Started 4 yr 5 mo ago
Took 9 min 34 sec on reynolds

Build gcc,reynolds,python2,virtualenv (Jun 6, 2018, 3:15:26 PM)

Changes
  1. example on Gumbel 1d (details / bitbucketweb)
  2. started with the Helmholtz equation (details / bitbucketweb)
  3. integrated SING into TransportMaps (details / bitbucketweb)
  4. cleaning SING files (details / bitbucketweb)
  5. l1 tests and plotting scripts (details / bitbucketweb)
  6. working on Helmholtz example from Ghattas' paper (details / bitbucketweb)
  7. working on Helmholtz (details / bitbucketweb)
  8. starting to work on actual probabilistic model (details / bitbucketweb)
  9. renaming some sun_sing files (details / bitbucketweb)
  10. updating run_sing files to run with SI.SING (details / bitbucketweb)
  11. actually updating to run with SI.SING (ignore last commit) (details / bitbucketweb)
  12. testing l1 (details / bitbucketweb)
  13. l1 regularization (details / bitbucketweb)
  14. Updated regularized map - SING now runs with 2 types of reg and no reg. (details / bitbucketweb)
  15. relaxed rademacher, butterfly distribution, and more properties of (details / bitbucketweb)
  16. relaxed rademacher uses uniform over (-1,1), not (0,1) (details / bitbucketweb)
  17. node ordering fix (details / bitbucketweb)
  18. changing parameters in Helmholtz (details / bitbucketweb)
  19. added stub solver for EIT problem (details / bitbucketweb)
  20. working on surface gradient (details / bitbucketweb)
  21. working on CEM (details / bitbucketweb)
  22. fixed EIT working on CEM (details / bitbucketweb)
  23. plotting scripts for nips (details / bitbucketweb)
  24. turned hessian off in sing (details / bitbucketweb)
  25. mc studies 1step algs (details / bitbucketweb)
  26. More MC Studies for SING (details / bitbucketweb)
  27. working on models (details / bitbucketweb)
  28. No electrodes model works (details / bitbucketweb)
  29. working on discretized model (details / bitbucketweb)
  30. working on discretized model (details / bitbucketweb)
  31. gmsh mesh generation for discretized test (details / bitbucketweb)
  32. working on complete model (details / bitbucketweb)
  33. starting to work on adjoint equations (details / bitbucketweb)
  34. messed up with no-electrodes model.. (details / bitbucketweb)
  35. working on fast sensor function (details / bitbucketweb)
  36. fixed sensor expression (details / bitbucketweb)
  37. working on Dirichlet to Neumann model (details / bitbucketweb)
  38. working on adjoint for no electrode model (details / bitbucketweb)
  39. adjoint done (details / bitbucketweb)
  40. gradient and Hessian working (details / bitbucketweb)
  41. setting up the posterior distribution (details / bitbucketweb)
  42. working on likelihood functions (details / bitbucketweb)
  43. working on posterior distribution (details / bitbucketweb)
  44. storage/loading of distribution works (details / bitbucketweb)
  45. working on action of Hessian (details / bitbucketweb)
  46. working on action_hess_a for transport map distributions (details / bitbucketweb)
  47. working on minimization of kl divergence using action of the Hessian (details / bitbucketweb)
  48. working on kl minimization tests (details / bitbucketweb)
  49. unit tests are passing. todo: caching in Likelihood to avoid extra (details / bitbucketweb)
  50. the distribution object is now pre-broadcasted to the children in (details / bitbucketweb)
  51. fixed test_kl_divergence (details / bitbucketweb)
  52. working on caching of Likelihood evaluations (details / bitbucketweb)
  53. fixed init function (details / bitbucketweb)
  54. The action of the Hessian is ready. Fixes #31. Caching issues reserved (details / bitbucketweb)
  55. introducing cached and counted decorators (details / bitbucketweb)
  56. adding counting output (details / bitbucketweb)
  57. caching to be finished in TransportMaps and Maps in general. Then I need (details / bitbucketweb)
  58. still working on maps... (details / bitbucketweb)
  59. working on distributions (details / bitbucketweb)
  60. testing caching. todo: caching in optimization problems (details / bitbucketweb)
  61. added caching and counting wherever needed (maybe missing some spots). (details / bitbucketweb)
  62. working on caching in Hessian. Todo: update and run unittests (details / bitbucketweb)
  63. adding reset counters functionalities (details / bitbucketweb)
  64. counting and resetting works. Caching also seems to work. TODO: (details / bitbucketweb)
  65. caching does what is supposed to do! (details / bitbucketweb)
  66. added manual test for caching and counting (details / bitbucketweb)
  67. working on caching minimization routine (details / bitbucketweb)
  68. working on unit tests for kl-divergence (details / bitbucketweb)
  69. working on test_kl_divergence.py (details / bitbucketweb)
  70. fixing  an error at a time... (details / bitbucketweb)
  71. kl_min tests work! (details / bitbucketweb)
  72. fixing all unit tests (details / bitbucketweb)
  73. porting MPI implementation to mpi_map v2.0 (details / bitbucketweb)
  74. porting to mpi_map v2.0 completed. ToBeTested!! (details / bitbucketweb)
  75. mpi_map v2 integrated and passing unit tests (details / bitbucketweb)
  76. gathering of ncalls and nevals count at the end of optimization done (details / bitbucketweb)
  77. passes unit tests (details / bitbucketweb)
  78. now pointing to MPI_Pool_v2 in mpi_map v2.0 (details / bitbucketweb)
  79. returning latest cache within log dictionary (details / bitbucketweb)
  80. fixed py2/py3 issue with cached decorator (details / bitbucketweb)
  81. fixed py2/py3 issue with cached decorator (details / bitbucketweb)
  82. fixed py2/py3 issue with cached decorator (details / bitbucketweb)
  83. fixing py2/py3 handling of *args and **kwargs (PEP3102) (details / bitbucketweb)
  84. working on target distribution (details / bitbucketweb)
  85. working on mpi evaluation of target density (details / bitbucketweb)
  86. working on constant field data generation and parallel implementation (details / bitbucketweb)
  87. working on speeding up function and gradient evaluatiions (details / bitbucketweb)
  88. implemented fungrad (details / bitbucketweb)
  89. working of action of Hessian (details / bitbucketweb)
  90. mpi implementation not working... (details / bitbucketweb)
  91. staring solving simple problems.. (details / bitbucketweb)
  92. working on constant field problem and parallelization (details / bitbucketweb)
  93. working on the problem set up (details / bitbucketweb)
  94. data generation for constant field works (details / bitbucketweb)
  95. working on adjoint for field (details / bitbucketweb)
  96. fixed gradient! (details / bitbucketweb)
  97. working on Hessian of EIT problem (details / bitbucketweb)
  98. working on hessian (details / bitbucketweb)
  99. fixed counter reset in some classes (details / bitbucketweb)
  100. fixing regularization (details / bitbucketweb)
  101. fixed caching for tuple_grad_a (details / bitbucketweb)
  102. fixed some issues with tests and new counting decorators (details / bitbucketweb)
  103. action of the Hessian for EIT works. To be integrated in distribution (details / bitbucketweb)
  104. eit hessian works with caching of solution and adjoints (details / bitbucketweb)
  105. EIT field distribution works with MPI (details / bitbucketweb)
  106. added possibility to add real fields by expression (details / bitbucketweb)
  107. disabled plotting if not available (details / bitbucketweb)
  108. distributions work on cluster (details / bitbucketweb)
  109. made EIT solver into a class (details / bitbucketweb)
  110. working on validators (details / bitbucketweb)
  111. working on saa (details / bitbucketweb)
  112. implementing gradient based validators (details / bitbucketweb)
  113. validators... (details / bitbucketweb)
  114. working on adaptivity algorithm (details / bitbucketweb)
  115. working on the adaptivity algorithm (details / bitbucketweb)
  116. adding adaptivity options to tmap-tm (details / bitbucketweb)
  117. working on launching script tmap-tm (details / bitbucketweb)
  118. changing builder classes to imbed parameters and take distributions on (details / bitbucketweb)
  119. going through banana example (details / bitbucketweb)
  120. working on adaptivity on banana (details / bitbucketweb)
  121. adaptivity on banana almost work (details / bitbucketweb)
  122. adaptivity works on banana. a lot to do yet... (details / bitbucketweb)
  123. improving parallelization (details / bitbucketweb)
  124. splitted first variation computation for better parallelization (details / bitbucketweb)
  125. adaptivity works on banana without hyper (details / bitbucketweb)
  126. working on low-rank approximation of Hessians (details / bitbucketweb)
  127. working on laplace approximation for Bayesian inverse problems, where (details / bitbucketweb)
  128. working on low-rank approximation of covariance in bayesian problem (details / bitbucketweb)
  129. working on low-rank approximation (details / bitbucketweb)
  130. added logging information in postprocessing script (details / bitbucketweb)
  131. low-rank Laplace approximation works (details / bitbucketweb)
  132. applying Laplace to EIT (details / bitbucketweb)
  133. working on composition of Likelihood with maps (details / bitbucketweb)
  134. working on composition of Likelihood with maps (details / bitbucketweb)
  135. composition of functions and map now is possible. working on laplace of (details / bitbucketweb)
  136. working on laplace approximation of EIT (details / bitbucketweb)
  137. debugging action of Hessian (details / bitbucketweb)
  138. checking hessian action.. (details / bitbucketweb)
  139. working on finite difference test for Hessian (details / bitbucketweb)
  140. checking Hessian for distribution (details / bitbucketweb)
  141. fixed withening script. Now action of Hessian works with MPI (details / bitbucketweb)
  142. working on EIT adaptivity (details / bitbucketweb)
  143. added missing functions to LinearTransportMap. Added unit tests for it (details / bitbucketweb)
  144. modified caching of EIT solutions so that the cache is now pickable. (details / bitbucketweb)
  145. added verbosity option in adaptivity algorithms and fixed bug in action (details / bitbucketweb)
  146. added intermediate storage capability for adaptivity (details / bitbucketweb)
  147. added output for lower and upper bounds in saa (details / bitbucketweb)
  148. fixed bug in tmap-tm and in test_distribution.py for EIT (details / bitbucketweb)
  149. added distributed sampling for MC sampling in minimize_kl_divergence (details / bitbucketweb)
  150. fixed sampling for inverse maps from samples (disabled distributed (details / bitbucketweb)
  151. fixed distributed sampling for linear span kl minimization (details / bitbucketweb)
  152. fixed action Hessian with regularization (details / bitbucketweb)
  153. simplified regularization of action hessian regularization (details / bitbucketweb)
  154. fixed relative tolerance in validator (details / bitbucketweb)
  155. fixed relative tolerance in validator (details / bitbucketweb)
  156. remove unnecessary output form EIT (details / bitbucketweb)
  157. changed active variable indicator to E[|x|] (details / bitbucketweb)
  158. tryna generate non-gaussian data (details / bitbucketweb)
  159. working on reload feature for tmap-tm (details / bitbucketweb)
  160. reloading done for first variation adaptivity. to be checked in other (details / bitbucketweb)
  161. added some output to First variation algorithm (details / bitbucketweb)
  162. fixed restarting and grad_x for target in EIT (details / bitbucketweb)
  163. added field full_basis_list to function approximations, to be used in (details / bitbucketweb)
  164. fixed adaptivity accordingly to previous full_basis_list at the function (details / bitbucketweb)
  165. running aerostruct and copula data (details / bitbucketweb)
  166. committing data samples for copula data (details / bitbucketweb)
  167. fixed first variation computation (details / bitbucketweb)
  168. added plot sample for post process in EIT (details / bitbucketweb)
  169. added a non-gaussian chain dataset (details / bitbucketweb)
  170. added full_basis_list feature to xml map structure loading (details / bitbucketweb)
  171. fixed full_basis_list to save in memory allocation (details / bitbucketweb)
  172. minor testing datasets changes (details / bitbucketweb)
  173. check for product distribution (details / bitbucketweb)
  174. removed matplotlib from imports (details / bitbucketweb)
  175. scikit-sparse reqs (details / bitbucketweb)
  176. changed googleanalytics requirements (details / bitbucketweb)
  177. starting jupyter notebook for sing (details / bitbucketweb)
  178. looking at copula data inverse covariance (details / bitbucketweb)
  179. working on coarser test case (details / bitbucketweb)
  180. fixed several bugs in adaptivity and tests (details / bitbucketweb)
  181. fixed get state in first variation builder (details / bitbucketweb)
  182. added line search options in tmap-tm (details / bitbucketweb)
  183. fixed kladaptivity serialization and regression regularization (details / bitbucketweb)
  184. fixed gx_gt_kl batched evaluation (details / bitbucketweb)
  185. added sing notebook example (details / bitbucketweb)
  186. fixing adaptivity here and there.. (details / bitbucketweb)
  187. integrated documentation for SING algorithm (details / bitbucketweb)
  188. added postprocessing functionalities for adaptivity (details / bitbucketweb)
  189. added double circle phantom (details / bitbucketweb)
  190. fixed store function in tmap-tm (details / bitbucketweb)
  191. added argument for line search delta (details / bitbucketweb)
  192. added delta parameter for line search (details / bitbucketweb)
  193. fixed documentation SING (details / bitbucketweb)
  194. fixing unit tests; (details / bitbucketweb)
  195. fixed laplace approximation starting point (details / bitbucketweb)
  196. documenting fv adaptivity (details / bitbucketweb)
  197. preparing release v2.0b0 (details / bitbucketweb)
  198. v2.0b0: ready for unit-testing (details / bitbucketweb)
  199. fixed matplotlib dependence (details / bitbucketweb)
  200. fixed process_time PyV3 PyV2 (details / bitbucketweb)
  201. fixed processtime name (details / bitbucketweb)
  202. fixing bugs for release (details / bitbucketweb)
  203. working to fix grax_gradt_kl (details / bitbucketweb)
  204. fixed grad_x of first variation (details / bitbucketweb)
  205. subtract identity_coeffs + l1_reg to component kl (details / bitbucketweb)
  206. removed dependency on FileNotFoundError for compatibility with py2 (details / bitbucketweb)
  207. fixed compatibility issue with py2 (details / bitbucketweb)
  208. removed unnecessary folders in Examples and updated mirroring script (details / bitbucketweb)
  209. added algorithms documentation section (details / bitbucketweb)
  210. updated script for public mirroring (details / bitbucketweb)
  211. throwing an error if ders!=[0,1] used in decoupled LinearSpan min_kl (details / bitbucketweb)

Started by upstream project TransportMaps-private-hotfixes build number 12
originally caused by:

Revision: 6dfc493b0462beb51c31bd4bca882b92ae27efd4
Repository: git@bitbucket.org:dabi86/transportmaps-private.git
  • refs/remotes/origin/hotfixes/master