Changes

#20 (Dec 3, 2019, 12:25:47 PM)

1. fixed documentation — dabi / bitbucketweb
2. gumbel example re-run for documentation — dabi / bitbucketweb
3. fix committed for mpi with inverse from samples. The mpi_pool is not attached to objects anymore (so that it will be never serialized), but passed along with parameters — dabi / bitbucketweb
4. additional fixes — dabi / bitbucketweb

#19 (Mar 31, 2019, 1:22:33 PM)

1. fixed documentation — dabi / bitbucketweb
2. gumbel example re-run for documentation — dabi / bitbucketweb
3. fix committed for mpi with inverse from samples. The mpi_pool is not attached to objects anymore (so that it will be never serialized), but passed along with parameters — dabi / bitbucketweb
4. additional fixes — dabi / bitbucketweb

#18 (Aug 2, 2018, 12:47:24 PM)

1. checked inverse gumbel tutorial — dabi / bitbucketweb
2. updated version — dabi / bitbucketweb

#17 (Aug 2, 2018, 11:04:08 AM)

1. fixed direct construction tutorial — dabi / bitbucketweb

#16 (Aug 1, 2018, 10:12:38 AM)

1. fixing bugs in tutorial examples — dabi / bitbucketweb
2. in the process of fixing documentation. Todo: sequential stochastic — dabi / bitbucketweb

#14 (Jun 12, 2018, 11:11:37 AM)

1. generalized input arguments to ParametricDistriubtion, so that calls can — dabi / bitbucketweb
2. generalized input arguments to ParametricDistriubtion, so that calls can — dabi / bitbucketweb

#13 (Jun 6, 2018, 5:55:47 PM)

1. fixed last fix... — dabi / bitbucketweb

#12 (Jun 6, 2018, 3:15:26 PM)

1. example on Gumbel 1d — rsb / bitbucketweb
2. started with the Helmholtz equation — dabi / bitbucketweb
3. integrated SING into TransportMaps — rebeccae.morrison / bitbucketweb
4. cleaning SING files — rebeccae.morrison / bitbucketweb
5. l1 tests and plotting scripts — rebeccae.morrison / bitbucketweb
6. working on Helmholtz example from Ghattas' paper — dabi / bitbucketweb
7. working on Helmholtz — dabi / bitbucketweb
8. starting to work on actual probabilistic model — dabi / bitbucketweb
9. renaming some sun_sing files — rebeccae.morrison / bitbucketweb
10. updating run_sing files to run with SI.SING — rebeccae.morrison / bitbucketweb
11. actually updating to run with SI.SING (ignore last commit) — rebeccae.morrison / bitbucketweb
12. testing l1 — rebeccae.morrison / bitbucketweb
13. l1 regularization — rebeccae.morrison / bitbucketweb
14. Updated regularized map - SING now runs with 2 types of reg and no reg. — rsb / bitbucketweb
15. relaxed rademacher, butterfly distribution, and more properties of — rebeccae.morrison / bitbucketweb
16. relaxed rademacher uses uniform over (-1,1), not (0,1) — rebeccae.morrison / bitbucketweb
17. node ordering fix — rebeccae.morrison / bitbucketweb
18. changing parameters in Helmholtz — dabi / bitbucketweb
19. added stub solver for EIT problem — dabi / bitbucketweb
20. working on surface gradient — dabi / bitbucketweb
21. working on CEM — dabi / bitbucketweb
22. fixed EIT working on CEM — dabi / bitbucketweb
23. plotting scripts for nips — rebeccae.morrison / bitbucketweb
24. turned hessian off in sing — rebeccae.morrison / bitbucketweb
25. mc studies 1step algs — rsb / bitbucketweb
26. More MC Studies for SING — rsb / bitbucketweb
27. working on models — dabi / bitbucketweb
28. No electrodes model works — dabi / bitbucketweb
29. working on discretized model — dabi / bitbucketweb
30. working on discretized model — dabi / bitbucketweb
31. gmsh mesh generation for discretized test — dabi / bitbucketweb
32. working on complete model — dabi / bitbucketweb
33. starting to work on adjoint equations — dabi / bitbucketweb
34. messed up with no-electrodes model.. — dabi / bitbucketweb
35. working on fast sensor function — dabi / bitbucketweb
36. fixed sensor expression — dabi / bitbucketweb
37. working on Dirichlet to Neumann model — dabi / bitbucketweb
38. working on adjoint for no electrode model — dabi / bitbucketweb
39. adjoint done — dabi / bitbucketweb
40. gradient and Hessian working — dabi / bitbucketweb
41. setting up the posterior distribution — dabi / bitbucketweb
42. working on likelihood functions — dabi / bitbucketweb
43. working on posterior distribution — dabi / bitbucketweb
44. storage/loading of distribution works — dabi / bitbucketweb
45. working on action of Hessian — dabi / bitbucketweb
46. working on action_hess_a for transport map distributions — dabi / bitbucketweb
47. working on minimization of kl divergence using action of the Hessian — dabi / bitbucketweb
48. working on kl minimization tests — dabi / bitbucketweb
49. unit tests are passing. todo: caching in Likelihood to avoid extra — dabi / bitbucketweb
50. the distribution object is now pre-broadcasted to the children in — dabi / bitbucketweb
51. fixed test_kl_divergence — dabi / bitbucketweb
52. working on caching of Likelihood evaluations — dabi / bitbucketweb
53. fixed init function — dabi / bitbucketweb
54. The action of the Hessian is ready. Fixes #31. Caching issues reserved — dabi / bitbucketweb
55. introducing cached and counted decorators — dabi / bitbucketweb
56. adding counting output — dabi / bitbucketweb
57. caching to be finished in TransportMaps and Maps in general. Then I need — dabi / bitbucketweb
58. still working on maps... — dabi / bitbucketweb
59. working on distributions — dabi / bitbucketweb
60. testing caching. todo: caching in optimization problems — dabi / bitbucketweb
61. added caching and counting wherever needed (maybe missing some spots). — dabi / bitbucketweb
62. working on caching in Hessian. Todo: update and run unittests — dabi / bitbucketweb
63. adding reset counters functionalities — dabi / bitbucketweb
64. counting and resetting works. Caching also seems to work. TODO: — dabi / bitbucketweb
65. caching does what is supposed to do! — dabi / bitbucketweb
66. added manual test for caching and counting — dabi / bitbucketweb
67. working on caching minimization routine — dabi / bitbucketweb
68. working on unit tests for kl-divergence — dabi / bitbucketweb
69. working on test_kl_divergence.py — dabi / bitbucketweb
70. fixing  an error at a time... — dabi / bitbucketweb
71. kl_min tests work! — dabi / bitbucketweb
72. fixing all unit tests — dabi / bitbucketweb
73. porting MPI implementation to mpi_map v2.0 — dabi / bitbucketweb
74. porting to mpi_map v2.0 completed. ToBeTested!! — dabi / bitbucketweb
75. mpi_map v2 integrated and passing unit tests — dabi / bitbucketweb
76. gathering of ncalls and nevals count at the end of optimization done — dabi / bitbucketweb
77. passes unit tests — dabi / bitbucketweb
78. now pointing to MPI_Pool_v2 in mpi_map v2.0 — dabi / bitbucketweb
79. returning latest cache within log dictionary — dabi / bitbucketweb
80. fixed py2/py3 issue with cached decorator — dabi / bitbucketweb
81. fixed py2/py3 issue with cached decorator — dabi / bitbucketweb
82. fixed py2/py3 issue with cached decorator — dabi / bitbucketweb
83. fixing py2/py3 handling of *args and **kwargs (PEP3102) — dabi / bitbucketweb
84. working on target distribution — dabi / bitbucketweb
85. working on mpi evaluation of target density — dabi / bitbucketweb
86. working on constant field data generation and parallel implementation — dabi / bitbucketweb
87. working on speeding up function and gradient evaluatiions — dabi / bitbucketweb
88. implemented fungrad — dabi / bitbucketweb
89. working of action of Hessian — dabi / bitbucketweb
90. mpi implementation not working... — dabi / bitbucketweb
91. staring solving simple problems.. — dabi / bitbucketweb
92. working on constant field problem and parallelization — dabi / bitbucketweb
93. working on the problem set up — dabi / bitbucketweb
94. data generation for constant field works — dabi / bitbucketweb
95. working on adjoint for field — dabi / bitbucketweb
96. fixed gradient! — dabi / bitbucketweb
97. working on Hessian of EIT problem — dabi / bitbucketweb
98. working on hessian — dabi / bitbucketweb
99. fixed counter reset in some classes — dabi / bitbucketweb
100. fixing regularization — dabi / bitbucketweb
101. fixed caching for tuple_grad_a — dabi / bitbucketweb
102. fixed some issues with tests and new counting decorators — dabi / bitbucketweb
103. action of the Hessian for EIT works. To be integrated in distribution — dabi / bitbucketweb
104. eit hessian works with caching of solution and adjoints — dabi / bitbucketweb
105. EIT field distribution works with MPI — dabi / bitbucketweb
106. added possibility to add real fields by expression — dabi / bitbucketweb
107. disabled plotting if not available — dabi / bitbucketweb
108. distributions work on cluster — dabi / bitbucketweb
109. made EIT solver into a class — dabi / bitbucketweb
110. working on validators — dabi / bitbucketweb
111. working on saa — dabi / bitbucketweb
112. implementing gradient based validators — dabi / bitbucketweb
113. validators... — dabi / bitbucketweb
114. working on adaptivity algorithm — dabi / bitbucketweb
115. working on the adaptivity algorithm — dabi / bitbucketweb
116. adding adaptivity options to tmap-tm — dabi / bitbucketweb
117. working on launching script tmap-tm — dabi / bitbucketweb
118. changing builder classes to imbed parameters and take distributions on — dabi / bitbucketweb
119. going through banana example — dabi / bitbucketweb
120. working on adaptivity on banana — dabi / bitbucketweb
121. adaptivity on banana almost work — dabi / bitbucketweb
122. adaptivity works on banana. a lot to do yet... — dabi / bitbucketweb
123. improving parallelization — dabi / bitbucketweb
124. splitted first variation computation for better parallelization — dabi / bitbucketweb
125. adaptivity works on banana without hyper — dabi / bitbucketweb
126. working on low-rank approximation of Hessians — dabi / bitbucketweb
127. working on laplace approximation for Bayesian inverse problems, where — dabi / bitbucketweb
128. working on low-rank approximation of covariance in bayesian problem — dabi / bitbucketweb
129. working on low-rank approximation — dabi / bitbucketweb
130. added logging information in postprocessing script — dabi / bitbucketweb
131. low-rank Laplace approximation works — dabi / bitbucketweb
132. applying Laplace to EIT — dabi / bitbucketweb
133. working on composition of Likelihood with maps — dabi / bitbucketweb
134. working on composition of Likelihood with maps — dabi / bitbucketweb
135. composition of functions and map now is possible. working on laplace of — dabi / bitbucketweb
136. working on laplace approximation of EIT — dabi / bitbucketweb
137. debugging action of Hessian — dabi / bitbucketweb
138. checking hessian action.. — dabi / bitbucketweb
139. working on finite difference test for Hessian — dabi / bitbucketweb
140. checking Hessian for distribution — dabi / bitbucketweb
141. fixed withening script. Now action of Hessian works with MPI — dabi / bitbucketweb
142. working on EIT adaptivity — dabi / bitbucketweb
143. added missing functions to LinearTransportMap. Added unit tests for it — dabi / bitbucketweb
144. modified caching of EIT solutions so that the cache is now pickable. — dabi / bitbucketweb
145. added verbosity option in adaptivity algorithms and fixed bug in action — dabi / bitbucketweb
146. added intermediate storage capability for adaptivity — dabi / bitbucketweb
147. added output for lower and upper bounds in saa — dabi / bitbucketweb
148. fixed bug in tmap-tm and in test_distribution.py for EIT — dabi / bitbucketweb
149. added distributed sampling for MC sampling in minimize_kl_divergence — dabi / bitbucketweb
150. fixed sampling for inverse maps from samples (disabled distributed — dabi / bitbucketweb
151. fixed distributed sampling for linear span kl minimization — dabi / bitbucketweb
152. fixed action Hessian with regularization — dabi / bitbucketweb
153. simplified regularization of action hessian regularization — dabi / bitbucketweb
154. fixed relative tolerance in validator — dabi / bitbucketweb
155. fixed relative tolerance in validator — dabi / bitbucketweb
156. remove unnecessary output form EIT — dabi / bitbucketweb
157. changed active variable indicator to E[|x|] — dabi / bitbucketweb
158. tryna generate non-gaussian data — rebeccae.morrison / bitbucketweb
159. working on reload feature for tmap-tm — dabi / bitbucketweb
160. reloading done for first variation adaptivity. to be checked in other — dabi / bitbucketweb
161. added some output to First variation algorithm — dabi / bitbucketweb
162. fixed restarting and grad_x for target in EIT — dabi / bitbucketweb
163. added field full_basis_list to function approximations, to be used in — dabi / bitbucketweb
164. fixed adaptivity accordingly to previous full_basis_list at the function — dabi / bitbucketweb
165. running aerostruct and copula data — rebeccae.morrison / bitbucketweb
166. committing data samples for copula data — rebeccae.morrison / bitbucketweb
167. fixed first variation computation — dabi / bitbucketweb
168. added plot sample for post process in EIT — dabi / bitbucketweb
169. added a non-gaussian chain dataset — rebeccae.morrison / bitbucketweb
170. added full_basis_list feature to xml map structure loading — dabi / bitbucketweb
171. fixed full_basis_list to save in memory allocation — dabi / bitbucketweb
172. minor testing datasets changes — rebeccae.morrison / bitbucketweb
173. check for product distribution — rebeccae.morrison / bitbucketweb
174. removed matplotlib from imports — rebeccae.morrison / bitbucketweb
175. scikit-sparse reqs — rebeccae.morrison / bitbucketweb
176. changed googleanalytics requirements — dabi / bitbucketweb
177. starting jupyter notebook for sing — rebeccae.morrison / bitbucketweb
178. looking at copula data inverse covariance — rebeccae.morrison / bitbucketweb
179. working on coarser test case — dabi / bitbucketweb
180. fixed several bugs in adaptivity and tests — dabi / bitbucketweb
181. fixed get state in first variation builder — dabi / bitbucketweb
182. added line search options in tmap-tm — dabi / bitbucketweb
183. fixed kladaptivity serialization and regression regularization — dabi / bitbucketweb
184. fixed gx_gt_kl batched evaluation — dabi / bitbucketweb
185. added sing notebook example — rebeccae.morrison / bitbucketweb
186. fixing adaptivity here and there.. — dabi / bitbucketweb
187. integrated documentation for SING algorithm — dabi / bitbucketweb
188. added postprocessing functionalities for adaptivity — dabi / bitbucketweb
189. added double circle phantom — dabi / bitbucketweb
190. fixed store function in tmap-tm — dabi / bitbucketweb
191. added argument for line search delta — dabi / bitbucketweb
192. added delta parameter for line search — dabi / bitbucketweb
193. fixed documentation SING — dabi / bitbucketweb
194. fixing unit tests; — dabi / bitbucketweb
195. fixed laplace approximation starting point — dabi / bitbucketweb
196. documenting fv adaptivity — dabi / bitbucketweb
197. preparing release v2.0b0 — dabi / bitbucketweb
198. v2.0b0: ready for unit-testing — dabi / bitbucketweb
199. fixed matplotlib dependence — dabi / bitbucketweb
200. fixed process_time PyV3 PyV2 — dabi / bitbucketweb
201. fixed processtime name — dabi / bitbucketweb
202. fixing bugs for release — dabi / bitbucketweb
203. working to fix grax_gradt_kl — dabi / bitbucketweb
204. fixed grad_x of first variation — dabi / bitbucketweb
205. subtract identity_coeffs + l1_reg to component kl — rsb / bitbucketweb
206. removed dependency on FileNotFoundError for compatibility with py2 — dabi / bitbucketweb
207. fixed compatibility issue with py2 — dabi / bitbucketweb
208. removed unnecessary folders in Examples and updated mirroring script — dabi / bitbucketweb
209. added algorithms documentation section — dabi / bitbucketweb
210. updated script for public mirroring — dabi / bitbucketweb
211. throwing an error if ders!=[0,1] used in decoupled LinearSpan min_kl — dabi / bitbucketweb

#8 (Jan 9, 2018, 3:28:40 PM)

1. conditional import of h5py in postprocess scripts — dabi / bitbucketweb
2. fixed bug in usage of einsum due to update to numpy >= 1.14 — dabi / bitbucketweb

#6 (Dec 13, 2017, 9:51:44 PM)

1. working on slurm submission — dabi / bitbucketweb
2. fixed tensordot in integrated squared. This saves memory and improves — dabi / bitbucketweb
3. modified runner — dabi / bitbucketweb
4. done with plots for the paper! — dabi / bitbucketweb
5. fixed plotting for 9000 steps — dabi / bitbucketweb
6. working on documentation of published data — dabi / bitbucketweb
7. done with documentation of results 945. Working on 9009 steps — dabi / bitbucketweb
8. adding results 9009 steps on documentation — dabi / bitbucketweb
9. added data and figures 9009 steps — dabi / bitbucketweb
10. postprocessing script now adding events on time series — dabi / bitbucketweb
11. done with documentation. todo: fix unittests — dabi / bitbucketweb
12. added cython dependency for pyhmc — dabi / bitbucketweb
13. attempt to fix pyhmc dependencies... — dabi / bitbucketweb
14. pyhmc is now optional — dabi / bitbucketweb
15. fixed external import in Samplers — dabi / bitbucketweb
16. fixed test_L2_misfit and test_scripts — dabi / bitbucketweb
17. fixed MarkovOneCompoent in test_distributions — dabi / bitbucketweb
18. fixed (1) test L2_min for integrated squared (2) sequential inference — dabi / bitbucketweb
19. fixed import of mpi_map — dabi / bitbucketweb
20. reduced order in test non linear sequential inference — dabi / bitbucketweb
21. updated documentation with optional requirement of pyhmc — dabi / bitbucketweb
22. removed Docs form MANIFEST.in — dabi / bitbucketweb
23. fixed gradient and hessian of inverse exponential map — dabi / bitbucketweb

#5 (Nov 19, 2017, 7:15:15 AM)

1. fixed typo in documentation data-assimilation — dabi / bitbucketweb
2. fixed typo on data-assimialtion model example — dabi / bitbucketweb

#4 (Nov 19, 2017, 7:11:42 AM)

1. added a postprocess for the stochastic volatility. To be moved in the — dabi / bitbucketweb
2. working on figures for poster — dabi / bitbucketweb
3. working on last figures — dabi / bitbucketweb
4. improved post-process for stochastic volatility. TODO: restructure all — dabi / bitbucketweb
5. satellite changes — rebeccae.morrison / bitbucketweb
6. dont need to append to log — rebeccae.morrison / bitbucketweb
7. updated public mirror link — dabi / bitbucketweb
8. updated public mirror link — dabi / bitbucketweb
9. updated mirroring script — dabi / bitbucketweb
10. updated mirroring script — dabi / bitbucketweb
11. jenkins scripts and mirroring scripts — dabi / bitbucketweb
12. shortened mpi-lag — dabi / bitbucketweb
13. mirroring script update — dabi / bitbucketweb
14. added requirements files and updated test-testpypi script — dabi / bitbucketweb
15. updated manifest — dabi / bitbucketweb
16. updated mirroring script — dabi / bitbucketweb
17. updated testpypi script — dabi / bitbucketweb
18. added google analytics — dabi / bitbucketweb
19. prepared Jenkins test-pypi script and updated to version v1.0b1 — dabi / bitbucketweb
20. prepared pypi-upload script — dabi / bitbucketweb
21. updated classifiers — dabi / bitbucketweb
22. updated permissions test-pypi — dabi / bitbucketweb
23. added archiving option to mirroring script and removal of ol public — dabi / bitbucketweb
24. updated website and readme — dabi / bitbucketweb
25. fixing api — dabi / bitbucketweb
26. completed web-site — dabi / bitbucketweb
27. modified upload script to accomodate for bakups — dabi / bitbucketweb
28. updated version on conf file — dabi / bitbucketweb
29. updated requirements file — dabi / bitbucketweb
30. updated installation procedure and added toggle sections — dabi / bitbucketweb
31. updated sphinx requirements — dabi / bitbucketweb
32. updated docs MonotLinSpanApprox and increased size UML diagrams — dabi / bitbucketweb
33. bug fixed in grad_a_hess_x_log_det_grad_x, matrix slots matplotlib files — rebeccae.morrison / bitbucketweb
34. updated documentation — dabi / bitbucketweb
35. updating documentation — dabi / bitbucketweb
36. improved slides for BOD example — dabi / bitbucketweb
37. updated bod with figures and stochastic volatility — dabi / bitbucketweb
38. imporved upload script and fixed visualization problem in bod — dabi / bitbucketweb
39. working on railway model — dabi / bitbucketweb
40. working on railway model — dabi / bitbucketweb
41. model to be fixed (unstable) — dabi / bitbucketweb
42. model unstable.... — dabi / bitbucketweb
43. the simpler model works — dabi / bitbucketweb
44. random disturbance works — dabi / bitbucketweb
45. redesigned model structure — dabi / bitbucketweb
46. refactoring the inference algorithms — dabi / bitbucketweb
47. fixes #76 — rebeccae.morrison / bitbucketweb
48. working on linear filter/smoothers — dabi / bitbucketweb
49. modified tolerances — dabi / bitbucketweb
50. working on linear Gaussian transition distributions — dabi / bitbucketweb
51. working on Linear filter/smoother — dabi / bitbucketweb
52. working on conditional probabilities — dabi / bitbucketweb
53. working on factorized distributions — dabi / bitbucketweb
54. factorized distribution works — dabi / bitbucketweb
55. independent likelihood added — dabi / bitbucketweb
56. working on stochastic volatility test case — dabi / bitbucketweb
57. derivatives of stoc vol works. TODO: fix the Markov components — dabi / bitbucketweb
58. working on markov components — dabi / bitbucketweb
59. working on hessian of markov component... — dabi / bitbucketweb
60. fixed hessian for markov component and checked stoch vol example works — dabi / bitbucketweb
61. working on statistical models — dabi / bitbucketweb
62. working on distribution docs — dabi / bitbucketweb
63. moved FactorizedDistribution to DistributionBase — dabi / bitbucketweb
64. working on loglikelihoods — dabi / bitbucketweb
65. Additive models and addive linear Gaussian models added in the — dabi / bitbucketweb
66. made a dedicated submodule for likelihoods — dabi / bitbucketweb
67. moved likelihoods out of functionals (more intuitive) — dabi / bitbucketweb
68. working on linear inertial navigation system model — dabi / bitbucketweb
69. working on assimilation example — dabi / bitbucketweb
70. fixing markov component — dabi / bitbucketweb
71. ok tests markov component — dabi / bitbucketweb
72. AR1TransDistr works — dabi / bitbucketweb
73. done with data assimilation construction example — dabi / bitbucketweb
74. Updated version: v1.0b2 — dabi / bitbucketweb
75. added missing files and removed api-files which must be automatically — dabi / bitbucketweb
76. updated ignore file — dabi / bitbucketweb
77. fixing import issue — dabi / bitbucketweb
78. fixing import issue — dabi / bitbucketweb
79. working on Kalman filter — dabi / bitbucketweb
80. setting up the INS example in order to run the Kalman filter on it... — dabi / bitbucketweb
81. working on linear smoother — dabi / bitbucketweb
82. working on linear smoother — dabi / bitbucketweb
83. fixing the smoothing... — dabi / bitbucketweb
84. linear smoother works. Figure out how to quickly get state covariances — dabi / bitbucketweb
85. smoothing covariances work. Now working on smoothing means — dabi / bitbucketweb
86. working on postprocess smoothing with different lags — dabi / bitbucketweb
87. fixed lag smoother works — dabi / bitbucketweb
88. refactored all references to old smoother/filters — dabi / bitbucketweb
89. working on distribution for filtering — dabi / bitbucketweb
90. working on railway vehicle example — dabi / bitbucketweb
91. working on linear filtering — dabi / bitbucketweb
92. fixed computation of square root for almost singular covariances in — dabi / bitbucketweb
93. fixed computation of square root for almost singular covariances in — dabi / bitbucketweb
94. working on example — dabi / bitbucketweb
95. working on parametric Railway model — dabi / bitbucketweb
96. working on linear model with hyper-parameters — dabi / bitbucketweb
97. working on linear models with hyper-parameters — dabi / bitbucketweb
98. working on ... — dabi / bitbucketweb
99. working on parametric distributions and transition densities — dabi / bitbucketweb
100. working on gradient of Kalman filter — dabi / bitbucketweb
101. in a maze of einsums... — dabi / bitbucketweb
102. working on gradients vehicle model — dabi / bitbucketweb
103. working on gradients for transition matrices — dabi / bitbucketweb
104. the gradient does not work... — dabi / bitbucketweb
105. working on gradients!! — dabi / bitbucketweb
106. added notebook py file — dabi / bitbucketweb
107. fixed coeff properties and working on gradient of linear filter... — dabi / bitbucketweb
108. Fixed the gradients (sensitivities) of the linear filter!!!! — dabi / bitbucketweb
109. working on parameter estimation problem — dabi / bitbucketweb
110. Fixes #77. Implemented function/gradient evaluation and minimization — dabi / bitbucketweb
111. now optimization is done with function/gradient function — dabi / bitbucketweb
112. working on data generation and higher dimensional cases — dabi / bitbucketweb
113. added fungrad option on scripts — dabi / bitbucketweb
114. fixing some unittest errors — dabi / bitbucketweb
115. this could all be wasted time.. — dabi / bitbucketweb
116. brancolando nel buio... — dabi / bitbucketweb
117. making progress??? — dabi / bitbucketweb
118. same change done on ConditionallyGaussianDistribution should be done on — dabi / bitbucketweb
119. wrapping up on railways 1d — dabi / bitbucketweb
120. going on with 1d — dabi / bitbucketweb
121. working again on gradient marginal loglikelihood — dabi / bitbucketweb
122. fixed marginal log likelihood!!! — dabi / bitbucketweb
123. fixing for tests — dabi / bitbucketweb
124. working on scripts for high-dimensional problem... — dabi / bitbucketweb
125. fixing unit tests — dabi / bitbucketweb
126. modified BOD example to show marginals — dabi / bitbucketweb
127. some updates on tutorial — dabi / bitbucketweb
128. working on new figs for paper with up-to-date software — dabi / bitbucketweb
129. fixed logging in scripts — dabi / bitbucketweb
130. fixed full rbf in defaults — dabi / bitbucketweb
131. fixed script sequential — dabi / bitbucketweb
132. fixed print in sequential script and fixed parallel implementation... — dabi / bitbucketweb
133. additional fix in sequential script — dabi / bitbucketweb
134. additional fix in sequential script — dabi / bitbucketweb
135. working on the components iterator — dabi / bitbucketweb
136. most of the pieces are in place. to be tested — dabi / bitbucketweb
137. debugging — dabi / bitbucketweb
138. actual implementation pass unit test_kl_minimization — dabi / bitbucketweb
139. it works on the tutorial examples — dabi / bitbucketweb
140. adding data for tutorial inv-stocvol — dabi / bitbucketweb
141. fixed bug in linear span kl minimization — dabi / bitbucketweb
142. fixed bug in parallel inverse map from samples — dabi / bitbucketweb
143. working on a fix for linear span solver by component — dabi / bitbucketweb
144. fixed all (?) bugs on the linear span from samples/ — dabi / bitbucketweb
145. fixed bug on linear span solve due to I19 merge — dabi / bitbucketweb
146. porting plots from DEPREC branch to this up-to-date branch — dabi / bitbucketweb
147. added btc/usd data — dabi / bitbucketweb
148. working on stoc vol with 10^4 data. working on tmap-max-likelihood — dabi / bitbucketweb
149. working on stoc vol with 10^4 data. working on tmap-max-likelihood — dabi / bitbucketweb
150. going on with scripts for plots — dabi / bitbucketweb
151. going on with scripts for plots — dabi / bitbucketweb
152. done with plotting routines — dabi / bitbucketweb
153. working on plotts — dabi / bitbucketweb
154. working on basic adaptivity in order to get it into the low-dim paper — dabi / bitbucketweb
155. working on basic adaptivity in order to get it into the low-dim paper — dabi / bitbucketweb
156. testing new builders — dabi / bitbucketweb
157. sequential inference tested with standard builder — dabi / bitbucketweb
158. running sequential algorithm with sequential adaptivity — dabi / bitbucketweb
159. improved scripts for running sequential inference — dabi / bitbucketweb
160. updated runner — dabi / bitbucketweb
161. added plot exchanges — dabi / bitbucketweb
162. added functionalities to tmap-sequential-tm script — dabi / bitbucketweb
163. started with regression adaptivityu — dabi / bitbucketweb
164. .... — dabi / bitbucketweb
165. calibrating parameters in stoc vol — dabi / bitbucketweb
166. finding correct configuration — dabi / bitbucketweb
167. working on 945 test case. Added tolerance driven adaptivity — dabi / bitbucketweb
168. working on script for 945 observations — dabi / bitbucketweb
169. working on 945 configuration and figures — dabi / bitbucketweb
170. ready to plot? — dabi / bitbucketweb
171. restructured CLI — dabi / bitbucketweb
172. restructuring scripts — dabi / bitbucketweb
173. working on trimmed postprocess — dabi / bitbucketweb
174. restructured CLI commands and added trimming functionalities for — dabi / bitbucketweb
175. updated exchange plotting — dabi / bitbucketweb
176. added dates in plots — dabi / bitbucketweb
177. added metropolis hastings and MH within Gibbs — dabi / bitbucketweb
178. working for figures 500 observations — dabi / bitbucketweb
179. fixed the default constructor, using Hermite poly for non integrated — dabi / bitbucketweb
180. fixed External.py import — dabi / bitbucketweb
181. preparing runner for slurm — dabi / bitbucketweb
182. setting up slurm — dabi / bitbucketweb
183. modified defaults integrated squared. Now using — dabi / bitbucketweb
184. fixing typos — dabi / bitbucketweb

#2 (Apr 30, 2017, 7:24:03 PM)

1. New stoc vol file — spantini / bitbucketweb
2. Done with implementation stochastic volatility with no hyper-parameters — spantini / bitbucketweb
3. Stochastic volatility — spantini / bitbucketweb
4. answers to Alessio comments — dabi / bitbucketweb
5. started with solver — spantini / bitbucketweb
6. stoc vol works. TODO: implement diagnostics — dabi / bitbucketweb
7. started with total order implementation — dabi / bitbucketweb
8. working on MixedOrder class. — dabi / bitbucketweb
9. working on mixed order — dabi / bitbucketweb
10. working on MixedOrder — dabi / bitbucketweb
11. Added diagnostic routines — spantini / bitbucketweb
12. merged into toolbox — dabi / bitbucketweb
13. working on stocVol example — dabi / bitbucketweb
14. stocVol — dabi / bitbucketweb
15. stocVol — dabi / bitbucketweb
16. added matplotlib dependency — dabi / bitbucketweb
17. working on banana example — dabi / bitbucketweb
18. documenting banana — dabi / bitbucketweb
19. working on banana — dabi / bitbucketweb
20. working on banana example — dabi / bitbucketweb
21. banana example needs documentation regarding diagnostics — dabi / bitbucketweb
22. added some diagnostics — dabi / bitbucketweb
23. working on laplace_approximation function — dabi / bitbucketweb
24. laplace — dabi / bitbucketweb
25. working on optimizer — dabi / bitbucketweb
26. Laplace approx done. To be tested. — dabi / bitbucketweb
27. working on FrozenGaussian with precision input — dabi / bitbucketweb
28. tests passed for new version of GaussianDensity. TODO: add unittests — dabi / bitbucketweb
29. done precision tests — dabi / bitbucketweb
30. laplace works. to finish tests — dabi / bitbucketweb
31. laplace works. to finish tests — dabi / bitbucketweb
32. laplace works. to finish tests — dabi / bitbucketweb
33. Laplace ready — dabi / bitbucketweb
34. test optimizer — spantini / bitbucketweb
35. working on optimizer — spantini / bitbucketweb
36. fixed optimizer — dabi / bitbucketweb
37. optimizer works! — dabi / bitbucketweb
38. added some docs on banana — dabi / bitbucketweb
39. added some logging in the Diagnostic module. To be added all over. — dabi / bitbucketweb
40. newton_cglu_optimizer — spantini / bitbucketweb
41. added function niceplot — spantini / bitbucketweb
42. Added class TransportMap — spantini / bitbucketweb
43. class TransportMap integrated — dabi / bitbucketweb
44. Init maps — spantini / bitbucketweb
45. working on the CommonBase LinearSpan TM — dabi / bitbucketweb
46. Removed duplicate pullback functions — spantini / bitbucketweb
47. working on CommonBase LinearSpan Map — dabi / bitbucketweb
48. linear transport map — spantini / bitbucketweb
49. fixed naming of TransportMaps — spantini / bitbucketweb
50. working on CommonBase LinearSpan Map — dabi / bitbucketweb
51. working on CommonBase LinearSpan Map — dabi / bitbucketweb
52. Done CommonBasis LinearSpan Map. Moving to — dabi / bitbucketweb
53. working on CommonBasisLinearSpanApproximation — dabi / bitbucketweb
54. working on CommonBasisLinearSpanApproximation — dabi / bitbucketweb
55. working on CommBase Map — dabi / bitbucketweb
56. moving function evaluation and gradients into LineaSpanAppoximation — dabi / bitbucketweb
57. Done with linear map class. Now moving to unit test — spantini / bitbucketweb
58. in process of migrating functions from FullLinearSpan to LinearSpan with — dabi / bitbucketweb
59. moved most of the stuff to LinearSpan — dabi / bitbucketweb
60. moved most of the stuff to LinearSpan — dabi / bitbucketweb
61. LinearSpanApproximations ready. Move to TriangularTransportMap — dabi / bitbucketweb
62. Minor changes — spantini / bitbucketweb
63. changed uml — dabi / bitbucketweb
64. Added plotAlignedSliceMap — spantini / bitbucketweb
65. Added niceContour, plot2density and testBananaPullback — spantini / bitbucketweb
66. added testBananaPullback — spantini / bitbucketweb
67. fixed l2 regularization — dabi / bitbucketweb
68. rotated banana improved — dabi / bitbucketweb
69. working on #36. Done with Transport maps? — dabi / bitbucketweb
70. Banana example linear span — spantini / bitbucketweb
71. some mods on the examples — dabi / bitbucketweb
72. #26 working on TM densities test cases — dabi / bitbucketweb
73. working on test cases — dabi / bitbucketweb
74. working on test cases — dabi / bitbucketweb
75. working on density test cases — dabi / bitbucketweb
76. working on test cases for densities — dabi / bitbucketweb
77. working on dens test cases — dabi / bitbucketweb
78. working on tests densities — dabi / bitbucketweb
79. transport map densities tests added. Still some problems on the linear — dabi / bitbucketweb
80. added tests for kl_divergence — dabi / bitbucketweb
81. removed old tests structure — dabi / bitbucketweb
82. #26 fixed all unittests. TODO add test for LinearTransportMap (Alessio) — dabi / bitbucketweb
83. updating UML graph and TransportMap classes — dabi / bitbucketweb
84. Fixes #27: UML graph updated — dabi / bitbucketweb
85. fixed import name for CommonBasisLinearSpanTriangularTransportMap — dabi / bitbucketweb
86. relaxed target eps in MC tests for density unittests — dabi / bitbucketweb
87. Jenkins test develop script added — dabi / bitbucketweb
88. fixed test_develop chmod — dabi / bitbucketweb
89. #25 restructuring precomp strategy in order to enrich the precomp — dabi / bitbucketweb
90. #25 restructuring precomp strategy in order to enrich the precomp — dabi / bitbucketweb
91. #25 restructuring precomp strategy in order to enrich the precomp — dabi / bitbucketweb
92. uni-variate preallocation works for linear system — dabi / bitbucketweb
93. working on TransportMapBase to allow both uni-variate and multi-variate — dabi / bitbucketweb
94. working on TransportMapBase to allow both uni-variate and multi-variate — dabi / bitbucketweb
95. #25 linear span transport maps with precomputation of uni-variate and — dabi / bitbucketweb
96. working on IntegratedExp approximation — dabi / bitbucketweb
97. working on IntegratedExp approximation — dabi / bitbucketweb
98. working on IntegratedExp approximation — dabi / bitbucketweb
99. working on precomputation in integrated exponential. Some tests fail... — dabi / bitbucketweb
100. #25 preomputation on integrated exponential works! Make comprehensive — dabi / bitbucketweb
101. fixed FrozenFunction precomp functions — dabi / bitbucketweb
102. KLdivergence example with options — dabi / bitbucketweb
103. working on common basis — dabi / bitbucketweb
104. working on common basis — dabi / bitbucketweb
105. fixing common basis — dabi / bitbucketweb
106. CommonBasisLinearSpan ready. TODO: unittests — dabi / bitbucketweb
107. making unittests for CommonBasisLinearSpan — dabi / bitbucketweb
108. fixed stoc Vol with constant term — dabi / bitbucketweb
109. CommonBasis LinearSpan works. Moving to IntegratedExponential — dabi / bitbucketweb
110. CommonBasisIntExp started. precomp_evaluate done — dabi / bitbucketweb
111. IntExpFunctionApproximation precomputation structure refactorization — dabi / bitbucketweb
112. refactored IntExpFuncApproximation — dabi / bitbucketweb
113. working on CommonBasis IntegExp — dabi / bitbucketweb
114. CommonBasis IntegratedExponential works — dabi / bitbucketweb
115. KLdivergence example now uses CommonBasis implementation — dabi / bitbucketweb
116. Fixes #25. — dabi / bitbucketweb
117. updated banana example with common basis — dabi / bitbucketweb
118. TotalOrder approximation added. Fix the integration into IntExp — dabi / bitbucketweb
119. Total order working on test_transportmaps. TODO: Add — dabi / bitbucketweb
120. Total Order unittests done — dabi / bitbucketweb
121. fixed CommonBasis precomputation, adding to_compute_flag — dabi / bitbucketweb
122. Fixes #1. Total order truncation implemented. Updated KLdivergence — dabi / bitbucketweb
123. Added BOD model and ConditionedDiffusion folders — spantini / bitbucketweb
124. fixed conflict on testBananaPullback — dabi / bitbucketweb
125. started with new branch — rebeccae.morrison / bitbucketweb
126. fixed bug on GaussianDensity rvs — rebeccae.morrison / bitbucketweb
127. fixed bug on GaussianDensity rvs — dabi / bitbucketweb
128. working on stochastic volatility example — dabi / bitbucketweb
129. Added joint BOD model — spantini / bitbucketweb
130. reshaping StochasticVolatility example — dabi / bitbucketweb
131. BOD model works. — dabi / bitbucketweb
132. Stochastic volatility issuing command changed — dabi / bitbucketweb
133. #31 started optional vectorization of expectations in — dabi / bitbucketweb
134. Notes composition map Stoc Vol — spantini / bitbucketweb
135. Added banana folder — spantini / bitbucketweb
136. starting with stoc vol composition — dabi / bitbucketweb
137. split map generation from StochasticVolatility files — dabi / bitbucketweb
138. Added gradients composition — spantini / bitbucketweb
139. Added gradients composition — spantini / bitbucketweb
140. Added Markov Component Stoc Vol — spantini / bitbucketweb
141. stoc vol composition almost there.... — dabi / bitbucketweb
142. stoc vol composition runs. TODO: compose all the maps — dabi / bitbucketweb
143. working on lifting and overall pullback — dabi / bitbucketweb
144. stochastic volatility composition works!!! — dabi / bitbucketweb
145. refactoring the vectorization in several routines... to be finished. — dabi / bitbucketweb
146. #31 refactoring to allow computations in batches — dabi / bitbucketweb
147. refactored everything to execute in batches defined by a list (iterable) — dabi / bitbucketweb
148. new implementation works on old unit tests — dabi / bitbucketweb
149. current implementation works on unittests and KLdivergence example test — dabi / bitbucketweb
150. setting up BOD model for higher dimension... — dabi / bitbucketweb
151. Opens #20. Added logging capabilities in the minimize_kl_divergence — dabi / bitbucketweb
152. working on BOD higher order — dabi / bitbucketweb
153. working on bod — dabi / bitbucketweb
154. working on KL divergence arctan function — dabi / bitbucketweb
155. cleaned KL divergence file — dabi / bitbucketweb
156. re-organized predefined densities — dabi / bitbucketweb
157. added corresponding changes also in the LinearTransportMap class — dabi / bitbucketweb
158. working on the tilted banana — dabi / bitbucketweb
159. updating LinearTransportMap — dabi / bitbucketweb
160. updating LinearTransportMap — dabi / bitbucketweb
161. working on banana — dabi / bitbucketweb
162. added default classes for Isotropic transport maps — dabi / bitbucketweb
163. added default classes for Isotropic transport maps — dabi / bitbucketweb
164. using default functions all over — dabi / bitbucketweb
165. working on rotated banana — dabi / bitbucketweb
166. #35 working on cached evaluations low-level — dabi / bitbucketweb
167. #35 low-level caching for function evaluation implemented. TODO: check — dabi / bitbucketweb
168. removed some all-equal statements — dabi / bitbucketweb
169. changed handling of indices — dabi / bitbucketweb
170. caching low level partial_xd done — dabi / bitbucketweb
171. changed array_equal withing function evaluation with a same_coeffs_flag — dabi / bitbucketweb
172. fixed FrozenTriangularTransportMaps — dabi / bitbucketweb
173. Gradients conditional diffusion — spantini / bitbucketweb
174. working on conditioned diffusion script. fixed inputs to StocVol — dabi / bitbucketweb
175. conditioned diffusion running script ready — dabi / bitbucketweb
176. using default TransportMap generation all over the place — dabi / bitbucketweb
177. Implemented gradients Markov Component Cond Diff — spantini / bitbucketweb
178. working on fixing stochastic volatility components. TODO: Fix the — dabi / bitbucketweb
179. fixed full transport map with extra same_coeffs_flag — dabi / bitbucketweb
180. Debugging Hessian CondDiff — spantini / bitbucketweb
181. Fixed gradient Markov Component Conditioned Diffusion — spantini / bitbucketweb
182. Added composition maps for conditione diffusion — spantini / bitbucketweb
183. working on conditioned diffusion — dabi / bitbucketweb
184. FullTransportMap does not need to redefine pullback and pushforward — dabi / bitbucketweb
185. cond diffusion works. better parametrization is needed (RBF?) — dabi / bitbucketweb
186. can recover precision matrix in 3d — rebeccae.morrison / bitbucketweb
187. updating UML diagram — dabi / bitbucketweb
188. map from samples now has a couple more distributions to sample from — rebeccae.morrison / bitbucketweb
189. mapFromSamples also plots histograms of pullback against original — rebeccae.morrison / bitbucketweb
190. removed "TranportMaps." tag from index — dabi / bitbucketweb
191. compare map to analytical — rebeccae.morrison / bitbucketweb
192. histogram plots a bit nicer — rebeccae.morrison / bitbucketweb
193. working on using RBF in banana example — dabi / bitbucketweb
194. preparing for high-level caching. Restructured precomp structure — dabi / bitbucketweb
195. high-level caching is done. TODO: check it is doing what is required to — dabi / bitbucketweb
196. the high-level caching and the computation in batches/parallel need to — dabi / bitbucketweb
197. mfs looking good, need support map still — rebeccae.morrison / bitbucketweb
198. updated interface min_kl_div in TransportMapBase — dabi / bitbucketweb
199. removed low-level caching. added high-level caching. TODO: check that — dabi / bitbucketweb
200. added test case for high-level caching. change idxs_list to idxs_slice — dabi / bitbucketweb
201. test cases work. try it out on examples and then test performaces on BOD — dabi / bitbucketweb
202. works on examples kldivergence. Check that caching is actually used — dabi / bitbucketweb
203. #35 high-level caching successful. TODO: profile on the BOD example. — dabi / bitbucketweb
204. turned pushforward to exp(log_pushforward) — dabi / bitbucketweb
205. experimenting on the banana example — dabi / bitbucketweb
206. fixed bug in TransportMapBase — dabi / bitbucketweb
207. removed flag vectorize. batch_size determines whether vectorize or not — dabi / bitbucketweb
208. updated examples without vectorize flags — dabi / bitbucketweb
209. fixed kl_divergence routines with batches. list -> slice — dabi / bitbucketweb
210. working on low-level caching — dabi / bitbucketweb
211. working on low-level caching — dabi / bitbucketweb
212. low-level caching works on test cases — dabi / bitbucketweb
213. trying to improve the hess computation — dabi / bitbucketweb
214. alternative solution — dabi / bitbucketweb
215. added grad_a_squared with precomputed VVT — dabi / bitbucketweb
216. removed same_coeffs_flag and added caching for partial_xd — dabi / bitbucketweb
217. working on the banana — dabi / bitbucketweb
218. reverted to grad_a instead of grad_a_squared — dabi / bitbucketweb
219. polishing hess_a in IntegExp — dabi / bitbucketweb
220. polishing hess_a — dabi / bitbucketweb
221. polishing hessian little by little — dabi / bitbucketweb
222. mfsSandia includes transform — rebeccae.morrison / bitbucketweb
223. some improvements in hess_a_log_pullback — dabi / bitbucketweb
224. working on banana — dabi / bitbucketweb
225. fixed import to numpy.linalg — dabi / bitbucketweb
226. fixed hessian with regularization — dabi / bitbucketweb
227. adding missing files to conditioned diffusion — dabi / bitbucketweb
228. working on stoch diff — dabi / bitbucketweb
229. working on conditioned diffusion — dabi / bitbucketweb
230. improving visualization in conditioned diffusion — dabi / bitbucketweb
231. plot in place conditioned diffusion — dabi / bitbucketweb
232. working on value at risk problem — dabi / bitbucketweb
233. working on the banana — dabi / bitbucketweb
234. working on banana — dabi / bitbucketweb
235. adding missing files to conditioned diffusion — dabi / bitbucketweb
236. working on stoch diff — dabi / bitbucketweb
237. working on conditioned diffusion — dabi / bitbucketweb
238. improving visualization in conditioned diffusion — dabi / bitbucketweb
239. plot in place conditioned diffusion — dabi / bitbucketweb
240. working on value at risk problem — dabi / bitbucketweb
241. remove rare events — dabi / bitbucketweb
242. starting the sparsity algorithm — rebeccae.morrison / bitbucketweb
243. sandia samples: now asks whether right or left-tailed — rebeccae.morrison / bitbucketweb
244. plot samples includes 1d analytic form — rebeccae.morrison / bitbucketweb
245. sandia1d computes analytical pdf and kl between that and computed — rebeccae.morrison / bitbucketweb
246. kl div in 1d needs approximation help — rebeccae.morrison / bitbucketweb
247. pullback density in progress — rebeccae.morrison / bitbucketweb
248. fixed pullback — rebeccae.morrison / bitbucketweb
249. trying MSE ? instead of KL — rebeccae.morrison / bitbucketweb
250. mse computation in development — rebeccae.morrison / bitbucketweb
251. Open #8 — dabi / bitbucketweb
252. added derivative checks tests for pushforward transport map densities. — dabi / bitbucketweb
253. building up example for inverse construction — dabi / bitbucketweb
254. set up kl using TM density — rebeccae.morrison / bitbucketweb
255. examples work derivative free — dabi / bitbucketweb
256. creating inverse gradients — dabi / bitbucketweb
257. working on gradient — dabi / bitbucketweb
258. checking gradient — dabi / bitbucketweb
259. back to kl — rebeccae.morrison / bitbucketweb
260. gradient inverse map works — dabi / bitbucketweb
261. implemented gradient. to be checked with tests and stochastic volatility — dabi / bitbucketweb
262. grad_a_log_pushforward passes the unit test. Check signs and fix — dabi / bitbucketweb
263. grad_a_log_pushforward passes the unit test. Check signs and fix — dabi / bitbucketweb
264. unit tests passed. Remove precomputation in minimization in order to — dabi / bitbucketweb
265. inverse solution works. todo: profile to see whether some computations — dabi / bitbucketweb
266. partition densities off — rebeccae.morrison / bitbucketweb
267. working on banana example — dabi / bitbucketweb
268. added no-plot option — dabi / bitbucketweb
269. Open #19: written test functions for map from samples. The problem has — dabi / bitbucketweb
270. maps from samples tests work fine — dabi / bitbucketweb
271. working on composite and inverse transport maps, in order to do — dabi / bitbucketweb
272. working on the missing composition functions — dabi / bitbucketweb
273. adding missing functions — dabi / bitbucketweb
274. added grad_x and hess_x functions to Composite maps. — dabi / bitbucketweb
275. working on the banana example. transform the target to the pushforward — dabi / bitbucketweb
276. adding necessary inverse functions for pushforward — dabi / bitbucketweb
277. fixing banana with composition of maps — dabi / bitbucketweb
278. updated UML diagram — dabi / bitbucketweb
279. banana example works with composite densities — dabi / bitbucketweb
280. mfs tests has laplace, needs reorg — rebeccae.morrison / bitbucketweb
281. test cases using randomly generated coefficients work — dabi / bitbucketweb
282. started with direct construction of the inverse sv transport. Added — dabi / bitbucketweb
283. added default also for linear span approximations — dabi / bitbucketweb
284. working on sv inverse transport — dabi / bitbucketweb
285. woring on stoc vol — dabi / bitbucketweb
286. working on cond diffustion — dabi / bitbucketweb
287. small changes in defaluts — dabi / bitbucketweb
288. Default option poly and rbf — dabi / bitbucketweb
289. added rbf/poly option to cond diffusion — dabi / bitbucketweb
290. working on storage and reload of computed maps — dabi / bitbucketweb
291. construction and postprocessing scripts for conditioned diffusion are — dabi / bitbucketweb
292. fixed random conditionals plotting problem — dabi / bitbucketweb
293. storage (using dill) and post processing of conditioned diffusion — dabi / bitbucketweb
294. test numbers 1-4 in extra densities — rebeccae.morrison / bitbucketweb
295. working on plotting of conditioned diffusion — dabi / bitbucketweb
296. fixed bug in plotAlignedConditionals — dabi / bitbucketweb
297. plotting — dabi / bitbucketweb
298. forcing full span when rbf is chosen in default constructors — dabi / bitbucketweb
299. condiff: fixed input span to — dabi / bitbucketweb
300. testing higher order for cond diff — dabi / bitbucketweb
301. fixed problem in aligned map plotting — dabi / bitbucketweb
302. started with parallelization of diagnostics — dabi / bitbucketweb
303. parallelization of the diagnostics — dabi / bitbucketweb
304. cond diff: adaptation — dabi / bitbucketweb
305. cond diff: adaptation works — dabi / bitbucketweb
306. parallelization works for aligned conditionals — dabi / bitbucketweb
307. working on cond diff example and figures — dabi / bitbucketweb
308. plot with log log — rebeccae.morrison / bitbucketweb
309. plotting diagnostic parallelized with mpi_map v1.0.3 — dabi / bitbucketweb
310. updated conditioned diffusion postprocessing files — dabi / bitbucketweb
311. added variance based diagnostic — dabi / bitbucketweb
312. allow for restart in cond diff example — dabi / bitbucketweb
313. working on restarting of cond diff — dabi / bitbucketweb
314. plotting diagnostic now stack all the evaluation points together in — dabi / bitbucketweb
315. added nprocs in adapted composition cond diff — dabi / bitbucketweb
316. fixed bug in slice map plotting — dabi / bitbucketweb
317. cond diff with restart works — dabi / bitbucketweb
318. fixed problem in inverse which would cause loss of precision. cond diff — dabi / bitbucketweb
319. started with the parallelization of variance_approx_kl. Changes are — dabi / bitbucketweb
320. added Weibull density to the available test distributions — dabi / bitbucketweb
321. moved all pc_density analytical stuff to ExtraDensities — rebeccae.morrison / bitbucketweb
322. started with issue #41. made a sketch c++ module — dabi / bitbucketweb
323. handling arrays Numpy/C done — dabi / bitbucketweb
324. started with weird sampler — dabi / bitbucketweb
325. sampler done — dabi / bitbucketweb
326. working on construction from samples — dabi / bitbucketweb
327. working on Laplace for cond diff — dabi / bitbucketweb
328. working on plots cond diff — dabi / bitbucketweb
329. some plotting progresses — dabi / bitbucketweb
330. example for xun ready. Todo: document it.. — dabi / bitbucketweb
331. added readme to the CPP-module example — dabi / bitbucketweb
332. removed unnecessary files — dabi / bitbucketweb
333. prepared figures for YMM presentation — dabi / bitbucketweb
334. working on the direct approximation of the Weibull distribution — dabi / bitbucketweb
335. log_pdf in extra doesn't work with algorithm, but algorithm is running — rebeccae.morrison / bitbucketweb
336. working on map composition direct transport — dabi / bitbucketweb
337. Weibull works. Added asymptotic behavior on the Logistic. — dabi / bitbucketweb
338. starting with stochastic volatility — dabi / bitbucketweb
339. working on step by step construction — dabi / bitbucketweb
340. reordering in progress — rebeccae.morrison / bitbucketweb
341. renamed files — dabi / bitbucketweb
342. moving in the dark for Logistic and Banana examples... — dabi / bitbucketweb
343. added installation tips in the documentation — dabi / bitbucketweb
344. reorganizing example file organization — dabi / bitbucketweb
345. fixed bug due to new version of SciPy rootfinding routine. tolerances — dabi / bitbucketweb
346. rewriting the density — dabi / bitbucketweb
347. sv density and data generation ready — dabi / bitbucketweb
348. sv: Laplace done — dabi / bitbucketweb
349. sv: composition of maps done, with postprocess — dabi / bitbucketweb
350. sv: direct map done — dabi / bitbucketweb
351. direct map in low dimension — dabi / bitbucketweb
352. sv: inverse map construction — dabi / bitbucketweb
353. algorithm working, with unnormalized data — rebeccae.morrison / bitbucketweb
354. normalizing data, in progress — rebeccae.morrison / bitbucketweb
355. sv working on the inverse map — dabi / bitbucketweb
356. algorithm with renormalized data — rebeccae.morrison / bitbucketweb
357. working on sv inverse — dabi / bitbucketweb
358. added grad check on minimiziation. working on sv inverse... — dabi / bitbucketweb
359. fixed bug on grad_a_inverse pushforward... — dabi / bitbucketweb
360. sv inverse map preconditioned throught laplace pullback — dabi / bitbucketweb
361. preparing dataset for Shwab — dabi / bitbucketweb
362. algorithm tau change — rebeccae.morrison / bitbucketweb
363. updated jenkins links — dabi / bitbucketweb
364. reversed to v1.0.0 for initial releases — dabi / bitbucketweb
365. data loading script for Robert done — dabi / bitbucketweb
366. data loading for Robert works — dabi / bitbucketweb
367. Added example with only the material for Shwab — dabi / bitbucketweb
368. added test pullback for shwab material — dabi / bitbucketweb
369. mc study of map parameters — rebeccae.morrison / bitbucketweb
370. memory leak issue — rebeccae.morrison / bitbucketweb
371. renamed variables — dabi / bitbucketweb
372. sv: inverse map preconditioned with diagonal Laplace — dabi / bitbucketweb
373. debugging memory leak — dabi / bitbucketweb
374. added if conditions around logging outputs — dabi / bitbucketweb
375. partially solved memory leak. There is still an issue with precomputed — dabi / bitbucketweb
376. improved logging — dabi / bitbucketweb
377. New stoc vol with hyperparameters doc — spantini / bitbucketweb
378. fixing memory leak — dabi / bitbucketweb
379. Done with the derivation of the  Stoc Vol model  with Hyper-params — spantini / bitbucketweb
380. cleaned msf_kl_test file — dabi / bitbucketweb
381. mc_sparsity.py — rebeccae.morrison / bitbucketweb
382. post processing mc study — rebeccae.morrison / bitbucketweb
383. diagnostics are now parallelized — dabi / bitbucketweb
384. #45 added default constructors to examples. TODO: fix Gumbel — dabi / bitbucketweb
385. Fixes #45 — dabi / bitbucketweb
386. finished with default constructors examples — dabi / bitbucketweb
387. post proc for mc study has S and Omega matrix and element-wise norms — rebeccae.morrison / bitbucketweb
388. Implementing gradients Stoc Vol with Hyper-parameters — spantini / bitbucketweb
389. caching passes unit tests. TODO: test on example and check speedup — dabi / bitbucketweb
390. added time tracking for examples — dabi / bitbucketweb
391. working on examples — dabi / bitbucketweb
392. added timing in all the examples — dabi / bitbucketweb
393. taking top-down approach. started with kl_divergence functions in — dabi / bitbucketweb
394. variable elimination added but has bug, need to find cliques in matrix — rebeccae.morrison / bitbucketweb
395. applied changes to all functions in Routines.py. TODO: think about the — dabi / bitbucketweb
396. grid graph implemented — rebeccae.morrison / bitbucketweb
397. designed a way to make chacing and batching work while parallelizing the — dabi / bitbucketweb
398. working on parallel structures — dabi / bitbucketweb
399. parallelization of kl_divergence done... maybe. — dabi / bitbucketweb
400. working on parallel batching... — dabi / bitbucketweb
401. working on parallel-batching... — dabi / bitbucketweb
402. MPI implementation to be debugged (old and new unit tests) — dabi / bitbucketweb
403. old unit tests work!! — dabi / bitbucketweb
404. parallel evaluation of kl divergence work almost on all test cases.. — dabi / bitbucketweb
405. parallelization now allows for the use of a pool of processors which are — dabi / bitbucketweb
406. added unit tests for minimization. to be tested — dabi / bitbucketweb
407. kl tests — dabi / bitbucketweb
408. working on unit tests — dabi / bitbucketweb
409. fixed test case for arctan parallel — dabi / bitbucketweb
410. minimization tests passed — dabi / bitbucketweb
411. Done with full joint  Stoc Vol with Hypers — spantini / bitbucketweb
412. bug fixed. running all tests! — dabi / bitbucketweb
413. fixed bugs! MPI works! TODO: update the examples — dabi / bitbucketweb
414. Done with Markov Component of Stoc Vol with Hypers — spantini / bitbucketweb
415. parallelization works on the examples. TODO: profiling — dabi / bitbucketweb
416. fixed bug on unit tests — dabi / bitbucketweb
417. speed up unit tests kl divergence — dabi / bitbucketweb
418. parallelized precomputation and fixed bug in test_kl_divergence — dabi / bitbucketweb
419. another bug in test_kl — dabi / bitbucketweb
420. another bug in test_kl — dabi / bitbucketweb
421. running tests on stochastic volatility with hyperparameters — dabi / bitbucketweb
422. working on parallelization of generation of new samples — dabi / bitbucketweb
423. parallelized generation of samples — dabi / bitbucketweb
424. post-proc finds error, variance and bias — rebeccae.morrison / bitbucketweb
425. fixed mpi_eval call in regression — dabi / bitbucketweb
426. fixed bug regression — dabi / bitbucketweb
427. removed parallelization in regression for now... opening #52 — dabi / bitbucketweb
428. working on composition of maps — dabi / bitbucketweb
429. working on stoch vol — dabi / bitbucketweb
430. examples work without mpirun — dabi / bitbucketweb
431. Fixes #53. — dabi / bitbucketweb
432. optional matplotlib in examples — dabi / bitbucketweb
433. updated testing script — dabi / bitbucketweb
434. made matplotlib optional throughout the module — dabi / bitbucketweb
435. added script for running on voyager.mit.edu — dabi / bitbucketweb
436. working on stochvol — dabi / bitbucketweb
437. working on cluster — dabi / bitbucketweb
438. fixed bug in kl divergence unit tests — dabi / bitbucketweb
439. working on cluster — dabi / bitbucketweb
440. Added trim density on Stoc Vol Hyper — spantini / bitbucketweb
441. map generation for density with hyper parameters — dabi / bitbucketweb
442. working on postprocessing — dabi / bitbucketweb
443. Fixed deepcopy issues with Stoc Vol — spantini / bitbucketweb
444. working on cluster — dabi / bitbucketweb
445. postprocessing step — dabi / bitbucketweb
446. fix typo in Routines.py — rebeccae.morrison / bitbucketweb
447. fixed map generation with hyper — dabi / bitbucketweb
448. all tests pass — dabi / bitbucketweb
449. changes made on hess_x_log_pullback. TODO: replicate on other hess_x — dabi / bitbucketweb
450. Issue #31: removed construction of m x d x d x d x d tensor from — dabi / bitbucketweb
451. working on #40: implementing the map-reduce scheme — dabi / bitbucketweb
452. the map-reduce scheme works. Figure out why the number of processes — dabi / bitbucketweb
453. Fixes #53: implements map-reduce scheme — dabi / bitbucketweb
454. histograms of map and omega entries — rebeccae.morrison / bitbucketweb
455. added the stochastic Laplace postprocessing for the hyperparamters case — dabi / bitbucketweb
456. laplace approximation posprocess for hyper parameters — dabi / bitbucketweb
457. Implemented Markov component stoc vol hyper — spantini / bitbucketweb
458. added defaults for components with different basis and span — dabi / bitbucketweb
459. ready to test — spantini / bitbucketweb
460. fix bug on defaults — dabi / bitbucketweb
461. almost testing — spantini / bitbucketweb
462. fixes.. — dabi / bitbucketweb
463. something is running — spantini / bitbucketweb
464. Scripts composition stoc vol with hyper working — spantini / bitbucketweb
465. fixed defaults — dabi / bitbucketweb
466. working on unit tests for clusters — dabi / bitbucketweb
467. Ready for full problem with 1hyper — spantini / bitbucketweb
468. Ready for full problem with 1hyper — spantini / bitbucketweb
469. unit tests on cluster work — dabi / bitbucketweb
470. Fixes for full problem with 1hyper — spantini / bitbucketweb
471. Stoc Vol Hyper--configuration for 2 hyper — spantini / bitbucketweb
472. Stoc Vol Hyper--configuration for 2 hyper — spantini / bitbucketweb
473. working on first variation examples — dabi / bitbucketweb
474. working on example — dabi / bitbucketweb
475. working on first variation — dabi / bitbucketweb
476. fixed bug on defaults — dabi / bitbucketweb
477. other bug.. — dabi / bitbucketweb
478. added job number in submission script for clusters — dabi / bitbucketweb
479. added voyager submission script — dabi / bitbucketweb
480. Setup for 3hypers Stoc Vol — spantini / bitbucketweb
481. Setup for 3hypers Stoc Vol — spantini / bitbucketweb
482. very unsure on where to put the first variation implementation — dabi / bitbucketweb
483. regression example works on python3 — dabi / bitbucketweb
484. working on parallelization of regression — dabi / bitbucketweb
485. regression is now parallel. TODO: implement map-reduce for regression — dabi / bitbucketweb
486. warm start with skipping steps done. It should be tested first! — dabi / bitbucketweb
487. Changes to plot and postprocessing — spantini / bitbucketweb
488. histograms have no ticks or labels — rebeccae.morrison / bitbucketweb
489. added data for 2hyper — dabi / bitbucketweb
490. added results for 1hyper — dabi / bitbucketweb
491. working on hypersonic. added lag on composition construction. — dabi / bitbucketweb
492. Getting rid of the recursion for composition of maps — spantini / bitbucketweb
493. Input NMC to post processing script — spantini / bitbucketweb
494. first variation implemented. TODO: test it — dabi / bitbucketweb
495. added mpi_pool argument to diagnostic functions. Changed design of — dabi / bitbucketweb
496. fixed variance diagnostic routine — dabi / bitbucketweb
497. fixed routine variance diagnostic — dabi / bitbucketweb
498. data 3hyper — dabi / bitbucketweb
499. working on refinement — dabi / bitbucketweb
500. working on test case 2d — dabi / bitbucketweb
501. fixed file TransportMapDensities. The PullBackDensity was defined — dabi / bitbucketweb
502. pdf as exp(log_pdf) — dabi / bitbucketweb
503. Fixes to post-processing trim script — spantini / bitbucketweb
504. working on plots — dabi / bitbucketweb
505. working on plots of the first variation — dabi / bitbucketweb
506. Decoupled data analysis from plots — spantini / bitbucketweb
507. working on plots of first variation 2d — dabi / bitbucketweb
508. added diagonal transport map — dabi / bitbucketweb
509. adaptivity works on banana — dabi / bitbucketweb
510. adaptive refinement works on banana with hyper-cross enrichment — dabi / bitbucketweb
511. working on the banana — dabi / bitbucketweb
512. done with the banana example — dabi / bitbucketweb
513. started with stochastic volatility — dabi / bitbucketweb
514. added results 2 hyper — dabi / bitbucketweb
515. working on adaptivity for stochastic volatility — dabi / bitbucketweb
516. it somehow works on stoc vol 5 steps — dabi / bitbucketweb
517. removed data from branch — dabi / bitbucketweb
518. new enrichment and stopping strategy in first variation adaptivity. — dabi / bitbucketweb
519. preparing sensitivity tests — dabi / bitbucketweb
520. refinement routine done. to be tested — dabi / bitbucketweb
521. working on full algorithm for adaptivity — dabi / bitbucketweb
522. working on remove coefficients — dabi / bitbucketweb
523. first variation approach designed — dabi / bitbucketweb
524. added input arguments to scripts — dabi / bitbucketweb
525. 2hyper map 100 — dabi / bitbucketweb
526. refinement strategy includes check on sensitivity of variance diagnostic — dabi / bitbucketweb
527. data for stoc vol 2 hypers n100 — spantini / bitbucketweb
528. added analysis 2hyper 100steps — dabi / bitbucketweb
529. working on figures — dabi / bitbucketweb
530. working on plots — dabi / bitbucketweb
531. map from samples notebook started — rebeccae.morrison / bitbucketweb
532. post processing — rebeccae.morrison / bitbucketweb
533. map from samples notebook, code fine but maybe should have more text — rebeccae.morrison / bitbucketweb
534. moved samples notebook — rebeccae.morrison / bitbucketweb
535. new storage for first variation script — dabi / bitbucketweb
536. fixed storage adaptivity — dabi / bitbucketweb
537. fixing adaptivity for quadratures — dabi / bitbucketweb
538. working on examples for presentation — dabi / bitbucketweb
539. added output on refinement — dabi / bitbucketweb
540. improved total order multi index routine. — dabi / bitbucketweb
541. added output to adaptivity — dabi / bitbucketweb
542. getting data.. — dabi / bitbucketweb
543. running conditionals for alessio — dabi / bitbucketweb
544. improved postprocess — dabi / bitbucketweb
545. fixed adaptivity routine — dabi / bitbucketweb
546. right now the mpi design is a big mess... find an elegant way to get all — dabi / bitbucketweb
547. restructuring all mpi calls according to the new design — dabi / bitbucketweb
548. working on parallelization of objective functions — dabi / bitbucketweb
549. objective done for integrated exponential... — dabi / bitbucketweb
550. modifying regression routines. Todo also: fix the constraints in the — dabi / bitbucketweb
551. done with code rewriting. TODO: rewrite all tests and examples. — dabi / bitbucketweb
552. debuging: testing serial execution kl_divergence — dabi / bitbucketweb
553. testing minimization serial — dabi / bitbucketweb
554. minimization IE works. TODO: LS minimization and all parallel — dabi / bitbucketweb
555. all serial tests work — dabi / bitbucketweb
556. working on parallel tests — dabi / bitbucketweb
557. testing parallel on kl_minimization and L2_minimization — dabi / bitbucketweb
558. testing parallel on kl_minimization and L2_minimization — dabi / bitbucketweb
559. passing all tests — dabi / bitbucketweb
560. started with the documentation of MPI — dabi / bitbucketweb
561. going on with docs — dabi / bitbucketweb
562. fixed pdf/log_pdf for transprot map densities and going on with mpi — dabi / bitbucketweb
563. working on example — dabi / bitbucketweb
564. working on documentation — dabi / bitbucketweb
565. working on documentation — dabi / bitbucketweb
566. working on mpi examples — dabi / bitbucketweb
567. working on mpi examples.... — dabi / bitbucketweb
568. going on with mpi documentation. TODO: check examples... — dabi / bitbucketweb
569. updated examples — dabi / bitbucketweb
570. examples have been updated to use the new mpi interface — dabi / bitbucketweb
571. updated slurm script for examples — dabi / bitbucketweb
572. residual modifications to adaptivity routines — dabi / bitbucketweb
573. fixed bug in mpi_eval — dabi / bitbucketweb
574. working on examples — dabi / bitbucketweb
575. updated regression examples to use MPI — dabi / bitbucketweb
576. added action of hessian on routines and TransportMapBase. TODO: modify — dabi / bitbucketweb
577. action of the Hessian implemented for the kl-divergence and the l2 — dabi / bitbucketweb
578. finished last merge — dabi / bitbucketweb
579. working on 3hyper — dabi / bitbucketweb
580. fixed regression — dabi / bitbucketweb
581. fixed chacing of hessian. Now it is really not recomputed — dabi / bitbucketweb
582. fixed output hess — dabi / bitbucketweb
583. fixed typo in routines — dabi / bitbucketweb
584. batching implemented to be exthensively tested — dabi / bitbucketweb
585. working on unittests for l2_misfit — dabi / bitbucketweb
586. first test passed — dabi / bitbucketweb
587. adding tests — dabi / bitbucketweb
588. passing some of the tests... — dabi / bitbucketweb
589. misfit tests all pass — dabi / bitbucketweb
590. regression batching seems to work on unit test cases — dabi / bitbucketweb
591. almost ready to run 3hyper on cluster — dabi / bitbucketweb
592. almost ready to run 3hyper on cluster — dabi / bitbucketweb
593. fixed runner — dabi / bitbucketweb
594. removed data. use Dropbox folder for this — dabi / bitbucketweb
595. logging capabilities improved for both kl-divergence and regression — dabi / bitbucketweb
596. fixed scripts — dabi / bitbucketweb
597. fixes #63 — dabi / bitbucketweb
598. fixed serialization of the logger (un-pickable and thus removed from the — dabi / bitbucketweb
599. added curvature output on Hessian output (to check positive — dabi / bitbucketweb
600. mpi tutorial is done — dabi / bitbucketweb
601. working on cpp examples — dabi / bitbucketweb
602. updated stocvol analysis with new MPI — dabi / bitbucketweb
603. updated construction scripts — dabi / bitbucketweb
604. updated analysis — dabi / bitbucketweb
605. udated plotting for stoc vol — dabi / bitbucketweb
606. updated mpi-usage — dabi / bitbucketweb
607. re-activated var_diag_list — dabi / bitbucketweb
608. added debug code for Hessian conditioning — dabi / bitbucketweb
609. added no-marginals option in plotting — dabi / bitbucketweb
610. use gaussian graphs in algorithm — rebeccae.morrison / bitbucketweb
611. working with generated data — dabi / bitbucketweb
612. working on newly generated data — dabi / bitbucketweb
613. fixed analysis script — dabi / bitbucketweb
614. removed data folder durbin — dabi / bitbucketweb
615. updating adaptivity to new MPI — dabi / bitbucketweb
616. fixed merge with master. MPI functionalities updated — dabi / bitbucketweb
617. added possibility of pulling back through Laplace prior to adapt the map — dabi / bitbucketweb
618. improved postprocessing — dabi / bitbucketweb
619. added possibiltiy do inverse adaptivity — dabi / bitbucketweb
620. working on log-gauss Cox — dabi / bitbucketweb
621. added test for processes — dabi / bitbucketweb
622. working on log-cox densities — dabi / bitbucketweb
623. working on logcox — dabi / bitbucketweb
624. working on log-cox — dabi / bitbucketweb
625. working on setup of log gaussian cox — dabi / bitbucketweb
626. data generation done — dabi / bitbucketweb
627. working on log gaussian cox — dabi / bitbucketweb
628. plotting change in laplace postprocess — dabi / bitbucketweb
629. added pieces of grad_a_omega — rebeccae.morrison / bitbucketweb
630. testing new derivatives — rebeccae.morrison / bitbucketweb
631. cleaning before merge — rebeccae.morrison / bitbucketweb
632. fixes on the full transport maps — dabi / bitbucketweb
633. reorganizing examples — dabi / bitbucketweb
634. added Laplace scripts — dabi / bitbucketweb
635. restructuring examples — dabi / bitbucketweb
636. restructuring examples — dabi / bitbucketweb
637. restructuring stochastic volatility example — dabi / bitbucketweb
638. restructuring stochastic volatility — dabi / bitbucketweb
639. restructuring LogGaussCox — dabi / bitbucketweb
640. restructuring — dabi / bitbucketweb
641. working on LogGaussianCox postprocessing for generic maps — dabi / bitbucketweb
642. working on LogGaussianCox — dabi / bitbucketweb
643. started working on script for generic transport map construction — dabi / bitbucketweb
644. updated contributors list and author list in files — dabi / bitbucketweb
645. updated readme — dabi / bitbucketweb
646. updated readme — dabi / bitbucketweb
647. working on direct map script — dabi / bitbucketweb
648. started with xml specification of maps — dabi / bitbucketweb
649. delta method almost done, fibers incorrect in TransportMapBase — rebeccae.morrison / bitbucketweb
650. working on xml descriptors — dabi / bitbucketweb
651. working on xml descriptor parsers — dabi / bitbucketweb
652. updated authors and emails — dabi / bitbucketweb
653. added xml loader for tests — dabi / bitbucketweb
654. reduced dimension of linear map Hessian return — dabi / bitbucketweb
655. updated authors and emails... — dabi / bitbucketweb
656. working on constructor of linear span approximations — dabi / bitbucketweb
657. working on the XML schema... — dabi / bitbucketweb
658. working on the schema and validating it... — dabi / bitbucketweb
659. working on the definition of a syntax for the components — dabi / bitbucketweb
660. working on the definition of a syntax for the components — dabi / bitbucketweb
661. working on basis — dabi / bitbucketweb
662. added example structures — dabi / bitbucketweb
663. working on the parser in TriangularTransportMaps.py — dabi / bitbucketweb
664. working on the parser for IntegratedExpTriMap — dabi / bitbucketweb
665. updated author and contact in init file — dabi / bitbucketweb
666. parser.... — dabi / bitbucketweb
667. sprinting on LogGaussianCoxProcess. The script tmap-direct will need to — dabi / bitbucketweb
668. test was run successfully for nobs=30. the tmap-direct script is in — dabi / bitbucketweb
669. working on independent samplers — dabi / bitbucketweb
670. working on rejection sampler — dabi / bitbucketweb
671. working on samplers — dabi / bitbucketweb
672. working on effective sample size criteria... — dabi / bitbucketweb
673. ess implemented — dabi / bitbucketweb
674. working on postprocess scripts — dabi / bitbucketweb
675. bigger head map for log gaussian cox — dabi / bitbucketweb
676. working on the sampling of tmap — dabi / bitbucketweb
677. almost done with figures for Log Gauss Cox — dabi / bitbucketweb
678. working on Metropolis samples. Added h5py dependency — dabi / bitbucketweb
679. tests gradahessxpartialxd — rebeccae.morrison / bitbucketweb
680. one bug less to be fixed... — dabi / bitbucketweb
681. added test_functions — dabi / bitbucketweb
682. figures and scripts for log gauss cox are done — dabi / bitbucketweb
683. added batching for tmap-postprocess but needs to be improved — dabi / bitbucketweb
684. streamlining scripts for sequential inference postprocessing — dabi / bitbucketweb
685. heavy modification of the postprocess scripts for stoch vol. Sequential — dabi / bitbucketweb
686. scripts for paper working... — dabi / bitbucketweb
687. working on postprocessing plotting — dabi / bitbucketweb
688. merging — dabi / bitbucketweb
689. prepared plotting for paper — dabi / bitbucketweb
690. almost all figures are done — dabi / bitbucketweb
691. Christmas plots — dabi / bitbucketweb
692. working on figures — dabi / bitbucketweb
693. working on parsing of IntExpNonLinearHeadMap-5d.xml — dabi / bitbucketweb
694. working on parsing of IntExpNonLinearHeadMap-5d.xml — dabi / bitbucketweb
695. working on functional approximations. Allow for the use of — dabi / bitbucketweb
696. added the approx layer in order to mimic the class hierarchy — dabi / bitbucketweb
697. think a better design for tensorized/non-tensorized basis... — dabi / bitbucketweb
698. working on parsing of functionals — dabi / bitbucketweb
699. working on tensorization of basis.... — dabi / bitbucketweb
700. moving on to the parsing of basis — dabi / bitbucketweb
701. constructor works for IntExpNonLinearHeadMap-5d.xml and — dabi / bitbucketweb
702. removed HardVars which is cretated at sdist time — dabi / bitbucketweb
703. added creation of hardcoded variables (xml schemes) at install and — dabi / bitbucketweb
704. working on serializing xml unit tests. — dabi / bitbucketweb
705. figure out how to define classes on the fly — dabi / bitbucketweb
706. full order works — dabi / bitbucketweb
707. monotonic lin span approximation get instantiated, but we need to add a — dabi / bitbucketweb
708. tolerance computed with delta method — rebeccae.morrison / bitbucketweb
709. working on RadialBasisFunctions support... Maybe we need to interface — dabi / bitbucketweb
710. loading from xml works, but multi-index loading and xml storing — dabi / bitbucketweb
711. construction of multi-idx map from xml works — dabi / bitbucketweb
712. working on tests for scripts — dabi / bitbucketweb
713. done with the tests for the scripts — dabi / bitbucketweb
714. started working on integrated squared approximation — dabi / bitbucketweb
715. working on test_transportmaps inverse.. — dabi / bitbucketweb
716. working on kl divergence tests — dabi / bitbucketweb
717. working on tests and examples — dabi / bitbucketweb
718. test_xml works — dabi / bitbucketweb
719. removed Full and Total order approximations. Now they are all — dabi / bitbucketweb
720. starting the implementation of the integrated squared linear span — dabi / bitbucketweb
721. working on the intsq approximation — dabi / bitbucketweb
722. going on... — dabi / bitbucketweb
723. progressing... — dabi / bitbucketweb
724. we are over the hill.. — dabi / bitbucketweb
725. Class IntegratedSquaredParametricFunctionApproximation done. TODO: — dabi / bitbucketweb
726. test_transportmaps pass — dabi / bitbucketweb
727. working on minimization tests... something wrong with batching.. — dabi / bitbucketweb
728. working on int sq — dabi / bitbucketweb
729. interfacing with PosDefConstSquaredExtHermitePhysicistsFunction — dabi / bitbucketweb
730. something is wrong with the pos def squared implementation... — dabi / bitbucketweb
731. working on test_transports for new Inetgrated Squared approximations — dabi / bitbucketweb
732. squared const ext hermite prob func works but slow. To be profiled — dabi / bitbucketweb
733. integrated squared is almost ready. Implementation sufficient for merge — dabi / bitbucketweb
734. ordering and post-processing — rebeccae.morrison / bitbucketweb
735. added functions needed for variance of omega, for algebraic basis — rebeccae.morrison / bitbucketweb
736. added n_edges to graphs and normalized delta plots — rebeccae.morrison / bitbucketweb
737. fixed postprocess script — dabi / bitbucketweb
738. fixed input/raw_input — dabi / bitbucketweb
739. working on additional functions for list composite map — dabi / bitbucketweb
740. working on hess_x — dabi / bitbucketweb
741. implemented ListCompositeTransportMap. It's missing some — dabi / bitbucketweb
742. imporved documentation tmap-direct — dabi / bitbucketweb
743. cleaning: mapsFromSamples dir — rebeccae.morrison / bitbucketweb
744. working on scripts interface — dabi / bitbucketweb
745. working on help for scripts — dabi / bitbucketweb
746. working on scripts — dabi / bitbucketweb
747. working on scripts — dabi / bitbucketweb
748. algorithm with graphs is now test file — rebeccae.morrison / bitbucketweb
749. working on postprocessing scripts — dabi / bitbucketweb
750. fixed disclaimer LGPL — dabi / bitbucketweb
751. tests work for the scripts in place. start docs. — dabi / bitbucketweb
752. restructured documentation. Prepared for scripts documentation — dabi / bitbucketweb
753. working on documentation of cli — dabi / bitbucketweb
754. working on bod — dabi / bitbucketweb
755. fixed references and working on bod — dabi / bitbucketweb
756. working on unbiased samplers — dabi / bitbucketweb
757. working on unbiased sampling — dabi / bitbucketweb
758. data generation for bod — dabi / bitbucketweb
759. done with bod — dabi / bitbucketweb
760. done with bod — dabi / bitbucketweb
761. working on xml docs — dabi / bitbucketweb
762. xml docs done — dabi / bitbucketweb
763. xml done — dabi / bitbucketweb
764. xml done — dabi / bitbucketweb
765. gumbel ready for presentation too — dabi / bitbucketweb
766. fixed gumbel also for documentation — dabi / bitbucketweb
767. added grad_x_inverse and log_deg_grad_x_inverse methods — dabi / bitbucketweb
768. working on bod presentation — dabi / bitbucketweb
769. going on with bod presentation — dabi / bitbucketweb
770. almost done with bod — dabi / bitbucketweb
771. bod for presentation ready — dabi / bitbucketweb
772. done with tm examples — dabi / bitbucketweb
773. done with xml — dabi / bitbucketweb
774. started with cli — dabi / bitbucketweb
775. started working on the stochastic volatility density... — dabi / bitbucketweb
776. started with writing of classes for decomposable densities — dabi / bitbucketweb
777. started with writing of classes for decomposable densities — dabi / bitbucketweb
778. going on with densities — dabi / bitbucketweb
779. working on classes for sequential inference — dabi / bitbucketweb
780. working on rewriting stocvol densities — dabi / bitbucketweb
781. wrapping up stocvol density — dabi / bitbucketweb
782. testing new implementation! — dabi / bitbucketweb
783. equivalent density! TODO: MarkovComponent — dabi / bitbucketweb
784. working on markov component. — dabi / bitbucketweb
785. working on markov comp — dabi / bitbucketweb
786. one residual error in the hessian... — dabi / bitbucketweb
787. The density is set up and ready to be used — dabi / bitbucketweb
788. working on documentation and refactored examples of densities — dabi / bitbucketweb
789. documenting stoc volatility — dabi / bitbucketweb
790. going on with sequential inference example — dabi / bitbucketweb
791. working on docs for stocvol example — dabi / bitbucketweb
792. reorg, now with dirs — rebeccae.morrison / bitbucketweb
793. fix directory for monte carlo run — rebeccae.morrison / bitbucketweb
794. adding data dir — rebeccae.morrison / bitbucketweb
795. removed tabulate — dabi / bitbucketweb
796. fixed import for python2 — dabi / bitbucketweb
797. added missing densities — dabi / bitbucketweb
798. removed some example densities for now — dabi / bitbucketweb
799. acme data clean — rebeccae.morrison / bitbucketweb
800. working on stoc vol example — dabi / bitbucketweb
801. working on first step stoc vol — dabi / bitbucketweb
802. working on first step stoc vol — dabi / bitbucketweb
803. almost done with stoch vol — dabi / bitbucketweb
804. doing stoc vol post processing — dabi / bitbucketweb
805. sequential inference needs a longer example — dabi / bitbucketweb
806. started with SeqHMM integrator — dabi / bitbucketweb
807. finished sequential inference... — dabi / bitbucketweb
808. fixed imports of integrator. TODO: documentation of the integrator class — dabi / bitbucketweb
809. fixed typos in examples — dabi / bitbucketweb
810. added svg data assimilation — dabi / bitbucketweb
811. added inkscape preamble — dabi / bitbucketweb
812. updated figures and notation in sequential inference — dabi / bitbucketweb
813. fixed pictures — dabi / bitbucketweb
814. fixed bod — dabi / bitbucketweb
815. working on filtering — dabi / bitbucketweb
816. done with getting filtering out — dabi / bitbucketweb
817. ok with filtering of stoc vol — dabi / bitbucketweb
818. added the script for sequential inference — dabi / bitbucketweb
819. first implementation of sampler works on postprocessing — dabi / bitbucketweb
820. added stochastic volatility folder — dabi / bitbucketweb
821. adding ess estimation in unbiased sampling script — dabi / bitbucketweb
822. postprocess sampling fixed — dabi / bitbucketweb
823. working on command line commands — dabi / bitbucketweb
824. working on command line documentation! — dabi / bitbucketweb
825. working on command line documentation! — dabi / bitbucketweb
826. working on cli — dabi / bitbucketweb
827. going on with cli — dabi / bitbucketweb
828. working on cli postprocess — dabi / bitbucketweb
829. working on cli postprocess — dabi / bitbucketweb
830. cli done — dabi / bitbucketweb
831. dummy file for volatility data — rebeccae.morrison / bitbucketweb
832. added missing file — dabi / bitbucketweb
833. fixing stile of documentation — dabi / bitbucketweb
834. refactored Density->Distribution — dabi / bitbucketweb
835. removed unused functions in Diagnostics.Plotting — dabi / bitbucketweb
836. checked default constructors. fixes #34 — dabi / bitbucketweb
837. added deprecation flag for old sub-module Denisities — dabi / bitbucketweb
838. fixed logging of solving stats — dabi / bitbucketweb
839. removed default dependency on optional packages — dabi / bitbucketweb
840. disabled parallel tests if MPI is not supported — dabi / bitbucketweb
841. downgraded documentation to TM 1.0 — dabi / bitbucketweb
842. removed circular import in all the submodules — dabi / bitbucketweb
843. local merge — dabi / bitbucketweb
844. installation goes through on MAC. Going on with documentation — dabi / bitbucketweb
845. working on intro — dabi / bitbucketweb
846. checking for broken links — dabi / bitbucketweb
847. fixing readme — dabi / bitbucketweb
848. fixed wrong merge.. — dabi / bitbucketweb
849. working on alinged-marginals. Check on quadratures output as well. — dabi / bitbucketweb
850. added marginal plotting — dabi / bitbucketweb
851. sequential-tm with restart — dabi / bitbucketweb
852. tmap-sequential-tm can now re-start. Added verbose options and — dabi / bitbucketweb
853. working on postprocess for sequential algorithm — dabi / bitbucketweb
854. added postprocess for sequential inference — dabi / bitbucketweb
855. done with scripts — dabi / bitbucketweb
856. working on documentation of inverse from samples — dabi / bitbucketweb
857. working on inverse sparse transport — dabi / bitbucketweb
858. added inverse stochastic volatility example — dabi / bitbucketweb
859. added figures for cli.ipynb — dabi / bitbucketweb
860. working on class diagram — dabi / bitbucketweb
861. working on the api — dabi / bitbucketweb
862. removed autosummary — dabi / bitbucketweb
863. included inheritance graph. Fixes #27 — dabi / bitbucketweb
864. fixed dictionary get for python2. Fixes #75 — dabi / bitbucketweb
865. updated version 1.0.0b1 and copyright — dabi / bitbucketweb
866. updated info — dabi / bitbucketweb
867. working on upload script — dabi / bitbucketweb
868. working on release testpypi — dabi / bitbucketweb
869. modified warning for non-supported features — dabi / bitbucketweb
870. fixed linking to SpectralToolbox. Now it is done at first import — dabi / bitbucketweb
871. fixed issue in frozen distributions. v1.0.0b4 — dabi / bitbucketweb
872. fixed xml linking — dabi / bitbucketweb
873. fixed test_xml and test_scripts — dabi / bitbucketweb
874. fixed some settings for unit tests failing on kl-divergence due to fd — dabi / bitbucketweb
875. refactoring Examples for release — dabi / bitbucketweb
876. cleaning up before release — rebeccae.morrison / bitbucketweb
877. working on mirroring — dabi / bitbucketweb
878. after moving — rebeccae.morrison / bitbucketweb
879. working on public mirroring — dabi / bitbucketweb
880. working on public mirroring — dabi / bitbucketweb
881. added deprecated frozen denisties — dabi / bitbucketweb
882. working on mirror — dabi / bitbucketweb
883. workin on mirroring — dabi / bitbucketweb
884. fixed (maybe) base_density/base_distribution inconsistency — dabi / bitbucketweb
885. fixed (again maybe) base_density/base_distribution inconsistency — dabi / bitbucketweb
886. mirroring script ready — dabi / bitbucketweb
887. fixed readme — dabi / bitbucketweb
888. bitbucket-pipelines.yml created online with Bitbucket — dabi / bitbucketweb
889. bitbucket-pipelines.yml edited online with Bitbucket — dabi / bitbucketweb
890. bitbucket-pipelines.yml edited online with Bitbucket — dabi / bitbucketweb
891. bitbucket-pipelines.yml edited online with Bitbucket — dabi / bitbucketweb
892. bitbucket-pipelines.yml edited online with Bitbucket — dabi / bitbucketweb
893. bitbucket-pipelines.yml edited online with Bitbucket — dabi / bitbucketweb
894. bitbucket-pipelines.yml edited online with Bitbucket — dabi / bitbucketweb
895. bitbucket-pipelines.yml edited online with Bitbucket — dabi / bitbucketweb
896. bitbucket-pipelines.yml edited online with Bitbucket — dabi / bitbucketweb
897. bitbucket-pipelines.yml deleted online with Bitbucket — dabi / bitbucketweb
898. working on jenkins script — dabi / bitbucketweb
899. testing push with jenkins — dabi / bitbucketweb
900. updated jenkins script — dabi / bitbucketweb
901. fixing pip for long path.. not really needed for tests on bitbucket — dabi / bitbucketweb
902. jenkins... — dabi / bitbucketweb
903. jenkins... — dabi / bitbucketweb
904. jenkins... — dabi / bitbucketweb
905. jenkins... — dabi / bitbucketweb
906. jenkins... — dabi / bitbucketweb
907. jenkins... — dabi / bitbucketweb
908. jenkins... — dabi / bitbucketweb
909. jenkins... — dabi / bitbucketweb
910. jenkins... — dabi / bitbucketweb
911. jenkins... — dabi / bitbucketweb
912. jenkins... — dabi / bitbucketweb
913. Jenkins config: testing test_scripts — dabi / bitbucketweb
914. fixed logging of solving stats — dabi / bitbucketweb
915. Jenkins tests — dabi / bitbucketweb
916. Jenkins... — dabi / bitbucketweb
917. Jenkins... — dabi / bitbucketweb
918. Jenkins... — dabi / bitbucketweb
919. Jenkins... — dabi / bitbucketweb
920. Jenkins... — dabi / bitbucketweb
921. Jenkins... — dabi / bitbucketweb
922. Jenkins... — dabi / bitbucketweb
923. Jenkins... — dabi / bitbucketweb
924. Jenkins... — dabi / bitbucketweb
925. Jenkins: exit(1) if packages failed — dabi / bitbucketweb
926. removed cached dir — dabi / bitbucketweb
927. Jenkins... working on setup — dabi / bitbucketweb
928. jenkins.. — dabi / bitbucketweb
929. jenkins.. — dabi / bitbucketweb
930. jenkins... — dabi / bitbucketweb
931. jenkins... — dabi / bitbucketweb
932. jenkins testing all — dabi / bitbucketweb
933. updated email — dabi / bitbucketweb
934. removed e-mail contact — dabi / bitbucketweb
935. updated readme — dabi / bitbucketweb
936. updated readme — dabi / bitbucketweb
937. updated readme — dabi / bitbucketweb
938. reduce verbosity in tests — dabi / bitbucketweb
939. updated scripts and logging — dabi / bitbucketweb
940. fixed logging — dabi / bitbucketweb
941. removed MPI support for macys-Sierra — dabi / bitbucketweb
942. fixed log levels.. — dabi / bitbucketweb
943. fixed errors in grad_a_hess_x and grad_a_hess_x_log_det_grad_x — dabi / bitbucketweb
944. removed tests for grad_a_hess_x_log_det_grad_x. Filed issue #76 — dabi / bitbucketweb
945. updated parallelization and fixed failing test in test_kl_divergence — dabi / bitbucketweb
946. fixing test_kl_divergence (maybe) — dabi / bitbucketweb
947. turning MPI=True on Macys-Sierra — dabi / bitbucketweb
948. fixed linear map in IS kl_divergence — dabi / bitbucketweb
949. added jenkins tests for testpypi — dabi / bitbucketweb
950. modified linear2d test in order to make it more amenable for PushForward — dabi / bitbucketweb
951. simplified setup.py (standardized) — dabi / bitbucketweb
952. the user is now required to pre-install numpy — dabi / bitbucketweb
953. fixed jenkins script — dabi / bitbucketweb
954. removed hardvars — dabi / bitbucketweb
955. removed hardvars — dabi / bitbucketweb
956. removed pushforward kl_div tests — dabi / bitbucketweb
957. split serial and parallel tests — dabi / bitbucketweb
958. testing serial — dabi / bitbucketweb
959. added mpi option — dabi / bitbucketweb
960. fixed check on mpi in jenkins — dabi / bitbucketweb
961. added lag on mpi tests in order to accommodate for closing and opening — dabi / bitbucketweb
962. set unique random seed=1 — dabi / bitbucketweb
963. adding badges to the documentation — dabi / bitbucketweb
964. disabled MPI on sierra — dabi / bitbucketweb
965. relaxed check on l2 minimization tolerance — dabi / bitbucketweb
966. updated badges and upload code — dabi / bitbucketweb
967. lower tolerance on transportmap_distributions — dabi / bitbucketweb
968. fixed namespace and restored tolerance in transportmap_distributions — dabi / bitbucketweb
969. updating index — dabi / bitbucketweb
970. added verbose output for failed finite difference — dabi / bitbucketweb
971. added verbose output for failed finite difference — dabi / bitbucketweb
972. set integrated squared to linear for test_transportmap_distributions — dabi / bitbucketweb
973. extending readme — dabi / bitbucketweb
974. README.rst edited online with Bitbucket — dabi / bitbucketweb
975. README.rst edited online with Bitbucket — dabi / bitbucketweb