-in glfw3
-- Setting gnu compiler flags
-- CPU thread manager = c++11.
-- GPU threading not enabled. GPU thread manager = serial.
-- Please install kcachegrind for graphical profiling.
-- Please install massif-visualizer for graphical heap memory usage.
-- pybind11 v2.10.0 dev1
-- Using X11 for window creation
-- Configuring done
-- Generating done
-- Build files have been written to: /home/jenkins/util/avro/build/release_gnu10
make -C release_gnu10 --no-print-directory avro_lib
Consolidate compiler generated dependencies of target avro_src
[  0%] Building CXX object src/CMakeFiles/avro_src.dir/include/avro.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/include/avro_params.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/adapt.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/cavity.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/collapses.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/filter.cpp.o
/home/jenkins/util/avro/src/lib/adaptation/filter.cpp: In member function ‘void avro::Filter::generateCandidates(avro::Topology<avro::Simplex>&, avro::MetricField<avro::Simplex>&, avro::real_t, avro::Insert<avro::Simplex>&)’:
/home/jenkins/util/avro/src/lib/adaptation/filter.cpp:139:11: warning: variable ‘TIME0’ set but not used [-Wunused-but-set-variable]
  139 |   clock_t TIME0, TIME1;
      |           ^~~~~
/home/jenkins/util/avro/src/lib/adaptation/filter.cpp:139:18: warning: variable ‘TIME1’ set but not used [-Wunused-but-set-variable]
  139 |   clock_t TIME0, TIME1;
      |                  ^~~~~
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/geometry.cpp.o
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/implied_metric.cpp.o
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp: In instantiation of ‘void avro::ElementImpliedMetric<type>::compute(const std::vector<const double*>&) [with type = avro::Simplex]’:
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:638:16:   required from here
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:96:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
   96 |   J_ = J0_*Jeq_;
      |   ~~~^~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:99:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
   99 |   M_ = numerics::inverse( JJt );
      |   ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp: In instantiation of ‘void avro::ElementImpliedMetric<type>::compute(const avro::Points&, const index_t*, avro::index_t) [with type = avro::Simplex; avro::index_t = long unsigned int]’:
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:638:16:   required from here
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:110:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
  110 |   J_ = J0_*Jeq_;
      |   ~~~^~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:113:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
  113 |   M_ = numerics::inverse( JJt );
      |   ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp: In instantiation of ‘void avro::ElementImpliedMetric<type>::inverse(const avro::Points&, const index_t*, avro::index_t) [with type = avro::Simplex; avro::index_t = long unsigned int]’:
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:638:16:   required from here
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:125:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
  125 |   J_ = J0_*Jeq_;
      |   ~~~^~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:126:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
  126 |   M_ = J_*numerics::transpose(J_); // no inverse
      |   ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/insertions.cpp.o
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/metric.cpp.o
/home/jenkins/util/avro/src/lib/adaptation/metric.cpp: In instantiation of ‘avro::real_t avro::MetricField<type>::length(avro::index_t, avro::index_t) const [with type = avro::Simplex; avro::real_t = double; avro::index_t = long unsigned int]’:
/home/jenkins/util/avro/src/lib/adaptation/metric.cpp:708:16:   required from here
/home/jenkins/util/avro/src/lib/adaptation/metric.cpp:146:10: warning: variable ‘dim’ set but not used [-Wunused-but-set-variable]
  146 |  coord_t dim = topology_.points().dim();
      |          ^~~
[  7%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/parallel.cpp.o
[  7%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/primitive.cpp.o
[  7%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/properties.cpp.o
[  7%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/smoothing.cpp.o
[  7%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/swaps.cpp.o
[ 10%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/crypto.cpp.o
[ 10%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/error.cpp.o
[ 10%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/kdtree.cpp.o
[ 10%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/nearest_neighbours.cpp.o
[ 12%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_cpu.cpp.o
[ 12%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_gpu.cpp.o
[ 12%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_mpi.cpp.o
[ 12%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/tools.cpp.o
[ 12%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/basis.cpp.o
[ 15%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_line.cpp.o
[ 15%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_pentatope.cpp.o
[ 15%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_tetrahedron.cpp.o
[ 15%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_triangle.cpp.o
[ 17%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/element.cpp.o
[ 17%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_line.cpp.o
[ 17%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_nodes.cpp.o
[ 17%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_pentatope.cpp.o
[ 17%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_tetrahedron.cpp.o
[ 20%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_triangle.cpp.o
[ 20%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_line.cpp.o
/home/jenkins/util/avro/src/lib/element/legendre_line.cpp: In static member function ‘static void avro::Legendre<avro::Simplex, N, P>::eval(const double*, double*) [with int N = 1; int P = 0]’:
/home/jenkins/util/avro/src/lib/element/legendre_line.cpp:24:10: warning: unused variable ‘s’ [-Wunused-variable]
   24 |   real_t s = x[0];
      |          ^
[ 20%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_pentatope.cpp.o
[ 20%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_tetrahedron.cpp.o
[ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_triangle.cpp.o
[ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/polytope.cpp.o
[ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/quadrature.cpp.o
/home/jenkins/util/avro/src/lib/element/quadrature.cpp: In instantiation of ‘void avro::QuadratureStore<type>::build() [with type = avro::Simplex]’:
/home/jenkins/util/avro/src/lib/element/quadrature.cpp:38:3:   required from ‘avro::QuadratureStore<type>::QuadratureStore(avro::BasisFunctionCategory) [with type = avro::Simplex]’
/home/jenkins/util/avro/src/lib/element/quadrature.cpp:26:83:   required from here
/home/jenkins/util/avro/src/lib/element/quadrature.cpp:93:16: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
   93 |           B[d] = matd<real_t>( nb_basis , quad.nb() );
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/quadrature.cpp:14:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/element/quadrature.cpp:114:16: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
  114 |           B[d] = Ainv*B[d]; // convert modal basis to nodal basis
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/quadrature.cpp:14:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
[ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/reference.cpp.o
[ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/simplex.cpp.o
/home/jenkins/util/avro/src/lib/element/simplex.cpp: In member function ‘void avro::Simplex::precalculate()’:
/home/jenkins/util/avro/src/lib/element/simplex.cpp:120:25: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  120 |   for (index_t k = 0; k < number_+1; k++)
      |                       ~~^~~~~~~~~~~
[ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/trace2cell.cpp.o
[ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/body.cpp.o
[ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/entity.cpp.o
[ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/model.cpp.o
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[ 28%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/data.cpp.o
[ 28%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/model.cpp.o
[ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/object.cpp.o
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[ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/raytracer.cpp.o
/home/jenkins/util/avro/src/lib/graphics/raytracer.cpp: In member function ‘void avro::graphics::Canvas::convert()’:
/home/jenkins/util/avro/src/lib/graphics/raytracer.cpp:97:25: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   97 |   for (index_t i = 0; i < height_; i++)
      |                       ~~^~~~~~~~~
/home/jenkins/util/avro/src/lib/graphics/raytracer.cpp:98:25: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   98 |   for (index_t j = 0; j < width_; j++)
      |                       ~~^~~~~~~~
/home/jenkins/util/avro/src/lib/graphics/raytracer.cpp: In member function ‘void avro::graphics::RayTracer::render()’:
/home/jenkins/util/avro/src/lib/graphics/raytracer.cpp:435:27: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  435 |     for (index_t j = 0; j < canvas_.width(); j++) {
      |                         ~~^~~~~~~~~~~~~~~~~
[ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/shader.cpp.o
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[ 41%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/vao_polytope.cpp.o
/home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp: In member function ‘void avro::graphics::PolytopeDecomposition::triangulate()’:
/home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp:136:11: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  136 |           for (index_t j = 0; j < coordinates_.size()/3; j++)
      |           ^~~
/home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp:139:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  139 |             for (index_t j = 0; j < output.numberofpoints; j++)
      |             ^~~
/home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp:139:35: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  139 |             for (index_t j = 0; j < output.numberofpoints; j++)
      |                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
[ 41%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/webglpp.cpp.o
[ 41%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/websockets.cpp.o
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[ 46%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/field.cpp.o
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[ 74%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/diagram.cpp.o
/home/jenkins/util/avro/src/lib/voronoi/diagram.cpp: In member function ‘void avro::voronoi::PowerDiagram::add_cell(const avro::voronoi::Cell&, bool)’:
/home/jenkins/util/avro/src/lib/voronoi/diagram.cpp:189:7: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  189 |       for (index_t i = 0; i < polytope.size(); i++)
      |       ^~~
/home/jenkins/util/avro/src/lib/voronoi/diagram.cpp:191:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  191 |         add( polytope.data() , polytope.size() );
      |         ^~~
[ 74%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/facets.cpp.o
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[ 76%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/vertex.cpp.o
[ 76%] Building CXX object src/CMakeFiles/avro_src.dir/bin/adapt.cpp.o
[ 76%] Building CXX object src/CMakeFiles/avro_src.dir/bin/animate.cpp.o
/home/jenkins/util/avro/src/bin/animate.cpp: In function ‘int avro::programs::animate(int, const char**)’:
/home/jenkins/util/avro/src/bin/animate.cpp:140:8: warning: variable ‘found’ set but not used [-Wunused-but-set-variable]
  140 |   bool found = false;
      |        ^~~~~
[ 79%] Building CXX object src/CMakeFiles/avro_src.dir/bin/arguments.cpp.o
[ 79%] Building CXX object src/CMakeFiles/avro_src.dir/bin/check.cpp.o
/home/jenkins/util/avro/src/bin/check.cpp: In function ‘int avro::programs::check(int, const char**)’:
/home/jenkins/util/avro/src/bin/check.cpp:66:19: warning: unused variable ‘topology’ [-Wunused-variable]
   66 |   Topology<type>& topology = *static_cast<Topology<type>*>(ptopology.get());
      |                   ^~~~~~~~
[ 79%] Building CXX object src/CMakeFiles/avro_src.dir/bin/conformity.cpp.o
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[ 82%] Built target avro_src
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[ 89%] Built target avro_third_party
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[ 89%] Building C object src/third_party/glfw/src/CMakeFiles/glfw.dir/context.c.o
[ 92%] Building C object src/third_party/glfw/src/CMakeFiles/glfw.dir/init.c.o
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[100%] Building C object src/third_party/glfw/src/CMakeFiles/glfw.dir/linux_joystick.c.o
[100%] Linking C static library ../../../../lib/libglfw3.a
[100%] Built target glfw
[100%] Linking CXX static library ../lib/libavro.a
[100%] Built target avro_static
[100%] Linking CXX shared library ../lib/libavro.so
[100%] Built target avro_shared
[100%] Built target avro_lib
cmake release_gnu11
-- Build type = release
-- The C compiler identification is GNU 11.1.0
-- The CXX compiler identification is GNU 11.1.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc-11 - skipped
-- Detecting C compile features
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-- Detecting CXX compiler ABI info
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-- Check for working CXX compiler: /usr/bin/g++-11 - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- lapack not found
-- compiling built-in glfw3
-- Setting gnu compiler flags
-- CPU thread manager = c++11.
-- GPU threading not enabled. GPU thread manager = serial.
-- Please install kcachegrind for graphical profiling.
-- Please install massif-visualizer for graphical heap memory usage.
-- pybind11 v2.10.0 dev1
-- Using X11 for window creation
-- Configuring done
-- Generating done
-- Build files have been written to: /home/jenkins/util/avro/build/release_gnu11
make -C release_gnu11 --no-print-directory avro_lib
Consolidate compiler generated dependencies of target avro_src
[  0%] Building CXX object src/CMakeFiles/avro_src.dir/include/avro.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/include/avro_params.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/adapt.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/cavity.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/collapses.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/filter.cpp.o
/home/jenkins/util/avro/src/lib/adaptation/filter.cpp: In member function ‘void avro::Filter::generateCandidates(avro::Topology<avro::Simplex>&, avro::MetricField<avro::Simplex>&, avro::real_t, avro::Insert<avro::Simplex>&)’:
/home/jenkins/util/avro/src/lib/adaptation/filter.cpp:139:11: warning: variable ‘TIME0’ set but not used [-Wunused-but-set-variable]
  139 |   clock_t TIME0, TIME1;
      |           ^~~~~
/home/jenkins/util/avro/src/lib/adaptation/filter.cpp:139:18: warning: variable ‘TIME1’ set but not used [-Wunused-but-set-variable]
  139 |   clock_t TIME0, TIME1;
      |                  ^~~~~
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/geometry.cpp.o
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/implied_metric.cpp.o
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp: In instantiation of ‘void avro::ElementImpliedMetric<type>::compute(const std::vector<const double*>&) [with type = avro::Simplex]’:
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:638:16:   required from here
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:96:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
   96 |   J_ = J0_*Jeq_;
      |   ~~~^~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:99:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
   99 |   M_ = numerics::inverse( JJt );
      |   ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp: In instantiation of ‘void avro::ElementImpliedMetric<type>::compute(const avro::Points&, const index_t*, avro::index_t) [with type = avro::Simplex; avro::index_t = long unsigned int]’:
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:638:16:   required from here
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:110:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
  110 |   J_ = J0_*Jeq_;
      |   ~~~^~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:113:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
  113 |   M_ = numerics::inverse( JJt );
      |   ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp: In instantiation of ‘void avro::ElementImpliedMetric<type>::inverse(const avro::Points&, const index_t*, avro::index_t) [with type = avro::Simplex; avro::index_t = long unsigned int]’:
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:638:16:   required from here
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:125:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
  125 |   J_ = J0_*Jeq_;
      |   ~~~^~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:126:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
  126 |   M_ = J_*numerics::transpose(J_); // no inverse
      |   ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/insertions.cpp.o
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/metric.cpp.o
/home/jenkins/util/avro/src/lib/adaptation/metric.cpp: In instantiation of ‘avro::real_t avro::MetricField<type>::length(avro::index_t, avro::index_t) const [with type = avro::Simplex; avro::real_t = double; avro::index_t = long unsigned int]’:
/home/jenkins/util/avro/src/lib/adaptation/metric.cpp:708:16:   required from here
/home/jenkins/util/avro/src/lib/adaptation/metric.cpp:146:17: warning: variable ‘dim’ set but not used [-Wunused-but-set-variable]
  146 |         coord_t dim = topology_.points().dim();
      |                 ^~~
[  7%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/parallel.cpp.o
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[ 10%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/crypto.cpp.o
[ 10%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/error.cpp.o
[ 10%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/kdtree.cpp.o
[ 10%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/nearest_neighbours.cpp.o
[ 12%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_cpu.cpp.o
[ 12%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_gpu.cpp.o
[ 12%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_mpi.cpp.o
[ 12%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/tools.cpp.o
[ 12%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/basis.cpp.o
[ 15%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_line.cpp.o
[ 15%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_pentatope.cpp.o
[ 15%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_tetrahedron.cpp.o
[ 15%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_triangle.cpp.o
[ 17%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/element.cpp.o
[ 17%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_line.cpp.o
[ 17%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_nodes.cpp.o
[ 17%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_pentatope.cpp.o
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[ 20%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_line.cpp.o
/home/jenkins/util/avro/src/lib/element/legendre_line.cpp: In static member function ‘static void avro::Legendre<avro::Simplex, N, P>::eval(const double*, double*) [with int N = 1; int P = 0]’:
/home/jenkins/util/avro/src/lib/element/legendre_line.cpp:24:10: warning: unused variable ‘s’ [-Wunused-variable]
   24 |   real_t s = x[0];
      |          ^
[ 20%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_pentatope.cpp.o
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[ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_triangle.cpp.o
[ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/polytope.cpp.o
[ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/quadrature.cpp.o
/home/jenkins/util/avro/src/lib/element/quadrature.cpp: In instantiation of ‘void avro::QuadratureStore<type>::build() [with type = avro::Simplex]’:
/home/jenkins/util/avro/src/lib/element/quadrature.cpp:38:3:   required from ‘avro::QuadratureStore<type>::QuadratureStore(avro::BasisFunctionCategory) [with type = avro::Simplex]’
/home/jenkins/util/avro/src/lib/element/quadrature.cpp:26:83:   required from here
/home/jenkins/util/avro/src/lib/element/quadrature.cpp:93:16: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
   93 |           B[d] = matd<real_t>( nb_basis , quad.nb() );
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/quadrature.cpp:14:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/element/quadrature.cpp:114:16: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
  114 |           B[d] = Ainv*B[d]; // convert modal basis to nodal basis
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/quadrature.cpp:14:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
[ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/reference.cpp.o
[ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/simplex.cpp.o
/home/jenkins/util/avro/src/lib/element/simplex.cpp: In member function ‘void avro::Simplex::precalculate()’:
/home/jenkins/util/avro/src/lib/element/simplex.cpp:120:25: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  120 |   for (index_t k = 0; k < number_+1; k++)
      |                       ~~^~~~~~~~~~~
[ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/trace2cell.cpp.o
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/home/jenkins/util/avro/src/lib/graphics/raytracer.cpp: In member function ‘void avro::graphics::Canvas::convert()’:
/home/jenkins/util/avro/src/lib/graphics/raytracer.cpp:97:25: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   97 |   for (index_t i = 0; i < height_; i++)
      |                       ~~^~~~~~~~~
/home/jenkins/util/avro/src/lib/graphics/raytracer.cpp:98:25: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   98 |   for (index_t j = 0; j < width_; j++)
      |                       ~~^~~~~~~~
/home/jenkins/util/avro/src/lib/graphics/raytracer.cpp: In member function ‘void avro::graphics::RayTracer::render()’:
/home/jenkins/util/avro/src/lib/graphics/raytracer.cpp:435:27: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  435 |     for (index_t j = 0; j < canvas_.width(); j++) {
      |                         ~~^~~~~~~~~~~~~~~~~
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/home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp: In member function ‘void avro::graphics::PolytopeDecomposition::triangulate()’:
/home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp:136:11: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  136 |           for (index_t j = 0; j < coordinates_.size()/3; j++)
      |           ^~~
/home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp:139:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  139 |             for (index_t j = 0; j < output.numberofpoints; j++)
      |             ^~~
/home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp:139:35: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  139 |             for (index_t j = 0; j < output.numberofpoints; j++)
      |                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
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/home/jenkins/util/avro/src/lib/voronoi/diagram.cpp: In member function ‘void avro::voronoi::PowerDiagram::add_cell(const avro::voronoi::Cell&, bool)’:
/home/jenkins/util/avro/src/lib/voronoi/diagram.cpp:189:7: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  189 |       for (index_t i = 0; i < polytope.size(); i++)
      |       ^~~
/home/jenkins/util/avro/src/lib/voronoi/diagram.cpp:191:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  191 |         add( polytope.data() , polytope.size() );
      |         ^~~
[ 74%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/facets.cpp.o
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/home/jenkins/util/avro/src/bin/animate.cpp: In function ‘int avro::programs::animate(int, const char**)’:
/home/jenkins/util/avro/src/bin/animate.cpp:140:8: warning: variable ‘found’ set but not used [-Wunused-but-set-variable]
  140 |   bool found = false;
      |        ^~~~~
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/home/jenkins/util/avro/src/bin/check.cpp: In function ‘int avro::programs::check(int, const char**)’:
/home/jenkins/util/avro/src/bin/check.cpp:66:19: warning: unused variable ‘topology’ [-Wunused-variable]
   66 |   Topology<type>& topology = *static_cast<Topology<type>*>(ptopology.get());
      |                   ^~~~~~~~
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cmake release_clang
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  real_t s = x[0];
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In file included from /home/jenkins/util/avro/src/lib/element/quadrature.cpp:18:
/home/jenkins/util/avro/src/lib/element/quadrature_cp.h:1065:7: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
      for (int k = 0; k < order; k++)
      ^
/home/jenkins/util/avro/src/lib/element/quadrature_cp.h:1061:5: note: previous statement is here
    for (int j = 0; j < nDim; j++)
    ^
1 warning generated.
[ 27%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/reference.cpp.o
[ 27%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/simplex.cpp.o
[ 27%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/trace2cell.cpp.o
[ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/body.cpp.o
[ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/entity.cpp.o
[ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/model.cpp.o
[ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/tessellation.cpp.o
[ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/body.cpp.o
[ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/data.cpp.o
[ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/model.cpp.o
[ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/object.cpp.o
[ 33%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/psc/facet.cpp.o
[ 33%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/psc/node.cpp.o
[ 33%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/psc/object.cpp.o
[ 33%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/application.cpp.o
[ 36%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/bsp.cpp.o
[ 36%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/camera.cpp.o
[ 36%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/colormap.cpp.o
[ 36%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/gl.cpp.o
[ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/gui.cpp.o
/home/jenkins/util/avro/src/lib/graphics/gui.cpp:71:1: warning: unused function 'convert_to_char' [-Wunused-function]
convert_to_char( const std::vector<std::string>& s ) {
^
1 warning generated.
[ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/math.cpp.o
[ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/opengl.cpp.o
/home/jenkins/util/avro/src/lib/graphics/opengl.cpp:475:11: warning: unused variable 'ncolor' [-Wunused-variable]
  index_t ncolor = 256*3;
          ^
/home/jenkins/util/avro/src/lib/graphics/opengl.cpp:486:26: warning: variable 'colormap_texture' is uninitialized when used here [-Wuninitialized]
  manager_.track_texture(colormap_texture);
                         ^~~~~~~~~~~~~~~~
/home/jenkins/util/avro/src/lib/graphics/opengl.cpp:480:26: note: initialize the variable 'colormap_texture' to silence this warning
  GLuint colormap_texture;
                         ^
                          = 0
/home/jenkins/util/avro/src/lib/graphics/opengl.cpp:487:25: warning: variable 'colormap_buffer' is uninitialized when used here [-Wuninitialized]
  manager_.track_buffer(colormap_buffer);
                        ^~~~~~~~~~~~~~~
/home/jenkins/util/avro/src/lib/graphics/opengl.cpp:471:27: note: initialize the variable 'colormap_buffer' to silence this warning
  gl_index colormap_buffer;
                          ^
                           = 0
3 warnings generated.
[ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/plot.cpp.o
[ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/postscript.cpp.o
[ 41%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/primitives.cpp.o
[ 41%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/raytracer.cpp.o
[ 41%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/shader.cpp.o
[ 41%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/vao.cpp.o
[ 44%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/vao_polytope.cpp.o
/home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp:139:13: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
            for (index_t j = 0; j < output.numberofpoints; j++)
            ^
/home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp:136:11: note: previous statement is here
          for (index_t j = 0; j < coordinates_.size()/3; j++)
          ^
1 warning generated.
[ 44%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/webglpp.cpp.o
[ 44%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/websockets.cpp.o
[ 44%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/window.cpp.o
[ 47%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/ckf.cpp.o
[ 47%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/csm.cpp.o
[ 47%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/egads.cpp.o
[ 47%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/eps.cpp.o
[ 50%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/factory.cpp.o
[ 50%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/field.cpp.o
[ 50%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/library.cpp.o
[ 50%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/meshb.cpp.o
[ 50%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/metric.cpp.o
[ 52%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/obj.cpp.o
[ 52%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/plots.cpp.o
[ 52%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/samples.cpp.o
[ 52%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/spacetime.cpp.o
[ 55%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/tesseract.cpp.o
[ 55%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/boundary.cpp.o
[ 55%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/builder.cpp.o
[ 55%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/decomposition.cpp.o
[ 58%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/dof.cpp.o
[ 58%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/facets.cpp.o
[ 58%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/field.cpp.o
[ 58%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/interpolation.cpp.o
[ 61%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/inverse.cpp.o
[ 61%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/mesh.cpp.o
[ 61%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/mpi.cpp.o
[ 61%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/neighbours.cpp.o
[ 61%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/partition.cpp.o
[ 63%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/points.cpp.o
[ 63%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/search.cpp.o
[ 63%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/topology.cpp.o
[ 63%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/topology_polytope.cpp.o
[ 66%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/topology_simplex.cpp.o
[ 66%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/geometry.cpp.o
[ 66%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/linear_algebra.cpp.o
[ 69%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/mat.cpp.o
[ 69%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates.cpp.o
[ 69%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/sym.cpp.o
[ 69%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/tools.cpp.o
[ 72%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/vec.cpp.o
[ 72%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/orient4d.cpp.o
[ 72%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side1_exact.cpp.o
[ 72%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side2_exact.cpp.o
[ 72%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side3_exact.cpp.o
[ 75%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side4_exact.cpp.o
[ 75%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side5_exact.cpp.o
[ 75%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_10d.cpp.o
[ 75%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_3d.cpp.o
[ 77%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_4d.cpp.o
[ 77%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_5d.cpp.o
[ 77%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_6d.cpp.o
[ 77%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_7d.cpp.o
[ 80%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_8d.cpp.o
[ 80%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_9d.cpp.o
[ 80%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/bowyer_watson.cpp.o
[ 80%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/cell.cpp.o
[ 83%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/cell_nd.cpp.o
[ 83%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/diagram.cpp.o
/home/jenkins/util/avro/src/lib/voronoi/diagram.cpp:191:9: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
        add( polytope.data() , polytope.size() );
        ^
/home/jenkins/util/avro/src/lib/voronoi/diagram.cpp:189:7: note: previous statement is here
      for (index_t i = 0; i < polytope.size(); i++)
      ^
1 warning generated.
[ 83%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/facets.cpp.o
[ 83%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/optimal_transport.cpp.o
[ 83%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/particles.cpp.o
[ 86%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/vertex.cpp.o
[ 86%] Building CXX object src/CMakeFiles/avro_src.dir/bin/adapt.cpp.o
[ 86%] Building CXX object src/CMakeFiles/avro_src.dir/bin/animate.cpp.o
[ 86%] Building CXX object src/CMakeFiles/avro_src.dir/bin/arguments.cpp.o
[ 88%] Building CXX object src/CMakeFiles/avro_src.dir/bin/check.cpp.o
/home/jenkins/util/avro/src/bin/check.cpp:66:19: warning: unused variable 'topology' [-Wunused-variable]
  Topology<type>& topology = *static_cast<Topology<type>*>(ptopology.get());
                  ^
1 warning generated.
[ 88%] Building CXX object src/CMakeFiles/avro_src.dir/bin/conformity.cpp.o
[ 88%] Building CXX object src/CMakeFiles/avro_src.dir/bin/conformityp.cpp.o
[ 88%] Building CXX object src/CMakeFiles/avro_src.dir/bin/convert.cpp.o
[ 91%] Building CXX object src/CMakeFiles/avro_src.dir/bin/image.cpp.o
[ 91%] Building CXX object src/CMakeFiles/avro_src.dir/bin/plot.cpp.o
[ 94%] Built target avro_src
Consolidate compiler generated dependencies of target avro_third_party
[ 94%] Building C object src/third_party/CMakeFiles/avro_third_party.dir/libmeshb/libmeshb7.c.o
[ 94%] Building CXX object src/third_party/CMakeFiles/avro_third_party.dir/geogram/kd_tree.cpp.o
[ 97%] Building CXX object src/third_party/CMakeFiles/avro_third_party.dir/geogram/nn_search.cpp.o
[100%] Built target avro_third_party
[100%] Linking CXX static library ../lib/libavro.a
[100%] Built target avro_static
[100%] Linking CXX shared library ../lib/libavro.so
[100%] Built target avro_shared
[100%] Built target avro_lib
cmake release_intel
-- Build type = release
-- The C compiler identification is Intel 2021.3.0.20210609
-- The CXX compiler identification is Intel 2021.3.0.20210609
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /opt/intel/oneapi/compiler/2021.3.0/linux/bin/intel64/icc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /opt/intel/oneapi/compiler/2021.3.0/linux/bin/intel64/icpc - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- lapack not found
-- only supporting WebViewer
-- Setting intel compiler flags
-- CPU thread manager = c++11.
-- GPU threading not enabled. GPU thread manager = serial.
-- Please install kcachegrind for graphical profiling.
-- Please install massif-visualizer for graphical heap memory usage.
-- pybind11 v2.10.0 dev1
-- Configuring done
-- Generating done
-- Build files have been written to: /home/jenkins/util/avro/build/release_intel
make -C release_intel --no-print-directory avro_lib
Consolidate compiler generated dependencies of target avro_src
[  0%] Building CXX object src/CMakeFiles/avro_src.dir/include/avro.cpp.o
In file included from /home/jenkins/util/avro/src/lib/graphics/plot.h(13),
                 from /home/jenkins/util/avro/src/lib/graphics/application.h(16),
                 from /home/jenkins/util/avro/src/include/avro.cpp(18):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[  2%] Building CXX object src/CMakeFiles/avro_src.dir/include/avro_params.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/adapt.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/cavity.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/collapses.cpp.o
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/filter.cpp.o
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/geometry.cpp.o
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/implied_metric.cpp.o
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/insertions.cpp.o
[  8%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/metric.cpp.o
[  8%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/parallel.cpp.o
In file included from /home/jenkins/util/avro/src/lib/graphics/plot.h(13),
                 from /home/jenkins/util/avro/src/lib/graphics/application.h(16),
                 from /home/jenkins/util/avro/src/lib/adaptation/parallel.cpp(21):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[  8%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/primitive.cpp.o
[  8%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/properties.cpp.o
[  8%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/smoothing.cpp.o
[ 11%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/swaps.cpp.o
[ 11%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/crypto.cpp.o
[ 11%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/error.cpp.o
[ 11%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/kdtree.cpp.o
[ 13%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/nearest_neighbours.cpp.o
[ 13%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_cpu.cpp.o
[ 13%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_gpu.cpp.o
[ 13%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_mpi.cpp.o
[ 16%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/tools.cpp.o
In file included from /home/jenkins/util/avro/src/lib/common/tools.cpp(14):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[ 16%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/basis.cpp.o
[ 16%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_line.cpp.o
[ 16%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_pentatope.cpp.o
[ 19%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_tetrahedron.cpp.o
[ 19%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_triangle.cpp.o
[ 19%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/element.cpp.o
[ 19%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_line.cpp.o
[ 19%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_nodes.cpp.o
[ 22%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_pentatope.cpp.o
[ 22%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_tetrahedron.cpp.o
[ 22%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_triangle.cpp.o
[ 22%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_line.cpp.o
[ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_pentatope.cpp.o
[ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_tetrahedron.cpp.o
[ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_triangle.cpp.o
[ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/polytope.cpp.o
[ 27%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/quadrature.cpp.o
[ 27%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/reference.cpp.o
[ 27%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/simplex.cpp.o
[ 27%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/trace2cell.cpp.o
[ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/body.cpp.o
[ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/entity.cpp.o
[ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/model.cpp.o
[ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/tessellation.cpp.o
[ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/body.cpp.o
[ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/data.cpp.o
[ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/model.cpp.o
[ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/object.cpp.o
[ 33%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/psc/facet.cpp.o
[ 33%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/psc/node.cpp.o
[ 33%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/psc/object.cpp.o
[ 33%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/application.cpp.o
In file included from /home/jenkins/util/avro/src/lib/graphics/plot.h(13),
                 from /home/jenkins/util/avro/src/lib/graphics/application.h(16),
                 from /home/jenkins/util/avro/src/lib/graphics/application.cpp(11):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[ 36%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/bsp.cpp.o
In file included from /home/jenkins/util/avro/src/lib/graphics/plot.h(13),
                 from /home/jenkins/util/avro/src/lib/graphics/bsp.h(18),
                 from /home/jenkins/util/avro/src/lib/graphics/bsp.cpp(10):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[ 36%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/camera.cpp.o
[ 36%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/colormap.cpp.o
[ 36%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/gl.cpp.o
In file included from /home/jenkins/util/avro/src/lib/graphics/gl.cpp(10):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/gui.cpp.o
In file included from /home/jenkins/util/avro/src/lib/graphics/plot.h(13),
                 from /home/jenkins/util/avro/src/lib/graphics/bsp.h(18),
                 from /home/jenkins/util/avro/src/lib/graphics/gui.cpp(10):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/math.cpp.o
[ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/opengl.cpp.o
In file included from /home/jenkins/util/avro/src/lib/graphics/plot.h(13),
                 from /home/jenkins/util/avro/src/lib/graphics/application.h(16),
                 from /home/jenkins/util/avro/src/lib/graphics/opengl.cpp(11):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/plot.cpp.o
In file included from /home/jenkins/util/avro/src/lib/graphics/plot.h(13),
                 from /home/jenkins/util/avro/src/lib/graphics/plot.cpp(12):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/postscript.cpp.o
In file included from /home/jenkins/util/avro/src/lib/graphics/plot.h(13),
                 from /home/jenkins/util/avro/src/lib/graphics/bsp.h(18),
                 from /home/jenkins/util/avro/src/lib/graphics/postscript.cpp(10):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[ 41%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/primitives.cpp.o
In file included from /home/jenkins/util/avro/src/lib/graphics/primitives.h(15),
                 from /home/jenkins/util/avro/src/lib/graphics/primitives.cpp(12):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[ 41%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/raytracer.cpp.o
In file included from /home/jenkins/util/avro/src/lib/graphics/raytracer.cpp(12):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[ 41%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/shader.cpp.o
In file included from /home/jenkins/util/avro/src/lib/graphics/shader.h(13),
                 from /home/jenkins/util/avro/src/lib/graphics/shader.cpp(12):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[ 41%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/vao.cpp.o
In file included from /home/jenkins/util/avro/src/lib/graphics/primitives.h(15),
                 from /home/jenkins/util/avro/src/lib/graphics/vao.cpp(18):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[ 44%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/vao_polytope.cpp.o
In file included from /home/jenkins/util/avro/src/lib/graphics/primitives.h(15),
                 from /home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp(15):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[ 44%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/webglpp.cpp.o
In file included from /home/jenkins/util/avro/src/lib/graphics/primitives.h(15),
                 from /home/jenkins/util/avro/src/lib/graphics/webglpp.cpp(10):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[ 44%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/websockets.cpp.o
[ 44%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/window.cpp.o
In file included from /home/jenkins/util/avro/src/lib/graphics/vao.h(15),
                 from /home/jenkins/util/avro/src/lib/graphics/window.cpp(11):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

/home/jenkins/util/avro/src/lib/graphics/window.cpp(265): warning #823: reference is to variable "d" (declared at line 261) -- under old for-init scoping rules it would have been variable "d" (declared at line 263)
      if (plot_[k]->length_scale() > d)
                                     ^

/home/jenkins/util/avro/src/lib/graphics/window.cpp(266): warning #823: reference is to variable "d" (declared at line 261) -- under old for-init scoping rules it would have been variable "d" (declared at line 263)
        d = plot_[k]->length_scale();
        ^

[ 47%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/ckf.cpp.o
[ 47%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/csm.cpp.o
[ 47%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/egads.cpp.o
[ 47%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/eps.cpp.o
[ 50%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/factory.cpp.o
[ 50%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/field.cpp.o
[ 50%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/library.cpp.o
[ 50%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/meshb.cpp.o
[ 50%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/metric.cpp.o
/home/jenkins/util/avro/src/lib/library/metric.h(245): warning #1011: missing return statement at end of non-void function "avro::library::MetricField_UniformGeometry<type>::operator()(const avro::real_t={double} *) const"
    }
    ^

[ 52%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/obj.cpp.o
[ 52%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/plots.cpp.o
[ 52%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/samples.cpp.o
[ 52%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/spacetime.cpp.o
[ 55%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/tesseract.cpp.o
[ 55%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/boundary.cpp.o
[ 55%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/builder.cpp.o
[ 55%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/decomposition.cpp.o
[ 58%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/dof.cpp.o
[ 58%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/facets.cpp.o
[ 58%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/field.cpp.o
[ 58%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/interpolation.cpp.o
[ 61%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/inverse.cpp.o
[ 61%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/mesh.cpp.o
[ 61%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/mpi.cpp.o
[ 61%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/neighbours.cpp.o
[ 61%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/partition.cpp.o
[ 63%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/points.cpp.o
[ 63%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/search.cpp.o
[ 63%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/topology.cpp.o
[ 63%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/topology_polytope.cpp.o
[ 66%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/topology_simplex.cpp.o
[ 66%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/geometry.cpp.o
[ 66%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/linear_algebra.cpp.o
/home/jenkins/util/avro/src/lib/numerics/linear_algebra.cpp(668): warning #1011: missing return statement at end of non-void function "avro::numerics::det(const avro::symd<type> &) [with type=avro::real_t={double}]"
  }
  ^
          detected during instantiation of "type avro::numerics::det(const avro::symd<type> &) [with type=avro::real_t={double}]" at line 478

[ 69%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/mat.cpp.o
[ 69%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates.cpp.o
[ 69%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/sym.cpp.o
[ 69%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/tools.cpp.o
[ 72%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/vec.cpp.o
[ 72%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/orient4d.cpp.o
[ 72%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side1_exact.cpp.o
[ 72%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side2_exact.cpp.o
[ 72%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side3_exact.cpp.o
[ 75%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side4_exact.cpp.o
[ 75%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side5_exact.cpp.o
[ 75%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_10d.cpp.o
[ 75%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_3d.cpp.o
[ 77%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_4d.cpp.o
[ 77%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_5d.cpp.o
[ 77%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_6d.cpp.o
[ 77%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_7d.cpp.o
[ 80%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_8d.cpp.o
[ 80%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_9d.cpp.o
[ 80%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/bowyer_watson.cpp.o
[ 80%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/cell.cpp.o
[ 83%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/cell_nd.cpp.o
[ 83%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/diagram.cpp.o
[ 83%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/facets.cpp.o
[ 83%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/optimal_transport.cpp.o
[ 83%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/particles.cpp.o
[ 86%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/vertex.cpp.o
[ 86%] Building CXX object src/CMakeFiles/avro_src.dir/bin/adapt.cpp.o
In file included from /home/jenkins/util/avro/src/lib/graphics/plot.h(13),
                 from /home/jenkins/util/avro/src/lib/graphics/application.h(16),
                 from /home/jenkins/util/avro/src/bin/adapt.cpp(20):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[ 86%] Building CXX object src/CMakeFiles/avro_src.dir/bin/animate.cpp.o
In file included from /home/jenkins/util/avro/src/bin/animate.cpp(6):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[ 86%] Building CXX object src/CMakeFiles/avro_src.dir/bin/arguments.cpp.o
[ 88%] Building CXX object src/CMakeFiles/avro_src.dir/bin/check.cpp.o
In file included from /home/jenkins/util/avro/src/lib/graphics/plot.h(13),
                 from /home/jenkins/util/avro/src/lib/graphics/application.h(16),
                 from /home/jenkins/util/avro/src/bin/check.cpp(10):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[ 88%] Building CXX object src/CMakeFiles/avro_src.dir/bin/conformity.cpp.o
[ 88%] Building CXX object src/CMakeFiles/avro_src.dir/bin/conformityp.cpp.o
In file included from /home/jenkins/util/avro/src/lib/graphics/plot.h(13),
                 from /home/jenkins/util/avro/src/lib/graphics/application.h(16),
                 from /home/jenkins/util/avro/src/bin/conformityp.cpp(12):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[ 88%] Building CXX object src/CMakeFiles/avro_src.dir/bin/convert.cpp.o
In file included from /home/jenkins/util/avro/src/lib/graphics/plot.h(13),
                 from /home/jenkins/util/avro/src/lib/graphics/application.h(16),
                 from /home/jenkins/util/avro/src/bin/convert.cpp(8):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[ 91%] Building CXX object src/CMakeFiles/avro_src.dir/bin/image.cpp.o
In file included from /home/jenkins/util/avro/src/lib/graphics/plot.h(13),
                 from /home/jenkins/util/avro/src/lib/graphics/application.h(16),
                 from /home/jenkins/util/avro/src/bin/image.cpp(10):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[ 91%] Building CXX object src/CMakeFiles/avro_src.dir/bin/plot.cpp.o
In file included from /home/jenkins/util/avro/src/lib/graphics/plot.h(13),
                 from /home/jenkins/util/avro/src/lib/graphics/application.h(16),
                 from /home/jenkins/util/avro/src/bin/plot.cpp(10):
/home/jenkins/util/avro/src/lib/graphics/gl.h(148): warning #1011: missing return statement at end of non-void function "avro::graphics::glGetUniformLocation"
  inline gl_index glGetUniformLocation( gl_index , const std::string& ) { avro_assert_not_reached; }
                                                                                                   ^

[ 94%] Built target avro_src
Consolidate compiler generated dependencies of target avro_third_party
[ 94%] Building C object src/third_party/CMakeFiles/avro_third_party.dir/libmeshb/libmeshb7.c.o
[ 94%] Building CXX object src/third_party/CMakeFiles/avro_third_party.dir/geogram/kd_tree.cpp.o
[ 97%] Building CXX object src/third_party/CMakeFiles/avro_third_party.dir/geogram/nn_search.cpp.o
[100%] Built target avro_third_party
[100%] Linking CXX static library ../lib/libavro.a
[100%] Built target avro_static
[100%] Linking CXX shared library ../lib/libavro.so
[100%] Built target avro_shared
[100%] Built target avro_lib
cmake analyze_clang
-- Build type = debug
-- The C compiler identification is Clang 12.0.0
-- The CXX compiler identification is Clang 12.0.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/clang - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/clang++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- lapack not found
-- only supporting WebViewer
-- Setting clang compiler flags
-- CPU thread manager = c++11.
-- GPU threading not enabled. GPU thread manager = serial.
-- Please install kcachegrind for graphical profiling.
-- Please install massif-visualizer for graphical heap memory usage.
-- pybind11 v2.10.0 dev1
-- Configuring done
-- Generating done
-- Build files have been written to: /home/jenkins/util/avro/build/analyze_clang
make -C analyze_clang --no-print-directory avro_lib
Consolidate compiler generated dependencies of target avro_src
[  0%] Building CXX object src/CMakeFiles/avro_src.dir/include/avro.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/include/avro_params.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/adapt.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/cavity.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/collapses.cpp.o
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/filter.cpp.o
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/geometry.cpp.o
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/implied_metric.cpp.o
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/insertions.cpp.o
[  8%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/metric.cpp.o
[  8%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/parallel.cpp.o
[  8%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/primitive.cpp.o
[  8%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/properties.cpp.o
[  8%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/smoothing.cpp.o
[ 11%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/swaps.cpp.o
[ 11%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/crypto.cpp.o
[ 11%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/error.cpp.o
[ 11%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/kdtree.cpp.o
[ 13%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/nearest_neighbours.cpp.o
[ 13%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_cpu.cpp.o
[ 13%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_gpu.cpp.o
[ 13%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_mpi.cpp.o
[ 16%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/tools.cpp.o
[ 16%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/basis.cpp.o
[ 16%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_line.cpp.o
[ 16%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_pentatope.cpp.o
[ 19%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_tetrahedron.cpp.o
[ 19%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_triangle.cpp.o
[ 19%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/element.cpp.o
[ 19%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_line.cpp.o
[ 19%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_nodes.cpp.o
[ 22%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_pentatope.cpp.o
[ 22%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_tetrahedron.cpp.o
[ 22%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_triangle.cpp.o
[ 22%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_line.cpp.o
/home/jenkins/util/avro/src/lib/element/legendre_line.cpp:24:10: warning: unused variable 's' [-Wunused-variable]
  real_t s = x[0];
         ^
1 warning generated.
[ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_pentatope.cpp.o
[ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_tetrahedron.cpp.o
[ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_triangle.cpp.o
[ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/polytope.cpp.o
[ 27%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/quadrature.cpp.o
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.cpp:18:
/home/jenkins/util/avro/src/lib/element/quadrature_cp.h:1065:7: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
      for (int k = 0; k < order; k++)
      ^
/home/jenkins/util/avro/src/lib/element/quadrature_cp.h:1061:5: note: previous statement is here
    for (int j = 0; j < nDim; j++)
    ^
1 warning generated.
[ 27%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/reference.cpp.o
[ 27%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/simplex.cpp.o
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convert_to_char( const std::vector<std::string>& s ) {
^
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  index_t ncolor = 256*3;
          ^
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                         ^~~~~~~~~~~~~~~~
/home/jenkins/util/avro/src/lib/graphics/opengl.cpp:480:26: note: initialize the variable 'colormap_texture' to silence this warning
  GLuint colormap_texture;
                         ^
                          = 0
/home/jenkins/util/avro/src/lib/graphics/opengl.cpp:487:25: warning: variable 'colormap_buffer' is uninitialized when used here [-Wuninitialized]
  manager_.track_buffer(colormap_buffer);
                        ^~~~~~~~~~~~~~~
/home/jenkins/util/avro/src/lib/graphics/opengl.cpp:471:27: note: initialize the variable 'colormap_buffer' to silence this warning
  gl_index colormap_buffer;
                          ^
                           = 0
3 warnings generated.
[ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/plot.cpp.o
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/home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp:139:13: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
            for (index_t j = 0; j < output.numberofpoints; j++)
            ^
/home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp:136:11: note: previous statement is here
          for (index_t j = 0; j < coordinates_.size()/3; j++)
          ^
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[ 66%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/geometry.cpp.o
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[ 80%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/bowyer_watson.cpp.o
[ 80%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/cell.cpp.o
[ 83%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/cell_nd.cpp.o
[ 83%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/diagram.cpp.o
/home/jenkins/util/avro/src/lib/voronoi/diagram.cpp:191:9: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
        add( polytope.data() , polytope.size() );
        ^
/home/jenkins/util/avro/src/lib/voronoi/diagram.cpp:189:7: note: previous statement is here
      for (index_t i = 0; i < polytope.size(); i++)
      ^
1 warning generated.
[ 83%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/facets.cpp.o
[ 83%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/optimal_transport.cpp.o
[ 83%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/particles.cpp.o
[ 86%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/vertex.cpp.o
[ 86%] Building CXX object src/CMakeFiles/avro_src.dir/bin/adapt.cpp.o
[ 86%] Building CXX object src/CMakeFiles/avro_src.dir/bin/animate.cpp.o
[ 86%] Building CXX object src/CMakeFiles/avro_src.dir/bin/arguments.cpp.o
[ 88%] Building CXX object src/CMakeFiles/avro_src.dir/bin/check.cpp.o
/home/jenkins/util/avro/src/bin/check.cpp:66:19: warning: unused variable 'topology' [-Wunused-variable]
  Topology<type>& topology = *static_cast<Topology<type>*>(ptopology.get());
                  ^
1 warning generated.
[ 88%] Building CXX object src/CMakeFiles/avro_src.dir/bin/conformity.cpp.o
[ 88%] Building CXX object src/CMakeFiles/avro_src.dir/bin/conformityp.cpp.o
[ 88%] Building CXX object src/CMakeFiles/avro_src.dir/bin/convert.cpp.o
[ 91%] Building CXX object src/CMakeFiles/avro_src.dir/bin/image.cpp.o
[ 91%] Building CXX object src/CMakeFiles/avro_src.dir/bin/plot.cpp.o
[ 94%] Built target avro_src
Consolidate compiler generated dependencies of target avro_third_party
[ 94%] Building C object src/third_party/CMakeFiles/avro_third_party.dir/libmeshb/libmeshb7.c.o
[ 94%] Building CXX object src/third_party/CMakeFiles/avro_third_party.dir/geogram/kd_tree.cpp.o
[ 97%] Building CXX object src/third_party/CMakeFiles/avro_third_party.dir/geogram/nn_search.cpp.o
[100%] Built target avro_third_party
[100%] Linking CXX static library ../lib/libavro.a
[100%] Built target avro_static
[100%] Linking CXX shared library ../lib/libavro.so
[100%] Built target avro_shared
[100%] Built target avro_lib
cmake coverage_gnu9
-- Build type = coverage
-- The C compiler identification is GNU 9.4.0
-- The CXX compiler identification is GNU 9.4.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc-9 - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++-9 - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- lapack not found
-- compiling built-in glfw3
-- Setting gnu compiler flags
-- CPU thread manager = c++11.
-- GPU threading not enabled. GPU thread manager = serial.
-- Please install kcachegrind for graphical profiling.
-- Please install massif-visualizer for graphical heap memory usage.
-- pybind11 v2.10.0 dev1
-- Using X11 for window creation
-- Configuring done
-- Generating done
-- Build files have been written to: /home/jenkins/util/avro/build/coverage_gnu9
make -C coverage_gnu9 --no-print-directory avro_lib
Consolidate compiler generated dependencies of target avro_src
[  0%] Building CXX object src/CMakeFiles/avro_src.dir/include/avro.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/include/avro_params.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/adapt.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/cavity.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/collapses.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/filter.cpp.o
/home/jenkins/util/avro/src/lib/adaptation/filter.cpp: In member function ‘void avro::Filter::generateCandidates(avro::Topology<avro::Simplex>&, avro::MetricField<avro::Simplex>&, avro::real_t, avro::Insert<avro::Simplex>&)’:
/home/jenkins/util/avro/src/lib/adaptation/filter.cpp:139:11: warning: variable ‘TIME0’ set but not used [-Wunused-but-set-variable]
  139 |   clock_t TIME0, TIME1;
      |           ^~~~~
/home/jenkins/util/avro/src/lib/adaptation/filter.cpp:139:18: warning: variable ‘TIME1’ set but not used [-Wunused-but-set-variable]
  139 |   clock_t TIME0, TIME1;
      |                  ^~~~~
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/geometry.cpp.o
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/implied_metric.cpp.o
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp: In instantiation of ‘void avro::ElementImpliedMetric<type>::compute(const std::vector<const double*>&) [with type = avro::Simplex]’:
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:638:16:   required from here
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:96:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
   96 |   J_ = J0_*Jeq_;
      |   ~~~^~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:99:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
   99 |   M_ = numerics::inverse( JJt );
      |   ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp: In instantiation of ‘void avro::ElementImpliedMetric<type>::compute(const avro::Points&, const index_t*, avro::index_t) [with type = avro::Simplex; avro::index_t = long unsigned int]’:
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:638:16:   required from here
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:110:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
  110 |   J_ = J0_*Jeq_;
      |   ~~~^~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:113:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
  113 |   M_ = numerics::inverse( JJt );
      |   ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp: In instantiation of ‘void avro::ElementImpliedMetric<type>::inverse(const avro::Points&, const index_t*, avro::index_t) [with type = avro::Simplex; avro::index_t = long unsigned int]’:
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:638:16:   required from here
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:125:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
  125 |   J_ = J0_*Jeq_;
      |   ~~~^~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:126:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
  126 |   M_ = J_*numerics::transpose(J_); // no inverse
      |   ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/insertions.cpp.o
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/metric.cpp.o
/home/jenkins/util/avro/src/lib/adaptation/metric.cpp: In instantiation of ‘avro::real_t avro::MetricField<type>::length(avro::index_t, avro::index_t) const [with type = avro::Simplex; avro::real_t = double; avro::index_t = long unsigned int]’:
/home/jenkins/util/avro/src/lib/adaptation/metric.cpp:708:16:   required from here
/home/jenkins/util/avro/src/lib/adaptation/metric.cpp:146:10: warning: variable ‘dim’ set but not used [-Wunused-but-set-variable]
  146 |  coord_t dim = topology_.points().dim();
      |          ^~~
[  7%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/parallel.cpp.o
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/home/jenkins/util/avro/src/lib/element/legendre_line.cpp: In static member function ‘static void avro::Legendre<avro::Simplex, N, P>::eval(const double*, double*) [with int N = 1; int P = 0]’:
/home/jenkins/util/avro/src/lib/element/legendre_line.cpp:24:10: warning: unused variable ‘s’ [-Wunused-variable]
   24 |   real_t s = x[0];
      |          ^
[ 20%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_pentatope.cpp.o
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[ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/quadrature.cpp.o
/home/jenkins/util/avro/src/lib/element/quadrature.cpp: In instantiation of ‘void avro::QuadratureStore<type>::build() [with type = avro::Simplex]’:
/home/jenkins/util/avro/src/lib/element/quadrature.cpp:38:3:   required from ‘avro::QuadratureStore<type>::QuadratureStore(avro::BasisFunctionCategory) [with type = avro::Simplex]’
/home/jenkins/util/avro/src/lib/element/quadrature.cpp:26:83:   required from here
/home/jenkins/util/avro/src/lib/element/quadrature.cpp:93:16: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
   93 |           B[d] = matd<real_t>( nb_basis , quad.nb() );
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/quadrature.cpp:14:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/element/quadrature.cpp:114:16: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
  114 |           B[d] = Ainv*B[d]; // convert modal basis to nodal basis
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/quadrature.cpp:14:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
[ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/reference.cpp.o
[ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/simplex.cpp.o
/home/jenkins/util/avro/src/lib/element/simplex.cpp: In member function ‘void avro::Simplex::precalculate()’:
/home/jenkins/util/avro/src/lib/element/simplex.cpp:120:25: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  120 |   for (index_t k = 0; k < number_+1; k++)
      |                       ~~^~~~~~~~~~~
[ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/trace2cell.cpp.o
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/home/jenkins/util/avro/src/lib/graphics/raytracer.cpp: In member function ‘void avro::graphics::Canvas::convert()’:
/home/jenkins/util/avro/src/lib/graphics/raytracer.cpp:97:25: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   97 |   for (index_t i = 0; i < height_; i++)
      |                       ~~^~~~~~~~~
/home/jenkins/util/avro/src/lib/graphics/raytracer.cpp:98:25: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   98 |   for (index_t j = 0; j < width_; j++)
      |                       ~~^~~~~~~~
/home/jenkins/util/avro/src/lib/graphics/raytracer.cpp: In member function ‘void avro::graphics::RayTracer::render()’:
/home/jenkins/util/avro/src/lib/graphics/raytracer.cpp:435:27: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  435 |     for (index_t j = 0; j < canvas_.width(); j++) {
      |                         ~~^~~~~~~~~~~~~~~~~
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/home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp: In member function ‘void avro::graphics::PolytopeDecomposition::triangulate()’:
/home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp:136:11: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  136 |           for (index_t j = 0; j < coordinates_.size()/3; j++)
      |           ^~~
/home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp:139:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  139 |             for (index_t j = 0; j < output.numberofpoints; j++)
      |             ^~~
/home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp:139:35: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  139 |             for (index_t j = 0; j < output.numberofpoints; j++)
      |                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
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/home/jenkins/util/avro/src/lib/voronoi/diagram.cpp: In member function ‘void avro::voronoi::PowerDiagram::add_cell(const avro::voronoi::Cell&, bool)’:
/home/jenkins/util/avro/src/lib/voronoi/diagram.cpp:189:7: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  189 |       for (index_t i = 0; i < polytope.size(); i++)
      |       ^~~
/home/jenkins/util/avro/src/lib/voronoi/diagram.cpp:191:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  191 |         add( polytope.data() , polytope.size() );
      |         ^~~
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/home/jenkins/util/avro/src/bin/animate.cpp: In function ‘int avro::programs::animate(int, const char**)’:
/home/jenkins/util/avro/src/bin/animate.cpp:140:8: warning: variable ‘found’ set but not used [-Wunused-but-set-variable]
  140 |   bool found = false;
      |        ^~~~~
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/home/jenkins/util/avro/src/bin/check.cpp: In function ‘int avro::programs::check(int, const char**)’:
/home/jenkins/util/avro/src/bin/check.cpp:66:19: warning: unused variable ‘topology’ [-Wunused-variable]
   66 |   Topology<type>& topology = *static_cast<Topology<type>*>(ptopology.get());
      |                   ^~~~~~~~
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cmake memcheck_gnu9
-- Build type = memcheck
-- The C compiler identification is GNU 9.4.0
-- The CXX compiler identification is GNU 9.4.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
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-- Detecting C compile features
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-- Detecting CXX compile features - done
-- lapack not found
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-- Setting gnu compiler flags
-- CPU thread manager = c++11.
-- GPU threading not enabled. GPU thread manager = serial.
-- Please install kcachegrind for graphical profiling.
-- Please install massif-visualizer for graphical heap memory usage.
-- pybind11 v2.10.0 dev1
-- Using X11 for window creation
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-- Build files have been written to: /home/jenkins/util/avro/build/memcheck_gnu9
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[  2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/collapses.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/filter.cpp.o
/home/jenkins/util/avro/src/lib/adaptation/filter.cpp: In member function ‘void avro::Filter::generateCandidates(avro::Topology<avro::Simplex>&, avro::MetricField<avro::Simplex>&, avro::real_t, avro::Insert<avro::Simplex>&)’:
/home/jenkins/util/avro/src/lib/adaptation/filter.cpp:139:11: warning: variable ‘TIME0’ set but not used [-Wunused-but-set-variable]
  139 |   clock_t TIME0, TIME1;
      |           ^~~~~
/home/jenkins/util/avro/src/lib/adaptation/filter.cpp:139:18: warning: variable ‘TIME1’ set but not used [-Wunused-but-set-variable]
  139 |   clock_t TIME0, TIME1;
      |                  ^~~~~
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/geometry.cpp.o
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/implied_metric.cpp.o
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp: In instantiation of ‘void avro::ElementImpliedMetric<type>::compute(const std::vector<const double*>&) [with type = avro::Simplex]’:
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:638:16:   required from here
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:96:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
   96 |   J_ = J0_*Jeq_;
      |   ~~~^~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:99:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
   99 |   M_ = numerics::inverse( JJt );
      |   ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp: In instantiation of ‘void avro::ElementImpliedMetric<type>::compute(const avro::Points&, const index_t*, avro::index_t) [with type = avro::Simplex; avro::index_t = long unsigned int]’:
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:638:16:   required from here
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:110:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
  110 |   J_ = J0_*Jeq_;
      |   ~~~^~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:113:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
  113 |   M_ = numerics::inverse( JJt );
      |   ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp: In instantiation of ‘void avro::ElementImpliedMetric<type>::inverse(const avro::Points&, const index_t*, avro::index_t) [with type = avro::Simplex; avro::index_t = long unsigned int]’:
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:638:16:   required from here
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:125:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
  125 |   J_ = J0_*Jeq_;
      |   ~~~^~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:126:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
  126 |   M_ = J_*numerics::transpose(J_); // no inverse
      |   ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/insertions.cpp.o
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/metric.cpp.o
/home/jenkins/util/avro/src/lib/adaptation/metric.cpp: In instantiation of ‘avro::real_t avro::MetricField<type>::length(avro::index_t, avro::index_t) const [with type = avro::Simplex; avro::real_t = double; avro::index_t = long unsigned int]’:
/home/jenkins/util/avro/src/lib/adaptation/metric.cpp:708:16:   required from here
/home/jenkins/util/avro/src/lib/adaptation/metric.cpp:146:10: warning: variable ‘dim’ set but not used [-Wunused-but-set-variable]
  146 |  coord_t dim = topology_.points().dim();
      |          ^~~
[  7%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/parallel.cpp.o
[  7%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/primitive.cpp.o
[  7%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/properties.cpp.o
[  7%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/smoothing.cpp.o
[  7%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/swaps.cpp.o
[ 10%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/crypto.cpp.o
[ 10%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/error.cpp.o
[ 10%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/kdtree.cpp.o
[ 10%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/nearest_neighbours.cpp.o
[ 12%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_cpu.cpp.o
[ 12%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_gpu.cpp.o
[ 12%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_mpi.cpp.o
[ 12%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/tools.cpp.o
[ 12%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/basis.cpp.o
[ 15%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_line.cpp.o
[ 15%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_pentatope.cpp.o
[ 15%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_tetrahedron.cpp.o
[ 15%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_triangle.cpp.o
[ 17%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/element.cpp.o
[ 17%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_line.cpp.o
[ 17%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_nodes.cpp.o
[ 17%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_pentatope.cpp.o
[ 17%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_tetrahedron.cpp.o
[ 20%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_triangle.cpp.o
[ 20%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_line.cpp.o
/home/jenkins/util/avro/src/lib/element/legendre_line.cpp: In static member function ‘static void avro::Legendre<avro::Simplex, N, P>::eval(const double*, double*) [with int N = 1; int P = 0]’:
/home/jenkins/util/avro/src/lib/element/legendre_line.cpp:24:10: warning: unused variable ‘s’ [-Wunused-variable]
   24 |   real_t s = x[0];
      |          ^
[ 20%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_pentatope.cpp.o
[ 20%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_tetrahedron.cpp.o
[ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_triangle.cpp.o
[ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/polytope.cpp.o
[ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/quadrature.cpp.o
/home/jenkins/util/avro/src/lib/element/quadrature.cpp: In instantiation of ‘void avro::QuadratureStore<type>::build() [with type = avro::Simplex]’:
/home/jenkins/util/avro/src/lib/element/quadrature.cpp:38:3:   required from ‘avro::QuadratureStore<type>::QuadratureStore(avro::BasisFunctionCategory) [with type = avro::Simplex]’
/home/jenkins/util/avro/src/lib/element/quadrature.cpp:26:83:   required from here
/home/jenkins/util/avro/src/lib/element/quadrature.cpp:93:16: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
   93 |           B[d] = matd<real_t>( nb_basis , quad.nb() );
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/quadrature.cpp:14:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/element/quadrature.cpp:114:16: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
  114 |           B[d] = Ainv*B[d]; // convert modal basis to nodal basis
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/quadrature.cpp:14:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
[ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/reference.cpp.o
[ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/simplex.cpp.o
/home/jenkins/util/avro/src/lib/element/simplex.cpp: In member function ‘void avro::Simplex::precalculate()’:
/home/jenkins/util/avro/src/lib/element/simplex.cpp:120:25: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  120 |   for (index_t k = 0; k < number_+1; k++)
      |                       ~~^~~~~~~~~~~
[ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/trace2cell.cpp.o
[ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/body.cpp.o
[ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/entity.cpp.o
[ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/model.cpp.o
[ 28%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/tessellation.cpp.o
[ 28%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/body.cpp.o
[ 28%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/data.cpp.o
[ 28%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/model.cpp.o
[ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/egads/object.cpp.o
[ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/psc/facet.cpp.o
[ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/psc/node.cpp.o
[ 30%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/psc/object.cpp.o
[ 33%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/application.cpp.o
[ 33%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/bsp.cpp.o
[ 33%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/camera.cpp.o
[ 33%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/colormap.cpp.o
[ 33%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/gl.cpp.o
[ 35%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/gui.cpp.o
[ 35%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/math.cpp.o
[ 35%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/opengl.cpp.o
[ 35%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/plot.cpp.o
[ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/postscript.cpp.o
[ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/primitives.cpp.o
[ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/raytracer.cpp.o
/home/jenkins/util/avro/src/lib/graphics/raytracer.cpp: In member function ‘void avro::graphics::Canvas::convert()’:
/home/jenkins/util/avro/src/lib/graphics/raytracer.cpp:97:25: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   97 |   for (index_t i = 0; i < height_; i++)
      |                       ~~^~~~~~~~~
/home/jenkins/util/avro/src/lib/graphics/raytracer.cpp:98:25: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   98 |   for (index_t j = 0; j < width_; j++)
      |                       ~~^~~~~~~~
/home/jenkins/util/avro/src/lib/graphics/raytracer.cpp: In member function ‘void avro::graphics::RayTracer::render()’:
/home/jenkins/util/avro/src/lib/graphics/raytracer.cpp:435:27: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  435 |     for (index_t j = 0; j < canvas_.width(); j++) {
      |                         ~~^~~~~~~~~~~~~~~~~
[ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/shader.cpp.o
[ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/vao.cpp.o
[ 41%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/vao_polytope.cpp.o
/home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp: In member function ‘void avro::graphics::PolytopeDecomposition::triangulate()’:
/home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp:136:11: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  136 |           for (index_t j = 0; j < coordinates_.size()/3; j++)
      |           ^~~
/home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp:139:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  139 |             for (index_t j = 0; j < output.numberofpoints; j++)
      |             ^~~
/home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp:139:35: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  139 |             for (index_t j = 0; j < output.numberofpoints; j++)
      |                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
[ 41%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/webglpp.cpp.o
[ 41%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/websockets.cpp.o
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[ 43%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/factory.cpp.o
[ 46%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/field.cpp.o
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[ 46%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/meshb.cpp.o
[ 46%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/metric.cpp.o
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/home/jenkins/util/avro/src/lib/numerics/sym.cpp: In member function ‘avro::symd<T> avro::symd<T>::sandwich(const avro::symd<T>&) const [with type = SurrealS<3>]’:
/home/jenkins/util/avro/src/lib/numerics/sym.cpp:94:1: note: variable tracking size limit exceeded with ‘-fvar-tracking-assignments’, retrying without
   94 | symd<type>::sandwich( const symd<type>& B ) const {
      | ^~~~~~~~~~
/home/jenkins/util/avro/src/lib/numerics/sym.cpp: In member function ‘avro::symd<T> avro::symd<T>::sandwich(const avro::symd<T>&) const [with type = SurrealS<6>]’:
/home/jenkins/util/avro/src/lib/numerics/sym.cpp:94:1: note: variable tracking size limit exceeded with ‘-fvar-tracking-assignments’, retrying without
/home/jenkins/util/avro/src/lib/numerics/sym.cpp: In member function ‘avro::symd<T> avro::symd<T>::sandwich(const avro::symd<T>&) const [with type = SurrealS<10>]’:
/home/jenkins/util/avro/src/lib/numerics/sym.cpp:94:1: note: variable tracking size limit exceeded with ‘-fvar-tracking-assignments’, retrying without
[ 64%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/tools.cpp.o
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[ 71%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/bowyer_watson.cpp.o
[ 74%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/cell.cpp.o
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[ 74%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/diagram.cpp.o
/home/jenkins/util/avro/src/lib/voronoi/diagram.cpp: In member function ‘void avro::voronoi::PowerDiagram::add_cell(const avro::voronoi::Cell&, bool)’:
/home/jenkins/util/avro/src/lib/voronoi/diagram.cpp:189:7: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  189 |       for (index_t i = 0; i < polytope.size(); i++)
      |       ^~~
/home/jenkins/util/avro/src/lib/voronoi/diagram.cpp:191:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  191 |         add( polytope.data() , polytope.size() );
      |         ^~~
[ 74%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/facets.cpp.o
[ 74%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/optimal_transport.cpp.o
[ 76%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/particles.cpp.o
[ 76%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/vertex.cpp.o
[ 76%] Building CXX object src/CMakeFiles/avro_src.dir/bin/adapt.cpp.o
[ 76%] Building CXX object src/CMakeFiles/avro_src.dir/bin/animate.cpp.o
/home/jenkins/util/avro/src/bin/animate.cpp: In function ‘int avro::programs::animate(int, const char**)’:
/home/jenkins/util/avro/src/bin/animate.cpp:140:8: warning: variable ‘found’ set but not used [-Wunused-but-set-variable]
  140 |   bool found = false;
      |        ^~~~~
[ 79%] Building CXX object src/CMakeFiles/avro_src.dir/bin/arguments.cpp.o
[ 79%] Building CXX object src/CMakeFiles/avro_src.dir/bin/check.cpp.o
/home/jenkins/util/avro/src/bin/check.cpp: In function ‘int avro::programs::check(int, const char**)’:
/home/jenkins/util/avro/src/bin/check.cpp:66:19: warning: unused variable ‘topology’ [-Wunused-variable]
   66 |   Topology<type>& topology = *static_cast<Topology<type>*>(ptopology.get());
      |                   ^~~~~~~~
[ 79%] Building CXX object src/CMakeFiles/avro_src.dir/bin/conformity.cpp.o
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[ 82%] Building CXX object src/CMakeFiles/avro_src.dir/bin/image.cpp.o
[ 82%] Building CXX object src/CMakeFiles/avro_src.dir/bin/plot.cpp.o
[ 82%] Built target avro_src
Consolidate compiler generated dependencies of target avro_third_party
[ 82%] Building C object src/third_party/CMakeFiles/avro_third_party.dir/libmeshb/libmeshb7.c.o
[ 82%] Building CXX object src/third_party/CMakeFiles/avro_third_party.dir/imgui/imgui.cpp.o
[ 84%] Building CXX object src/third_party/CMakeFiles/avro_third_party.dir/imgui/imgui_demo.cpp.o
[ 84%] Building CXX object src/third_party/CMakeFiles/avro_third_party.dir/imgui/imgui_draw.cpp.o
[ 84%] Building CXX object src/third_party/CMakeFiles/avro_third_party.dir/imgui/imgui_widgets.cpp.o
[ 84%] Building CXX object src/third_party/CMakeFiles/avro_third_party.dir/geogram/kd_tree.cpp.o
[ 84%] Building CXX object src/third_party/CMakeFiles/avro_third_party.dir/geogram/nn_search.cpp.o
[ 89%] Built target avro_third_party
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[ 89%] Building C object src/third_party/glfw/src/CMakeFiles/glfw.dir/context.c.o
[ 92%] Building C object src/third_party/glfw/src/CMakeFiles/glfw.dir/init.c.o
[ 92%] Building C object src/third_party/glfw/src/CMakeFiles/glfw.dir/input.c.o
[ 92%] Building C object src/third_party/glfw/src/CMakeFiles/glfw.dir/monitor.c.o
[ 92%] Building C object src/third_party/glfw/src/CMakeFiles/glfw.dir/vulkan.c.o
[ 94%] Building C object src/third_party/glfw/src/CMakeFiles/glfw.dir/window.c.o
[ 94%] Building C object src/third_party/glfw/src/CMakeFiles/glfw.dir/x11_init.c.o
[ 94%] Building C object src/third_party/glfw/src/CMakeFiles/glfw.dir/x11_monitor.c.o
[ 94%] Building C object src/third_party/glfw/src/CMakeFiles/glfw.dir/x11_window.c.o
[ 94%] Building C object src/third_party/glfw/src/CMakeFiles/glfw.dir/xkb_unicode.c.o
[ 97%] Building C object src/third_party/glfw/src/CMakeFiles/glfw.dir/posix_time.c.o
[ 97%] Building C object src/third_party/glfw/src/CMakeFiles/glfw.dir/posix_thread.c.o
[ 97%] Building C object src/third_party/glfw/src/CMakeFiles/glfw.dir/glx_context.c.o
[ 97%] Building C object src/third_party/glfw/src/CMakeFiles/glfw.dir/egl_context.c.o
[100%] Building C object src/third_party/glfw/src/CMakeFiles/glfw.dir/osmesa_context.c.o
[100%] Building C object src/third_party/glfw/src/CMakeFiles/glfw.dir/linux_joystick.c.o
[100%] Linking C static library ../../../../lib/libglfw3.a
[100%] Built target glfw
[100%] Linking CXX static library ../lib/libavro.a
[100%] Built target avro_static
[100%] Linking CXX shared library ../lib/libavro.so
[100%] Built target avro_shared
[100%] Built target avro_lib
cmake undefined_gnu9
-- Build type = debug
-- The C compiler identification is GNU 9.4.0
-- The CXX compiler identification is GNU 9.4.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc-9 - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++-9 - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- lapack not found
-- compiling built-in glfw3
-- Setting gnu compiler flags
-- CPU thread manager = c++11.
-- GPU threading not enabled. GPU thread manager = serial.
-- Please install kcachegrind for graphical profiling.
-- Please install massif-visualizer for graphical heap memory usage.
-- pybind11 v2.10.0 dev1
-- Using X11 for window creation
-- Configuring done
-- Generating done
-- Build files have been written to: /home/jenkins/util/avro/build/undefined_gnu9
make -C undefined_gnu9 --no-print-directory avro_lib
Consolidate compiler generated dependencies of target avro_src
[  0%] Building CXX object src/CMakeFiles/avro_src.dir/include/avro.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/include/avro_params.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/adapt.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/cavity.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/collapses.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/filter.cpp.o
/home/jenkins/util/avro/src/lib/adaptation/filter.cpp: In member function ‘void avro::Filter::generateCandidates(avro::Topology<avro::Simplex>&, avro::MetricField<avro::Simplex>&, avro::real_t, avro::Insert<avro::Simplex>&)’:
/home/jenkins/util/avro/src/lib/adaptation/filter.cpp:139:11: warning: variable ‘TIME0’ set but not used [-Wunused-but-set-variable]
  139 |   clock_t TIME0, TIME1;
      |           ^~~~~
/home/jenkins/util/avro/src/lib/adaptation/filter.cpp:139:18: warning: variable ‘TIME1’ set but not used [-Wunused-but-set-variable]
  139 |   clock_t TIME0, TIME1;
      |                  ^~~~~
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/geometry.cpp.o
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/implied_metric.cpp.o
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp: In instantiation of ‘void avro::ElementImpliedMetric<type>::compute(const std::vector<const double*>&) [with type = avro::Simplex]’:
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:638:16:   required from here
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:96:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
   96 |   J_ = J0_*Jeq_;
      |   ~~~^~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:99:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
   99 |   M_ = numerics::inverse( JJt );
      |   ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp: In instantiation of ‘void avro::ElementImpliedMetric<type>::compute(const avro::Points&, const index_t*, avro::index_t) [with type = avro::Simplex; avro::index_t = long unsigned int]’:
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:638:16:   required from here
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:110:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
  110 |   J_ = J0_*Jeq_;
      |   ~~~^~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:113:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
  113 |   M_ = numerics::inverse( JJt );
      |   ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp: In instantiation of ‘void avro::ElementImpliedMetric<type>::inverse(const avro::Points&, const index_t*, avro::index_t) [with type = avro::Simplex; avro::index_t = long unsigned int]’:
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:638:16:   required from here
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:125:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
  125 |   J_ = J0_*Jeq_;
      |   ~~~^~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:126:6: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
  126 |   M_ = J_*numerics::transpose(J_); // no inverse
      |   ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/simplex.h:19,
                 from /home/jenkins/util/avro/src/lib/element/polytope.h:16,
                 from /home/jenkins/util/avro/src/lib/mesh/field.h:18,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.h:16,
                 from /home/jenkins/util/avro/src/lib/adaptation/implied_metric.cpp:10:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/insertions.cpp.o
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/metric.cpp.o
/home/jenkins/util/avro/src/lib/adaptation/metric.cpp: In instantiation of ‘avro::real_t avro::MetricField<type>::length(avro::index_t, avro::index_t) const [with type = avro::Simplex; avro::real_t = double; avro::index_t = long unsigned int]’:
/home/jenkins/util/avro/src/lib/adaptation/metric.cpp:708:16:   required from here
/home/jenkins/util/avro/src/lib/adaptation/metric.cpp:146:10: warning: variable ‘dim’ set but not used [-Wunused-but-set-variable]
  146 |  coord_t dim = topology_.points().dim();
      |          ^~~
[  7%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/parallel.cpp.o
[  7%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/primitive.cpp.o
[  7%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/properties.cpp.o
[  7%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/smoothing.cpp.o
[  7%] Building CXX object src/CMakeFiles/avro_src.dir/lib/adaptation/swaps.cpp.o
[ 10%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/crypto.cpp.o
[ 10%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/error.cpp.o
[ 10%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/kdtree.cpp.o
[ 10%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/nearest_neighbours.cpp.o
[ 12%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_cpu.cpp.o
[ 12%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_gpu.cpp.o
[ 12%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_mpi.cpp.o
[ 12%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/tools.cpp.o
[ 12%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/basis.cpp.o
[ 15%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_line.cpp.o
[ 15%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_pentatope.cpp.o
[ 15%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_tetrahedron.cpp.o
[ 15%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/bernstein_triangle.cpp.o
[ 17%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/element.cpp.o
[ 17%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_line.cpp.o
[ 17%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_nodes.cpp.o
[ 17%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/lagrange_pentatope.cpp.o
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[ 20%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_line.cpp.o
/home/jenkins/util/avro/src/lib/element/legendre_line.cpp: In static member function ‘static void avro::Legendre<avro::Simplex, N, P>::eval(const double*, double*) [with int N = 1; int P = 0]’:
/home/jenkins/util/avro/src/lib/element/legendre_line.cpp:24:10: warning: unused variable ‘s’ [-Wunused-variable]
   24 |   real_t s = x[0];
      |          ^
[ 20%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_pentatope.cpp.o
[ 20%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_tetrahedron.cpp.o
[ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/legendre_triangle.cpp.o
[ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/polytope.cpp.o
[ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/quadrature.cpp.o
/home/jenkins/util/avro/src/lib/element/quadrature.cpp: In instantiation of ‘void avro::QuadratureStore<type>::build() [with type = avro::Simplex]’:
/home/jenkins/util/avro/src/lib/element/quadrature.cpp:38:3:   required from ‘avro::QuadratureStore<type>::QuadratureStore(avro::BasisFunctionCategory) [with type = avro::Simplex]’
/home/jenkins/util/avro/src/lib/element/quadrature.cpp:26:83:   required from here
/home/jenkins/util/avro/src/lib/element/quadrature.cpp:93:16: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
   93 |           B[d] = matd<real_t>( nb_basis , quad.nb() );
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/quadrature.cpp:14:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
/home/jenkins/util/avro/src/lib/element/quadrature.cpp:114:16: warning: implicitly-declared ‘avro::matd<double>& avro::matd<double>::operator=(const avro::matd<double>&)’ is deprecated [-Wdeprecated-copy]
  114 |           B[d] = Ainv*B[d]; // convert modal basis to nodal basis
In file included from /home/jenkins/util/avro/src/lib/element/quadrature.h:16,
                 from /home/jenkins/util/avro/src/lib/element/quadrature.cpp:14:
/home/jenkins/util/avro/src/lib/numerics/mat.h:47:3: note: because ‘avro::matd<double>’ has user-provided ‘avro::matd<T>::matd(const avro::matd<T>&) [with T = double]’
   47 |   matd(const matd& A) :
      |   ^~~~
[ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/reference.cpp.o
[ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/simplex.cpp.o
/home/jenkins/util/avro/src/lib/element/simplex.cpp: In member function ‘void avro::Simplex::precalculate()’:
/home/jenkins/util/avro/src/lib/element/simplex.cpp:120:25: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  120 |   for (index_t k = 0; k < number_+1; k++)
      |                       ~~^~~~~~~~~~~
[ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/element/trace2cell.cpp.o
[ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/body.cpp.o
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[ 33%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/application.cpp.o
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[ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/raytracer.cpp.o
/home/jenkins/util/avro/src/lib/graphics/raytracer.cpp: In member function ‘void avro::graphics::Canvas::convert()’:
/home/jenkins/util/avro/src/lib/graphics/raytracer.cpp:97:25: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   97 |   for (index_t i = 0; i < height_; i++)
      |                       ~~^~~~~~~~~
/home/jenkins/util/avro/src/lib/graphics/raytracer.cpp:98:25: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   98 |   for (index_t j = 0; j < width_; j++)
      |                       ~~^~~~~~~~
/home/jenkins/util/avro/src/lib/graphics/raytracer.cpp: In member function ‘void avro::graphics::RayTracer::render()’:
/home/jenkins/util/avro/src/lib/graphics/raytracer.cpp:435:27: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  435 |     for (index_t j = 0; j < canvas_.width(); j++) {
      |                         ~~^~~~~~~~~~~~~~~~~
[ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/shader.cpp.o
[ 38%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/vao.cpp.o
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/home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp: In member function ‘void avro::graphics::PolytopeDecomposition::triangulate()’:
/home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp:136:11: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  136 |           for (index_t j = 0; j < coordinates_.size()/3; j++)
      |           ^~~
/home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp:139:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  139 |             for (index_t j = 0; j < output.numberofpoints; j++)
      |             ^~~
/home/jenkins/util/avro/src/lib/graphics/vao_polytope.cpp:139:35: warning: comparison of integer expressions of different signedness: ‘avro::index_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  139 |             for (index_t j = 0; j < output.numberofpoints; j++)
      |                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
[ 41%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/webglpp.cpp.o
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[ 74%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/diagram.cpp.o
/home/jenkins/util/avro/src/lib/voronoi/diagram.cpp: In member function ‘void avro::voronoi::PowerDiagram::add_cell(const avro::voronoi::Cell&, bool)’:
/home/jenkins/util/avro/src/lib/voronoi/diagram.cpp:189:7: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  189 |       for (index_t i = 0; i < polytope.size(); i++)
      |       ^~~
/home/jenkins/util/avro/src/lib/voronoi/diagram.cpp:191:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  191 |         add( polytope.data() , polytope.size() );
      |         ^~~
[ 74%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/facets.cpp.o
[ 74%] Building CXX object src/CMakeFiles/avro_src.dir/lib/voronoi/optimal_transport.cpp.o
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[ 76%] Building CXX object src/CMakeFiles/avro_src.dir/bin/adapt.cpp.o
[ 76%] Building CXX object src/CMakeFiles/avro_src.dir/bin/animate.cpp.o
/home/jenkins/util/avro/src/bin/animate.cpp: In function ‘int avro::programs::animate(int, const char**)’:
/home/jenkins/util/avro/src/bin/animate.cpp:140:8: warning: variable ‘found’ set but not used [-Wunused-but-set-variable]
  140 |   bool found = false;
      |        ^~~~~
[ 79%] Building CXX object src/CMakeFiles/avro_src.dir/bin/arguments.cpp.o
[ 79%] Building CXX object src/CMakeFiles/avro_src.dir/bin/check.cpp.o
/home/jenkins/util/avro/src/bin/check.cpp: In function ‘int avro::programs::check(int, const char**)’:
/home/jenkins/util/avro/src/bin/check.cpp:66:19: warning: unused variable ‘topology’ [-Wunused-variable]
   66 |   Topology<type>& topology = *static_cast<Topology<type>*>(ptopology.get());
      |                   ^~~~~~~~
[ 79%] Building CXX object src/CMakeFiles/avro_src.dir/bin/conformity.cpp.o
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[100%] Building C object src/third_party/glfw/src/CMakeFiles/glfw.dir/linux_joystick.c.o
[100%] Linking C static library ../../../../lib/libglfw3.a
[100%] Built target glfw
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[100%] Built target avro_static
[100%] Linking CXX shared library ../lib/libavro.so
[100%] Built target avro_shared
[100%] Built target avro_lib
[Static Analysis] Reference build recorder is not configured
[Static Analysis] Obtaining reference build from same job (SANS_avro)
[Static Analysis] Using reference build 'SANS_avro #72' to compute new, fixed, and outstanding issues
[Static Analysis] Issues delta (vs. reference build): outstanding: 0, new: 0, fixed: 0
[Static Analysis] Evaluating quality gates
[Static Analysis] -> PASSED - Total (any severity): 0 - Quality QualityGate: 1
[Static Analysis] -> All quality gates have been passed
[Static Analysis] Health report is disabled - skipping
[Static Analysis] Created analysis result for 0 issues (found 0 new issues, fixed 0 issues)
[Static Analysis] Attaching ResultAction with ID 'analysis' to build 'SANS_avro #73'.
[Checks API] No suitable checks publisher found.
Finished: SUCCESS