Started by user galbramc Running as galbramc [EnvInject] - Loading node environment variables. Building remotely on reynolds in workspace /jenkins/workspace/SANS_refine [WS-CLEANUP] Deleting project workspace... The recommended git tool is: NONE using credential 3614a4cf-01de-4393-97de-73734b7dd5a2 Cloning the remote Git repository > JGit fetch # timeout=10 Verifying host key for acdl.mit.edu using /home/jenkins/.ssh/known_hosts remote: Enumerating objects remote: Counting objects remote: Compressing objects Receiving objects Resolving deltas Avoid second fetch Checking out Revision cb909d3d1882a750633cc9953c4f5bac4528eac9 (acdl/develop) Commit message: "Merge branch 'galbramc/develop' of ssh://acdl.mit.edu/home/svnroot/SANSproto into galbramc/develop" The recommended git tool is: NONE using credential 3614a4cf-01de-4393-97de-73734b7dd5a2 The recommended git tool is: NONE using credential 3614a4cf-01de-4393-97de-73734b7dd5a2 [GitCheckoutListener] Recording commits of 'git ssh://jenkins@acdl.mit.edu/home/svnroot/SANSproto/' [GitCheckoutListener] Found previous build 'SANS_refine #121' that contains recorded Git commits [GitCheckoutListener] -> Starting recording of new commits since '7703a5c' [GitCheckoutListener] -> Multiple parent commits found - storing latest commit of local merge 'cb909d3' [GitCheckoutListener] -> Using parent commit '16973e9' of local merge as starting point [GitCheckoutListener] -> Storing target branch head '2c27606' (second parent of local merge) [GitCheckoutListener] -> Recorded 40 new commits [GitCheckoutListener] -> The latest commit 'cb909d3d1882a750633cc9953c4f5bac4528eac9' is a merge commit [GitCheckoutListener] -> Git commit decorator could not be created for SCM 'hudson.plugins.git.GitSCM@3c188cd8' No emails were triggered. Triggering SANS_refine » release_intel,reynolds Triggering SANS_refine » release_gnu10,reynolds Triggering SANS_refine » release_clang,reynolds Triggering SANS_refine » release_gnu9,reynolds Triggering SANS_refine » release_gnu11,reynolds SANS_refine » release_intel,reynolds completed with result FAILURE SANS_refine » release_gnu10,reynolds completed with result SUCCESS SANS_refine » release_clang,reynolds completed with result SUCCESS SANS_refine » release_gnu9,reynolds completed with result SUCCESS SANS_refine » release_gnu11,reynolds completed with result SUCCESS Email was triggered for: Failure - Any Sending email for trigger: Failure - Any Failed to create e-mail address for SANS_refine
BUILD FAILURE
Build URL https://acdl.mit.edu/csi/job/SANS_refine/122/
Project: SANS_refine
Date of build: Thu, 06 Oct 2022 06:19:54 -0400
Build duration: 41 min and counting
Build cause: Started by user galbramc
Built on: reynolds

Changes

Added system tests for solver interfaces

by cwomack

edit test/system/Adaptation/CMakeLists.txt
add test/system/IO/Adaptation/SolverInterface_DGBR2_Fulltest.txt
edit test/system/Adaptation/SolverInterface_Galerkin_Stabilized_btest.cpp
add test/system/Adaptation/SolverInterface_VMSD_btest.cpp
add test/system/IO/Adaptation/SolverInterface_DGAdvective_Mintest.txt
edit src/Adaptation/MOESS/SolverInterface_DGAdvective.h
edit src/Adaptation/MOESS/SolverInterface_DGBR2.h
add test/system/IO/Adaptation/SolverInterface_Galerkin_Mintest.txt
add test/system/IO/Adaptation/SolverInterface_VMSD_Fulltest.txt
add test/system/IO/Adaptation/SolverInterface_Galerkin_Stabilized_Mintest.txt
add test/system/IO/Adaptation/SolverInterface_VMSDBR2_Mintest.txt
add test/system/IO/Adaptation/SolverInterface_Galerkin_Stabilized_Fulltest.txt
add test/system/Adaptation/SolverInterface_VMSDBR2_btest.cpp
add test/system/IO/Adaptation/SolverInterface_VMSDBR2_Fulltest.txt
add test/system/IO/Adaptation/SolverInterface_DGAdvective_Fulltest.txt
edit test/system/Adaptation/SolverInterface_DGAdvective_btest.cpp
add test/system/IO/Adaptation/SolverInterface_Galerkin_Fulltest.txt
add test/system/IO/Adaptation/SolverInterface_DGBR2_Mintest.txt
edit test/system/Adaptation/SolverInterface_DGBR2_btest.cpp
edit src/Adaptation/MOESS/SolverInterface_VMSD.h
add test/system/Adaptation/SolverInterface_Galerkin_btest.cpp
add test/system/IO/Adaptation/SolverInterface_VMSD_Mintest.txt

Fixed errors

by cwomack

edit test/system/Adaptation/SolverInterface_Galerkin_btest.cpp
edit test/system/Adaptation/SolverInterface_DGBR2_btest.cpp
edit test/system/Adaptation/SolverInterface_DGAdvective_btest.cpp

Fixed errors (should',ve been in last commit)

by cwomack

edit src/Adaptation/MOESS/SolverInterface_DGAdvective.h

Fixed link errors

by cwomack

edit test/system/Adaptation/CMakeLists.txt

Reverted CMakeLists changes

by cwomack

edit test/system/Adaptation/CMakeLists.txt

Upgrade to latest refine

by galbramc

edit src/Meshing/refine/MesherInterface_refineParams.cpp
edit test/unit/Meshing/refine/refine2D_btest.cpp
edit src/Meshing/refine/MesherInterface_refine.h
edit src/Meshing/refine/refine_ptr.h
edit test/unit/Meshing/refine/refine3D_btest.cpp
edit src/Meshing/refine/XField_refine.cpp
edit src/Meshing/refine/refine_grid.cpp
edit src/Meshing/refine/MesherInterface_refine.cpp

Fix compile error

by galbramc

edit src/Meshing/refine/MesherInterface_refine.cpp

One more refine fix

by galbramc

edit src/Meshing/refine/MesherInterface_refine.cpp

vera fix

by galbramc

edit src/Meshing/refine/refine_grid.cpp

Update CMake for ParMETIS/METIS on github. Updated to newer Find Python3.

by galbramc

edit CMakeInclude/Checks/CheckSUITESPARSE.cmake
edit CMakeInclude/Checks/CheckBoostPYTHON.cmake
add CMakeInclude/Checks/CheckMETIS.cmake
edit CMakeInclude/Builds/BuildBoost.cmake
edit CMakeInclude/Dependencies.cmake
edit CMakeInclude/Builds/parmetis-CMakeLists.patch
edit CMakeInclude/Checks/CheckPARMETIS.cmake
edit CMakeInclude/Finds/FindPARMETIS.cmake
add CMakeInclude/Builds/BuildGKLIB.cmake
edit CMakeInclude/Builds/BuildPARMETIS.cmake
edit CMakeInclude/Finds/FindSUITESPARSE.cmake
add CMakeInclude/Builds/BuildMETIS.cmake
add CMakeInclude/Finds/FindMETIS.cmake

Don',t write restart.meshb from refine

by galbramc

edit src/Meshing/refine/MesherInterface_refine.cpp

Remove restart.meshb from refine

by galbramc

edit src/Meshing/refine/MesherInterface_refine.cpp

Rework metis/parmetis build again

by galbramc

add CMakeInclude/Builds/metis-CMakeLists.patch
edit CMakeInclude/Builds/BuildMETIS.cmake
add CMakeInclude/Builds/metis-libmetis-CMakeLists.patch
edit CMakeInclude/MakeSummaryFile.cmake
edit CMakeInclude/Dependencies.cmake
edit CMakeInclude/Builds/BuildGKLIB.cmake
edit CMakeInclude/Builds/BuildPARMETIS.cmake
delete CMakeInclude/Builds/parmetis-metis-CMakeLists.patch

Don',t build extern libs in parallel

by galbramc

edit scripts/jenkins/SANS_Commit.sh

Fix intel warning

by galbramc

edit src/Meshing/refine/MesherInterface_refine.cpp

Update GKlib build and suitesparse check

by galbramc

edit CMakeInclude/Builds/BuildGKLIB.cmake
edit CMakeInclude/Checks/CheckSUITESPARSE.cmake
add CMakeInclude/Checks/umfpack_test.cxx
add CMakeInclude/Builds/gklib-gk_arch.patch

Forgot a file

by galbramc

edit CMakeInclude/Finds/FindSUITESPARSE.cmake

Another parmetis build fix

by galbramc

edit CMakeInclude/Finds/FindPARMETIS.cmake

Update cmake summary file

by galbramc

edit CMakeInclude/MakeSummaryFile.cmake

Finally maybe

by galbramc

edit CMakeInclude/Finds/FindPARMETIS.cmake

Print absolute and relative PETSc tolerance

by galbramc

edit src/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_impl.h
edit src/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver.h

Add fPIC when building GKlib

by galbramc

edit CMakeInclude/Builds/BuildGKLIB.cmake

More cmake fixes

by galbramc

edit CMakeInclude/Checks/CheckPARMETIS.cmake
edit CMakeInclude/Finds/FindPARMETIS.cmake
edit CMakeInclude/Dependencies.cmake
edit CMakeInclude/Builds/BuildREFINE.cmake

Remove message

by galbramc

edit CMakeInclude/Builds/BuildREFINE.cmake

Maybe finally got it right...

by galbramc

edit CMakeInclude/Dependencies.cmake

Slightly prettier formatting for PETSc history

by galbramc

edit src/LinearAlgebra/SparseLinAlg/PETSc/PETScSolver_impl.h

Add metis to refine libraries

by galbramc

edit CMakeInclude/Finds/FindREFINE.cmake

Added adjoint DBL to scalar function

by cwomack

edit src/pde/AnalyticFunction/ScalarFunction2D.h
edit src/pde/AnalyticFunction/ScalarFunction2D.cpp
edit test/unit/pde/AnalyticFunction/ScalarFunction2D_btest.cpp
edit test/unit/IO/pde/ScalarFunction2D_pattern.txt

Fixed unit test tolerance issue

by cwomack

edit test/unit/pde/AnalyticFunction/ScalarFunction2D_btest.cpp

Lowered DBL unit test tolerance

by cwomack

edit test/unit/pde/AnalyticFunction/ScalarFunction2D_btest.cpp

Changed BOOST_CHECK to SANS_CHECK

by cwomack

edit test/unit/pde/AnalyticFunction/ScalarFunction2D_btest.cpp

Added renat999@mit.edu to DeveloperEmailAddresses

by renat999

edit DeveloperEmailAddresses

Add fourier modes for asymmetric rotor body forces

by galbramc

edit test/unit/pde/NS/PDEEulermitAVDiffusion3D_RotorSource_btest.cpp
edit src/UserInterfaces/BodyForceSolver_impl.h
edit test/unit/pde/NS/PDEEuler3D_RotorSource_btest.cpp
edit src/Meshing/EGADS/RotorSource/Rotor.h
edit src/pde/NS/PDEEuler3D_RotorSource.h
edit src/Meshing/EGADS/RotorSource/Rotor.cpp

Forgot a file

by galbramc

edit test/unit/Discretization/GloballyConstrained/Ping_Euler_RotorSource_btest.cpp

Update test

by galbramc

edit test/unit/pde/NS/PDEEulermitAVDiffusion3D_RotorSource_btest.cpp

Fixes for Ubuntu 22.04. Compiler flags for IntelLLVM and relaxed tolerances.

by galbramc

edit src/MPI/operations.h
edit test/unit/pde/FullPotential/SolutionFunction_Potential2D_btest.cpp
edit test/unit/pde/Sensor/Sensor_AdvectiveFlux1D_btest.cpp
edit test/unit/Discretization/DG/SolutionData_DGBR2_btest.cpp
edit src/LinearAlgebra/DenseLinAlg/DynamicSize/MatrixD_Decompose_LU_MatrixS_Instantiate.cpp
edit src/LinearAlgebra/DenseLinAlg/DynamicSize/MatrixD_InverseLUP_MatrixS_Instantiate.cpp
edit test/unit/pde/FullPotential/SolutionFunction2D_LIP_btest.cpp
edit test/unit/Discretization/Galerkin/IntegrandCell_Galerkin_Stabilized_AD_btest.cpp
edit src/tools/plus_std_vector.h
edit test/system/LocalSolve/ElementDualLocalSolve2D_Galerkin_Stabilized_Triangle_AD_btest.cpp
edit src/Meshing/libMeshb/WriteMesh_libMeshb.cpp
edit test/unit/Discretization/Galerkin/JacobianCell_Galerkin_AD_ArtificialViscosity_btest.cpp
edit test/unit/Discretization/Galerkin/JacobianBoundaryTrace_LinearScalar_mitLG_Galerkin_AD_btest.cpp
edit test/unit/Discretization/Galerkin/JacobianCell_Galerkin_AD_btest.cpp
edit test/sandbox/Solve1D_DGAdvective_Line_Euler_Sod_toy.cpp
edit src/LinearAlgebra/DenseLinAlg/StaticSize/MatMul/MatrixS_MatMul_Native_Real_Instantiate.cpp
edit src/LinearAlgebra/DenseLinAlg/DynamicSize/MatrixD_Decompose_LUP_MatrixS_Instantiate.cpp
edit test/unit/pde/FullPotential/BCLinearizedIncompressiblePotential2D_sansLG_btest.cpp
edit test/unit/BasisFunction/BasisFunctionLine_btest.cpp
edit test/unit/Discretization/Galerkin/SolutionData_Galerkin_Stabilized_btest.cpp
edit test/unit/pde/AdvectionDiffusion/AdvectiveFlux1D_btest.cpp
edit test/unit/UnitGrids/XField2D_ForwardStep_Quad_X1.cpp
edit CMakeInclude/CompilerFlags.cmake
edit test/unit/UnitGrids/XField3D_ForwardStep_Hex_X1.cpp
edit test/unit/UnitGrids/XField4D_Box_Pentatope_X1.cpp

Fix permissions

by galbramc

edit test/unit/pde/Sensor/Sensor_AdvectiveFlux1D_btest.cpp
edit test/unit/pde/AdvectionDiffusion/AdvectiveFlux1D_btest.cpp
edit src/MPI/operations.h
edit test/unit/pde/FullPotential/SolutionFunction_Potential2D_btest.cpp
edit src/tools/plus_std_vector.h
edit test/unit/pde/FullPotential/SolutionFunction2D_LIP_btest.cpp
edit test/unit/pde/FullPotential/BCLinearizedIncompressiblePotential2D_sansLG_btest.cpp

Intel and gnu12 fixes

by galbramc

edit src/Field/Field_DG/FieldVolume_DG_Cell_Instantiate_3D.cpp
edit src/Field/FieldBaseVolume_Instantiate.cpp
edit src/Field/XField/Local/XField_LocalPatchConstructor/XField_LocalPatchConstructor_impl.h
edit src/Discretization/VMSDBR2/IntegrandBoundaryTrace_Flux_mitState_VMSD_BR2.h
edit src/Field/FieldVolume_Instantiate_3D.cpp
edit src/Field/Field_CG/FieldVolume_CG_Cell_Instantiate_3D.cpp

Add missing instantiations

by galbramc

edit src/BasisFunction/BasisFunctionVolume_Projection.cpp
edit src/BasisFunction/BasisFunctionArea_Projection.cpp
edit src/Field/FieldBaseVolume_Instantiate.cpp

More link error fixes

by galbramc

edit src/BasisFunction/BasisFunctionSpacetime_Projection.cpp
edit src/BasisFunction/BasisFunctionLine_Projection.cpp
edit src/Field/FieldBaseSpacetime_Instantiate.cpp
edit src/BasisFunction/BasisFunctionArea_Projection.cpp
edit src/Field/Field_DG/FieldSpacetime_DG_Cell_Instantiate_4D.cpp
edit src/BasisFunction/BasisFunctionVolume_Projection.cpp
edit src/Field/FieldBaseArea_Instantiate.cpp

One more missing instantiation

by galbramc

edit src/Field/Field_DG/FieldSpacetime_DG_Cell_Instantiate_4D.cpp

Relax tolerance for intel

by galbramc

edit test/unit/PanelMethod/PiecewiseConstSourcePanel_FlatPlate3D_btest.cpp

Put calculateStroudQuadrature in SANS namespace

by galbramc

edit src/Quadrature/Quadrature_Simplex_StroudConical.cpp
edit src/Quadrature/Quadrature_Simplex_StroudConical.h

SANS_refine/builddir=release_clang,buildnode=reynolds #122

Duration: 23 min

SANS_refine/builddir=release_gnu10,buildnode=reynolds #122

Duration: 29 min

SANS_refine/builddir=release_gnu11,buildnode=reynolds #122

Duration: 30 min

SANS_refine/builddir=release_gnu9,buildnode=reynolds #122

Duration: 31 min

SANS_refine/builddir=release_intel,buildnode=reynolds #122

Duration: 40 min

Compiler Errors

 /jenkins/workspace/SANS_refine/builddir/release_intel/buildnode/reynolds/src/Meshing/refine/XField_refine.cpp(198): [4,31,49mfatal error: in ",SANS::XField_refine<,PhysDim, TopoDim>,::XField_refine(boost::mpi::communicator, const std::__cxx11::basic_string<,char, std::char_traits<,char>,, std::allocator<,char>,>, &,, const std::__cxx11::basic_string<,char, std::char_traits<,char>,, std::allocator<,char>,>, &,) [with PhysDim = PhysD2, TopoDim = TopoD2]",: /jenkins/workspace/SANS_refine/builddir/release_intel/buildnode/reynolds/src/Meshing/refine/XField_refine.cpp(198): Throw in function SANS::XField_refine<,PhysDim, TopoDim>,::XField_refine(boost::mpi::communicator, const std::__cxx11::basic_string<,char, std::char_traits<,char>,, std::allocator<,char>,>, &,, const std::__cxx11::basic_string<,char, std::char_traits<,char>,, std::allocator<,char>,>, &,) [with PhysDim = PhysD2, TopoDim = TopoD2]
, Mike.Park@nasa.gov Sending email to: galbramc@mit.edu [PostBuildScript] - [INFO] Executing post build scripts. [PostBuildScript] - [INFO] Build does not have any of the results [SUCCESS]. Did not execute build step #0. [Static Analysis] Reference build recorder is not configured [Static Analysis] Obtaining reference build from same job (SANS_refine) [Static Analysis] Using reference build 'SANS_refine #119' to compute new, fixed, and outstanding issues [Static Analysis] Issues delta (vs. reference build): outstanding: 0, new: 0, fixed: 0 [Static Analysis] Evaluating quality gates [Static Analysis] -> PASSED - Total (any severity): 0 - Quality Gate: 1 [Static Analysis] -> All quality gates have been passed [Static Analysis] Health report is disabled - skipping [Static Analysis] Created analysis result for 0 issues (found 0 new issues, fixed 0 issues) [Static Analysis] Attaching ResultAction with ID 'analysis' to build 'SANS_refine #122'. [Checks API] No suitable checks publisher found. Finished: FAILURE