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  1. get some initial code thoughts up.. (details)
  2. quadrature params stuff (details)
  3. personal add to gitignore (details)
  4. merge in branch (details)
  5. minor (details)
  6. done plots for BOD (details)
  7. working on ice model (details)
  8. minor testing (details)
  9. working on multi-dimensional ice model (details)
  10. stopping crit based on first iteration. (details)
  11. pre_solve and post_solve methods (details)
  12. working on adaptivity for spatially varying ice model (details)
  13. push for daniele (details)
  14. modified interface for refinement (details)
  15. modified refinement for sparse grid (details)
  16. initialized map to identity prior to minimize_kl_divergence first call (details)
  17. move sparse grid adaptation (forming the sparse grid)  into 'quadrature' (details)
  18. current tests on BananPlots (details)
  19. add comments for myself for tomorrow (details)
  20. working on ice settin (details)
  21. 'GradientDimensionAdaptiveSparseGridKLMinimizationValidator' (details)
  22. working on ice model (details)
  23. working on whitening of ice model (details)
  24. working on ice (details)
  25. better inverse map for ice problem (details)
  26. minor (details)
  27. sparse grid is not extracting f from kwargs, to be passed every time (details)
  28. preparing for run (details)
  29. trying modification to variance diag calculation (details)
  30. try except in _refinement of KLAdaptivity (details)
  31. sign error. BOD (details)
  32. working on ice (details)
  33. modified external interface for (x,w) for sparse grid library. (details)
  34. BananaPlots works perfectly. (details)
  35. BananaPlots MC vs SG. curently the MC doesnt work because in my branch (details)
  36. just some printing for diagnosing (details)
  37. consistent naming (details)
  38. bod plots for mcqmc (details)
  39. add the points on the top of the plots for BOD sparse grid (details)
  40. kwargs (details)
  41. Is this a bug? (details)
  42. setting results on paper (details)
  43. add arguments to pre/post solve (details)
  44. testing ideas... (details)
  45. add x,w, to dictionary after error estimation (details)
  46. validators (details)
  47. finished with tests for this branch. starting new branch for quadrature (details)
  48. pushing commented out code that shows the error of log(0) (details)
  49. changed tolerance for bod problem (details)
  50. figuring out tolerances (details)
  51. Remove class GradientDimensionAdaptiveSparseGridKLMinimizationValidator. (details)
  52. comments, and justfication for changes with comments  for Daniele (details)
  53. remove some unnecesssary code. (details)
  54. remove more comments, etc (details)
  55. testing default_initial_quadrature. (details)
  56. Trying to case on whether or not 'initial' grid was laready created. (details)
  57. some order in the tolerances (maybe) (details)
  58. sort weights by absolute value for more stability in order of addition. (details)
  59. Place plotting under a boolean for toggling ease. (details)
  60. commenting and refining quadrature... (details)
  61. clean up quadrature qtype 4 (details)
  62. remove 'np.newaxis' everywhere. use [x], now that I understand the (details)
  63. no need for 'previous_fval' under current algorithm.. (details)
  64. KeyError exception for default quadrature (details)
  65. KeyError for presolve. (details)
  66. coment an issue with this branch. why is pull_tar.n_coeffs missing if we (details)
  67. add ref_params to post_solve (details)
  68. add ref_params to post_solve, logger info (details)
  69. Fix BananaPlots for current interface (details)
  70. Oops, I accidentally merged branches incorrectly. Just rolling back some (details)
  71. add stochastic volatility to this branch. (details)
  72. trying much simpler interface to functions/integrands for sparse grid (details)
  73. bug fix (details)
  74. space (details)
  75. comments (details)
  76. add stochastic volatility  to this branch (details)
  77. change tol for StochasticVolatility.. decrase max_grid_pts to alleviate (details)
  78. rethinking instantiation of parameters for GaussianDistribution (details)
  79. reshaping the quadrature function in GaussianDistribution (details)
  80. using bfgs in adaptivity for now to make sense of tolerances. working on (details)
  81. we don't need 'converged', or 'termination reason' or the integral (details)
  82. BFGS for the BOD problem (details)
  83. now adaptive_quadratures can be built also wrt for pushforward/pullback (details)
  84. relegate checking for uniqueness if x,w to some 'debug' mode in future (details)
  85. start testing laplace approximation. new BOD file for that. (details)
  86. added missing file (details)
  87. mirroring what we've done in frozendistributions quadature, dont need to (details)
  88. adapter -> qparams['adapter'] (details)
  89. techincally dont need two files, just separate them though so we can (details)
  90. nax = np.newaxis (details)
  91. standard normal doesn't need trnasformation (dont need to use sampling (details)
  92. right now quadratur requires abs_tol, even if initial grid is just an (details)
  93. pre/post solve fixes try except - > if else (details)
  94. pre/post solve fixes (details)
  95. Decrease optimizaiton tol for the Laplace Approx problem, since its (details)
  96. testing parameters for initial_quadrature (details)
  97. I believe you need to warmstart here. (details)
  98. use error estimation points in post_solve (details)
  99. allow first variation/line serach to use the last set of points from (details)
  100. add L^2 regularization part of objective gradient. this right now is (details)
  101. add regularization to the laplace approx example (details)
  102. Revert "add L^2 regularization part of objective gradient. this right (details)
  103. slash \, and justification for qparams abs_tol (details)
  104. add norm printing (details)
  105. more informative comment. realized that the regularization is (details)
  106. stuff for l2 regularization (details)
  107. parameter adjustments: decrease regularizaztion, relax the initial (details)
  108. make the optimization a bit easier for this regularized problem. too (details)
  109. setting up Poisson (details)
  110. almost done with the constant field Poisson setting (details)
  111. fixing gradients (details)
  112. Poisson problem set up for constant field and Gaussian field (details)
  113. whitening script for Poisson (details)
  114. added action of the Hessian (details)
  115. fixed whitening script and added xml map descriptor (details)
  116. fixed bug in FrozenDistributions qtype==0 (details)
  117. change how w outputs in darkspark (details)
  118. increase max allowed levels... all quadarture levels were maxing out at (details)
  119. increase max allowed levels to a very high amount.. (details)
  120. fix a bug (details)
  121. working on sv (details)
  122. working on new active variable detection technique (details)
  123. turn try except into if/else. comment out new metho for  prunning of (details)
  124. abs_tol is not needed for the default quad case. bring back 'self.eps', (details)
  125. if BFGS with inf norm, print inf norm of jacobina, not 2 norm. (details)
  126. eps in validator (details)
  127. working on SV. Try ½ solve tol to start with. ½ each time. set a minimum (details)
  128. prints (details)
  129. Informative printing of info, revert to 1/10 solve_tol, seems to work. (details)
  130. start MC SV (details)
  131. working on sv tests for talk (details)
  132. figures generated for Josh talk (details)
  133. update poisson example for newer versions of fenics (details)
  134. undo bug (details)
  135. start with diagonal (details)
  136. Fixed Poisson problem set up in SG adaptivity (details)
  137. made DARKSparK and optional External package (details)
  138. mpi works on the poisson example (details)
  139. cleaning up poisson problem to be included to the available (details)
  140. working on general setting of PDE problems with FENICS (details)
  141. going on... (details)
  142. going on.. (details)
  143. going on.. (details)
  144. almost done with the Poisson setting (details)
  145. added LinearTriangularMap for fast regression (nested Cholesky) (details)
  146. working on setting for Poisson problem (details)
  147. working on Poisson (details)
  148. added the bootstrap validator and changed arguments on error_estimation (details)
  149. added bootstrap option to tmap-tm (details)
  150. working on the bootstrap validator (details)
  151. changed the stopping criterion for the bootstrap validator (details)
  152. polishing adaptivity (details)
  153. fixing coefficients update and cache usage in first variation (details)
  154. added better estimation of points multiplier for bootstrap validator (details)
  155. working on randomized approximation of Hessian for Laplace approximation (details)
  156. randomized_direct_svd works (details)
  157. randomized svd is consistent with eigenvalue decomposition (details)
  158. low-rank laplace work with outer gradients and low-rank hessian (details)
  159. implementing likelihood informed subspace procedure (details)
  160. working on Laplace approximation with lis in the head of the square root (details)
  161. added option lis on tmap-laplace. LinearTransportMaps and (details)
Commit 4c9562bcbc7580ecf7e77a9bb4719d18ca2fd3d1 by joshuawchen
get some initial code thoughts up..
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
Commit 2de7fe380aefebad669f4bc4b67166a5c34d5811 by joshuawchen
quadrature params stuff
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
Commit a0369287a5b701b5a72cab37ac9750322651fe4b by joshuawchen
personal add to gitignore
The file was modified .gitignore (diff)
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
Commit d6b416ce15f435f4e64d620bd8e20e5affcdffa4 by dabi
done plots for BOD
The file was modified Examples/research/MonotoneTransport-paper/BOD/BODPosteriorConditioning.py (diff)
The file was modified Examples/research/MonotoneTransport-paper/BOD/BODPlots.py (diff)
The file was modified TransportMaps/Diagnostics/Plotting.py (diff)
Commit 476cd652688091c582dc2dcbe597466a70deda96 by dabi
working on ice model
The file was modified Examples/research/MonotoneTransport-paper/IceThickness/main.py (diff)
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
Commit d838bec25d365b48f62720c4494c6e132ca635a0 by dabi
working on multi-dimensional ice model
The file was modified Examples/research/MonotoneTransport-paper/IceThickness/main.py (diff)
The file was modified TransportMaps/Distributions/TransportMapDistributions.py (diff)
The file was addedExamples/research/MonotoneTransport-paper/IceThickness/HeightPriorGeneration.py
Commit da4e516b1ea97ce1a768b6977d2030e0759086e7 by joshuawchen
stopping crit based on first iteration.
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
Commit db30493fda57c3e9854775ba3a5f9cd33d257848 by joshuawchen
pre_solve and post_solve methods
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
Commit f352a2147bf59e837889764e065e02006f3276da by dabi
working on adaptivity for spatially varying ice model
The file was modified Examples/research/MonotoneTransport-paper/IceThickness/aux.py (diff)
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
The file was addedExamples/research/MonotoneTransport-paper/IceThickness/DistributionGeneration.py
The file was removedExamples/research/MonotoneTransport-paper/IceThickness/HeightPriorGeneration.py
The file was addedExamples/research/MonotoneTransport-paper/IceThickness/ICErun.py
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
Commit 50abe0fd0570787558a7eb9cf1bc0ddb527d9b28 by dabi
modified interface for refinement
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
Commit 162ee0b962b55614ae03410ee884b69a206c8f0e by dabi
modified refinement for sparse grid
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
Commit cae15e241463541ea7e41a45153186d2c1d0b53e by dabi
initialized map to identity prior to minimize_kl_divergence first call
The file was modified TransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
Commit d8769be883fe9ef1ed64673e2d7423e77eaa9cf5 by joshuawchen
move sparse grid adaptation (forming the sparse grid)  into 'quadrature'
function
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
Commit 8d36a64ca9aa3cc893c8d2e906dc502a1cafe391 by joshuawchen
current tests on BananPlots
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was addedExamples/research/SparseGridAdaptivity/BananaPlots.py
Commit e2051492fb6fc0e1dfb22612cbd6a5b41940f95d by joshuawchen
add comments for myself for tomorrow
The file was modified Examples/research/SparseGridAdaptivity/BananaPlots.py (diff)
Commit 3887a826f95a242097aff37fcd51bf432e78c6f4 by dabi
working on ice settin
The file was modified Examples/research/MonotoneTransport-paper/IceThickness/ICErun.py (diff)
The file was modified scripts/tmap-tm (diff)
The file was modified Examples/research/MonotoneTransport-paper/IceThickness/aux.py (diff)
The file was modified Examples/research/MonotoneTransport-paper/IceThickness/main.py (diff)
The file was modified TransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
The file was modified Examples/research/MonotoneTransport-paper/BOD/BODrun.py (diff)
The file was modified Examples/research/MonotoneTransport-paper/IceThickness/DistributionGeneration.py (diff)
The file was modified TransportMaps/CLI/AvailableOptions.py (diff)
Commit 579a19807b43a109ef22265ec51d847fb2bf8139 by joshuawchen
 'GradientDimensionAdaptiveSparseGridKLMinimizationValidator'
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was modified Examples/research/SparseGridAdaptivity/BananaPlots.py (diff)
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
Commit b7c692899867935c4d91acf0ef7554dfb55669a1 by dabi
working on ice model
The file was modified Examples/research/MonotoneTransport-paper/IceThickness/DistributionGeneration.py (diff)
The file was modified TransportMaps/Functionals/MonotonicFunctionApproximations.py (diff)
The file was modified Examples/research/MonotoneTransport-paper/IceThickness/main.py (diff)
Commit b650e5c06c549c608e2aa49571de7cd7ce89ea77 by dabi
working on whitening of ice model
The file was modified TransportMaps/Functionals/MonotonicFunctionApproximations.py (diff)
The file was modified TransportMaps/Functionals/ParametricFunctionApproximationBase.py (diff)
The file was modified Examples/research/MonotoneTransport-paper/IceThickness/main.py (diff)
The file was modified Examples/research/MonotoneTransport-paper/IceThickness/DistributionGeneration.py (diff)
The file was modified TransportMaps/Maps/TriangularTransportMapBase.py (diff)
The file was modified Examples/research/MonotoneTransport-paper/IceThickness/DistributionGeneration.py (diff)
Commit be931153852cf61db820b77e1d72141bb98ab333 by dabi
better inverse map for ice problem
The file was modified Examples/research/MonotoneTransport-paper/IceThickness/DistributionGeneration.py (diff)
The file was modified Examples/research/MonotoneTransport-paper/IceThickness/main.py (diff)
The file was modified Examples/research/MonotoneTransport-paper/IceThickness/DistributionGeneration.py (diff)
Commit 374c6cc2a62cb55afe156a9835a10a0f4aab9758 by dabi
sparse grid is not extracting f from kwargs, to be passed every time
qtype is 4
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
The file was modified Examples/research/MonotoneTransport-paper/Banana/BananaPlots.py (diff)
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was modified Examples/research/SparseGridAdaptivity/BananaPlots.py (diff)
The file was modified TransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
Commit 865e12f57db1e49fdfe42232d9907a0e240e6364 by joshuawchen
trying modification to variance diag calculation
The file was modified TransportMaps/Diagnostics/Routines.py (diff)
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
Commit e7e8f23ed0b23f4dc1a02b8d35ca878d84f2ea8b by joshuawchen
try except in _refinement of KLAdaptivity
The file was modified TransportMaps/Diagnostics/Routines.py (diff)
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
The file was modified TransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was addedExamples/research/SparseGridAdaptivity/BOD/BODdist.py
The file was addedExamples/research/SparseGridAdaptivity/Banana/BananaPlots.py
The file was addedExamples/research/SparseGridAdaptivity/BOD/TestNewBOD.py
The file was addedExamples/research/SparseGridAdaptivity/BOD/BODPlots.py
The file was addedExamples/research/SparseGridAdaptivity/BOD/BODrun.py
The file was removedExamples/research/SparseGridAdaptivity/BananaPlots.py
The file was addedExamples/research/SparseGridAdaptivity/BOD/BODPosteriorConditioning.py
The file was modified Examples/research/MonotoneTransport-paper/IceThickness/DistributionGeneration.py (diff)
The file was modified Examples/research/MonotoneTransport-paper/IceThickness/ICErun.py (diff)
Commit 079943d4beaf7f20bd277a665b6590506d298382 by joshuawchen
modified external interface for (x,w) for sparse grid library.
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
Commit 8d967c2941c57045f6ace6e4fce9ed99943cd0ba by joshuawchen
BananaPlots works perfectly.
The file was modified Examples/research/SparseGridAdaptivity/Banana/BananaPlots.py (diff)
Commit 3d6cb0799cff887079069febba7f8c46a1c23d88 by joshuawchen
BananaPlots MC vs SG. curently the MC doesnt work because in my branch
solve_to_tolerance is not implemented correctly due to refinement
running first.
The file was modified Examples/research/SparseGridAdaptivity/Banana/BananaPlots.py (diff)
The file was addedExamples/research/SparseGridAdaptivity/Banana/BananaPlotsMonteCarlo.py
Commit 5677e1c9053076e20c0eb94c05f0549a312b2489 by joshuawchen
just some printing for diagnosing
The file was modified TransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was modified Examples/research/SparseGridAdaptivity/BOD/BODrun.py (diff)
The file was modified Examples/research/SparseGridAdaptivity/BOD/BODPlots.py (diff)
Commit c7e17e4ba30467a4dcdc685427c699262849588e by dabi
bod plots for mcqmc
The file was modified Examples/research/MonotoneTransport-paper/IceThickness/DistributionGeneration.py (diff)
The file was modified Examples/research/MonotoneTransport-paper/BOD/BODPosteriorConditioning.py (diff)
Commit fe14654a23683aff0fbb3bb9f547eedc4b8f0b3a by joshuawchen
add the points on the top of the plots for BOD sparse grid
The file was modified Examples/research/SparseGridAdaptivity/BOD/BODPlots.py (diff)
The file was modified Examples/research/SparseGridAdaptivity/BOD/BODPlots.py (diff)
The file was modified Examples/research/SparseGridAdaptivity/BOD/BODrun.py (diff)
The file was modified TransportMaps/Diagnostics/Routines.py (diff)
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
The file was modified TransportMaps/Distributions/TransportMapDistributions.py (diff)
The file was modified Examples/research/MonotoneTransport-paper/BOD/BODrun.py (diff)
Commit b9dcc49827853d670124461195d6aafadd5fc079 by dabi
setting results on paper
The file was modified Examples/research/MonotoneTransport-paper/BOD/BODrun.py (diff)
Commit 1c863b933a1697bce5cf3011dafff1e0e71a7a88 by joshuawchen
add arguments to pre/post solve
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was modified TransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
The file was modified TransportMaps/Distributions/TransportMapDistributions.py (diff)
The file was modified TransportMaps/Diagnostics/Routines.py (diff)
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
Commit b4b24f32f7cb5aa2c5760ec50dcd034dd226d20e by joshuawchen
add x,w, to dictionary after error estimation
The file was modified Examples/research/SparseGridAdaptivity/BOD/BODrun.py (diff)
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was modified TransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
Commit 695d9da051da76f20137a38c2071ded3115327d3 by joshuawchen
finished with tests for this branch. starting new branch for quadrature
at every step of optimization
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
Commit c76ba5f545509adb495d567f88d82f4da261558f by joshuawchen
pushing commented out code that shows the error of log(0)
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was modified TransportMaps/Diagnostics/Routines.py (diff)
Commit 59229b2e49d01722e278058f2f4813fee73a76a6 by dabi
changed tolerance for bod problem
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was modified Examples/research/SparseGridAdaptivity/BOD/BODrun.py (diff)
Commit aeb810db87077a9d69323eb8f9051b004bf79ee1 by dabi
figuring out tolerances
The file was modified Examples/research/SparseGridAdaptivity/BOD/BODrun.py (diff)
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
Commit 24e414d950398e8f779211c4a858b6fd6e1cb799 by joshuawchen
Remove class GradientDimensionAdaptiveSparseGridKLMinimizationValidator.
Merged into DimensionAdaptiveSparseGridKLMinimizationValidator.
redo qtype = 4 quadrture.. Daniele, some notes were put next to thigns
I changed back that you modified. You can search for your name.
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was modified TransportMaps/Diagnostics/Routines.py (diff)
The file was modified Examples/research/SparseGridAdaptivity/BOD/BODrun.py (diff)
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
Commit 7e7de20582d17883701982650f2e1125f6e3d155 by joshuawchen
comments, and justfication for changes with comments  for Daniele
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
Commit 6ea67904055af7249f4faedd260939ec19a24fcb by joshuawchen
remove some unnecesssary code.
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
Commit 44ba95d63cd6cd4864f617f9b16360ca7de51486 by joshuawchen
remove more comments, etc
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
Commit 1820fd7522b84d51494b02cb627bf371b278b0f5 by joshuawchen
testing default_initial_quadrature.
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
Commit f3ca15865a0d5d00acb5c9b0027e6bc80c700fe2 by joshuawchen
Trying to case on whether or not 'initial' grid was laready created.
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
Commit 28d3dd8686a79c72ff4b75e3f7df329edc90d822 by dabi
some order in the tolerances (maybe)
The file was modified TransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was modified TransportMaps/Diagnostics/Routines.py (diff)
The file was modified Examples/research/SparseGridAdaptivity/BOD/BODrun.py (diff)
Commit 7d30dc1a03b59764b71348cb9de25cde3989fb60 by joshuawchen
sort weights by absolute value for more stability in order of addition.
add unique sparse grid quadrature interface
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
Commit 14671738d652e5d13fbd504f053416e84fb957d4 by joshuawchen
Place plotting under a boolean for toggling ease.
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was modified TransportMaps/Diagnostics/Routines.py (diff)
Commit c670eb33f77f82bc2b4deedb74d4facaeb5517e3 by joshuawchen
commenting and refining quadrature...
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
Commit f797e3b951f3a7895abad3d414d339379b37068c by joshuawchen
clean up quadrature qtype 4
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
Commit 6087a261e6e559c1e1cc872acc1b1eeb42134f1e by joshuawchen
remove 'np.newaxis' everywhere. use [x], now that I understand the
interface.
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was modified TransportMaps/Diagnostics/Routines.py (diff)
Commit dc711869ddce23f8ff3a42ac9c5efacdcf7ffced by joshuawchen
no need for 'previous_fval' under current algorithm..
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
Commit 33805d99ab0b06f3ba48d50f40825c22dcc53a51 by joshuawchen
KeyError exception for default quadrature
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
Commit 7ea3998c74d52cb9e140acc0d66eac5a4a9a3fb4 by joshuawchen
KeyError for presolve.
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
Commit 89a8dc5819e5a86d9fba5aff6218213670450d44 by joshuawchen
coment an issue with this branch. why is pull_tar.n_coeffs missing if we
dont call refinement first?
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
Commit 48cedd51caaa7768cc60c4f48b37b97135d2e741 by joshuawchen
add ref_params to post_solve
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
Commit 18be611c252b4753971d6dff09dba9a2182fbfac by joshuawchen
add ref_params to post_solve, logger info
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
Commit 720e0636511710a8c641cd9fd2be3193cf3202d3 by joshuawchen
Fix BananaPlots for current interface
The file was modified Examples/research/SparseGridAdaptivity/Banana/BananaPlots.py (diff)
Commit ef664934dcd607eda2bf3cc6eb401d365a04e02e by joshuawchen
Oops, I accidentally merged branches incorrectly. Just rolling back some
changes..
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
Commit ecc20ade5dac42f0e3d2ac75c768fad072a3416e by joshuawchen
add stochastic volatility to this branch.
The file was addedExamples/research/SparseGridAdaptivity/StochasticVolatility/StochastivVolatilityPlots.py
The file was addedExamples/research/SparseGridAdaptivity/StochasticVolatility/StochastivVolatilityrun.py
Commit 007a5a75cf5812288e1addbcd453cc753ee4440b by joshuawchen
trying much simpler interface to functions/integrands for sparse grid
integration. only have to define an instance of a multidimesnioanl
function with a specified domain and codomain (the types matter)
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was modified TransportMaps/Diagnostics/Routines.py (diff)
The file was modified TransportMaps/Diagnostics/Routines.py (diff)
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
Commit e320657f8358204ba456390a60df1352c6612f63 by joshuawchen
add stochastic volatility  to this branch
The file was addedExamples/research/SparseGridAdaptivity/StochasticVolatility/StochastivVolatilityrun.py
The file was addedExamples/research/SparseGridAdaptivity/StochasticVolatility/StochastivVolatilityPlots.py
Commit 9e58fc9d54fb75fcaf59b7d6fcaeafb23675a5eb by joshuawchen
change tol for StochasticVolatility.. decrase max_grid_pts to alleviate
allocation costs
The file was modified Examples/research/SparseGridAdaptivity/StochasticVolatility/StochastivVolatilityrun.py (diff)
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
Commit 57e6624b5ac11b4105356cfb1b0b6607ffe8d442 by dabi
rethinking instantiation of parameters for GaussianDistribution
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
Commit c81955cb1f2c6824f268f4395747d925e3fab42f by dabi
reshaping the quadrature function in GaussianDistribution
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
Commit 0f54ca486448a919dca1413e913306325f1cf8bc by dabi
using bfgs in adaptivity for now to make sense of tolerances. working on
stochastic volatility
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
The file was modified TransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
The file was modified TransportMaps/Functionals/LinearSpanApproximationBase.py (diff)
The file was modified Examples/research/SparseGridAdaptivity/BOD/BODrun.py (diff)
The file was modified TransportMaps/Maps/TriangularTransportMapBase.py (diff)
The file was addedExamples/research/SparseGridAdaptivity/StochasticVolatility/StochasticVolatility-run.py
The file was modified TransportMaps/Diagnostics/Routines.py (diff)
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was removedExamples/research/SparseGridAdaptivity/StochasticVolatility/StochastivVolatilityrun.py
Commit 2bf917cb705a57ad34e3c2bb9b492b5adeea0031 by joshuawchen
we don't need 'converged', or 'termination reason' or the integral
value. adapter.integrate() doesnt return anything anymore. darkspark
will in the future provide warnings if things dont converge. in order to
really see whats going on with convergence, plotting only the second
half of the plots..
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
The file was modified TransportMaps/Maps/TriangularTransportMapBase.py (diff)
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
Commit c3aafd25a2649a717a45f76bada6a04fc386dde8 by joshuawchen
BFGS for the BOD problem
The file was modified Examples/research/SparseGridAdaptivity/BOD/BODrun.py (diff)
Commit 10afae8640da075f377f056befbf275fdd244618 by dabi
now adaptive_quadratures can be built also wrt for pushforward/pullback
distributions. To be tested.
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
The file was modified TransportMaps/Maps/MapBase.py (diff)
The file was modified TransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
The file was modified TransportMaps/Functionals/ProductDistributionParametricPullbackComponentFunctionBase.py (diff)
The file was modified TransportMaps/Maps/TriangularTransportMaps.py (diff)
The file was modified TransportMaps/Routines.py (diff)
The file was modified TransportMaps/Maps/FullTransportMaps.py (diff)
The file was modified TransportMaps/__init__.py (diff)
The file was modified TransportMaps/Distributions/TransportMapDistributions.py (diff)
The file was modified TransportMaps/Maps/TransportMapBase.py (diff)
The file was modified TransportMaps/Maps/TriangularTransportMapBase.py (diff)
Commit f54a528284a29c45e8ca043641053dd1151b472d by joshuawchen
relegate checking for uniqueness if x,w to some 'debug' mode in future
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
Commit 893b1a4b11a876fc9ee1df7b0e77a2ecb2134bcd by joshuawchen
start testing laplace approximation. new BOD file for that.
The file was addedExamples/research/SparseGridAdaptivity/BOD/BODLaplaceApproxrun.py
Commit 698f709d1f9c477c8ef283c9b69b30186932ad0b by dabi
added missing file
The file was addedTransportMaps/LaplaceApproximationRoutines.py
Commit ad8f1cb191de109e743ecec03cdfe4a1044521f6 by joshuawchen
mirroring what we've done in frozendistributions quadature, dont need to
create a function every time, just use lambda functions.
The file was modified TransportMaps/Diagnostics/Routines.py (diff)
Commit 2e4798e0153d09a256b0de663bebbb6b187b73cb by joshuawchen
adapter -> qparams['adapter']
The file was modified TransportMaps/Diagnostics/Routines.py (diff)
Commit ee58d71858e363ea90725f90438be1d6b1177299 by joshuawchen
techincally dont need two files, just separate them though so we can
generate different data, and experiment with tolerances.
The file was modified Examples/research/SparseGridAdaptivity/BOD/BODrun.py (diff)
The file was modified Examples/research/SparseGridAdaptivity/BOD/BODLaplaceApproxrun.py (diff)
The file was modified TransportMaps/LaplaceApproximationRoutines.py (diff)
Commit 294963beb2c7bc3c311f81438eb5025b38564787 by joshuawchen
standard normal doesn't need trnasformation (dont need to use sampling
mat or mu etc)
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
Commit b47ef2e5bb9a2b330e552e2c56930787c000c509 by joshuawchen
right now quadratur requires abs_tol, even if initial grid is just an
isotropic sparse grid.
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
Commit 73229a6e286b69586046be553bfd88e0a8d570c8 by joshuawchen
pre/post solve fixes try except - > if else
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
Commit 2ab93b43e0e1b100eabee6afb7fb14efc3a9dd7e by joshuawchen
Decrease optimizaiton tol for the Laplace Approx problem, since its
easier to get convergence of variance diagnostic this way...
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
The file was modified TransportMaps/Maps/TriangularTransportMapBase.py (diff)
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was modified Examples/research/SparseGridAdaptivity/BOD/BODLaplaceApproxrun.py (diff)
Commit bbf555c80b483c4de8d6d7ba3bb5a59678fccf2e by joshuawchen
testing parameters for initial_quadrature
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
Commit f8ccc366c2c80db1a49c82d8d4cee1af21b81737 by joshuawchen
I believe you need to warmstart here.
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
Commit a407aa2cca65d409ca81c9c2d11f494297564e98 by joshuawchen
use error estimation points in post_solve
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
Commit c362a3c94ace1c78b398c7c93a920d6658daf882 by joshuawchen
allow first variation/line serach to use the last set of points from
error_estimatino
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
Commit c04930e06b1f205101f7d30f0884fc932b5ca265 by joshuawchen
add L^2 regularization part of objective gradient. this right now is
very specific to l2 regularization. not general
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
Commit 6d608c2bce211d7d22f7aad9c34ca51096c16fb6 by joshuawchen
add regularization to the laplace approx example
The file was modified Examples/research/SparseGridAdaptivity/BOD/BODLaplaceApproxrun.py (diff)
Commit 22ac801e7d6b5dff3f9fe823d39fbd8a30d2d224 by joshuawchen
Revert "add L^2 regularization part of objective gradient. this right
now is very specific to l2 regularization. not general"
This reverts commit c04930e06b1f205101f7d30f0884fc932b5ca265.
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
Commit 31b74ccf4b67d58ecff5f7c54bb08fc27aca18f8 by joshuawchen
slash \, and justification for qparams abs_tol
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was modified TransportMaps/Maps/TriangularTransportMapBase.py (diff)
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
Commit bd3bba50b97bece7b5a485c447d290b78a8e5a13 by joshuawchen
more informative comment. realized that the regularization is
independent of the integrand,
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
Commit e4eeb63e43781b9c01f62af05f63adda0d9115bd by joshuawchen
stuff for l2 regularization
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
Commit 31b375f952f3045d8b21cf109260992ab8c0abf5 by joshuawchen
parameter adjustments: decrease regularizaztion, relax the initial
refinment, and error estimation quadarture a bit. increase the max grid
size for evaluating the integral a bit faster.  variance diagnostic tol
under eps_bull
The file was modified Examples/research/SparseGridAdaptivity/BOD/BODrun.py (diff)
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was modified Examples/research/SparseGridAdaptivity/BOD/BODLaplaceApproxrun.py (diff)
The file was modified TransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
The file was modified TransportMaps/Diagnostics/Routines.py (diff)
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
Commit cd543454fceb674370498d8136972bcfbea71913 by joshuawchen
make the optimization a bit easier for this regularized problem. too
many sparse gird points otherwise.
The file was modified Examples/research/SparseGridAdaptivity/BOD/BODLaplaceApproxrun.py (diff)
Commit 3a0674d750ed838857672a3f60255d1b67aca872 by dabi
setting up Poisson
The file was addedExamples/research/SparseGridAdaptivity/Poisson/PoissonDistribution.py
Commit 7bc855fd06d297a0d035d6624c5d563d34b8a7e6 by dabi
almost done with the constant field Poisson setting
The file was removedExamples/research/SparseGridAdaptivity/Poisson/PoissonDistribution.py
The file was addedExamples/research/SparseGridAdaptivity/Poisson/ConstantFieldDataGeneration.py
The file was addedExamples/research/SparseGridAdaptivity/Poisson/PoissonDistributions.py
The file was modified TransportMaps/FiniteDifference.py (diff)
The file was modified Examples/research/SparseGridAdaptivity/Poisson/ConstantFieldDataGeneration.py (diff)
The file was modified Examples/research/SparseGridAdaptivity/Poisson/PoissonDistributions.py (diff)
Commit 97f3dbc0c738d8d10e61eab4bf8b13c36efdf1a2 by dabi
Poisson problem set up for constant field and Gaussian field
The file was modified Examples/research/SparseGridAdaptivity/Poisson/ConstantFieldDataGeneration.py (diff)
The file was addedExamples/research/SparseGridAdaptivity/Poisson/GaussianFieldDataGeneration.py
The file was modified Examples/research/SparseGridAdaptivity/Poisson/PoissonDistributions.py (diff)
Commit 47201d73cb575b129304a394661a3c90d963bd88 by dabi
whitening script for Poisson
The file was addedExamples/research/SparseGridAdaptivity/Poisson/whiten.py
Commit dc4e8491840b36eca039aa985fdc44ff8d59b81a by dabi
added action of the Hessian
The file was modified Examples/research/SparseGridAdaptivity/Poisson/GaussianFieldDataGeneration.py (diff)
The file was modified Examples/research/SparseGridAdaptivity/Poisson/PoissonDistributions.py (diff)
Commit ee1c95cd428b875d7d97bb6f35d900b7600b48c1 by dabi
fixed whitening script and added xml map descriptor
The file was modified Examples/research/SparseGridAdaptivity/Poisson/whiten.py (diff)
The file was modified Examples/research/SparseGridAdaptivity/Poisson/PoissonDistributions.py (diff)
The file was addedExamples/research/SparseGridAdaptivity/Poisson/MapDescr-tr15.xml
Commit 2ccf2e4130f89dc5e60a82ecfe1c6dac8d8dba65 by dabi
fixed bug in FrozenDistributions qtype==0
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was modified Examples/research/SparseGridAdaptivity/StochasticVolatility/StochasticVolatility-run.py (diff)
Commit ca114240239eba92adc3a6ddf89e6f8cd9e33e93 by joshuawchen
change how w outputs in darkspark
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
Commit 33859db5e085ac289dbed5e508c66c18a70000c1 by joshuawchen
increase max allowed levels... all quadarture levels were maxing out at
6. this is obvioulsy an issue. relax it.
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
Commit cc7c841650975f94aec1c144ecf5eb4cf379c96a by joshuawchen
increase max allowed levels to a very high amount..
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
The file was modified Examples/research/SparseGridAdaptivity/StochasticVolatility/StochasticVolatility-run.py (diff)
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was modified TransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
The file was modified TransportMaps/Diagnostics/Routines.py (diff)
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
The file was modified Examples/research/SparseGridAdaptivity/BOD/BODrun.py (diff)
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was modified Examples/research/SparseGridAdaptivity/StochasticVolatility/StochasticVolatility-run.py (diff)
Commit d900b8dd4962fcf949839e4cc5a4d55d0ba60efa by dabi
working on new active variable detection technique
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was modified Examples/research/SparseGridAdaptivity/StochasticVolatility/StochasticVolatility-run.py (diff)
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
The file was modified TransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
Commit 3fd14c4efe89d95a683cbbc837ac055b9b3ad1cd by joshuawchen
turn try except into if/else. comment out new metho for  prunning of
inactive variables for now,  put levels plotting under boolean
The file was modified TransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
Commit 684ca72d7beacd2f24da5b465162fd4eecc70dd9 by joshuawchen
abs_tol is not needed for the default quad case. bring back 'self.eps',
solve_params doesnt need to define 'tol outside, this is more consistent
with the other validators.
'eps_bull' pased into variance_approx through default dictionary.
Relevant for any quadratures that adapt based on the tolerance eps_bull
The file was modified TransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
The file was modified TransportMaps/Diagnostics/Routines.py (diff)
Commit c60aa71bb097e80de0e6d1ac186511c842623a23 by joshuawchen
if BFGS with inf norm, print inf norm of jacobina, not 2 norm.
The file was modified TransportMaps/Maps/TriangularTransportMapBase.py (diff)
The file was modified Examples/research/SparseGridAdaptivity/StochasticVolatility/StochasticVolatility-run.py (diff)
Commit 87459ed6289c43ed952c399d349a4c9577afe78b by joshuawchen
working on SV. Try ½ solve tol to start with. ½ each time. set a minimum
val for refinement (otherwise wasteful).
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
Commit 7bdc0e27381cdbaa0628a1cb575ad98cfb0d27dc by joshuawchen
Informative printing of info, revert to 1/10 solve_tol, seems to work.
better.
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was addedExamples/research/SparseGridAdaptivity/StochasticVolatility/MCStochasticVolatility-run.py
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
Commit 53d5bd878fcc35fb4522ad74edd733f56fc3ecf0 by dabi
working on sv tests for talk
The file was modified TransportMaps/Diagnostics/Routines.py (diff)
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
The file was modified Examples/research/SparseGridAdaptivity/StochasticVolatility/StochasticVolatility-run.py (diff)
The file was modified TransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
Commit c760a7a8681079d7f14db74fc03761ee495e6f47 by dabi
figures generated for Josh talk
The file was modified Examples/research/SparseGridAdaptivity/StochasticVolatility/MCStochasticVolatility-run.py (diff)
The file was modified Examples/research/SparseGridAdaptivity/StochasticVolatility/StochasticVolatility-run.py (diff)
The file was modified TransportMaps/Diagnostics/Routines.py (diff)
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was modified TransportMaps/Functionals/LinearSpanApproximationBase.py (diff)
The file was addedExamples/research/SparseGridAdaptivity/StochasticVolatility/StochasticVolatilityPlots.py
The file was removedExamples/research/SparseGridAdaptivity/StochasticVolatility/StochastivVolatilityPlots.py
The file was modified TransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
Commit 82d0aae3b33b3776bbbb3e1aed6e3d4747b87e5b by joshuawchen
update poisson example for newer versions of fenics
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was addedExamples/research/SparseGridAdaptivity/Poisson/poisson-run.py
The file was modified Examples/research/SparseGridAdaptivity/Poisson/PoissonDistributions.py (diff)
The file was modified Examples/research/SparseGridAdaptivity/Poisson/GaussianFieldDataGeneration.py (diff)
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was modified Examples/research/SparseGridAdaptivity/Poisson/poisson-run.py (diff)
Commit 94071069e12fa0e1ad8ad114f02de0c7755108e6 by dabi
Fixed Poisson problem set up in SG adaptivity
The file was modified Examples/research/SparseGridAdaptivity/Poisson/PoissonDistributions.py (diff)
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
The file was modified Examples/research/SparseGridAdaptivity/Poisson/poisson-run.py (diff)
The file was modified TransportMaps/Distributions/TransportMapDistributions.py (diff)
The file was modified Examples/research/EIT/NoElectrode/NoElectrodeEITDistributions.py (diff)
The file was modified TransportMaps/Likelihoods/LikelihoodBase.py (diff)
Commit f3941d1e48578a97e64c00280179d5da4c563192 by dabi
made DARKSparK and optional External package
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was modified TransportMaps/External.py (diff)
The file was modified TransportMaps/Diagnostics/Routines.py (diff)
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
Commit 7f6792bd36ff5263fe81376fe639609438fef340 by dabi
mpi works on the poisson example
The file was modified Examples/research/SparseGridAdaptivity/Poisson/poisson-run.py (diff)
Commit 598ed8b430d8d9077506edf37b47e87968f18955 by dabi
cleaning up poisson problem to be included to the available
distributions
The file was modified Examples/research/SparseGridAdaptivity/Poisson/PoissonDistributions.py (diff)
Commit 87b15653dac47c1b0fff8bff4a25989c974fee68 by dabi
working on general setting of PDE problems with FENICS
The file was modified Examples/research/SparseGridAdaptivity/Poisson/PoissonDistributions.py (diff)
The file was modified Examples/research/SparseGridAdaptivity/Poisson/PoissonDistributions.py (diff)
The file was modified Examples/research/SparseGridAdaptivity/Poisson/PoissonDistributions.py (diff)
The file was addedExamples/research/SparseGridAdaptivity/Poisson/PoissonProblems.py
Commit 145b033108ca189e36883719dd849d709220f9dc by dabi
almost done with the Poisson setting
The file was modified TransportMaps/Distributions/Examples/__init__.py (diff)
The file was removedExamples/research/SparseGridAdaptivity/Poisson/PoissonDistributions.py
The file was modified Examples/research/SparseGridAdaptivity/Poisson/whiten.py (diff)
The file was modified Examples/research/SparseGridAdaptivity/Poisson/GaussianFieldDataGeneration.py (diff)
The file was addedTransportMaps/Distributions/Examples/PoissonProblem/__init__.py
The file was removedExamples/research/SparseGridAdaptivity/Poisson/PoissonProblems.py
The file was addedTransportMaps/Distributions/Examples/PoissonProblem/PoissonProblems.py
The file was addedTransportMaps/Distributions/Examples/PoissonProblem/PoissonDistributions.py
The file was modified TransportMaps/External.py (diff)
Commit 1d3455beacf54ffe321b6e7fe49f715b78b273f2 by dabi
added LinearTriangularMap for fast regression (nested Cholesky)
The file was removedExamples/research/SparseGridAdaptivity/Poisson/whiten.py
The file was addedExamples/research/PoissonProblem/whiten.py
The file was modified TransportMaps/Distributions/Examples/PoissonProblem/PoissonProblems.py (diff)
The file was addedExamples/research/MonotoneTransport-paper/Poisson/poisson-run.py
The file was modified scripts/tmap-tm (diff)
The file was modified TransportMaps/Maps/FullTransportMaps.py (diff)
The file was addedTransportMaps/Maps/LinearMaps.py
The file was removedExamples/research/SparseGridAdaptivity/Poisson/GaussianFieldDataGeneration.py
The file was modified TransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
The file was modified TransportMaps/Distributions/Examples/PoissonProblem/PoissonDistributions.py (diff)
The file was addedExamples/research/PoissonProblem/GaussianFieldDataGeneration.py
The file was modified TransportMaps/Maps/__init__.py (diff)
Commit 66349010777d807690baad4416d3a46b63203b86 by dabi
working on setting for Poisson problem
The file was modified scripts/tmap-tm (diff)
The file was modified Examples/research/PoissonProblem/GaussianFieldDataGeneration.py (diff)
The file was modified TransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
Commit edac3160c54d780a0a19451a2d7e29978f1f1115 by dabi
working on Poisson
The file was addedExamples/research/MonotoneTransport-paper/Poisson/postprocess.py
The file was addedExamples/research/MonotoneTransport-paper/Poisson/runner-eig.sh
The file was addedExamples/research/MonotoneTransport-paper/Poisson/postprocess.sh
The file was modified TransportMaps/Distributions/Examples/PoissonProblem/PoissonDistributions.py (diff)
Commit e5aa10c9fb448261450bd262d7580d02636534f6 by dabi
added the bootstrap validator and changed arguments on error_estimation
and refinement functions of the validators
The file was modified TransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
The file was modified TransportMaps/Maps/TransportMapBase.py (diff)
The file was modified Examples/research/MonotoneTransport-paper/Poisson/runner-eig.sh (diff)
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
Commit c8f3d7255d859c81f8eae5312e861c3cca2cf764 by dabi
added bootstrap option to tmap-tm
The file was modified scripts/tmap-tm (diff)
The file was modified TransportMaps/CLI/AvailableOptions.py (diff)
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
Commit 00b29547c390af6e4d799173f5c102c35ab25564 by dabi
working on the bootstrap validator
The file was modified TransportMaps/Maps/TransportMapBase.py (diff)
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was modified TransportMaps/__init__.py (diff)
The file was modified Examples/research/MonotoneTransport-paper/Poisson/runner-eig.sh (diff)
The file was modified TransportMaps/Maps/TriangularTransportMapBase.py (diff)
The file was modified scripts/tmap-tm (diff)
The file was modified Examples/research/MonotoneTransport-paper/BOD/BODrun.py (diff)
The file was modified Examples/research/PoissonProblem/GaussianFieldDataGeneration.py (diff)
Commit e2bcfec598f21bc876d2d486a8052765bcb55c57 by dabi
changed the stopping criterion for the bootstrap validator
The file was modified Examples/research/MonotoneTransport-paper/Poisson/runner-eig.sh (diff)
The file was modified TransportMaps/Maps/TriangularTransportMapBase.py (diff)
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was modified TransportMaps/Maps/TransportMapBase.py (diff)
Commit 89bee31cd02e2b783b631222ff5972693fcaf2f4 by dabi
polishing adaptivity
The file was modified Examples/research/MonotoneTransport-paper/Poisson/runner-eig.sh (diff)
The file was modified TransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
The file was modified scripts/tmap-tm (diff)
The file was modified TransportMaps/Maps/TransportMapBase.py (diff)
Commit fa711a3a4bdbc2d337f8b139c3d1659678dc3978 by dabi
fixing coefficients update and cache usage in first variation
The file was modified TransportMaps/tests/test_L2_misfit.py (diff)
The file was modified Examples/research/MonotoneTransport-paper/Banana/BananaPlots.py (diff)
The file was modified TransportMaps/Routines.py (diff)
The file was modified TransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
The file was modified TransportMaps/Maps/TriangularTransportMaps.py (diff)
The file was modified TransportMaps/Maps/TriangularTransportMapBase.py (diff)
The file was modified scripts/tmap-tm (diff)
The file was modified TransportMaps/tests/test_kl_divergence.py (diff)
The file was modified requirements-MPI.txt (diff)
The file was modified TransportMaps/Misc.py (diff)
The file was modified TransportMaps/Functionals/MonotonicFunctionApproximations.py (diff)
The file was modified TransportMaps/Algorithms/Adaptivity/RegressionAdaptivity.py (diff)
The file was modified setup.py (diff)
Commit 79ecfc0ee99802803a3cde7c3d6d1ba71726cc85 by dabi
added better estimation of points multiplier for bootstrap validator
The file was modified Examples/research/MonotoneTransport-paper/Poisson/runner-eig.sh (diff)
The file was modified TransportMaps/Diagnostics/Plotting.py (diff)
The file was modified TransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
The file was modified scripts/tmap-tm (diff)
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was modified Examples/research/MonotoneTransport-paper/Banana/BananaPlots.py (diff)
Commit 2c48cca161efe802429a72c27fccc1d91a35becb by dabi
working on randomized approximation of Hessian for Laplace approximation
The file was modified TransportMaps/LaplaceApproximationRoutines.py (diff)
The file was modified scripts/tmap-tm (diff)
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was modified TransportMaps/RandomizedLinearAlgebra/RandomizedLinearAlgebra.py (diff)
The file was modified Examples/research/MonotoneTransport-paper/Poisson/runner-eig.sh (diff)
The file was modified TransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
The file was modified TransportMaps/Misc.py (diff)
Commit 99e7c8a8b09ffc5f19fff4925facbe50f6f9edb2 by dabi
randomized_direct_svd works
The file was modified TransportMaps/tests/test_rla.py (diff)
The file was modified TransportMaps/RandomizedLinearAlgebra/RandomizedLinearAlgebra.py (diff)
Commit 3bbb14633bdcd823d449f863a31927520f5bc5f1 by dabi
randomized svd is consistent with eigenvalue decomposition
The file was modified TransportMaps/Routines.py (diff)
The file was modified TransportMaps/tests/test_rla.py (diff)
The file was modified TransportMaps/LaplaceApproximationRoutines.py (diff)
The file was modified TransportMaps/RandomizedLinearAlgebra/RandomizedLinearAlgebra.py (diff)
The file was modified scripts/tmap-laplace (diff)
The file was modified TransportMaps/tests/test_laplace.py (diff)
Commit a40d203dcb3497d1614e50356886b68d809c1839 by dabi
low-rank laplace work with outer gradients and low-rank hessian
The file was modified TransportMaps/tests/test_laplace.py (diff)
The file was modified TransportMaps/LaplaceApproximationRoutines.py (diff)
Commit 4244349c5accadbdd703ca886d5b4e8bfc66a447 by dabi
implementing likelihood informed subspace procedure
The file was modified TransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
The file was modified TransportMaps/LaplaceApproximationRoutines.py (diff)
The file was modified TransportMaps/Misc.py (diff)
The file was modified TransportMaps/Maps/FullTransportMaps.py (diff)
The file was modified scripts/tmap-laplace (diff)
The file was modified TransportMaps/Diagnostics/Validators.py (diff)
The file was modified Examples/research/MonotoneTransport-paper/Poisson/runner-eig.sh (diff)
The file was modified TransportMaps/Maps/TransportMapBase.py (diff)
Commit f0e2d8e4430db45b92cf23676e4f1216cd84cd42 by dabi
working on Laplace approximation with lis in the head of the square root
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
The file was modified TransportMaps/LaplaceApproximationRoutines.py (diff)
Commit e1f2282ad7f3b7a9a0f76fa91e128d3984ec24ed by dabi
added option lis on tmap-laplace. LinearTransportMaps and
GaussianDistributions should be re-implemented accordingly to issue #88
The file was modified TransportMaps/LaplaceApproximationRoutines.py (diff)
The file was modified TransportMaps/Maps/FullTransportMaps.py (diff)
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
The file was modified scripts/tmap-laplace (diff)