Started by BitBucket push by dabi86Started by BitBucket push by dabi86126dfc493b0462beb51c31bd4bca882b92ae27efd46dfc493b0462beb51c31bd4bca882b92ae27efd4refs/remotes/origin/hotfixes/master6dfc493b0462beb51c31bd4bca882b92ae27efd46dfc493b0462beb51c31bd4bca882b92ae27efd4refs/remotes/origin/hotfixes/master6dfc493b0462beb51c31bd4bca882b92ae27efd46dfc493b0462beb51c31bd4bca882b92ae27efd4refs/remotes/origin/hotfixes/mastergit@bitbucket.org:dabi86/transportmaps-private.gitfalse#121019552610332817TransportMaps-private-hotfixes #1212falsefalse1264576SUCCESS1528312526070https://acdl.mit.edu/csi/job/TransportMaps-private-hotfixes/12/reynoldsExamples/rsb-test/example1.pya3e42dcee33ac89811e0c423284e2eacf617c52b1469202929000https://acdl.mit.edu/csi/user/rsbrsbrsb@mit.eduexample on Gumbel 1d 2016-07-22 11:55:29 -0400a3e42dcee33ac89811e0c423284e2eacf617c52bexample on Gumbel 1daddExamples/rsb-test/example1.pyExamples/research/Helmholtz/Solver.pya8501e5fde9a04797928ea64eec734a3492ecbe81495061070000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itstarted with the Helmholtz equation 2017-05-17 18:44:30 -0400a8501e5fde9a04797928ea64eec734a3492ecbe8started with the Helmholtz equationaddExamples/research/Helmholtz/Solver.py.gitignoreTransportMaps/Algorithms/SparsityIdentification/__init__.pyTransportMaps/Distributions/FrozenDistributions.pyTransportMaps/Distributions/DistributionBase.pyExamples/research/sparsity/algorithm/run_sing_stochvol.pyTransportMaps/Maps/TransportMapBase.pyExamples/research/sparsity/post_processing/pp_alg_errors-cse.pyExamples/research/sparsity/algorithm/Algorithm.py.oldExamples/research/sparsity/functions/ExtraDensities.pyTransportMaps/Algorithms/SparsityIdentification/GeneralizedPrecision.pyTransportMaps/Algorithms/SparsityIdentification/SparsityIdentificationNonGaussian.pyExamples/research/sparsity/algorithm/run_stoch_vol.pyExamples/research/sparsity/graphs/GaussianGraphs.pyTransportMaps/Algorithms/SparsityIdentification/NodeOrdering.pyTransportMaps/Algorithms/__init__.pyExamples/research/sparsity/functions/NodeOrdering.pyExamples/research/sparsity/functions/NodeOrdering.py.oldExamples/research/sparsity/algorithm/Algorithm.py9297713e7be317f4bb4f7b2ee55649e1adede8e31498602034000https://acdl.mit.edu/csi/user/rebeccae.morrisonrebeccae.morrisonrebeccae.morrison@gmail.comintegrated SING into TransportMaps 2017-06-27 18:20:34 -04009297713e7be317f4bb4f7b2ee55649e1adede8e3integrated SING into TransportMapseditExamples/research/sparsity/algorithm/run_sing_stochvol.pyeditExamples/research/sparsity/algorithm/run_stoch_vol.pyaddTransportMaps/Algorithms/SparsityIdentification/__init__.pyeditTransportMaps/Distributions/FrozenDistributions.pyeditExamples/research/sparsity/graphs/GaussianGraphs.pyeditExamples/research/sparsity/functions/ExtraDensities.pydeleteExamples/research/sparsity/algorithm/Algorithm.pyedit.gitignoreaddTransportMaps/Algorithms/SparsityIdentification/GeneralizedPrecision.pyeditTransportMaps/Algorithms/__init__.pyeditTransportMaps/Distributions/DistributionBase.pyaddExamples/research/sparsity/algorithm/Algorithm.py.olddeleteExamples/research/sparsity/functions/NodeOrdering.pyaddTransportMaps/Algorithms/SparsityIdentification/SparsityIdentificationNonGaussian.pydeleteExamples/research/sparsity/post_processing/pp_alg_errors-cse.pyaddTransportMaps/Algorithms/SparsityIdentification/NodeOrdering.pyaddExamples/research/sparsity/functions/NodeOrdering.py.oldeditTransportMaps/Maps/TransportMapBase.pyTransportMaps/Algorithms/SparsityIdentification/NodeOrdering.pyTransportMaps/Algorithms/SparsityIdentification/SparsityIdentificationNonGaussian.pyTransportMaps/Algorithms/SparsityIdentification/GeneralizedPrecision.py094afa23dc637c4539c0d291ebc460b6276f65fd1498680129000https://acdl.mit.edu/csi/user/rebeccae.morrisonrebeccae.morrisonrebeccae.morrison@gmail.comcleaning SING files 2017-06-28 16:02:09 -0400094afa23dc637c4539c0d291ebc460b6276f65fdcleaning SING fileseditTransportMaps/Algorithms/SparsityIdentification/NodeOrdering.pyeditTransportMaps/Algorithms/SparsityIdentification/SparsityIdentificationNonGaussian.pyeditTransportMaps/Algorithms/SparsityIdentification/GeneralizedPrecision.pyExamples/research/sparsity/post_processing/successProbPlot.pyExamples/research/sparsity/monte_carlo_studies/success-prob-stochvol.pyExamples/research/sparsity/post_processing/deltaPlot.pyExamples/research/sparsity/algorithm/get_gp_stochvol.pyExamples/research/sparsity/tests/l1-regpath.pyExamples/research/sparsity/algorithm/run_sing_stochvol.pyExamples/research/sparsity/tests/test-l1vsnreg.pyExamples/research/sparsity/tests/l1-params-vs-lambda.pyExamples/research/sparsity/algorithm/test_sing.pyb07e4c7631151dc9eff0b8551bd7aaa33b54dc641498680846000https://acdl.mit.edu/csi/user/rebeccae.morrisonrebeccae.morrisonrebeccae.morrison@gmail.coml1 tests and plotting scripts 2017-06-28 16:14:06 -0400b07e4c7631151dc9eff0b8551bd7aaa33b54dc64l1 tests and plotting scriptsaddExamples/research/sparsity/algorithm/get_gp_stochvol.pyaddExamples/research/sparsity/tests/test-l1vsnreg.pyaddExamples/research/sparsity/post_processing/successProbPlot.pyaddExamples/research/sparsity/tests/l1-params-vs-lambda.pyaddExamples/research/sparsity/tests/l1-regpath.pyaddExamples/research/sparsity/monte_carlo_studies/success-prob-stochvol.pyaddExamples/research/sparsity/post_processing/deltaPlot.pyeditExamples/research/sparsity/algorithm/run_sing_stochvol.pyaddExamples/research/sparsity/algorithm/test_sing.pyExamples/research/Helmholtz/Solver.pyExamples/research/Helmholtz/NeumannHelmholtz.py5908b4bc1071606629590a876f3fb0c11f36df4c1501258838000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on Helmholtz example from Ghattas' paper 2017-07-28 18:20:38 +02005908b4bc1071606629590a876f3fb0c11f36df4cworking on Helmholtz example from Ghattas' paperaddExamples/research/Helmholtz/NeumannHelmholtz.pyeditExamples/research/Helmholtz/Solver.pyExamples/research/Helmholtz/NeumannHelmholtz.pyd15a48175a3e54c2bedb89bcd578625ee49f24ed1501337662000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on Helmholtz 2017-07-29 16:14:22 +0200d15a48175a3e54c2bedb89bcd578625ee49f24edworking on HelmholtzeditExamples/research/Helmholtz/NeumannHelmholtz.pyExamples/research/Helmholtz/HelmholtzModelDistributions.pyExamples/research/Helmholtz/NeumannHelmholtz.py8b42e465aeb445dcfa742e09c2d45ea82e552bc81501351625000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itstarting to work on actual probabilistic model 2017-07-29 20:07:05 +02008b42e465aeb445dcfa742e09c2d45ea82e552bc8starting to work on actual probabilistic modeladdExamples/research/Helmholtz/HelmholtzModelDistributions.pyeditExamples/research/Helmholtz/NeumannHelmholtz.pyExamples/research/sparsity/algorithm/run_stoch_vol.pyExamples/research/sparsity/algorithm/run_SING_satellite.pyExamples/research/sparsity/algorithm/run_SING.pyExamples/research/sparsity/algorithm/run_sing_satellite.pyExamples/research/sparsity/algorithm/run_sing.pyf5315475aa6d8f3bd40d3a4cbb7b3cf7e4a6d9081502374873000https://acdl.mit.edu/csi/user/rebeccae.morrisonrebeccae.morrisonrebeccae.morrison@gmail.comrenaming some sun_sing files 2017-08-10 10:21:13 -0400f5315475aa6d8f3bd40d3a4cbb7b3cf7e4a6d908renaming some sun_sing filesaddExamples/research/sparsity/algorithm/run_sing_satellite.pydeleteExamples/research/sparsity/algorithm/run_SING.pydeleteExamples/research/sparsity/algorithm/run_stoch_vol.pydeleteExamples/research/sparsity/algorithm/run_SING_satellite.pyaddExamples/research/sparsity/algorithm/run_sing.pyExamples/research/sparsity/algorithm/run_sing.pyaf5fff1d294b4dbba26252126b0ee2166460528f1502375933000https://acdl.mit.edu/csi/user/rebeccae.morrisonrebeccae.morrisonrebeccae.morrison@gmail.comupdating run_sing files to run with SI.SING 2017-08-10 10:38:53 -0400af5fff1d294b4dbba26252126b0ee2166460528fupdating run_sing files to run with SI.SINGdeleteExamples/research/sparsity/algorithm/run_sing.pyExamples/research/sparsity/algorithm/run_sing_stochvol.pyExamples/research/sparsity/algorithm/run_sing_satellite.pyExamples/research/sparsity/algorithm/test_sing.pye44c5cb1442952afa8803e09ed7dde9790e83c821502375948000https://acdl.mit.edu/csi/user/rebeccae.morrisonrebeccae.morrisonrebeccae.morrison@gmail.comactually updating to run with SI.SING (ignore last commit) 2017-08-10 10:39:08 -0400e44c5cb1442952afa8803e09ed7dde9790e83c82actually updating to run with SI.SING (ignore last commit)editExamples/research/sparsity/algorithm/test_sing.pyeditExamples/research/sparsity/algorithm/run_sing_stochvol.pyeditExamples/research/sparsity/algorithm/run_sing_satellite.pyExamples/research/sparsity/tests/test_algorithm.pyExamples/research/sparsity/tests/l1-regpath.pyExamples/research/sparsity/tests/test_sing.pyExamples/research/sparsity/tests/test-l1vsnreg.pyExamples/research/sparsity/algorithm/test_sing.pyTransportMaps/Algorithms/SparsityIdentification/SparsityIdentificationNonGaussian.py00b191d4c73a3b060c41dd068aab80f7f48b07f41502481292000https://acdl.mit.edu/csi/user/rebeccae.morrisonrebeccae.morrisonrebeccae.morrison@gmail.comtesting l1 2017-08-11 15:54:52 -040000b191d4c73a3b060c41dd068aab80f7f48b07f4testing l1editExamples/research/sparsity/tests/test-l1vsnreg.pydeleteExamples/research/sparsity/algorithm/test_sing.pyaddExamples/research/sparsity/tests/test_sing.pydeleteExamples/research/sparsity/tests/test_algorithm.pyeditTransportMaps/Algorithms/SparsityIdentification/SparsityIdentificationNonGaussian.pyeditExamples/research/sparsity/tests/l1-regpath.pyExamples/research/sparsity/tests/l1-regpath.pyTransportMaps/Maps/TransportMapBase.pyTransportMaps/Algorithms/SparsityIdentification/RegularizedMap.pyTransportMaps/Algorithms/SparsityIdentification/SparsityIdentificationNonGaussian.pye741b37e9069dd93d55fa7f97abcd9320fd2b13e1502919598000https://acdl.mit.edu/csi/user/rebeccae.morrisonrebeccae.morrisonrebeccae.morrison@gmail.coml1 regularization 2017-08-16 17:39:58 -0400e741b37e9069dd93d55fa7f97abcd9320fd2b13el1 regularizationeditExamples/research/sparsity/tests/l1-regpath.pyaddTransportMaps/Algorithms/SparsityIdentification/RegularizedMap.pyeditTransportMaps/Algorithms/SparsityIdentification/SparsityIdentificationNonGaussian.pyeditTransportMaps/Maps/TransportMapBase.pyTransportMaps/Algorithms/SparsityIdentification/NodeOrdering.pyTransportMaps/Algorithms/SparsityIdentification/RegularizedMap.pyTransportMaps/Algorithms/SparsityIdentification/SparsityIdentificationNonGaussian.pyTransportMaps/Algorithms/SparsityIdentification/GeneralizedPrecision.py62050014501748e66e695a324b258b99ead7cf4b1505488908000https://acdl.mit.edu/csi/user/rsbrsbrsb@mit.eduUpdated regularized map - SING now runs with 2 types of reg and no reg. 2017-09-15 11:21:48 -040062050014501748e66e695a324b258b99ead7cf4bUpdated regularized map - SING now runs with 2 types of reg and no reg.editTransportMaps/Algorithms/SparsityIdentification/SparsityIdentificationNonGaussian.pyeditTransportMaps/Algorithms/SparsityIdentification/GeneralizedPrecision.pyeditTransportMaps/Algorithms/SparsityIdentification/NodeOrdering.pyeditTransportMaps/Algorithms/SparsityIdentification/RegularizedMap.pyTransportMaps/Distributions/FrozenDistributions.pyExamples/research/sparsity/tests/test_sing.pyTransportMaps/Algorithms/SparsityIdentification/SparsityIdentificationNonGaussian.pyc5b6a53f0962b2a34a9e9ed086ced358d4063a031505844587000https://acdl.mit.edu/csi/user/rebeccae.morrisonrebeccae.morrisonrebeccae.morrison@gmail.comrelaxed rademacher, butterfly distribution, and more properties of gaussian graphs 2017-09-19 14:09:47 -0400c5b6a53f0962b2a34a9e9ed086ced358d4063a03relaxed rademacher, butterfly distribution, and more properties ofeditTransportMaps/Algorithms/SparsityIdentification/SparsityIdentificationNonGaussian.pyeditTransportMaps/Distributions/FrozenDistributions.pyeditExamples/research/sparsity/tests/test_sing.pyTransportMaps/Distributions/FrozenDistributions.py1d3d5286a3a3c944c4e9875e0a63ebfc6740530a1505846071000https://acdl.mit.edu/csi/user/rebeccae.morrisonrebeccae.morrisonrebeccae.morrison@gmail.comrelaxed rademacher uses uniform over (-1,1), not (0,1) 2017-09-19 14:34:31 -04001d3d5286a3a3c944c4e9875e0a63ebfc6740530arelaxed rademacher uses uniform over (-1,1), not (0,1)editTransportMaps/Distributions/FrozenDistributions.pyTransportMaps/Algorithms/SparsityIdentification/NodeOrdering.py381fbe9e05e257b76075344b72cdcf42e07e7fc01507056551000https://acdl.mit.edu/csi/user/rebeccae.morrisonrebeccae.morrisonrebeccae.morrison@gmail.comnode ordering fix 2017-10-03 14:49:11 -0400381fbe9e05e257b76075344b72cdcf42e07e7fc0node ordering fixeditTransportMaps/Algorithms/SparsityIdentification/NodeOrdering.pyExamples/research/Helmholtz/NeumannHelmholtz.py4007ad6708da92e57cab567a2656520637f9ba081508860611000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itchanging parameters in Helmholtz 2017-10-24 11:56:51 -04004007ad6708da92e57cab567a2656520637f9ba08changing parameters in HelmholtzeditExamples/research/Helmholtz/NeumannHelmholtz.pyExamples/research/EIT/solver.py9ec7cfd1065a7494c3ae22fa8849392426bf4bf01508877535000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itadded stub solver for EIT problem 2017-10-24 16:38:55 -04009ec7cfd1065a7494c3ae22fa8849392426bf4bf0added stub solver for EIT problemaddExamples/research/EIT/solver.pyExamples/research/EIT/solver.pye0796ce2ef9118f2a13a5de806c63c945d0f7b311508882002000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on surface gradient 2017-10-24 17:53:22 -0400e0796ce2ef9118f2a13a5de806c63c945d0f7b31working on surface gradienteditExamples/research/EIT/solver.pyExamples/research/EIT/solverCEM.pyExamples/research/EIT/solver.py6cbeb106a0b4fa824ea84fb50f3ace4fc1afb26c1509134227000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on CEM 2017-10-27 15:57:07 -04006cbeb106a0b4fa824ea84fb50f3ace4fc1afb26cworking on CEMaddExamples/research/EIT/solverCEM.pydeleteExamples/research/EIT/solver.pyExamples/research/EIT/solverCEM.py554cfb6e3b40351560e9b3cbaddb7c8712099a461509147184000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itfixed EIT working on CEM 2017-10-27 19:33:04 -0400554cfb6e3b40351560e9b3cbaddb7c8712099a46fixed EIT working on CEMeditExamples/research/EIT/solverCEM.pyExamples/research/sparsity/post_processing/color-matrix-modrad.pyTransportMaps/Algorithms/SparsityIdentification/SparsityIdentificationNonGaussian.pyExamples/research/sparsity/algorithm/run_sing_stochvol.pyExamples/research/sparsity/post_processing/pp_sparsity-cse.pyExamples/research/sparsity/algorithm/run_sing_satellite.pyExamples/research/sparsity/post_processing/color-matrix-satellite.pyExamples/research/sparsity/post_processing/color-matrix.py8906ca8c04e592f28fc65c27c9802e3d0414ba3b1510843942000https://acdl.mit.edu/csi/user/rebeccae.morrisonrebeccae.morrisonrebeccae.morrison@gmail.complotting scripts for nips 2017-11-16 09:52:22 -05008906ca8c04e592f28fc65c27c9802e3d0414ba3bplotting scripts for nipseditExamples/research/sparsity/post_processing/color-matrix-modrad.pyeditExamples/research/sparsity/post_processing/color-matrix-satellite.pyeditExamples/research/sparsity/algorithm/run_sing_stochvol.pyeditExamples/research/sparsity/algorithm/run_sing_satellite.pyeditTransportMaps/Algorithms/SparsityIdentification/SparsityIdentificationNonGaussian.pyeditExamples/research/sparsity/post_processing/color-matrix.pyeditExamples/research/sparsity/post_processing/pp_sparsity-cse.pyTransportMaps/Algorithms/SparsityIdentification/SparsityIdentificationNonGaussian.pyfb25f3aac184b0c2c055170e6aac5293aecf27001510848845000https://acdl.mit.edu/csi/user/rebeccae.morrisonrebeccae.morrisonrebeccae.morrison@gmail.comturned hessian off in sing 2017-11-16 11:14:05 -0500fb25f3aac184b0c2c055170e6aac5293aecf2700turned hessian off in singeditTransportMaps/Algorithms/SparsityIdentification/SparsityIdentificationNonGaussian.pyExamples/research/sparsity/monte_carlo_studies/MC_1StepAlgs/SparsityIdentificationNonGaussian.pyExamples/research/sparsity/monte_carlo_studies/MC_1StepAlgs/graph_test.py5a611cb9d2d7d09ca619a613d1bcaf50d41002cc1510849372000https://acdl.mit.edu/csi/user/rsbrsbrsb@mit.edumc studies 1step algs 2017-11-16 11:22:52 -05005a611cb9d2d7d09ca619a613d1bcaf50d41002ccmc studies 1step algsaddExamples/research/sparsity/monte_carlo_studies/MC_1StepAlgs/SparsityIdentificationNonGaussian.pyaddExamples/research/sparsity/monte_carlo_studies/MC_1StepAlgs/graph_test.pyExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/mc_gaussian.pyExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/mc_star9dim.pyExamples/research/sparsity/monte_carlo_studies/SING_Convergence/plotting.pyExamples/research/sparsity/monte_carlo_studies/MC_RecoveryTransition/NonGaussianGraphs.pyExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/NonGaussianGraphs.pyExamples/research/sparsity/monte_carlo_studies/MC_RecoveryTransition/mc_grid9dim.pyExamples/research/sparsity/monte_carlo_studies/SING_Convergence/GaussianGraphs.pyExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/mc_grid9dim_ord1.pyExamples/research/sparsity/monte_carlo_studies/SING_Convergence/SparsityIdentificationNonGaussian.pyExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/mc_chain6dim.pyExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/mc_stocvolhyper9dim.pyExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/python_runs.shExamples/research/sparsity/monte_carlo_studies/MC_RecoveryTransition/GaussianGraphs.pyExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/mc_chain9dim.pyExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/mc_regularization.pyExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/mc_stocvolchain9dim.pyExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/mc_stocvolhyper6dim.pyExamples/research/sparsity/monte_carlo_studies/SING_Convergence/NonGaussianGraphs.pyExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/GaussianGraphs.pyExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/mc_grid9dim.pyExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/mc_stocvolchain6dim.pyExamples/research/sparsity/monte_carlo_studies/MC_RecoveryTransition/mc_stocvolhyper6dim.pyExamples/research/sparsity/monte_carlo_studies/MC_RecoveryTransition/mc_replot.pyExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/mc_rademacher6dim.pyExamples/research/sparsity/monte_carlo_studies/MC_RecoveryTransition/python_runs.shExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/mc_star6dim.pyExamples/research/sparsity/monte_carlo_studies/SING_Convergence/graph_test.py626030ca3a6917fc19fa219a8a888a1b73165f971510850238000https://acdl.mit.edu/csi/user/rsbrsbrsb@mit.eduMore MC Studies for SING 2017-11-16 11:37:18 -0500626030ca3a6917fc19fa219a8a888a1b73165f97More MC Studies for SINGaddExamples/research/sparsity/monte_carlo_studies/SING_Convergence/SparsityIdentificationNonGaussian.pyaddExamples/research/sparsity/monte_carlo_studies/SING_Convergence/plotting.pyaddExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/NonGaussianGraphs.pyaddExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/GaussianGraphs.pyaddExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/mc_stocvolchain6dim.pyaddExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/mc_stocvolhyper9dim.pyaddExamples/research/sparsity/monte_carlo_studies/MC_RecoveryTransition/NonGaussianGraphs.pyaddExamples/research/sparsity/monte_carlo_studies/MC_RecoveryTransition/mc_stocvolhyper6dim.pyaddExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/python_runs.shaddExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/mc_chain9dim.pyaddExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/mc_grid9dim_ord1.pyaddExamples/research/sparsity/monte_carlo_studies/MC_RecoveryTransition/mc_replot.pyaddExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/mc_stocvolchain9dim.pyaddExamples/research/sparsity/monte_carlo_studies/SING_Convergence/NonGaussianGraphs.pyaddExamples/research/sparsity/monte_carlo_studies/MC_RecoveryTransition/mc_grid9dim.pyaddExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/mc_gaussian.pyaddExamples/research/sparsity/monte_carlo_studies/SING_Convergence/graph_test.pyaddExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/mc_rademacher6dim.pyaddExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/mc_regularization.pyaddExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/mc_stocvolhyper6dim.pyaddExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/mc_star9dim.pyaddExamples/research/sparsity/monte_carlo_studies/MC_RecoveryTransition/GaussianGraphs.pyaddExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/mc_chain6dim.pyaddExamples/research/sparsity/monte_carlo_studies/SING_Convergence/GaussianGraphs.pyaddExamples/research/sparsity/monte_carlo_studies/MC_RecoveryTransition/python_runs.shaddExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/mc_star6dim.pyaddExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/mc_grid9dim.pyExamples/research/EIT/solverNoElectrode.pyExamples/research/EIT/solverEIT.pyExamples/research/EIT/solverCEM.py54779f6bf25b5dbdd09acdb8600a280419520ceb1511093049000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on models 2017-11-19 07:04:09 -050054779f6bf25b5dbdd09acdb8600a280419520cebworking on modelsaddExamples/research/EIT/solverEIT.pyaddExamples/research/EIT/solverNoElectrode.pyeditExamples/research/EIT/solverCEM.pyExamples/research/EIT/solverNoElectrode.pyc99a0ba549b58e0b3e1a71100f5ec10a290195401511131482000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itNo electrodes model works 2017-11-19 17:44:42 -0500c99a0ba549b58e0b3e1a71100f5ec10a29019540No electrodes model workseditExamples/research/EIT/solverNoElectrode.pyExamples/research/EIT/solverNoElectrode.py3030f9ab6da8b7238bbd0e07124deaad6d8bcac21511136507000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on discretized model 2017-11-19 19:08:27 -05003030f9ab6da8b7238bbd0e07124deaad6d8bcac2working on discretized modeleditExamples/research/EIT/solverNoElectrode.pyExamples/research/EIT/solverDiscretized.py6986721bccfa8fd0bd94ce800c70441e10e6a1c21511136607000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on discretized model 2017-11-19 19:10:07 -05006986721bccfa8fd0bd94ce800c70441e10e6a1c2working on discretized modeladdExamples/research/EIT/solverDiscretized.pyExamples/research/EIT/solverNoElectrode.pyExamples/research/EIT/solverDiscretized.pyExamples/research/EIT/GmshGeoGenerator.py620e39997e6dafe4524b9c88e2deb0fb9d8cb27c1511221879000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itgmsh mesh generation for discretized test 2017-11-20 18:51:19 -0500620e39997e6dafe4524b9c88e2deb0fb9d8cb27cgmsh mesh generation for discretized testeditExamples/research/EIT/solverDiscretized.pyeditExamples/research/EIT/solverNoElectrode.pyaddExamples/research/EIT/GmshGeoGenerator.pyExamples/research/EIT/GmshGeoGenerator.pyExamples/research/EIT/solverDiscretized.pyb0dc2ae9dfd2716343f1695cd12c800c4c3a2a3f1511536028000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on complete model 2017-11-24 10:07:08 -0500b0dc2ae9dfd2716343f1695cd12c800c4c3a2a3fworking on complete modeleditExamples/research/EIT/GmshGeoGenerator.pyeditExamples/research/EIT/solverDiscretized.pyExamples/research/EIT/NoElectrode/solver.pyExamples/research/EIT/solverNoElectrode.pyExamples/research/EIT/Discretized/GmshGeoGenerator.pyExamples/research/EIT/solverDiscretized.pyExamples/research/EIT/GmshGeoGenerator.pyExamples/research/EIT/NoElectrode/GmshGeoGenerator.pyExamples/research/EIT/NoElectrode/KuoShengCheng-test.pyExamples/research/EIT/Discretized/solverDiscretized.py1f0f15d81e7b5c98dcfab7219cb78030e4e5399f1511909849000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itstarting to work on adjoint equations 2017-11-28 17:57:29 -05001f0f15d81e7b5c98dcfab7219cb78030e4e5399fstarting to work on adjoint equationsaddExamples/research/EIT/NoElectrode/GmshGeoGenerator.pydeleteExamples/research/EIT/solverNoElectrode.pyaddExamples/research/EIT/NoElectrode/solver.pydeleteExamples/research/EIT/solverDiscretized.pyaddExamples/research/EIT/NoElectrode/KuoShengCheng-test.pyaddExamples/research/EIT/Discretized/solverDiscretized.pyaddExamples/research/EIT/Discretized/GmshGeoGenerator.pydeleteExamples/research/EIT/GmshGeoGenerator.pyExamples/research/EIT/NoElectrode/solver.pyExamples/research/EIT/NoElectrode/KuoShengCheng-test.py256eda672a22db333e701419f6efc8c7a7c910ef1511913220000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itmessed up with no-electrodes model.. 2017-11-28 18:53:40 -0500256eda672a22db333e701419f6efc8c7a7c910efmessed up with no-electrodes model..editExamples/research/EIT/NoElectrode/solver.pyeditExamples/research/EIT/NoElectrode/KuoShengCheng-test.pyExamples/research/EIT/NoElectrode/PointWiseMeasurement-test.pyExamples/research/EIT/NoElectrode/KuoShengCheng-test.pye4538c57ecc86a99fdbec9adefb612fe3ade97181511931752000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on fast sensor function 2017-11-29 00:02:32 -0500e4538c57ecc86a99fdbec9adefb612fe3ade9718working on fast sensor functioneditExamples/research/EIT/NoElectrode/KuoShengCheng-test.pyaddExamples/research/EIT/NoElectrode/PointWiseMeasurement-test.pyExamples/research/EIT/NoElectrode/PointWiseMeasurement-test.pyExamples/research/EIT/NoElectrode/solver.py06d484113c54fa2b073f49c77ff1cc29759ffbca1511987117000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itfixed sensor expression 2017-11-29 15:25:17 -050006d484113c54fa2b073f49c77ff1cc29759ffbcafixed sensor expressioneditExamples/research/EIT/NoElectrode/solver.pyeditExamples/research/EIT/NoElectrode/PointWiseMeasurement-test.pyExamples/research/EIT/DirichletToNeumann/main.pyExamples/research/EIT/NoElectrode/PointWiseMeasurement-test.pyExamples/research/EIT/NoElectrode/solver.pyExamples/research/EIT/DirichletToNeumann/GmshGeoGenerator.pyExamples/research/EIT/NoElectrode/GmshGeoGenerator.pyExamples/research/EIT/NoElectrode/Adjoint-test.py220f170315beb77bae7e6ab417a6071bce20fe641512252540000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on Dirichlet to Neumann model 2017-12-02 17:09:00 -0500220f170315beb77bae7e6ab417a6071bce20fe64working on Dirichlet to Neumann modeladdExamples/research/EIT/NoElectrode/Adjoint-test.pyeditExamples/research/EIT/NoElectrode/GmshGeoGenerator.pyaddExamples/research/EIT/DirichletToNeumann/main.pyeditExamples/research/EIT/NoElectrode/solver.pyeditExamples/research/EIT/NoElectrode/PointWiseMeasurement-test.pyaddExamples/research/EIT/DirichletToNeumann/GmshGeoGenerator.pyExamples/research/EIT/DirichletToNeumann/main.pyExamples/research/EIT/DirichletToNeumann/GmshGeoGenerator.pyExamples/research/EIT/CEM/main.pyExamples/research/EIT/NoElectrode/DirBC-Adjoint-test.pyExamples/research/EIT/NoElectrode/Adjoint-test.pyExamples/research/EIT/solverCEM.py44dd7c01b4a40337f8babfa19c2d6d4b689fa2091513009854000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on adjoint for no electrode model 2017-12-11 11:30:54 -050044dd7c01b4a40337f8babfa19c2d6d4b689fa209working on adjoint for no electrode modeleditExamples/research/EIT/DirichletToNeumann/main.pyeditExamples/research/EIT/NoElectrode/Adjoint-test.pyaddExamples/research/EIT/NoElectrode/DirBC-Adjoint-test.pyeditExamples/research/EIT/DirichletToNeumann/GmshGeoGenerator.pyaddExamples/research/EIT/CEM/main.pydeleteExamples/research/EIT/solverCEM.pyExamples/research/Helmholtz/test_adjoint.pyExamples/research/Helmholtz/test_solve.pyExamples/research/Helmholtz/HelmholtzModelDistributions.pyd52d822c00cdfd1bb070242a2f88203d1fbae1951513035936000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itadjoint done 2017-12-11 18:45:36 -0500d52d822c00cdfd1bb070242a2f88203d1fbae195adjoint doneaddExamples/research/Helmholtz/test_adjoint.pyeditExamples/research/Helmholtz/HelmholtzModelDistributions.pyaddExamples/research/Helmholtz/test_solve.pyExamples/research/Helmholtz/test_solve.pyExamples/research/Helmholtz/test_adjoint.pyExamples/research/Helmholtz/HelmholtzModelDistributions.pyc6ddef105d4b878be5b023e44c4e95b70e49a2281513054069000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itgradient and Hessian working 2017-12-11 23:47:49 -0500c6ddef105d4b878be5b023e44c4e95b70e49a228gradient and Hessian workingeditExamples/research/Helmholtz/HelmholtzModelDistributions.pyeditExamples/research/Helmholtz/test_solve.pyeditExamples/research/Helmholtz/test_adjoint.pyExamples/research/Helmholtz/HelmholtzModelDistributions.pyExamples/research/Helmholtz/DataGeneration.py1636cfed392003f2565fecb99501ec919f2d4aa61513120932000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itsetting up the posterior distribution 2017-12-12 18:22:12 -05001636cfed392003f2565fecb99501ec919f2d4aa6setting up the posterior distributioneditExamples/research/Helmholtz/HelmholtzModelDistributions.pyaddExamples/research/Helmholtz/DataGeneration.pyExamples/research/Helmholtz/DataGeneration.pyExamples/research/Helmholtz/HelmholtzModelDistributions.py226b12a7642fb90e9a367e33b51e8055891f28971513180006000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on likelihood functions 2017-12-13 10:46:46 -0500226b12a7642fb90e9a367e33b51e8055891f2897working on likelihood functionseditExamples/research/Helmholtz/DataGeneration.pyeditExamples/research/Helmholtz/HelmholtzModelDistributions.pyExamples/research/Helmholtz/HelmholtzModelDistributions.pyExamples/research/Helmholtz/DataGeneration.py72095f663f581421b6390c49a4ab735a2ba928041513219809000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on posterior distribution 2017-12-13 21:50:09 -050072095f663f581421b6390c49a4ab735a2ba92804working on posterior distributioneditExamples/research/Helmholtz/HelmholtzModelDistributions.pyeditExamples/research/Helmholtz/DataGeneration.pyExamples/research/Helmholtz/HelmholtzModelDistributions.pyExamples/research/Helmholtz/DataGeneration.pyffe610d8b5eb9a6a46fdb9ab1a274f0c75e2a43e1513225416000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itstorage/loading of distribution works 2017-12-13 23:23:36 -0500ffe610d8b5eb9a6a46fdb9ab1a274f0c75e2a43estorage/loading of distribution workseditExamples/research/Helmholtz/HelmholtzModelDistributions.pyeditExamples/research/Helmholtz/DataGeneration.pyTransportMaps/Distributions/TransportMapDistributions.pyTransportMaps/Distributions/DistributionBase.pyTransportMaps/Distributions/FrozenDistributions.pyTransportMaps/Maps/FrozenTriangularTransportMaps.pyTransportMaps/Maps/TransportMapBase.pyTransportMaps/Routines.pyTransportMaps/Distributions/Inference/InferenceBase.pyTransportMaps/Likelihoods/LikelihoodBase.pyTransportMaps/Maps/MapBase.py59ff46c09c25911084c5a70ab222dd5d4c2499dd1513289910000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on action of Hessian 2017-12-14 17:18:30 -050059ff46c09c25911084c5a70ab222dd5d4c2499ddworking on action of HessianeditTransportMaps/Likelihoods/LikelihoodBase.pyeditTransportMaps/Distributions/DistributionBase.pyeditTransportMaps/Maps/TransportMapBase.pyeditTransportMaps/Distributions/Inference/InferenceBase.pyeditTransportMaps/Maps/MapBase.pyeditTransportMaps/Distributions/FrozenDistributions.pyeditTransportMaps/Routines.pyeditTransportMaps/Maps/FrozenTriangularTransportMaps.pyeditTransportMaps/Distributions/TransportMapDistributions.pyTransportMaps/tests/TestFunctions.pyTransportMaps/Distributions/TransportMapDistributions.pyTransportMaps/Distributions/FrozenDistributions.pyExamples/research/Helmholtz/DataGeneration.pyTransportMaps/Maps/FrozenTriangularTransportMaps.pyTransportMaps/tests/test_transportmap_distributions.pyExamples/research/Helmholtz/HelmholtzModelDistributions.pyTransportMaps/Functionals/ParametricFunctionApproximationBase.pyTransportMaps/Maps/TransportMapBase.pyTransportMaps/Maps/TriangularTransportMapBase.pyExamples/research/Helmholtz/requirements.txtTransportMaps/Likelihoods/LikelihoodBase.pye0341aa2ea123d8a514f7ec56a75c57dce2cda741513310517000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on action_hess_a for transport map distributions 2017-12-14 23:01:57 -0500e0341aa2ea123d8a514f7ec56a75c57dce2cda74working on action_hess_a for transport map distributionseditTransportMaps/Distributions/TransportMapDistributions.pyeditTransportMaps/Maps/TransportMapBase.pyeditTransportMaps/Maps/TriangularTransportMapBase.pyeditTransportMaps/tests/TestFunctions.pyeditExamples/research/Helmholtz/DataGeneration.pyeditExamples/research/Helmholtz/HelmholtzModelDistributions.pyeditTransportMaps/Likelihoods/LikelihoodBase.pyeditTransportMaps/Maps/FrozenTriangularTransportMaps.pyaddExamples/research/Helmholtz/requirements.txteditTransportMaps/Distributions/FrozenDistributions.pyeditTransportMaps/Functionals/ParametricFunctionApproximationBase.pyeditTransportMaps/tests/test_transportmap_distributions.pyTransportMaps/tests/test_transportmaps.pyTransportMaps/Distributions/TransportMapDistributions.pyTransportMaps/Maps/FullTransportMaps.pyTransportMaps/Maps/TriangularTransportMaps.pyTransportMaps/Maps/FrozenTriangularTransportMaps.pyTransportMaps/tests/test_transportmap_distributions.pyTransportMaps/Maps/TransportMapBase.pyTransportMaps/Routines.pyTransportMaps/Maps/TriangularTransportMapBase.py8ecf1c5af42658f39a35111ab50f928993592a2d1513381005000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on minimization of kl divergence using action of the Hessian 2017-12-15 18:36:45 -05008ecf1c5af42658f39a35111ab50f928993592a2dworking on minimization of kl divergence using action of the HessianeditTransportMaps/Distributions/TransportMapDistributions.pyeditTransportMaps/tests/test_transportmap_distributions.pyeditTransportMaps/Maps/TransportMapBase.pyeditTransportMaps/Maps/TriangularTransportMaps.pyeditTransportMaps/Routines.pyeditTransportMaps/Maps/FullTransportMaps.pyeditTransportMaps/tests/test_transportmaps.pyeditTransportMaps/Maps/FrozenTriangularTransportMaps.pyeditTransportMaps/Maps/TriangularTransportMapBase.pyTransportMaps/tests/test_kl_divergence.pyTransportMaps/Routines.pyTransportMaps/tests/test_kl_minimization.pyaeabf83b427f2d2912ee138612a2cc3641033cf81513529262000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on kl minimization tests 2017-12-17 11:47:42 -0500aeabf83b427f2d2912ee138612a2cc3641033cf8working on kl minimization testseditTransportMaps/Routines.pyeditTransportMaps/tests/test_kl_divergence.pyeditTransportMaps/tests/test_kl_minimization.pyTransportMaps/tests/test_L2_misfit.pybc54e1211c86945459b44a2d6b16e631ddca66db1513627550000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itunit tests are passing. todo: caching in Likelihood to avoid extra function and gradient evaluations 2017-12-18 15:05:50 -0500bc54e1211c86945459b44a2d6b16e631ddca66dbunit tests are passing. todo: caching in Likelihood to avoid extraeditTransportMaps/tests/test_L2_misfit.pyTransportMaps/Distributions/TransportMapDistributions.pyTransportMaps/Maps/TransportMapBase.pyTransportMaps/Maps/TriangularTransportMapBase.pyTransportMaps/Maps/TriangularTransportMaps.pydabe8c79bf6be50a7054dfa2b78cd2f7077e0a2b1513641695000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itthe distribution object is now pre-broadcasted to the children in kl-minimization. Fixes #82 2017-12-18 19:01:35 -0500dabe8c79bf6be50a7054dfa2b78cd2f7077e0a2bthe distribution object is now pre-broadcasted to the children ineditTransportMaps/Maps/TriangularTransportMapBase.pyeditTransportMaps/Maps/TransportMapBase.pyeditTransportMaps/Maps/TriangularTransportMaps.pyeditTransportMaps/Distributions/TransportMapDistributions.pyTransportMaps/tests/test_kl_divergence.pyTransportMaps/Maps/MapBase.pye52459698d03a628bec5ebd648d71fa141ec28e01513734259000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itfixed test_kl_divergence 2017-12-19 20:44:19 -0500e52459698d03a628bec5ebd648d71fa141ec28e0fixed test_kl_divergenceeditTransportMaps/Maps/MapBase.pyeditTransportMaps/tests/test_kl_divergence.pyTransportMaps/Misc.pyTransportMaps/Maps/MapBase.py77ebfc2e378370310aae90cf4818e78159d31c9e1513743001000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on caching of Likelihood evaluations 2017-12-19 23:10:01 -050077ebfc2e378370310aae90cf4818e78159d31c9eworking on caching of Likelihood evaluationseditTransportMaps/Maps/MapBase.pyeditTransportMaps/Misc.pyTransportMaps/Maps/TriangularTransportMapBase.py9130101e1fb80460a68c2307b28b0d9318f2ce701513781317000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itfixed init function 2017-12-20 09:48:37 -05009130101e1fb80460a68c2307b28b0d9318f2ce70fixed init functioneditTransportMaps/Maps/TriangularTransportMapBase.pyTransportMaps/Misc.pye0d22f01803fb453d0b7a2e28ac51f93e4ed77e31513781589000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itThe action of the Hessian is ready. Fixes #31. Caching issues reserved to #83. 2017-12-20 09:53:09 -0500e0d22f01803fb453d0b7a2e28ac51f93e4ed77e3The action of the Hessian is ready. Fixes #31. Caching issues reservededitTransportMaps/Misc.pyTransportMaps/Functionals/AlgebraicLinearSpanApproximations.pyTransportMaps/Functionals/LinearSpanApproximationBase.pyTransportMaps/Functionals/ParametricFunctionApproximationBase.pyTransportMaps/tests/test_functions.pyTransportMaps/Maps/TransportMapBase.pyTransportMaps/Functionals/MonotonicFunctionApproximations.pyTransportMaps/Functionals/FunctionBase.pyTransportMaps/Misc.py4dca51b336ca704d613c64e8818db12b073a29b11513810023000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itintroducing cached and counted decorators 2017-12-20 17:47:03 -05004dca51b336ca704d613c64e8818db12b073a29b1introducing cached and counted decoratorseditTransportMaps/Maps/TransportMapBase.pyeditTransportMaps/Functionals/MonotonicFunctionApproximations.pyeditTransportMaps/Functionals/AlgebraicLinearSpanApproximations.pyeditTransportMaps/Misc.pyeditTransportMaps/Functionals/FunctionBase.pyeditTransportMaps/Functionals/ParametricFunctionApproximationBase.pyeditTransportMaps/Functionals/LinearSpanApproximationBase.pyeditTransportMaps/tests/test_functions.pyTransportMaps/Maps/TransportMapBase.pyTransportMaps/Functionals/FunctionBase.pyTransportMaps/Functionals/MonotonicFunctionApproximations.pyTransportMaps/Misc.pyTransportMaps/Maps/MapBase.py2e4189f3160cc47a04d72d7ea6a2457ae6bd68361513813150000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itadding counting output 2017-12-20 18:39:10 -05002e4189f3160cc47a04d72d7ea6a2457ae6bd6836adding counting outputeditTransportMaps/Maps/TransportMapBase.pyeditTransportMaps/Functionals/FunctionBase.pyeditTransportMaps/Maps/MapBase.pyeditTransportMaps/Misc.pyeditTransportMaps/Functionals/MonotonicFunctionApproximations.pyTransportMaps/Functionals/MonotonicFunctionApproximations.pyTransportMaps/Misc.pyTransportMaps/Maps/TriangularTransportMaps.pyfc49f4638a8e02766ebf19710969e4b8490ea37d1513871690000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itcaching to be finished in TransportMaps and Maps in general. Then I need to move to caching for distributions 2017-12-21 10:54:50 -0500fc49f4638a8e02766ebf19710969e4b8490ea37dcaching to be finished in TransportMaps and Maps in general. Then I neededitTransportMaps/Functionals/MonotonicFunctionApproximations.pyeditTransportMaps/Maps/TriangularTransportMaps.pyeditTransportMaps/Misc.pyTransportMaps/Maps/TransportMapBase.pyTransportMaps/Maps/Decomposable/SequentialInferenceMaps.pyTransportMaps/Maps/SimpleTransportMaps.py3436085cad92f36105c7c7dc10da3ca470626a161513904616000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itstill working on maps... 2017-12-21 20:03:36 -05003436085cad92f36105c7c7dc10da3ca470626a16still working on maps...editTransportMaps/Maps/Decomposable/SequentialInferenceMaps.pyeditTransportMaps/Maps/TransportMapBase.pyeditTransportMaps/Maps/SimpleTransportMaps.pyTransportMaps/Functionals/AlgebraicLinearSpanApproximations.pyTransportMaps/Distributions/ConditionalDistributions.pyTransportMaps/Distributions/DistributionBase.pyTransportMaps/Distributions/FrozenDistributions.pyTransportMaps/Maps/Decomposable/SequentialInferenceMaps.pyTransportMaps/Distributions/ParametricDistributionBase.pyTransportMaps/ObjectBase.pyTransportMaps/Maps/TransportMapBase.pyTransportMaps/Densities/Densities.pyTransportMaps/Maps/MapBase.pyTransportMaps/Algorithms/SequentialInference/SequentialInferenceBase.pyTransportMaps/Distributions/TransportMapDistributions.pyTransportMaps/Densities/Inference/InferenceBase.pyTransportMaps/Algorithms/__init__.pyTransportMaps/Densities/Decomposable/SequentialInferenceDensities.pyTransportMaps/Functionals/ParametricFunctionApproximationBase.pyTransportMaps/Functionals/MonotonicFunctionApproximations.pyTransportMaps/Misc.pyeecb5f784cadbad2a04c318b9fc6d80b7e138c2b1513968398000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on distributions 2017-12-22 13:46:38 -0500eecb5f784cadbad2a04c318b9fc6d80b7e138c2bworking on distributionseditTransportMaps/Algorithms/SequentialInference/SequentialInferenceBase.pyeditTransportMaps/Functionals/AlgebraicLinearSpanApproximations.pyeditTransportMaps/Distributions/ConditionalDistributions.pyeditTransportMaps/Densities/Densities.pyeditTransportMaps/Densities/Inference/InferenceBase.pyeditTransportMaps/Maps/MapBase.pyeditTransportMaps/Algorithms/__init__.pyeditTransportMaps/Distributions/DistributionBase.pyeditTransportMaps/Distributions/ParametricDistributionBase.pyeditTransportMaps/Misc.pyeditTransportMaps/Functionals/ParametricFunctionApproximationBase.pyeditTransportMaps/ObjectBase.pyeditTransportMaps/Distributions/TransportMapDistributions.pyeditTransportMaps/Functionals/MonotonicFunctionApproximations.pyeditTransportMaps/Maps/Decomposable/SequentialInferenceMaps.pyeditTransportMaps/Densities/Decomposable/SequentialInferenceDensities.pyeditTransportMaps/Maps/TransportMapBase.pyeditTransportMaps/Distributions/FrozenDistributions.pyTransportMaps/Functionals/AlgebraicLinearSpanApproximations.pyTransportMaps/Distributions/ConditionalDistributions.pyTransportMaps/Distributions/TransportMapDistributions.pyTransportMaps/Distributions/DistributionBase.pyTransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.pyTransportMaps/Functionals/ParametricFunctionApproximationBase.pyTransportMaps/Functionals/MonotonicFunctionApproximations.pyTransportMaps/Maps/TransportMapBase.pyTransportMaps/Misc.pyTransportMaps/Distributions/Inference/InferenceBase.pyTransportMaps/Distributions/Examples/StochasticVolatility/StocVolHyperDistributions.pyTransportMaps/Likelihoods/LikelihoodBase.pye50e966b74257dc534cd9bf6a71d0456cfa4d0851513989187000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.ittesting caching. todo: caching in optimization problems 2017-12-22 19:33:07 -0500e50e966b74257dc534cd9bf6a71d0456cfa4d085testing caching. todo: caching in optimization problemseditTransportMaps/Distributions/TransportMapDistributions.pyeditTransportMaps/Functionals/AlgebraicLinearSpanApproximations.pyeditTransportMaps/Likelihoods/LikelihoodBase.pyeditTransportMaps/Functionals/MonotonicFunctionApproximations.pyeditTransportMaps/Distributions/Inference/InferenceBase.pyeditTransportMaps/Maps/TransportMapBase.pyeditTransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.pyeditTransportMaps/Distributions/ConditionalDistributions.pyeditTransportMaps/Distributions/DistributionBase.pyeditTransportMaps/Misc.pyeditTransportMaps/Distributions/Examples/StochasticVolatility/StocVolHyperDistributions.pyeditTransportMaps/Functionals/ParametricFunctionApproximationBase.pyTransportMaps/Functionals/AlgebraicLinearSpanApproximations.pyTransportMaps/Distributions/ConditionalDistributions.pyTransportMaps/Functionals/LinearSpanApproximationBase.pyTransportMaps/Distributions/DistributionBase.pyTransportMaps/Distributions/FrozenDistributions.pyTransportMaps/Maps/Decomposable/SequentialInferenceMaps.pyTransportMaps/Distributions/ParametricDistributionBase.pyTransportMaps/Maps/TransportMapBase.pyTransportMaps/Maps/TriangularTransportMapBase.pyTransportMaps/Likelihoods/LikelihoodBase.pyTransportMaps/Distributions/TransportMapDistributions.pyTransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.pyTransportMaps/Functionals/MonotonicFunctionApproximations.pyTransportMaps/Misc.pyTransportMaps/Distributions/Examples/StochasticVolatility/StocVolHyperDistributions.pyTransportMaps/Distributions/Inference/InferenceBase.py5983786da831554b5dd63da88dc2a05636c356501514006994000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itadded caching and counting wherever needed (maybe missing some spots). To be extensively tested... 2017-12-23 00:29:54 -05005983786da831554b5dd63da88dc2a05636c35650added caching and counting wherever needed (maybe missing some spots).editTransportMaps/Distributions/TransportMapDistributions.pyeditTransportMaps/Functionals/MonotonicFunctionApproximations.pyeditTransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.pyeditTransportMaps/Distributions/Examples/StochasticVolatility/StocVolHyperDistributions.pyeditTransportMaps/Likelihoods/LikelihoodBase.pyeditTransportMaps/Misc.pyeditTransportMaps/Maps/Decomposable/SequentialInferenceMaps.pyeditTransportMaps/Distributions/ConditionalDistributions.pyeditTransportMaps/Distributions/DistributionBase.pyeditTransportMaps/Functionals/AlgebraicLinearSpanApproximations.pyeditTransportMaps/Maps/TransportMapBase.pyeditTransportMaps/Distributions/FrozenDistributions.pyeditTransportMaps/Functionals/LinearSpanApproximationBase.pyeditTransportMaps/Distributions/ParametricDistributionBase.pyeditTransportMaps/Distributions/Inference/InferenceBase.pyeditTransportMaps/Maps/TriangularTransportMapBase.pyTransportMaps/tests/test_transportmaps.pyTransportMaps/tests/TestFunctions.pyTransportMaps/Maps/FullTransportMaps.pyTransportMaps/Algorithms/SequentialInference/NonLinearSequentialInference.pyTransportMaps/Distributions/FrozenDistributions.pyTransportMaps/Maps/FrozenTriangularTransportMaps.pyTransportMaps/Maps/__init__.pyTransportMaps/Maps/TransportMapBase.pyTransportMaps/Maps/TriangularTransportMapBase.pyTransportMaps/Maps/MapBase.py6373d35ee627c07a69d142dd88d6fcdf842d2dd51514413206000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on caching in Hessian. Todo: update and run unittests 2017-12-27 17:20:06 -05006373d35ee627c07a69d142dd88d6fcdf842d2dd5working on caching in Hessian. Todo: update and run unittestseditTransportMaps/Maps/MapBase.pyeditTransportMaps/Maps/TransportMapBase.pyeditTransportMaps/Distributions/FrozenDistributions.pyeditTransportMaps/Algorithms/SequentialInference/NonLinearSequentialInference.pyeditTransportMaps/Maps/FrozenTriangularTransportMaps.pyeditTransportMaps/Maps/FullTransportMaps.pyeditTransportMaps/Maps/TriangularTransportMapBase.pyeditTransportMaps/tests/TestFunctions.pyeditTransportMaps/tests/test_transportmaps.pyeditTransportMaps/Maps/__init__.pyTransportMaps/ObjectBase.pyTransportMaps/Maps/TransportMapBase.pyTransportMaps/Functionals/MonotonicFunctionApproximations.pyTransportMaps/Maps/FullTransportMaps.pyTransportMaps/Distributions/FrozenDistributions.pyTransportMaps/Maps/MapBase.py76b7bbafd2fd128f31d92e5ec3c03a3fae997fd01514420875000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itadding reset counters functionalities 2017-12-27 19:27:55 -050076b7bbafd2fd128f31d92e5ec3c03a3fae997fd0adding reset counters functionalitieseditTransportMaps/Maps/TransportMapBase.pyeditTransportMaps/ObjectBase.pyeditTransportMaps/Maps/MapBase.pyeditTransportMaps/Functionals/MonotonicFunctionApproximations.pyeditTransportMaps/Maps/FullTransportMaps.pyeditTransportMaps/Distributions/FrozenDistributions.pyTransportMaps/Maps/TransportMapBase.pyTransportMaps/Functionals/MonotonicFunctionApproximations.pyTransportMaps/Distributions/TransportMapDistributions.py8ffc4f3fa238705a0d6d4396f12bb1d4c6ecb3b21514422625000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itcounting and resetting works. Caching also seems to work. TODO: Integrate into the optimization routines 2017-12-27 19:57:05 -05008ffc4f3fa238705a0d6d4396f12bb1d4c6ecb3b2counting and resetting works. Caching also seems to work. TODO:editTransportMaps/Maps/TransportMapBase.pyeditTransportMaps/Distributions/TransportMapDistributions.pyeditTransportMaps/Functionals/MonotonicFunctionApproximations.pyTransportMaps/Maps/TransportMapBase.pyTransportMaps/Misc.pyTransportMaps/Distributions/TransportMapDistributions.py5935997e9b049497e2be250e1aebb51b5476830d1514475369000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itcaching does what is supposed to do! 2017-12-28 10:36:09 -05005935997e9b049497e2be250e1aebb51b5476830dcaching does what is supposed to do!editTransportMaps/Distributions/TransportMapDistributions.pyeditTransportMaps/Misc.pyeditTransportMaps/Maps/TransportMapBase.pyManualTests/test_caching_and_counting.pyf91f8e7feb8dd0e08d7884b48c39a0cda6f89ceb1514475508000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itadded manual test for caching and counting 2017-12-28 10:38:28 -0500f91f8e7feb8dd0e08d7884b48c39a0cda6f89cebadded manual test for caching and countingaddManualTests/test_caching_and_counting.pyTransportMaps/Maps/TransportMapBase.pyTransportMaps/Routines.pyTransportMaps/Maps/TriangularTransportMapBase.py5823242188d29df0572d41fcc6fe83e5ff96ca7c1514477517000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on caching minimization routine 2017-12-28 11:11:57 -05005823242188d29df0572d41fcc6fe83e5ff96ca7cworking on caching minimization routineeditTransportMaps/Routines.pyeditTransportMaps/Maps/TriangularTransportMapBase.pyeditTransportMaps/Maps/TransportMapBase.pyTransportMaps/tests/test_kl_divergence.pyTransportMaps/Distributions/TransportMapDistributions.pyTransportMaps/Maps/TransportMapBase.pyTransportMaps/Maps/TriangularTransportMapBase.pyTransportMaps/Distributions/FrozenDistributions.pyTransportMaps/Maps/TriangularTransportMaps.pyc5c988831ff75c5437be6007af970874fa2b093d1514485297000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on unit tests for kl-divergence 2017-12-28 13:21:37 -0500c5c988831ff75c5437be6007af970874fa2b093dworking on unit tests for kl-divergenceeditTransportMaps/Maps/TriangularTransportMaps.pyeditTransportMaps/Distributions/FrozenDistributions.pyeditTransportMaps/tests/test_kl_divergence.pyeditTransportMaps/Maps/TriangularTransportMapBase.pyeditTransportMaps/Maps/TransportMapBase.pyeditTransportMaps/Distributions/TransportMapDistributions.pyTransportMaps/tests/test_kl_divergence.pyTransportMaps/tests/TestFunctions.pyTransportMaps/Distributions/TransportMapDistributions.pyTransportMaps/Distributions/FrozenDistributions.pyTransportMaps/Maps/TransportMapBase.pyTransportMaps/Functionals/MonotonicFunctionApproximations.pyTransportMaps/Misc.pyTransportMaps/Maps/TriangularTransportMapBase.pyTransportMaps/Maps/MapBase.pya2d03ec5162f3b81dc20c5c40b815b28d70052871514503984000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on test_kl_divergence.py 2017-12-28 18:33:04 -0500a2d03ec5162f3b81dc20c5c40b815b28d7005287working on test_kl_divergence.pyeditTransportMaps/Misc.pyeditTransportMaps/Maps/MapBase.pyeditTransportMaps/Maps/TransportMapBase.pyeditTransportMaps/tests/TestFunctions.pyeditTransportMaps/Distributions/FrozenDistributions.pyeditTransportMaps/Maps/TriangularTransportMapBase.pyeditTransportMaps/Functionals/MonotonicFunctionApproximations.pyeditTransportMaps/Distributions/TransportMapDistributions.pyeditTransportMaps/tests/test_kl_divergence.pyTransportMaps/Functionals/AlgebraicLinearSpanApproximations.pyTransportMaps/tests/test_kl_divergence.pyTransportMaps/Distributions/TransportMapDistributions.pyTransportMaps/Maps/TransportMapBase.pyTransportMaps/Maps/MapBase.pyafaca4f573505e47618bf14dd73b3890ff13d9691514602629000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itfixing an error at a time... 2017-12-29 21:57:09 -0500afaca4f573505e47618bf14dd73b3890ff13d969fixing an error at a time...editTransportMaps/Functionals/AlgebraicLinearSpanApproximations.pyeditTransportMaps/tests/test_kl_divergence.pyeditTransportMaps/Maps/TransportMapBase.pyeditTransportMaps/Maps/MapBase.pyeditTransportMaps/Distributions/TransportMapDistributions.pyTransportMaps/Maps/TransportMapBase.pyTransportMaps/Functionals/ProductDistributionParametricPullbackComponentFunctionBase.pyTransportMaps/Maps/TriangularTransportMapBase.pyTransportMaps/Maps/MapBase.pyTransportMaps/Maps/TriangularTransportMaps.py1be890a1311aa6179372eb77262422c3b84147c51514643650000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itkl_min tests work! 2017-12-30 09:20:50 -05001be890a1311aa6179372eb77262422c3b84147c5kl_min tests work!editTransportMaps/Maps/TransportMapBase.pyeditTransportMaps/Maps/MapBase.pyeditTransportMaps/Functionals/ProductDistributionParametricPullbackComponentFunctionBase.pyeditTransportMaps/Maps/TriangularTransportMapBase.pyeditTransportMaps/Maps/TriangularTransportMaps.pyTransportMaps/Functionals/AlgebraicLinearSpanApproximations.pyTransportMaps/Distributions/Examples/SimpleDistributions.pyTransportMaps/Algorithms/SequentialInference/SequentialInferenceBase.pyTransportMaps/Algorithms/SequentialInference/LinearSequentialInference.pyTransportMaps/Distributions/DistributionBase.pyTransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.pyTransportMaps/Maps/Decomposable/SequentialInferenceMaps.pyTransportMaps/Maps/TransportMapBase.pyTransportMaps/Distributions/Inference/InferenceBase.pyTransportMaps/Maps/MapBase.pyfcc522838031aad880c8dd84d5095d30d2c222601514655176000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itfixing all unit tests 2017-12-30 12:32:56 -0500fcc522838031aad880c8dd84d5095d30d2c22260fixing all unit testseditTransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.pyeditTransportMaps/Maps/Decomposable/SequentialInferenceMaps.pyeditTransportMaps/Maps/MapBase.pyeditTransportMaps/Algorithms/SequentialInference/SequentialInferenceBase.pyeditTransportMaps/Distributions/DistributionBase.pyeditTransportMaps/Distributions/Inference/InferenceBase.pyeditTransportMaps/Algorithms/SequentialInference/LinearSequentialInference.pyeditTransportMaps/Functionals/AlgebraicLinearSpanApproximations.pyeditTransportMaps/Distributions/Examples/SimpleDistributions.pyeditTransportMaps/Maps/TransportMapBase.pyTransportMaps/Functionals/LinearSpanApproximationBase.pyTransportMaps/Samplers/MarkovChainSamplers.pyTransportMaps/Distributions/ParametricDistributionBase.pyTransportMaps/Maps/TransportMapBase.pyTransportMaps/Routines.pyTransportMaps/Maps/TriangularTransportMapBase.pyTransportMaps/Maps/MapBase.pyTransportMaps/tests/test_kl_divergence.pyTransportMaps/Distributions/TransportMapDistributions.pyTransportMaps/Samplers/IndependentSamplers.pyTransportMaps/tests/test_L2_misfit.pyTransportMaps/Maps/TriangularTransportMaps.pyTransportMaps/Functionals/ParametricFunctionApproximationBase.pyTransportMaps/Functionals/MonotonicFunctionApproximations.pyTransportMaps/Misc.pydeae761051d029b6a1b240a1233df42051efabf11515278476000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itporting MPI implementation to mpi_map v2.0 2018-01-06 17:41:16 -0500deae761051d029b6a1b240a1233df42051efabf1porting MPI implementation to mpi_map v2.0editTransportMaps/Maps/TriangularTransportMaps.pyeditTransportMaps/Maps/TransportMapBase.pyeditTransportMaps/Functionals/ParametricFunctionApproximationBase.pyeditTransportMaps/Distributions/TransportMapDistributions.pyeditTransportMaps/Distributions/ParametricDistributionBase.pyeditTransportMaps/Samplers/MarkovChainSamplers.pyeditTransportMaps/Functionals/LinearSpanApproximationBase.pyeditTransportMaps/Samplers/IndependentSamplers.pyeditTransportMaps/Routines.pyeditTransportMaps/Maps/MapBase.pyeditTransportMaps/tests/test_L2_misfit.pyeditTransportMaps/Maps/TriangularTransportMapBase.pyeditTransportMaps/tests/test_kl_divergence.pyeditTransportMaps/Misc.pyeditTransportMaps/Functionals/MonotonicFunctionApproximations.pyTransportMaps/Diagnostics/Routines.pyTransportMaps/tests/test_kl_divergence.pyTransportMaps/Distributions/TransportMapDistributions.pyTransportMaps/Diagnostics/Plotting.pyTransportMaps/Routines.py63e70156833ef989cf00426a7566d86e3f1aa8161515279050000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itporting to mpi_map v2.0 completed. ToBeTested!! 2018-01-06 17:50:50 -050063e70156833ef989cf00426a7566d86e3f1aa816porting to mpi_map v2.0 completed. ToBeTested!!editTransportMaps/Diagnostics/Routines.pyeditTransportMaps/Diagnostics/Plotting.pyeditTransportMaps/Routines.pyeditTransportMaps/Distributions/TransportMapDistributions.pyeditTransportMaps/tests/test_kl_divergence.pyTransportMaps/Algorithms/Adaptivity/RegressionAdaptivity.pyTransportMaps/tests/test_kl_minimization.pyTransportMaps/tests/test_transportmap_distributions_sampling.pyTransportMaps/Maps/TransportMapBase.pyTransportMaps/Routines.pyTransportMaps/Maps/TriangularTransportMapBase.pyTransportMaps/tests/test_kl_divergence.pyTransportMaps/tests/test_L2_minimization.pyTransportMaps/tests/test_L2_misfit.pyTransportMaps/Maps/TriangularTransportMaps.pyTransportMaps/Functionals/ParametricFunctionApproximationBase.pyTransportMaps/Functionals/MonotonicFunctionApproximations.pyTransportMaps/Functionals/ProductDistributionParametricPullbackComponentFunctionBase.pyTransportMaps/Misc.py994b6b4c163bd8d07ec698c9ddbd33b6dd14a2a41515448543000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itmpi_map v2 integrated and passing unit tests 2018-01-08 16:55:43 -0500994b6b4c163bd8d07ec698c9ddbd33b6dd14a2a4mpi_map v2 integrated and passing unit testseditTransportMaps/Routines.pyeditTransportMaps/Algorithms/Adaptivity/RegressionAdaptivity.pyeditTransportMaps/tests/test_L2_misfit.pyeditTransportMaps/Maps/TriangularTransportMaps.pyeditTransportMaps/tests/test_kl_minimization.pyeditTransportMaps/Functionals/MonotonicFunctionApproximations.pyeditTransportMaps/Functionals/ProductDistributionParametricPullbackComponentFunctionBase.pyeditTransportMaps/tests/test_L2_minimization.pyeditTransportMaps/tests/test_kl_divergence.pyeditTransportMaps/Maps/TriangularTransportMapBase.pyeditTransportMaps/Functionals/ParametricFunctionApproximationBase.pyeditTransportMaps/Misc.pyeditTransportMaps/tests/test_transportmap_distributions_sampling.pyeditTransportMaps/Maps/TransportMapBase.pyTransportMaps/Distributions/ConditionalDistributions.pyTransportMaps/Distributions/DistributionBase.pyTransportMaps/Maps/Decomposable/SequentialInferenceMaps.pyTransportMaps/ObjectBase.pyTransportMaps/Maps/TransportMapBase.pyTransportMaps/Maps/TriangularTransportMapBase.pyTransportMaps/Maps/MapBase.pyTransportMaps/Likelihoods/LikelihoodBase.pyTransportMaps/Distributions/TransportMapDistributions.pyTransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.pyTransportMaps/Maps/TriangularTransportMaps.pyTransportMaps/Functionals/MonotonicFunctionApproximations.pyTransportMaps/Functionals/FunctionBase.pyTransportMaps/Distributions/Inference/InferenceBase.py3bb198231cd1ff02f5412eb79415f94565cc53111515455007000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itgathering of ncalls and nevals count at the end of optimization done 2018-01-08 18:43:27 -05003bb198231cd1ff02f5412eb79415f94565cc5311gathering of ncalls and nevals count at the end of optimization doneeditTransportMaps/Maps/TransportMapBase.pyeditTransportMaps/Maps/MapBase.pyeditTransportMaps/Maps/TriangularTransportMapBase.pyeditTransportMaps/Maps/Decomposable/SequentialInferenceMaps.pyeditTransportMaps/Distributions/DistributionBase.pyeditTransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.pyeditTransportMaps/Likelihoods/LikelihoodBase.pyeditTransportMaps/Maps/TriangularTransportMaps.pyeditTransportMaps/Distributions/Inference/InferenceBase.pyeditTransportMaps/Functionals/MonotonicFunctionApproximations.pyeditTransportMaps/Functionals/FunctionBase.pyeditTransportMaps/Distributions/TransportMapDistributions.pyeditTransportMaps/Distributions/ConditionalDistributions.pyeditTransportMaps/ObjectBase.pyTransportMaps/Maps/MapBase.py1f24c0d4b12bbfbc5b1aace2b74351df7fc0be671515457877000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itpasses unit tests 2018-01-08 19:31:17 -05001f24c0d4b12bbfbc5b1aace2b74351df7fc0be67passes unit testseditTransportMaps/Maps/MapBase.pyTransportMaps/Misc.py354df150c9c99df38d6cc48fefd952c6a52e5af61515466426000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itnow pointing to MPI_Pool_v2 in mpi_map v2.0 2018-01-08 21:53:46 -0500354df150c9c99df38d6cc48fefd952c6a52e5af6now pointing to MPI_Pool_v2 in mpi_map v2.0editTransportMaps/Misc.pyTransportMaps/Maps/TriangularTransportMapBase.pyTransportMaps/Maps/TriangularTransportMaps.py39fe065427354de01e70c88028ced9a1929d277e1515468314000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itreturning latest cache within log dictionary 2018-01-08 22:25:14 -050039fe065427354de01e70c88028ced9a1929d277ereturning latest cache within log dictionaryeditTransportMaps/Maps/TriangularTransportMapBase.pyeditTransportMaps/Maps/TriangularTransportMaps.pyTransportMaps/Misc.pya59001c198dca7ea9a5b84f2dded9cb8486850d31515469616000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itfixed py2/py3 issue with cached decorator 2018-01-08 22:46:56 -0500a59001c198dca7ea9a5b84f2dded9cb8486850d3fixed py2/py3 issue with cached decoratoreditTransportMaps/Misc.pyTransportMaps/Misc.py009941d9f9f12905d772a655fd4ae4073839c0641515469911000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itfixed py2/py3 issue with cached decorator 2018-01-08 22:51:51 -0500009941d9f9f12905d772a655fd4ae4073839c064fixed py2/py3 issue with cached decoratoreditTransportMaps/Misc.pyTransportMaps/Distributions/FrozenDistributions.py0ba2d483296f6fa2fe34821d72c6cddbe7b2937c1515470076000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itfixed py2/py3 issue with cached decorator 2018-01-08 22:54:36 -05000ba2d483296f6fa2fe34821d72c6cddbe7b2937cfixed py2/py3 issue with cached decoratoreditTransportMaps/Distributions/FrozenDistributions.pyrequirements-MPI.txtTransportMaps/tests/test_distributions.pyTransportMaps/Distributions/DistributionBase.pyTransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.pysetup.pyrequirements-PYHMC.txtTransportMaps/Misc.pyTransportMaps/Distributions/Examples/StochasticVolatility/StocVolHyperDistributions.pyTransportMaps/Distributions/Inference/InferenceBase.pyTransportMaps/Likelihoods/LikelihoodBase.py208e3e59f4bdc172cc5a9d3673892f9dfde8835a1515516908000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itfixing py2/py3 handling of *args and **kwargs (PEP3102) 2018-01-09 11:55:08 -0500208e3e59f4bdc172cc5a9d3673892f9dfde8835afixing py2/py3 handling of *args and **kwargs (PEP3102)editTransportMaps/Misc.pyeditrequirements-MPI.txteditTransportMaps/Distributions/Examples/StochasticVolatility/StocVolHyperDistributions.pyeditTransportMaps/Likelihoods/LikelihoodBase.pyeditTransportMaps/tests/test_distributions.pyeditTransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.pyeditTransportMaps/Distributions/Inference/InferenceBase.pyeditTransportMaps/Distributions/DistributionBase.pyaddrequirements-PYHMC.txteditsetup.pyTransportMaps/Distributions/Inference/InferenceBase.pyExamples/research/Helmholtz/HelmholtzModelDistributions.pyTransportMaps/Likelihoods/LikelihoodBase.py2271d6e49bec916958ff7633a8c403bddd381c531515534963000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on target distribution 2018-01-09 16:56:03 -05002271d6e49bec916958ff7633a8c403bddd381c53working on target distributioneditExamples/research/Helmholtz/HelmholtzModelDistributions.pyeditTransportMaps/Distributions/Inference/InferenceBase.pyeditTransportMaps/Likelihoods/LikelihoodBase.pyExamples/research/Helmholtz/test_distribution.py3067adb6eba22a53bc3c9642cc43e3ca4cba05a41515625380000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on mpi evaluation of target density 2018-01-10 18:03:00 -05003067adb6eba22a53bc3c9642cc43e3ca4cba05a4working on mpi evaluation of target densityaddExamples/research/Helmholtz/test_distribution.pyTransportMaps/FiniteDifference.pyExamples/research/Helmholtz/ConstantFieldDataGeneration.pyExamples/research/Helmholtz/DataGeneration.pyExamples/research/Helmholtz/test_distribution.pyExamples/research/Helmholtz/HelmholtzModelDistributions.pyTransportMaps/Misc.pyExamples/research/Helmholtz/FieldDataGeneration.py531d232f73124ff38cd5737036c9b9a1bcec6cb61516045875000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on constant field data generation and parallel implementation 2018-01-15 14:51:15 -0500531d232f73124ff38cd5737036c9b9a1bcec6cb6working on constant field data generation and parallel implementationeditTransportMaps/FiniteDifference.pyeditExamples/research/Helmholtz/test_distribution.pyaddExamples/research/Helmholtz/ConstantFieldDataGeneration.pydeleteExamples/research/Helmholtz/DataGeneration.pyeditTransportMaps/Misc.pyeditExamples/research/Helmholtz/HelmholtzModelDistributions.pyaddExamples/research/Helmholtz/FieldDataGeneration.pyExamples/research/Helmholtz/ConstantFieldDataGeneration.pyExamples/research/Helmholtz/test_distribution.pyExamples/research/Helmholtz/HelmholtzModelDistributions.pyTransportMaps/Maps/MapBase.pyTransportMaps/Likelihoods/LikelihoodBase.py03e24705c31ce1fd0635a8c0e4b7174fee22483b1516072106000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on speeding up function and gradient evaluatiions 2018-01-15 22:08:26 -050003e24705c31ce1fd0635a8c0e4b7174fee22483bworking on speeding up function and gradient evaluatiionseditTransportMaps/Maps/MapBase.pyeditExamples/research/Helmholtz/ConstantFieldDataGeneration.pyeditExamples/research/Helmholtz/test_distribution.pyeditTransportMaps/Likelihoods/LikelihoodBase.pyeditExamples/research/Helmholtz/HelmholtzModelDistributions.pyExamples/research/Helmholtz/HelmholtzModelDistributions.pyExamples/research/Helmholtz/test_distribution.pyTransportMaps/Misc.pyTransportMaps/Maps/MapBase.pyTransportMaps/Likelihoods/LikelihoodBase.py86e20bb859c29f9f195274fb15ded7750e43fef61516075910000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itimplemented fungrad 2018-01-15 23:11:50 -050086e20bb859c29f9f195274fb15ded7750e43fef6implemented fungradeditExamples/research/Helmholtz/HelmholtzModelDistributions.pyeditExamples/research/Helmholtz/test_distribution.pyeditTransportMaps/Maps/MapBase.pyeditTransportMaps/Likelihoods/LikelihoodBase.pyeditTransportMaps/Misc.pyTransportMaps/Distributions/ConditionalDistributions.pyTransportMaps/Distributions/TransportMapDistributions.pyTransportMaps/Distributions/DistributionBase.pyTransportMaps/Maps/Decomposable/SequentialInferenceMaps.pyTransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.pyExamples/research/Helmholtz/HelmholtzModelDistributions.pyExamples/research/Helmholtz/test_distribution.pyTransportMaps/Maps/TransportMapBase.pyTransportMaps/Misc.pyTransportMaps/Distributions/Inference/InferenceBase.pyTransportMaps/Maps/MapBase.pyTransportMaps/Likelihoods/LikelihoodBase.py5e99c59bc02ddfc76dfad4532d27260bf98b7f091516120988000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking of action of Hessian 2018-01-16 11:43:08 -05005e99c59bc02ddfc76dfad4532d27260bf98b7f09working of action of HessianeditTransportMaps/Distributions/ConditionalDistributions.pyeditTransportMaps/Distributions/DistributionBase.pyeditTransportMaps/Misc.pyeditTransportMaps/Distributions/Inference/InferenceBase.pyeditTransportMaps/Maps/MapBase.pyeditTransportMaps/Distributions/TransportMapDistributions.pyeditTransportMaps/Maps/Decomposable/SequentialInferenceMaps.pyeditTransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.pyeditTransportMaps/Maps/TransportMapBase.pyeditExamples/research/Helmholtz/HelmholtzModelDistributions.pyeditExamples/research/Helmholtz/test_distribution.pyeditTransportMaps/Likelihoods/LikelihoodBase.pyTransportMaps/Misc.pyExamples/research/Helmholtz/HelmholtzModelDistributions.pyExamples/research/Helmholtz/test_distribution.pya05dd6d138f1b8e2eeff76e81d14e5340fe7847e1516139482000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itmpi implementation not working... 2018-01-16 16:51:22 -0500a05dd6d138f1b8e2eeff76e81d14e5340fe7847empi implementation not working...editExamples/research/Helmholtz/HelmholtzModelDistributions.pyeditTransportMaps/Misc.pyeditExamples/research/Helmholtz/test_distribution.pyExamples/research/Helmholtz/HelmholtzModelDistributions.pyTransportMaps/Maps/TransportMapBase.pyscripts/tmap-tmTransportMaps/Maps/TriangularTransportMapBase.pyTransportMaps/Maps/TriangularTransportMaps.pyTransportMaps/Maps/MapBase.py02fd425f7df600d66bd63000a5ad809751f1ffd11516169102000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itstaring solving simple problems.. 2018-01-17 01:05:02 -050002fd425f7df600d66bd63000a5ad809751f1ffd1staring solving simple problems..editTransportMaps/Maps/TriangularTransportMaps.pyeditTransportMaps/Maps/TransportMapBase.pyeditscripts/tmap-tmeditExamples/research/Helmholtz/HelmholtzModelDistributions.pyeditTransportMaps/Maps/MapBase.pyeditTransportMaps/Maps/TriangularTransportMapBase.pyscripts/tmap-tmTransportMaps/Samplers/MarkovChainSamplers.pyTransportMaps/CLI/PostprocessBase.pyExamples/research/Helmholtz/HelmholtzModelDistributions.pyDocs/source/example-beta-1d.ipynbExamples/research/Helmholtz/test_distribution.pyTransportMaps/Samplers/Routines.py16d0c3fd8c72c8142e966384bc4570d47e8f004f1516253719000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on constant field problem and parallelization 2018-01-18 00:35:19 -050016d0c3fd8c72c8142e966384bc4570d47e8f004fworking on constant field problem and parallelizationeditExamples/research/Helmholtz/HelmholtzModelDistributions.pyeditTransportMaps/Samplers/Routines.pyeditDocs/source/example-beta-1d.ipynbeditExamples/research/Helmholtz/test_distribution.pyeditscripts/tmap-tmeditTransportMaps/CLI/PostprocessBase.pyeditTransportMaps/Samplers/MarkovChainSamplers.pyscripts/tmap-tmTransportMaps/Distributions/FrozenDistributions.pyExamples/research/Helmholtz/HelmholtzModelDistributions.pyExamples/research/Helmholtz/test_distribution.pyscripts/tmap-postprocessTransportMaps/Misc.pyTransportMaps/Diagnostics/Plotting.py7fee690755521960d6195d5654e73e0e8620e56c1516571995000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on the problem set up 2018-01-21 16:59:55 -05007fee690755521960d6195d5654e73e0e8620e56cworking on the problem set upeditscripts/tmap-tmeditExamples/research/Helmholtz/HelmholtzModelDistributions.pyeditTransportMaps/Distributions/FrozenDistributions.pyeditExamples/research/Helmholtz/test_distribution.pyeditTransportMaps/Misc.pyeditscripts/tmap-postprocesseditTransportMaps/Diagnostics/Plotting.pyExamples/research/EIT/NoElectrode/Adjoint-test-analytic.pyExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.pyExamples/research/EIT/NoElectrode/ConstantFieldDataGeneration.pyExamples/research/EIT/NoElectrode/solver.py3f82cd0324f3fada136bbcbedc5d5b654a3589d01516601991000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itdata generation for constant field works 2018-01-22 01:19:51 -05003f82cd0324f3fada136bbcbedc5d5b654a3589d0data generation for constant field worksaddExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.pyaddExamples/research/EIT/NoElectrode/ConstantFieldDataGeneration.pyaddExamples/research/EIT/NoElectrode/Adjoint-test-analytic.pyeditExamples/research/EIT/NoElectrode/solver.pyExamples/research/EIT/NoElectrode/Adjoint-test-field.pyExamples/research/EIT/NoElectrode/Adjoint-test-analytic.pyExamples/research/EIT/NoElectrode/ConstantFieldDataGeneration.pyExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.pyffdfff50d0737830d5d087be0c9d90448addb3ac1516688607000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on adjoint for field 2018-01-23 01:23:27 -0500ffdfff50d0737830d5d087be0c9d90448addb3acworking on adjoint for fieldaddExamples/research/EIT/NoElectrode/Adjoint-test-field.pyeditExamples/research/EIT/NoElectrode/ConstantFieldDataGeneration.pyeditExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.pyeditExamples/research/EIT/NoElectrode/Adjoint-test-analytic.pyExamples/research/EIT/NoElectrode/Adjoint-test-field.pyExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.py8285b4228878259e860a0352c94bea97994c0cee1516729213000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itfixed gradient! 2018-01-23 12:40:13 -05008285b4228878259e860a0352c94bea97994c0ceefixed gradient!editExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.pyeditExamples/research/EIT/NoElectrode/Adjoint-test-field.pyExamples/research/EIT/NoElectrode/Adjoint-test-analytic.pyExamples/research/EIT/NoElectrode/GaussianFieldDataGeneration.pyExamples/research/EIT/NoElectrode/Adjoint-test.pyExamples/research/EIT/NoElectrode/Adjoint-test-field.pyExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.pyExamples/research/Helmholtz/HelmholtzModelDistributions.pyExamples/research/EIT/NoElectrode/Adjoint-test-const.pyTransportMaps/Misc.pyExamples/research/EIT/NoElectrode/DirBC-Adjoint-test.pyef50f6abe8deff22a063193a685f1a47757d86d61516817556000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on Hessian of EIT problem 2018-01-24 13:12:36 -0500ef50f6abe8deff22a063193a685f1a47757d86d6working on Hessian of EIT problemeditExamples/research/Helmholtz/HelmholtzModelDistributions.pyeditTransportMaps/Misc.pydeleteExamples/research/EIT/NoElectrode/DirBC-Adjoint-test.pyaddExamples/research/EIT/NoElectrode/GaussianFieldDataGeneration.pyaddExamples/research/EIT/NoElectrode/Adjoint-test-const.pyeditExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.pydeleteExamples/research/EIT/NoElectrode/Adjoint-test-analytic.pydeleteExamples/research/EIT/NoElectrode/Adjoint-test.pyeditExamples/research/EIT/NoElectrode/Adjoint-test-field.pyExamples/research/EIT/NoElectrode/Adjoint-test-field.pyTransportMaps/FiniteDifference.py751f28a5afa8d75f50f543d23c9b45ecf84ff1141516856566000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on hessian 2018-01-25 00:02:46 -0500751f28a5afa8d75f50f543d23c9b45ecf84ff114working on hessianeditExamples/research/EIT/NoElectrode/Adjoint-test-field.pyeditTransportMaps/FiniteDifference.pyExamples/research/EIT/NoElectrode/ConstantFieldDataGeneration.pyTransportMaps/Distributions/DistributionBase.pyscripts/tmap-sequential-tmTransportMaps/CLI/PostprocessBase.pyTransportMaps/Diagnostics/Plotting.pyTransportMaps/Maps/TriangularTransportMapBase.pyTransportMaps/Maps/MapBase.pyTransportMaps/Maps/SimpleTransportMaps.py2a48e701feca1870ad27811802d5df51a76d9fa71517200409000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itfixed counter reset in some classes 2018-01-28 23:33:29 -05002a48e701feca1870ad27811802d5df51a76d9fa7fixed counter reset in some classeseditTransportMaps/Diagnostics/Plotting.pyeditExamples/research/EIT/NoElectrode/ConstantFieldDataGeneration.pyeditscripts/tmap-sequential-tmeditTransportMaps/Maps/TriangularTransportMapBase.pyeditTransportMaps/CLI/PostprocessBase.pyeditTransportMaps/Maps/MapBase.pyeditTransportMaps/Distributions/DistributionBase.pyeditTransportMaps/Maps/SimpleTransportMaps.pyTransportMaps/Maps/TransportMapBase.pyf94f55b732074577f4e821e61e9260ad7277e5d01517334735000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itfixing regularization 2018-01-30 12:52:15 -0500f94f55b732074577f4e821e61e9260ad7277e5d0fixing regularizationeditTransportMaps/Maps/TransportMapBase.pyTransportMaps/Misc.pybd39a396f3bfd5c2aa7d1db83836fd90d96987481517341792000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itfixed caching for tuple_grad_a 2018-01-30 14:49:52 -0500bd39a396f3bfd5c2aa7d1db83836fd90d9698748fixed caching for tuple_grad_aeditTransportMaps/Misc.pyTransportMaps/tests/test_transportmap_distributions.pyTransportMaps/Functionals/LinearSpanApproximationBase.pyTransportMaps/Functionals/ParametricFunctionApproximationBase.pyTransportMaps/Distributions/FrozenDistributions.pyExamples/stable/StochasticVolatility/DataGeneration.py3e4d38e8f1a88581d35c424d8bda8800ac1ebbf61517429349000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itfixed some issues with tests and new counting decorators 2018-01-31 15:09:09 -05003e4d38e8f1a88581d35c424d8bda8800ac1ebbf6fixed some issues with tests and new counting decoratorseditTransportMaps/Distributions/FrozenDistributions.pyeditTransportMaps/Functionals/ParametricFunctionApproximationBase.pyeditTransportMaps/tests/test_transportmap_distributions.pyeditTransportMaps/Functionals/LinearSpanApproximationBase.pyeditExamples/stable/StochasticVolatility/DataGeneration.pyExamples/research/EIT/NoElectrode/Adjoint-test-field.pyExamples/research/EIT/NoElectrode/solver.py6e7569ce807c13c411e92970f895946ac37c1fad1517451920000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itaction of the Hessian for EIT works. To be integrated in distribution definition 2018-01-31 21:25:20 -05006e7569ce807c13c411e92970f895946ac37c1fadaction of the Hessian for EIT works. To be integrated in distributioneditExamples/research/EIT/NoElectrode/Adjoint-test-field.pyeditExamples/research/EIT/NoElectrode/solver.pyTransportMaps/Misc.pyExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.pyExamples/research/EIT/NoElectrode/GaussianFieldDataGeneration.py1d9a9186e1462aff46c4a2d2e0d0a7d690808f151517458843000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.iteit hessian works with caching of solution and adjoints 2018-01-31 23:20:43 -05001d9a9186e1462aff46c4a2d2e0d0a7d690808f15eit hessian works with caching of solution and adjointseditExamples/research/EIT/NoElectrode/GaussianFieldDataGeneration.pyeditTransportMaps/Misc.pyeditExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.pyExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.pyExamples/research/EIT/NoElectrode/GmshGeoGenerator.pyExamples/research/EIT/NoElectrode/test_distribution.pyExamples/research/EIT/NoElectrode/GaussianFieldDataGeneration.pyTransportMaps/Misc.py59ec34c0a998e48322c44081fa79dd40e2574cb21517958704000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itEIT field distribution works with MPI 2018-02-06 18:11:44 -050059ec34c0a998e48322c44081fa79dd40e2574cb2EIT field distribution works with MPIaddExamples/research/EIT/NoElectrode/test_distribution.pyeditExamples/research/EIT/NoElectrode/GmshGeoGenerator.pyeditTransportMaps/Misc.pyeditExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.pyeditExamples/research/EIT/NoElectrode/GaussianFieldDataGeneration.pyExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.pyExamples/research/EIT/NoElectrode/test_distribution.pyExamples/research/EIT/NoElectrode/GaussianFieldDataGeneration.py7bd381c45ba6688d0ea13e0f91f848d085523fee1518024854000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itadded possibility to add real fields by expression 2018-02-07 12:34:14 -05007bd381c45ba6688d0ea13e0f91f848d085523feeadded possibility to add real fields by expressioneditExamples/research/EIT/NoElectrode/test_distribution.pyeditExamples/research/EIT/NoElectrode/GaussianFieldDataGeneration.pyeditExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.pyExamples/research/EIT/NoElectrode/test_distribution.py4f93f2a3e1fffa16c0ae7786e644908974d3f5fd1518029564000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itdisabled plotting if not available 2018-02-07 13:52:44 -05004f93f2a3e1fffa16c0ae7786e644908974d3f5fddisabled plotting if not availableeditExamples/research/EIT/NoElectrode/test_distribution.pyExamples/research/EIT/NoElectrode/submit_slurm.shExamples/research/EIT/NoElectrode/test_distribution_mpi.pyExamples/research/EIT/NoElectrode/test_distribution.py5346e46e4d1b38aa314dbf73aaff524dc988cbc81518045881000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itdistributions work on cluster 2018-02-07 18:24:41 -05005346e46e4d1b38aa314dbf73aaff524dc988cbc8distributions work on clusteraddExamples/research/EIT/NoElectrode/submit_slurm.shaddExamples/research/EIT/NoElectrode/test_distribution_mpi.pyeditExamples/research/EIT/NoElectrode/test_distribution.pyExamples/research/EIT/NoElectrode/test_distribution.py8840b48fc6cded8ead0fd7ada53715ba22a9d7451518209228000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itmade EIT solver into a class 2018-02-09 15:47:08 -05008840b48fc6cded8ead0fd7ada53715ba22a9d745made EIT solver into a classeditExamples/research/EIT/NoElectrode/test_distribution.pyTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyTransportMaps/Distributions/ConditionalDistributions.pyTransportMaps/Diagnostics/Validators.pyTransportMaps/__init__.pyTransportMaps/Distributions/DistributionBase.pyTransportMaps/Maps/Decomposable/SequentialInferenceMaps.pyExamples/research/adaptivity/tests/test_validators.pyTransportMaps/Diagnostics/__init__.pyTransportMaps/ObjectBase.pyTransportMaps/Maps/TransportMapBase.pyTransportMaps/Likelihoods/LikelihoodBase.pyTransportMaps/Maps/MapBase.pyTransportMaps/Distributions/TransportMapDistributions.pyTransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.pyTransportMaps/Maps/TriangularTransportMaps.pyTransportMaps/Functionals/MonotonicFunctionApproximations.pyTransportMaps/Misc.pyTransportMaps/Distributions/Inference/InferenceBase.py0b4667ec243bfffdb0573e62abed0afeb22066c31518565000000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on validators 2018-02-13 18:36:40 -05000b4667ec243bfffdb0573e62abed0afeb22066c3working on validatorseditTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyeditTransportMaps/Distributions/ConditionalDistributions.pyaddExamples/research/adaptivity/tests/test_validators.pyeditTransportMaps/Distributions/TransportMapDistributions.pyeditTransportMaps/Maps/Decomposable/SequentialInferenceMaps.pyaddTransportMaps/Diagnostics/Validators.pyeditTransportMaps/Functionals/MonotonicFunctionApproximations.pyeditTransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.pyeditTransportMaps/Diagnostics/__init__.pyeditTransportMaps/Likelihoods/LikelihoodBase.pyeditTransportMaps/Maps/MapBase.pyeditTransportMaps/Distributions/DistributionBase.pyeditTransportMaps/Maps/TriangularTransportMaps.pyeditTransportMaps/__init__.pyeditTransportMaps/ObjectBase.pyeditTransportMaps/Distributions/Inference/InferenceBase.pyeditTransportMaps/Misc.pyeditTransportMaps/Maps/TransportMapBase.pyExamples/research/adaptivity/tests/test_validators.pyTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyTransportMaps/Diagnostics/Validators.pyTransportMaps/Misc.pyda2a8c88c1e83e24a93edbc2addece7a059efb521518627963000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on saa 2018-02-14 12:06:03 -0500da2a8c88c1e83e24a93edbc2addece7a059efb52working on saaeditExamples/research/adaptivity/tests/test_validators.pyeditTransportMaps/Diagnostics/Validators.pyeditTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyeditTransportMaps/Misc.pyExamples/research/adaptivity/tests/test_validators.pyTransportMaps/Misc.pyTransportMaps/Diagnostics/Validators.py779017b672e059857c9a4118ba68676c95535c8e1518910629000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itimplementing gradient based validators 2018-02-17 18:37:09 -0500779017b672e059857c9a4118ba68676c95535c8eimplementing gradient based validatorseditTransportMaps/Misc.pyeditExamples/research/adaptivity/tests/test_validators.pyeditTransportMaps/Diagnostics/Validators.pyExamples/research/adaptivity/tests/test_validators.pyTransportMaps/Diagnostics/Validators.py858a6fb9bae9b5f75e9d4749b8c21612de755e8d1518968056000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itvalidators... 2018-02-18 10:34:16 -0500858a6fb9bae9b5f75e9d4749b8c21612de755e8dvalidators...editExamples/research/adaptivity/tests/test_validators.pyeditTransportMaps/Diagnostics/Validators.pyTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyExamples/research/adaptivity/tests/test_validators.pyTransportMaps/Diagnostics/Validators.pyTransportMaps/Routines.pya0bd9deec4a1b32b5c39c4ef9b3bd8f0afd8848f1519171907000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on adaptivity algorithm 2018-02-20 19:11:47 -0500a0bd9deec4a1b32b5c39c4ef9b3bd8f0afd8848fworking on adaptivity algorithmeditTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyeditExamples/research/adaptivity/tests/test_validators.pyeditTransportMaps/Diagnostics/Validators.pyeditTransportMaps/Routines.pyTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py216c7231566cc4167f5a45be5e3032c96c7d38811519259263000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on the adaptivity algorithm 2018-02-21 19:27:43 -0500216c7231566cc4167f5a45be5e3032c96c7d3881working on the adaptivity algorithmeditTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyTransportMaps/CLI/AvailableOptions.pyTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyTransportMaps/Diagnostics/Validators.pyscripts/tmap-tmTransportMaps/Maps/TriangularTransportMaps.pyTransportMaps/ObjectBase.pyTransportMaps/Maps/TriangularTransportMapBase.pyc62d436424ddda20bfbcdca90d2ec70597fbc8fb1519342274000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itadding adaptivity options to tmap-tm 2018-02-22 18:31:14 -0500c62d436424ddda20bfbcdca90d2ec70597fbc8fbadding adaptivity options to tmap-tmeditTransportMaps/CLI/AvailableOptions.pyeditTransportMaps/Maps/TriangularTransportMaps.pyeditTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyeditTransportMaps/Diagnostics/Validators.pyeditscripts/tmap-tmeditTransportMaps/Maps/TriangularTransportMapBase.pyeditTransportMaps/ObjectBase.pyTransportMaps/CLI/AvailableOptions.pyTransportMaps/Diagnostics/Validators.pyscripts/tmap-tmTransportMaps/Misc.pya24b7dea6d030f11dbf76fddcda7614ce33750841519355586000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on launching script tmap-tm 2018-02-22 22:13:06 -0500a24b7dea6d030f11dbf76fddcda7614ce3375084working on launching script tmap-tmeditTransportMaps/Misc.pyeditTransportMaps/CLI/AvailableOptions.pyeditscripts/tmap-tmeditTransportMaps/Diagnostics/Validators.pyTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyscripts/tmap-tm52f31e2de26ffdcbb0b78757ba28312b68975fe31519403301000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itchanging builder classes to imbed parameters and take distributions on solve 2018-02-23 11:28:21 -050052f31e2de26ffdcbb0b78757ba28312b68975fe3changing builder classes to imbed parameters and take distributions oneditTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyeditscripts/tmap-tmTransportMaps/Functionals/AlgebraicLinearSpanApproximations.pyTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyTransportMaps/Algorithms/Adaptivity/RegressionAdaptivity.pyTransportMaps/Functionals/LinearSpanApproximationBase.pyTransportMaps/Diagnostics/Validators.pyscripts/tmap-tmTransportMaps/Defaults.py966913b70d9f75ba38ae798e3316b4dc921c194e1519439036000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itgoing through banana example 2018-02-23 21:23:56 -0500966913b70d9f75ba38ae798e3316b4dc921c194egoing through banana exampleeditTransportMaps/Algorithms/Adaptivity/RegressionAdaptivity.pyeditscripts/tmap-tmeditTransportMaps/Diagnostics/Validators.pyeditTransportMaps/Functionals/LinearSpanApproximationBase.pyeditTransportMaps/Functionals/AlgebraicLinearSpanApproximations.pyeditTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyeditTransportMaps/Defaults.pyTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyTransportMaps/Functionals/AlgebraicLinearSpanApproximations.pyTransportMaps/Functionals/ParametricFunctionApproximationBase.pyscripts/tmap-tmfbb36fdab34f2f19fdf3350f086001059e4dc3ff1519590360000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on adaptivity on banana 2018-02-25 15:26:00 -0500fbb36fdab34f2f19fdf3350f086001059e4dc3ffworking on adaptivity on bananaeditTransportMaps/Functionals/ParametricFunctionApproximationBase.pyeditTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyeditTransportMaps/Functionals/AlgebraicLinearSpanApproximations.pyeditscripts/tmap-tmTransportMaps/tests/test_kl_divergence.pyTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyTransportMaps/Algorithms/Adaptivity/RegressionAdaptivity.pyscripts/tmap-tmTransportMaps/Maps/TriangularTransportMaps.pyTransportMaps/Defaults.pyTransportMaps/tests/test_transportmap_distributions.pyTransportMaps/Functionals/MonotonicFunctionApproximations.pyd6388446fd5406cae4c81081161fc230c311e85b1519602796000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itadaptivity on banana almost work 2018-02-25 18:53:16 -0500d6388446fd5406cae4c81081161fc230c311e85badaptivity on banana almost workeditscripts/tmap-tmeditTransportMaps/Defaults.pyeditTransportMaps/tests/test_kl_divergence.pyeditTransportMaps/tests/test_transportmap_distributions.pyeditTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyeditTransportMaps/Algorithms/Adaptivity/RegressionAdaptivity.pyeditTransportMaps/Maps/TriangularTransportMaps.pyeditTransportMaps/Functionals/MonotonicFunctionApproximations.pyTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyTransportMaps/Defaults.pyTransportMaps/Diagnostics/Validators.pyTransportMaps/Maps/TriangularTransportMapBase.pyTransportMaps/Maps/TriangularTransportMaps.pyaf282c11c8095637c110d4682f595fe0af0caf291519687221000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itadaptivity works on banana. a lot to do yet... 2018-02-26 18:20:21 -0500af282c11c8095637c110d4682f595fe0af0caf29adaptivity works on banana. a lot to do yet...editTransportMaps/Diagnostics/Validators.pyeditTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyeditTransportMaps/Maps/TriangularTransportMaps.pyeditTransportMaps/Maps/TriangularTransportMapBase.pyeditTransportMaps/Defaults.pyTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyscripts/tmap-tmTransportMaps/CLI/PostprocessBase.py6a9c18d0b06d4194392dfd9a03f921188f38462e1519709559000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itimproving parallelization 2018-02-27 00:32:39 -05006a9c18d0b06d4194392dfd9a03f921188f38462eimproving parallelizationeditTransportMaps/CLI/PostprocessBase.pyeditTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyeditscripts/tmap-tmTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyTransportMaps/Routines.pya877828c67427fdac8e1d35bfd5907539069d9db1519773899000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itsplitted first variation computation for better parallelization 2018-02-27 18:24:59 -0500a877828c67427fdac8e1d35bfd5907539069d9dbsplitted first variation computation for better parallelizationeditTransportMaps/Routines.pyeditTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyscripts/tmap-tmTransportMaps/Diagnostics/Validators.py0111a206512a53fc06ed508b7ee79ed25b7360d11519874092000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itadaptivity works on banana without hyper 2018-02-28 22:14:52 -05000111a206512a53fc06ed508b7ee79ed25b7360d1adaptivity works on banana without hypereditTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyeditTransportMaps/Diagnostics/Validators.pyeditscripts/tmap-tmTransportMaps/RandomizedLinearAlgebra/RandomizedLinearAlgebra.pyTransportMaps/tests/test_rla.pyTransportMaps/RandomizedLinearAlgebra/__init__.pyTransportMaps/__init__.pya0e98d811f87cab1737d27fd2101d6efafa05a251520031498000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on low-rank approximation of Hessians 2018-03-02 17:58:18 -0500a0e98d811f87cab1737d27fd2101d6efafa05a25working on low-rank approximation of HessiansaddTransportMaps/RandomizedLinearAlgebra/RandomizedLinearAlgebra.pyaddTransportMaps/tests/test_rla.pyaddTransportMaps/RandomizedLinearAlgebra/__init__.pyeditTransportMaps/__init__.pyTransportMaps/tests/test_laplace.pyTransportMaps/Maps/TriangularTransportMapBase.pyTransportMaps/Routines.pyTransportMaps/Maps/MapBase.pyscripts/tmap-laplace1cc7c7bca849c0291ff2fc870f5e8314896aaf731520045341000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on laplace approximation for Bayesian inverse problems, where one has access only on the action of the Hessian 2018-03-02 21:49:01 -05001cc7c7bca849c0291ff2fc870f5e8314896aaf73working on laplace approximation for Bayesian inverse problems, whereeditTransportMaps/Maps/TriangularTransportMapBase.pyeditTransportMaps/Routines.pyeditTransportMaps/Maps/MapBase.pyeditTransportMaps/tests/test_laplace.pyeditscripts/tmap-laplaceTransportMaps/Routines.pyTransportMaps/RandomizedLinearAlgebra/RandomizedLinearAlgebra.pyTransportMaps/tests/test_laplace.py052a53fa115a7c467d6433ff9fffbdcdb384473d1520121543000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on low-rank approximation of covariance in bayesian problem 2018-03-03 18:59:03 -0500052a53fa115a7c467d6433ff9fffbdcdb384473dworking on low-rank approximation of covariance in bayesian problemeditTransportMaps/RandomizedLinearAlgebra/RandomizedLinearAlgebra.pyeditTransportMaps/Routines.pyeditTransportMaps/tests/test_laplace.pyTransportMaps/Routines.pyTransportMaps/tests/test_laplace.py79c1301ffa7118c75a6d65efd20c8eeeeab8b3b91520261631000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on low-rank approximation 2018-03-05 09:53:51 -050079c1301ffa7118c75a6d65efd20c8eeeeab8b3b9working on low-rank approximationeditTransportMaps/Routines.pyeditTransportMaps/tests/test_laplace.pyTransportMaps/CLI/PostprocessBase.py2eae6b39d75bd4f25dae2382e1425850adb88ad91520263121000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itadded logging information in postprocessing script 2018-03-05 10:18:41 -05002eae6b39d75bd4f25dae2382e1425850adb88ad9added logging information in postprocessing scripteditTransportMaps/CLI/PostprocessBase.pyTransportMaps/Algorithms/Adaptivity/RegressionAdaptivity.pyTransportMaps/Routines.pyTransportMaps/Likelihoods/LikelihoodBase.pyscripts/tmap-laplace5fc966b8c5f8d043ae7a93c23e01346aab4a3df71520269281000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itlow-rank Laplace approximation works 2018-03-05 12:01:21 -05005fc966b8c5f8d043ae7a93c23e01346aab4a3df7low-rank Laplace approximation workseditTransportMaps/Likelihoods/LikelihoodBase.pyeditTransportMaps/Routines.pyeditTransportMaps/Algorithms/Adaptivity/RegressionAdaptivity.pyeditscripts/tmap-laplaceExamples/research/EIT/NoElectrode/whiten.pyTransportMaps/Distributions/TransportMapDistributions.pyExamples/research/EIT/NoElectrode/test_distribution.pyExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.pyTransportMaps/Routines.pyTransportMaps/Likelihoods/LikelihoodBase.pyTransportMaps/Maps/MapBase.py46ed5ba33095acf30dcb1e7fc1d611ef2e52a6d81520347616000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itapplying Laplace to EIT 2018-03-06 09:46:56 -050046ed5ba33095acf30dcb1e7fc1d611ef2e52a6d8applying Laplace to EITeditTransportMaps/Likelihoods/LikelihoodBase.pyeditTransportMaps/Maps/MapBase.pyaddExamples/research/EIT/NoElectrode/whiten.pyeditTransportMaps/Routines.pyeditExamples/research/EIT/NoElectrode/test_distribution.pyeditExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.pyeditTransportMaps/Distributions/TransportMapDistributions.pyTransportMaps/Routines.py3c4b5b772eca48ab6e6a3f38d0aa017c3cb49ee11520349585000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on composition of Likelihood with maps 2018-03-06 10:19:45 -05003c4b5b772eca48ab6e6a3f38d0aa017c3cb49ee1working on composition of Likelihood with mapseditTransportMaps/Routines.pyTransportMaps/Functionals/FunctionBase.pyExamples/research/EIT/NoElectrode/whiten.pyTransportMaps/Functionals/ParametricFunctionApproximationBase.py421d240b7bd822e81a33eb7e71be2167f23244441520382492000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on composition of Likelihood with maps 2018-03-06 19:28:12 -0500421d240b7bd822e81a33eb7e71be2167f2324444working on composition of Likelihood with mapseditTransportMaps/Functionals/FunctionBase.pyeditExamples/research/EIT/NoElectrode/whiten.pyeditTransportMaps/Functionals/ParametricFunctionApproximationBase.pyTransportMaps/Maps/FrozenTriangularTransportMaps.pyTransportMaps/RandomizedLinearAlgebra/RandomizedLinearAlgebra.pyTransportMaps/Functionals/FunctionBase.pyTransportMaps/Maps/MapBase.py0c9eaa3fae6f73a45bd0c4ba008980323f89047d1520398865000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itcomposition of functions and map now is possible. working on laplace of eit 2018-03-07 00:01:05 -05000c9eaa3fae6f73a45bd0c4ba008980323f89047dcomposition of functions and map now is possible. working on laplace ofeditTransportMaps/Maps/FrozenTriangularTransportMaps.pyeditTransportMaps/RandomizedLinearAlgebra/RandomizedLinearAlgebra.pyeditTransportMaps/Functionals/FunctionBase.pyeditTransportMaps/Maps/MapBase.pyExamples/research/EIT/NoElectrode/postprocess-plotting.pyExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.pyExamples/research/EIT/NoElectrode/test_distribution.pyTransportMaps/RandomizedLinearAlgebra/RandomizedLinearAlgebra.py74481fdf5bf78e43f94ffdb53e323f6ef6db52771520569175000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on laplace approximation of EIT 2018-03-08 23:19:35 -050074481fdf5bf78e43f94ffdb53e323f6ef6db5277working on laplace approximation of EITaddExamples/research/EIT/NoElectrode/postprocess-plotting.pyeditExamples/research/EIT/NoElectrode/test_distribution.pyeditTransportMaps/RandomizedLinearAlgebra/RandomizedLinearAlgebra.pyeditExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.pyExamples/research/EIT/NoElectrode/Adjoint-test-field.pyExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.pyExamples/research/EIT/NoElectrode/GaussianFieldDataGeneration.pyExamples/research/EIT/NoElectrode/test_distribution.py1d7f4fd1dcdfa9a8109e98faf16148f1011e39661520703503000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itdebugging action of Hessian 2018-03-10 12:38:23 -05001d7f4fd1dcdfa9a8109e98faf16148f1011e3966debugging action of HessianeditExamples/research/EIT/NoElectrode/GaussianFieldDataGeneration.pyeditExamples/research/EIT/NoElectrode/test_distribution.pyeditExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.pyeditExamples/research/EIT/NoElectrode/Adjoint-test-field.pyExamples/research/EIT/NoElectrode/Adjoint-test-field.pyExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.py1f0be00895048d30a9f612df6f63607c4e089c151520722239000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itchecking hessian action.. 2018-03-10 17:50:39 -05001f0be00895048d30a9f612df6f63607c4e089c15checking hessian action..editExamples/research/EIT/NoElectrode/Adjoint-test-field.pyeditExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.pyExamples/research/EIT/NoElectrode/Adjoint-test-field.pyExamples/research/EIT/NoElectrode/test_distribution.py26ecb870671fa3530590a938ffe58e5d2e4498701520879069000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on finite difference test for Hessian 2018-03-12 14:24:29 -040026ecb870671fa3530590a938ffe58e5d2e449870working on finite difference test for HessianeditExamples/research/EIT/NoElectrode/test_distribution.pyeditExamples/research/EIT/NoElectrode/Adjoint-test-field.pyExamples/research/EIT/NoElectrode/test_distribution.py45e4b45fed1914c006ed8c29a3e310d046bcc74d1520903292000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itchecking Hessian for distribution 2018-03-12 21:08:12 -040045e4b45fed1914c006ed8c29a3e310d046bcc74dchecking Hessian for distributioneditExamples/research/EIT/NoElectrode/test_distribution.pyExamples/research/EIT/NoElectrode/whiten.pyExamples/research/EIT/NoElectrode/test_distribution.pyTransportMaps/Maps/MapBase.py8754c010c04ef0d7e08c06bf13298a3dadc2ad7f1520984918000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itfixed withening script. Now action of Hessian works with MPI 2018-03-13 19:48:38 -04008754c010c04ef0d7e08c06bf13298a3dadc2ad7ffixed withening script. Now action of Hessian works with MPIeditExamples/research/EIT/NoElectrode/test_distribution.pyeditExamples/research/EIT/NoElectrode/whiten.pyeditTransportMaps/Maps/MapBase.pyTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyTransportMaps/Distributions/TransportMapDistributions.pyTransportMaps/RandomizedLinearAlgebra/RandomizedLinearAlgebra.pyExamples/research/EIT/NoElectrode/test_distribution.pyExamples/research/EIT/NoElectrode/GaussianFieldDataGeneration.pyTransportMaps/Maps/FullTransportMaps.pyscripts/tmap-tmExamples/research/EIT/NoElectrode/postprocess-plotting.pyExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.pyTransportMaps/Routines.pyTransportMaps/Likelihoods/LikelihoodBase.py53d914e64bd369afd1015624f84080f676ecfbfd1521086189000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on EIT adaptivity 2018-03-14 23:56:29 -040053d914e64bd369afd1015624f84080f676ecfbfdworking on EIT adaptivityeditTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyeditTransportMaps/Routines.pyeditTransportMaps/RandomizedLinearAlgebra/RandomizedLinearAlgebra.pyeditExamples/research/EIT/NoElectrode/postprocess-plotting.pyeditExamples/research/EIT/NoElectrode/test_distribution.pyeditTransportMaps/Distributions/TransportMapDistributions.pyeditTransportMaps/Likelihoods/LikelihoodBase.pyeditExamples/research/EIT/NoElectrode/GaussianFieldDataGeneration.pyeditTransportMaps/Maps/FullTransportMaps.pyeditscripts/tmap-tmeditExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.pyTransportMaps/tests/test_transportmaps.pyTransportMaps/FiniteDifference.pyTransportMaps/Maps/FullTransportMaps.pyscripts/tmap-tmf83a259c843b00c21037320af6cce6dd3f6337671521140149000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itadded missing functions to LinearTransportMap. Added unit tests for it 2018-03-15 14:55:49 -0400f83a259c843b00c21037320af6cce6dd3f633767added missing functions to LinearTransportMap. Added unit tests for iteditTransportMaps/tests/test_transportmaps.pyeditTransportMaps/FiniteDifference.pyeditTransportMaps/Maps/FullTransportMaps.pyeditscripts/tmap-tmExamples/research/EIT/NoElectrode/Adjoint-test-field.pyExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.pyb88e79f9296040875afbe97f9edd87c8f3ee8c4d1521179025000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itmodified caching of EIT solutions so that the cache is now pickable. 2018-03-16 01:43:45 -0400b88e79f9296040875afbe97f9edd87c8f3ee8c4dmodified caching of EIT solutions so that the cache is now pickable.editExamples/research/EIT/NoElectrode/Adjoint-test-field.pyeditExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.pyTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyTransportMaps/Maps/FullTransportMaps.pyscripts/tmap-tmTransportMaps/Routines.py24e6987e4d8e66a2bc7cf61afff3c611cf631bf81521211753000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itadded verbosity option in adaptivity algorithms and fixed bug in action of the Hessia of the kl divergence 2018-03-16 10:49:13 -040024e6987e4d8e66a2bc7cf61afff3c611cf631bf8added verbosity option in adaptivity algorithms and fixed bug in actioneditTransportMaps/Maps/FullTransportMaps.pyeditTransportMaps/Routines.pyeditscripts/tmap-tmeditTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyscripts/tmap-tmTransportMaps/Misc.pye453c7602953f95bd6a7b4d9c947fe205e8ca0af1521316012000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itadded intermediate storage capability for adaptivity 2018-03-17 15:46:52 -0400e453c7602953f95bd6a7b4d9c947fe205e8ca0afadded intermediate storage capability for adaptivityeditTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyeditTransportMaps/Misc.pyeditscripts/tmap-tmTransportMaps/Diagnostics/Validators.py341c70ae2bf51f3a9ad094b4597a2fedef0de58d1521317625000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itadded output for lower and upper bounds in saa 2018-03-17 16:13:45 -0400341c70ae2bf51f3a9ad094b4597a2fedef0de58dadded output for lower and upper bounds in saaeditTransportMaps/Diagnostics/Validators.pyscripts/tmap-tmExamples/research/EIT/NoElectrode/submit_slurm.shExamples/research/EIT/NoElectrode/test_distribution.pyf12418030af0de2a720a3573485d057e11694bf61521318113000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itfixed bug in tmap-tm and in test_distribution.py for EIT 2018-03-17 16:21:53 -0400f12418030af0de2a720a3573485d057e11694bf6fixed bug in tmap-tm and in test_distribution.py for EITeditExamples/research/EIT/NoElectrode/test_distribution.pyeditExamples/research/EIT/NoElectrode/submit_slurm.sheditscripts/tmap-tmTransportMaps/tests/TestFunctions.pyTransportMaps/Distributions/TransportMapDistributions.pyTransportMaps/Diagnostics/Validators.pyTransportMaps/Distributions/FrozenDistributions.pyTransportMaps/Distributions/DistributionBase.pyTransportMaps/Maps/TransportMapBase.pyTransportMaps/Functionals/MonotonicFunctionApproximations.pyTransportMaps/Maps/TriangularTransportMapBase.pyTransportMaps/Misc.pye4e346a2894a5f5ca16449ecf7c4c7b5c6567f381521423055000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itadded distributed sampling for MC sampling in minimize_kl_divergence functions for both forward and inverse maps. Unittests to be run 2018-03-18 21:30:55 -0400e4e346a2894a5f5ca16449ecf7c4c7b5c6567f38added distributed sampling for MC sampling in minimize_kl_divergenceeditTransportMaps/tests/TestFunctions.pyeditTransportMaps/Distributions/FrozenDistributions.pyeditTransportMaps/Maps/TransportMapBase.pyeditTransportMaps/Maps/TriangularTransportMapBase.pyeditTransportMaps/Distributions/DistributionBase.pyeditTransportMaps/Misc.pyeditTransportMaps/Diagnostics/Validators.pyeditTransportMaps/Functionals/MonotonicFunctionApproximations.pyeditTransportMaps/Distributions/TransportMapDistributions.pyTransportMaps/Functionals/MonotonicFunctionApproximations.pyTransportMaps/Maps/TriangularTransportMapBase.py289889ef7c6704ffdd96912d3682d0c6465d6aa81521424393000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itfixed sampling for inverse maps from samples (disabled distributed sampling there) 2018-03-18 21:53:13 -0400289889ef7c6704ffdd96912d3682d0c6465d6aa8fixed sampling for inverse maps from samples (disabled distributededitTransportMaps/Maps/TriangularTransportMapBase.pyeditTransportMaps/Functionals/MonotonicFunctionApproximations.pyTransportMaps/Maps/TriangularTransportMaps.py80d82d4e4fdf0ab31b3bb6ebba8e58f41e49bad91521425556000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itfixed distributed sampling for linear span kl minimization 2018-03-18 22:12:36 -040080d82d4e4fdf0ab31b3bb6ebba8e58f41e49bad9fixed distributed sampling for linear span kl minimizationeditTransportMaps/Maps/TriangularTransportMaps.pyTransportMaps/Maps/TransportMapBase.pyc53f8325864c09f7697a737c7711fa54b73f17021521474518000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itfixed action Hessian with regularization 2018-03-19 11:48:38 -0400c53f8325864c09f7697a737c7711fa54b73f1702fixed action Hessian with regularizationeditTransportMaps/Maps/TransportMapBase.pyTransportMaps/Maps/TransportMapBase.pyc9c0720174bda6718b183da874b9bdd4b7515a951521475248000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itsimplified regularization of action hessian regularization 2018-03-19 12:00:48 -0400c9c0720174bda6718b183da874b9bdd4b7515a95simplified regularization of action hessian regularizationeditTransportMaps/Maps/TransportMapBase.pyTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyTransportMaps/Diagnostics/Validators.pyTransportMaps/Maps/TransportMapBase.pyscripts/tmap-tm51c65479c1ab61273d427007e592680e5966424f1521507134000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itfixed relative tolerance in validator 2018-03-19 20:52:14 -040051c65479c1ab61273d427007e592680e5966424ffixed relative tolerance in validatoreditTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyeditTransportMaps/Maps/TransportMapBase.pyeditTransportMaps/Diagnostics/Validators.pyeditscripts/tmap-tmTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyTransportMaps/Diagnostics/Validators.pyacb65c3dca1f3790e3679df972ac065c9075f3c01521509615000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itfixed relative tolerance in validator 2018-03-19 21:33:35 -0400acb65c3dca1f3790e3679df972ac065c9075f3c0fixed relative tolerance in validatoreditTransportMaps/Diagnostics/Validators.pyeditTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.pyaf0dacbcb4fdf066cf9b2ab3c2d032d95f857f371521509684000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itremove unnecessary output form EIT 2018-03-19 21:34:44 -0400af0dacbcb4fdf066cf9b2ab3c2d032d95f857f37remove unnecessary output form EITeditExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.pyTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyTransportMaps/Misc.pyDocs/source/example-BOD-4d.ipynb1b593f49fd021a56a827e39993d1d5e720e0ddc21521745878000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itchanged active variable indicator to E[|x|] 2018-03-22 15:11:18 -04001b593f49fd021a56a827e39993d1d5e720e0ddc2changed active variable indicator to E[|x|]editDocs/source/example-BOD-4d.ipynbeditTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyeditTransportMaps/Misc.pyExamples/research/sparsity/data_samples/generate_npn_data.py58ba5a20cbc02d540f9e63973412fc4b254233ce1521838039000https://acdl.mit.edu/csi/user/rebeccae.morrisonrebeccae.morrisonrebeccae.morrison@gmail.comtryna generate non-gaussian data 2018-03-23 16:47:19 -040058ba5a20cbc02d540f9e63973412fc4b254233cetryna generate non-gaussian dataaddExamples/research/sparsity/data_samples/generate_npn_data.pyscripts/tmap-tmExamples/research/EIT/DirichletToNeumann/main.pya00fae250c9debe84b291d7cc2d20ad8ec45242f1521843383000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on reload feature for tmap-tm 2018-03-23 18:16:23 -0400a00fae250c9debe84b291d7cc2d20ad8ec45242fworking on reload feature for tmap-tmeditscripts/tmap-tmeditExamples/research/EIT/DirichletToNeumann/main.pyTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyscripts/tmap-tmTransportMaps/Maps/TriangularTransportMapBase.py22e8151dd8c569268ff8f7cd0c157429bf15bfd01521935041000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itreloading done for first variation adaptivity. to be checked in other kinds of algorithms callable by tmap-tm 2018-03-24 19:44:01 -040022e8151dd8c569268ff8f7cd0c157429bf15bfd0reloading done for first variation adaptivity. to be checked in othereditTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyeditscripts/tmap-tmeditTransportMaps/Maps/TriangularTransportMapBase.pyTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyExamples/research/EIT/NoElectrode/submit_slurm.shTransportMaps/Distributions/TransportMapDistributions.py04ade86415285c6f6251d6876a8bbfb9cb3f45511521938983000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itadded some output to First variation algorithm 2018-03-24 20:49:43 -040004ade86415285c6f6251d6876a8bbfb9cb3f4551added some output to First variation algorithmeditTransportMaps/Distributions/TransportMapDistributions.pyeditTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyeditExamples/research/EIT/NoElectrode/submit_slurm.shTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyDocs/source/example-sequential-stocvol-6d.ipynbscripts/tmap-tmTransportMaps/Maps/FullTransportMaps.pycb83b0a022b7efe2c0639e6a7eb88f7a31a3f16d1522016714000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itfixed restarting and grad_x for target in EIT 2018-03-25 18:25:14 -0400cb83b0a022b7efe2c0639e6a7eb88f7a31a3f16dfixed restarting and grad_x for target in EITeditscripts/tmap-tmeditTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyeditDocs/source/example-sequential-stocvol-6d.ipynbeditTransportMaps/Maps/FullTransportMaps.pyTransportMaps/tests/test_transportmaps.pyTransportMaps/Defaults.pyTransportMaps/Functionals/LinearSpanApproximationBase.pyTransportMaps/Functionals/ParametricFunctionApproximationBase.py8caf7e3722ed86b8d8a6191281e004fe9fe9c0241522028331000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itadded field full_basis_list to function approximations, to be used in adaptivity 2018-03-25 21:38:51 -04008caf7e3722ed86b8d8a6191281e004fe9fe9c024added field full_basis_list to function approximations, to be used ineditTransportMaps/tests/test_transportmaps.pyeditTransportMaps/Functionals/LinearSpanApproximationBase.pyeditTransportMaps/Functionals/ParametricFunctionApproximationBase.pyeditTransportMaps/Defaults.pyTransportMaps/Functionals/AlgebraicLinearSpanApproximations.pyTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py7951a0010b504cbeb123df42cf2355f4889481ad1522028538000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itfixed adaptivity accordingly to previous full_basis_list at the function approximation level instead of transport map level 2018-03-25 21:42:18 -04007951a0010b504cbeb123df42cf2355f4889481adfixed adaptivity accordingly to previous full_basis_list at the functioneditTransportMaps/Functionals/AlgebraicLinearSpanApproximations.pyeditTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyExamples/research/sparsity/algorithm/run_sing_copula.pyrequirements.txtTransportMaps/Distributions/TransportMapDistributions.pyExamples/research/sparsity/data_samples/generate_npn_data.pyTransportMaps/Samplers/MarkovChainSamplers.pyTransportMaps/Algorithms/SparsityIdentification/SparsityIdentificationNonGaussian.pyTransportMaps/Algorithms/SparsityIdentification/GeneralizedPrecision.pyExamples/research/sparsity/algorithm/run_sing_genes.pyExamples/research/sparsity/data_samples/copula_data/generate_npn_data.pyTransportMaps/Maps/TransportMapBase.pyTransportMaps/Functionals/ProductDistributionParametricPullbackComponentFunctionBase.pyExamples/research/sparsity/algorithm/run_sing_aerostruct.pybaa85fe3d505a0ab0fcc7731d1690df82d75a87f1522172420000https://acdl.mit.edu/csi/user/rebeccae.morrisonrebeccae.morrisonrebeccae.morrison@gmail.comrunning aerostruct and copula data 2018-03-27 13:40:20 -0400baa85fe3d505a0ab0fcc7731d1690df82d75a87frunning aerostruct and copula dataeditTransportMaps/Algorithms/SparsityIdentification/SparsityIdentificationNonGaussian.pyeditrequirements.txtaddExamples/research/sparsity/algorithm/run_sing_copula.pyeditTransportMaps/Distributions/TransportMapDistributions.pyeditExamples/research/sparsity/algorithm/run_sing_genes.pyeditTransportMaps/Maps/TransportMapBase.pydeleteExamples/research/sparsity/data_samples/generate_npn_data.pyeditTransportMaps/Algorithms/SparsityIdentification/GeneralizedPrecision.pyeditTransportMaps/Samplers/MarkovChainSamplers.pyaddExamples/research/sparsity/algorithm/run_sing_aerostruct.pyaddExamples/research/sparsity/data_samples/copula_data/generate_npn_data.pyeditTransportMaps/Functionals/ProductDistributionParametricPullbackComponentFunctionBase.pyExamples/research/sparsity/data_samples/copula_data/cdf_omega.txtExamples/research/sparsity/data_samples/copula_data/power_omega-s-p75.txtExamples/research/sparsity/data_samples/copula_data/power_omega.txtExamples/research/sparsity/data_samples/copula_data/power_data-s-p1.txtExamples/research/sparsity/data_samples/copula_data/power_data-s-p75.txtExamples/research/sparsity/data_samples/copula_data/power_data-s-p5.txtExamples/research/sparsity/data_samples/copula_data/power_data-s-1.txtExamples/research/sparsity/data_samples/copula_data/power_data-s-3.txtExamples/research/sparsity/data_samples/copula_data/power_omega-s-3.txtExamples/research/sparsity/data_samples/copula_data/power_data.txtExamples/research/sparsity/data_samples/copula_data/power_omega-s-p5.txtExamples/research/sparsity/data_samples/copula_data/cdf_data.txtExamples/research/sparsity/data_samples/copula_data/power_omega-s-p1.txtExamples/research/sparsity/data_samples/copula_data/power_omega-s-1.txtb03706acae886fb5850035a625ade5d66d39a4a31522242544000https://acdl.mit.edu/csi/user/rebeccae.morrisonrebeccae.morrisonrebeccae.morrison@gmail.comcommitting data samples for copula data 2018-03-28 09:09:04 -0400b03706acae886fb5850035a625ade5d66d39a4a3committing data samples for copula dataaddExamples/research/sparsity/data_samples/copula_data/power_omega-s-p75.txtaddExamples/research/sparsity/data_samples/copula_data/cdf_data.txtaddExamples/research/sparsity/data_samples/copula_data/power_data-s-p5.txtaddExamples/research/sparsity/data_samples/copula_data/power_omega-s-1.txtaddExamples/research/sparsity/data_samples/copula_data/power_data-s-3.txtaddExamples/research/sparsity/data_samples/copula_data/power_data-s-1.txtaddExamples/research/sparsity/data_samples/copula_data/power_data-s-p75.txtaddExamples/research/sparsity/data_samples/copula_data/power_omega-s-3.txtaddExamples/research/sparsity/data_samples/copula_data/power_omega-s-p1.txtaddExamples/research/sparsity/data_samples/copula_data/power_omega-s-p5.txtaddExamples/research/sparsity/data_samples/copula_data/power_data-s-p1.txtaddExamples/research/sparsity/data_samples/copula_data/power_omega.txtaddExamples/research/sparsity/data_samples/copula_data/power_data.txtaddExamples/research/sparsity/data_samples/copula_data/cdf_omega.txtTransportMaps/Routines.pyExamples/research/EIT/NoElectrode/submit_slurm.shec67156ee16802b789f3f98718b3d9bbbac1ec011522243025000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itfixed first variation computation 2018-03-28 09:17:05 -0400ec67156ee16802b789f3f98718b3d9bbbac1ec01fixed first variation computationeditTransportMaps/Routines.pyeditExamples/research/EIT/NoElectrode/submit_slurm.shExamples/research/EIT/NoElectrode/postprocess-plotting.py05b11756355f3a43f4870b89f38cdf98788063a61522244212000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itadded plot sample for post process in EIT 2018-03-28 09:36:52 -040005b11756355f3a43f4870b89f38cdf98788063a6added plot sample for post process in EITeditExamples/research/EIT/NoElectrode/postprocess-plotting.pyExamples/research/sparsity/algorithm/run_sing_xstar.py12fb2028f39abc7b50a27bc40c2ab6a80de2cc4c1522246166000https://acdl.mit.edu/csi/user/rebeccae.morrisonrebeccae.morrisonrebeccae.morrison@gmail.comadded a non-gaussian chain dataset 2018-03-28 10:09:26 -040012fb2028f39abc7b50a27bc40c2ab6a80de2cc4cadded a non-gaussian chain datasetaddExamples/research/sparsity/algorithm/run_sing_xstar.pyTransportMaps/Functionals/LinearSpanApproximationBase.pyTransportMaps/XML/schema/map.xsdTransportMaps/Functionals/ParametricFunctionApproximationBase.pyTransportMaps/tests/xml/maps/TotalOrdIntExpDiagonalMap_5d.xmlTransportMaps/Functionals/MonotonicFunctionApproximations.pyTransportMaps/Maps/TriangularTransportMapBase.py8eb49dc9068ebe02ba37f50f68e4801f29fff4131522268328000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itadded full_basis_list feature to xml map structure loading 2018-03-28 16:18:48 -04008eb49dc9068ebe02ba37f50f68e4801f29fff413added full_basis_list feature to xml map structure loadingeditTransportMaps/XML/schema/map.xsdeditTransportMaps/Functionals/LinearSpanApproximationBase.pyeditTransportMaps/tests/xml/maps/TotalOrdIntExpDiagonalMap_5d.xmleditTransportMaps/Functionals/MonotonicFunctionApproximations.pyeditTransportMaps/Functionals/ParametricFunctionApproximationBase.pyeditTransportMaps/Maps/TriangularTransportMapBase.pyTransportMaps/Functionals/LinearSpanApproximationBase.py63affa5a3a3791b50cb0325ef21e2a38446f4dfe1522269616000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itfixed full_basis_list to save in memory allocation 2018-03-28 16:40:16 -040063affa5a3a3791b50cb0325ef21e2a38446f4dfefixed full_basis_list to save in memory allocationeditTransportMaps/Functionals/LinearSpanApproximationBase.pyExamples/research/sparsity/algorithm/run_sing_xstar.pyExamples/research/sparsity/algorithm/run_sing_copula.pyExamples/research/sparsity/algorithm/run_sing_aerostruct.py77519092cd90b711caaea37e1e2d179bea767cd81522336187000https://acdl.mit.edu/csi/user/rebeccae.morrisonrebeccae.morrisonrebeccae.morrison@gmail.comminor testing datasets changes 2018-03-29 11:09:47 -040077519092cd90b711caaea37e1e2d179bea767cd8minor testing datasets changeseditExamples/research/sparsity/algorithm/run_sing_xstar.pyeditExamples/research/sparsity/algorithm/run_sing_aerostruct.pyeditExamples/research/sparsity/algorithm/run_sing_copula.pyTransportMaps/Maps/MapBase.py033810aaa1216b69df5f3b16b5d555528e20591a1522339353000https://acdl.mit.edu/csi/user/rebeccae.morrisonrebeccae.morrisonrebeccae.morrison@gmail.comcheck for product distribution 2018-03-29 12:02:33 -0400033810aaa1216b69df5f3b16b5d555528e20591acheck for product distributioneditTransportMaps/Maps/MapBase.pyExamples/research/sparsity/algorithm/run_sing_xstar.pyExamples/research/sparsity/algorithm/run_sing_aerostruct.pyTransportMaps/Algorithms/SparsityIdentification/SparsityIdentificationNonGaussian.pya05f61e18bbb141f5ffb4287bb5bc6d0f98296a91522434612000https://acdl.mit.edu/csi/user/rebeccae.morrisonrebeccae.morrisonrebeccae.morrison@gmail.comremoved matplotlib from imports 2018-03-30 14:30:12 -0400a05f61e18bbb141f5ffb4287bb5bc6d0f98296a9removed matplotlib from importseditExamples/research/sparsity/algorithm/run_sing_xstar.pyeditExamples/research/sparsity/algorithm/run_sing_aerostruct.pyeditTransportMaps/Algorithms/SparsityIdentification/SparsityIdentificationNonGaussian.pysetup.pyTransportMaps/Algorithms/SparsityIdentification/NodeOrdering.pyrequirements.txt6e5bf8e41cb1ccd844b863ff56804d3879e5e7231522435226000https://acdl.mit.edu/csi/user/rebeccae.morrisonrebeccae.morrisonrebeccae.morrison@gmail.comscikit-sparse reqs 2018-03-30 14:40:26 -04006e5bf8e41cb1ccd844b863ff56804d3879e5e723scikit-sparse reqseditrequirements.txteditsetup.pyeditTransportMaps/Algorithms/SparsityIdentification/NodeOrdering.pysetup.pyrequirements-SPHINX.txtdafebe47bd681f2a31fd7ffc7d04c572a3b21e631522437557000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itchanged googleanalytics requirements 2018-03-30 15:19:17 -0400dafebe47bd681f2a31fd7ffc7d04c572a3b21e63changed googleanalytics requirementseditrequirements-SPHINX.txteditsetup.pyrequirements.txtTransportMaps/Functionals/ProductDistributionParametricPullbackComponentFunctionBase.pyDocs/source/examples-inverse-sparsity-identification.ipynbTransportMaps/Maps/MapBase.py3f120615511a6ed7bb556b307db17e3a2771f91d1522442453000https://acdl.mit.edu/csi/user/rebeccae.morrisonrebeccae.morrisonrebeccae.morrison@gmail.comstarting jupyter notebook for sing 2018-03-30 16:40:53 -04003f120615511a6ed7bb556b307db17e3a2771f91dstarting jupyter notebook for singaddDocs/source/examples-inverse-sparsity-identification.ipynbeditTransportMaps/Functionals/ProductDistributionParametricPullbackComponentFunctionBase.pyeditrequirements.txteditTransportMaps/Maps/MapBase.pyExamples/research/sparsity/algorithm/run_sing_copula.py5ab17793c875fc4776c527b830a388639531ecf61522759446000https://acdl.mit.edu/csi/user/rebeccae.morrisonrebeccae.morrisonrebeccae.morrison@gmail.comlooking at copula data inverse covariance 2018-04-03 08:44:06 -04005ab17793c875fc4776c527b830a388639531ecf6looking at copula data inverse covarianceeditExamples/research/sparsity/algorithm/run_sing_copula.pyscripts/tmap-max-likelihoodExamples/research/EIT/NoElectrode/test_distribution.pyTransportMaps/RandomizedLinearAlgebra/RandomizedLinearAlgebra.pyExamples/research/EIT/NoElectrode/GaussianFieldDataGeneration.pyscripts/tmap-load-dill78edbff3371b63fe9ee9b6f98d28a552791d68ae1522782739000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itworking on coarser test case 2018-04-03 15:12:19 -040078edbff3371b63fe9ee9b6f98d28a552791d68aeworking on coarser test caseeditExamples/research/EIT/NoElectrode/test_distribution.pyeditTransportMaps/RandomizedLinearAlgebra/RandomizedLinearAlgebra.pyeditscripts/tmap-max-likelihoodeditExamples/research/EIT/NoElectrode/GaussianFieldDataGeneration.pyaddscripts/tmap-load-dillTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyTransportMaps/Functionals/AlgebraicLinearSpanApproximations.pyTransportMaps/tests/test_kl_divergence.pysetup.pyTransportMaps/FiniteDifference.pyTransportMaps/Diagnostics/Validators.py1f069c63c808bf1bd5027753a1c0f25e8765ae6e1522801861000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itfixed several bugs in adaptivity and tests 2018-04-03 20:31:01 -04001f069c63c808bf1bd5027753a1c0f25e8765ae6efixed several bugs in adaptivity and testseditTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyeditsetup.pyeditTransportMaps/Diagnostics/Validators.pyeditTransportMaps/FiniteDifference.pyeditTransportMaps/Functionals/AlgebraicLinearSpanApproximations.pyeditTransportMaps/tests/test_kl_divergence.pyTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py179a9487918b6c8b2be032406101181c580726cb1522803877000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itfixed get state in first variation builder 2018-04-03 21:04:37 -0400179a9487918b6c8b2be032406101181c580726cbfixed get state in first variation buildereditTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyscripts/tmap-tmTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyscripts/tmap-load-dill9d127c69f3f4dcb6f1d99130cb2f251a20aa3a101522803925000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itadded line search options in tmap-tm 2018-04-03 21:05:25 -04009d127c69f3f4dcb6f1d99130cb2f251a20aa3a10added line search options in tmap-tmeditscripts/tmap-tmeditTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyeditscripts/tmap-load-dillTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyTransportMaps/Functionals/ParametricFunctionApproximationBase.pyfc26a7e58d9a31197572741c452723fe89f103ef1522956579000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itfixed kladaptivity serialization and regression regularization 2018-04-05 15:29:39 -0400fc26a7e58d9a31197572741c452723fe89f103effixed kladaptivity serialization and regression regularizationeditTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyeditTransportMaps/Functionals/ParametricFunctionApproximationBase.pyTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py6c0db991f1d196642b9d28773c851de32da28dbf1522956618000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itfixed gx_gt_kl batched evaluation 2018-04-05 15:30:18 -04006c0db991f1d196642b9d28773c851de32da28dbffixed gx_gt_kl batched evaluationeditTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pysetup.pyDocs/source/examples-inverse-sparsity-identification.ipynbTransportMaps/Algorithms/SparsityIdentification/RegularizedMap.pyrequirements-SPHINX.txtTransportMaps/Algorithms/SparsityIdentification/SparsityIdentificationNonGaussian.pyd4e4a188b05bef4d0f367eecba453f36759c481c1523049680000https://acdl.mit.edu/csi/user/rebeccae.morrisonrebeccae.morrisonrebeccae.morrison@gmail.comadded sing notebook example 2018-04-06 17:21:20 -0400d4e4a188b05bef4d0f367eecba453f36759c481cadded sing notebook exampleeditrequirements-SPHINX.txteditDocs/source/examples-inverse-sparsity-identification.ipynbeditTransportMaps/Algorithms/SparsityIdentification/RegularizedMap.pyeditsetup.pyeditTransportMaps/Algorithms/SparsityIdentification/SparsityIdentificationNonGaussian.pyTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyTransportMaps/Functionals/LinearSpanApproximationBase.pyTransportMaps/Diagnostics/Validators.pyscripts/tmap-tmTransportMaps/Algorithms/SequentialInference/NonLinearSequentialInference.pyTransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.pyTransportMaps/Maps/TransportMapBase.pyTransportMaps/Maps/TriangularTransportMapBase.pyTransportMaps/Distributions/Examples/StochasticVolatility/StocVolHyperDistributions.py43f45c82f42b30fb61f83582e5e7a19fbc7d381b1523075369000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itfixing adaptivity here and there.. 2018-04-07 00:29:29 -040043f45c82f42b30fb61f83582e5e7a19fbc7d381bfixing adaptivity here and there..editTransportMaps/Maps/TransportMapBase.pyeditTransportMaps/Maps/TriangularTransportMapBase.pyeditTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyeditTransportMaps/Functionals/LinearSpanApproximationBase.pyeditTransportMaps/Algorithms/SequentialInference/NonLinearSequentialInference.pyeditTransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.pyeditTransportMaps/Distributions/Examples/StochasticVolatility/StocVolHyperDistributions.pyeditscripts/tmap-tmeditTransportMaps/Diagnostics/Validators.pyDocs/source/examples-transport-from-samples.rstDocs/source/example-inverse-sparsity-identification.ipynbDocs/source/refs.bibDocs/source/examples-inverse-sparsity-identification.ipynbrequirements-SPHINX.txt0145b9788f5bafabb3f0d27a062d78fb4c2d77431523154844000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itintegrated documentation for SING algorithm 2018-04-07 22:34:04 -04000145b9788f5bafabb3f0d27a062d78fb4c2d7743integrated documentation for SING algorithmeditDocs/source/refs.bibdeleteDocs/source/examples-inverse-sparsity-identification.ipynbeditrequirements-SPHINX.txtaddDocs/source/example-inverse-sparsity-identification.ipynbeditDocs/source/examples-transport-from-samples.rstTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyscripts/tmap-adaptivity-postprocessTransportMaps/Diagnostics/Validators.pyscripts/tmap-tmExamples/research/EIT/NoElectrode/postprocess-plotting.pysetup.pyTransportMaps/CLI/PostprocessBase.pyTransportMaps/CLI/__init__.pyTransportMaps/CLI/AdaptivityPostprocessBase.pyExamples/research/EIT/NoElectrode/GaussianFieldDataGeneration.pyExamples/research/EIT/NoElectrode/test_distribution.pyTransportMaps/Algorithms/SequentialInference/NonLinearSequentialInference.pyExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.pyscripts/tmap-sequential-tmc78ed287354896cb4e99bf84aff597937b4652ff1523244688000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itadded postprocessing functionalities for adaptivity 2018-04-08 23:31:28 -0400c78ed287354896cb4e99bf84aff597937b4652ffadded postprocessing functionalities for adaptivityeditExamples/research/EIT/NoElectrode/GaussianFieldDataGeneration.pyeditExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.pyeditExamples/research/EIT/NoElectrode/test_distribution.pyeditTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyeditsetup.pyeditTransportMaps/CLI/PostprocessBase.pyeditTransportMaps/Diagnostics/Validators.pyeditExamples/research/EIT/NoElectrode/postprocess-plotting.pyaddscripts/tmap-adaptivity-postprocesseditscripts/tmap-tmeditTransportMaps/Algorithms/SequentialInference/NonLinearSequentialInference.pyeditscripts/tmap-sequential-tmeditTransportMaps/CLI/__init__.pyaddTransportMaps/CLI/AdaptivityPostprocessBase.pyExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.pyExamples/research/EIT/NoElectrode/GaussianFieldDataGeneration.pyscripts/tmap-tmscripts/tmap-load-dillscripts/tmap-laplace105380bd5a6b6f35005a3fabeb7bde6198f539701523458227000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itadded double circle phantom 2018-04-11 10:50:27 -0400105380bd5a6b6f35005a3fabeb7bde6198f53970added double circle phantomeditExamples/research/EIT/NoElectrode/GaussianFieldDataGeneration.pyeditscripts/tmap-load-dilleditExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.pyeditscripts/tmap-laplaceeditscripts/tmap-tmscripts/tmap-tm6ec00985fbf262639d1412234f0241344fb5551a1523476709000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itfixed store function in tmap-tm 2018-04-11 15:58:29 -04006ec00985fbf262639d1412234f0241344fb5551afixed store function in tmap-tmeditscripts/tmap-tmTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyExamples/research/EIT/NoElectrode/test_distribution.py5cd5a8f7fc0392c4c6570182bc5c20ba7aa17eba1523591778000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itadded argument for line search delta 2018-04-12 23:56:18 -04005cd5a8f7fc0392c4c6570182bc5c20ba7aa17ebaadded argument for line search deltaeditTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyeditExamples/research/EIT/NoElectrode/test_distribution.pyscripts/tmap-tmExamples/research/EIT/NoElectrode/test_distribution.pydff441ce07e6cc88c02c923c9334b49cd8cdc2431523633360000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itadded delta parameter for line search 2018-04-13 11:29:20 -0400dff441ce07e6cc88c02c923c9334b49cd8cdc243added delta parameter for line searcheditscripts/tmap-tmeditExamples/research/EIT/NoElectrode/test_distribution.pyTransportMaps/Algorithms/SparsityIdentification/SparsityIdentificationNonGaussian.py5e7c0b2ce62e3a5b380aa07b7160de6eb91293e21523646451000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itfixed documentation SING 2018-04-13 15:07:31 -04005e7c0b2ce62e3a5b380aa07b7160de6eb91293e2fixed documentation SINGeditTransportMaps/Algorithms/SparsityIdentification/SparsityIdentificationNonGaussian.pyTransportMaps/tests/test_distributions.pyTransportMaps/tests/test_L2_misfit.pyTransportMaps/Algorithms/SequentialInference/NonLinearSequentialInference.pyTransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.pyTransportMaps/tests/test_sequential_inference.pyTransportMaps/tests/test_transportmap_distributions.pyTransportMaps/tests/test_functions.pyTransportMaps/tests/test_rla.pyce7a8f505fba4308e4e96e5e53f80ccf380eb2f41523652071000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itfixing unit tests; 2018-04-13 16:41:11 -0400ce7a8f505fba4308e4e96e5e53f80ccf380eb2f4fixing unit tests;editTransportMaps/tests/test_rla.pyeditTransportMaps/tests/test_distributions.pyeditTransportMaps/tests/test_functions.pyeditTransportMaps/tests/test_sequential_inference.pyeditTransportMaps/tests/test_transportmap_distributions.pyeditTransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.pyeditTransportMaps/tests/test_L2_misfit.pyeditTransportMaps/Algorithms/SequentialInference/NonLinearSequentialInference.pyTransportMaps/Routines.pybe863aa5bb7d71162c691e9bc54a7cf4d14e24941523653147000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itfixed laplace approximation starting point 2018-04-13 16:59:07 -0400be863aa5bb7d71162c691e9bc54a7cf4d14e2494fixed laplace approximation starting pointeditTransportMaps/Routines.pyExamples/research/EIT/NoElectrode/postprocess-plotting.pyTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyExamples/research/EIT/NoElectrode/test_distribution.pybae5c77867e94d388e37699707ac87a4833a5b761523653773000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itdocumenting fv adaptivity 2018-04-13 17:09:33 -0400bae5c77867e94d388e37699707ac87a4833a5b76documenting fv adaptivityeditExamples/research/EIT/NoElectrode/postprocess-plotting.pyeditTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.pyeditExamples/research/EIT/NoElectrode/test_distribution.pyTransportMaps/Diagnostics/Routines.pyTransportMaps/Densities/__init__.pyscripts/tmap-adaptivity-postprocessTransportMaps/RandomizedLinearAlgebra/RandomizedLinearAlgebra.pyExamples/research/adaptivity/FirstVariationAdaptivity-Postprocess.pyExamples/stable/CPP-Module/KLdivergence-InverseMap-InverseConstruction.pyExamples/research/LogGaussianCoxProcess/Postprocess-mean-std.pyTransportMaps/tests/test_all.pyTransportMaps/Maps/TransportMapBase.pyExamples/research/Helmholtz/FieldDataGeneration.pyTransportMaps/Distributions/Examples/BiochemicalOxigenDemand/BODDistributions.pyTransportMaps/Algorithms/SequentialInference/SequentialInferenceBase.pyTransportMaps/Likelihoods/__init__.pyTransportMaps/tests/test_distributions.pyExamples/old/SequentialInference/Laplace.pyTransportMaps/Algorithms/SequentialInference/__init__.pyTransportMaps/Maps/TriangularTransportMaps.pyTransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.pyExamples/research/adaptivity/KLdivergence_FirstVariationAdaptivity.pyExamples/research/banana/Banana.pyExamples/stable/StochasticVolatility/PlotExchanges.pyExamples/research/LogGaussianCoxProcess/LogGaussianCoxProcessDistributions.pyTransportMaps/Maps/Decomposable/__init__.pyDocs/conf3/conf.pyscripts/tmap-tmExamples/research/adaptivity/FirstVariationAdaptivity.pyExamples/old/SequentialInference/InverseMap-Postprocess.pyExamples/research/conditionedDiffusion/ConditionedDiffusion-Composition-Construction.pyTransportMaps/CLI/ScriptBase.pyExamples/research/EIT/NoElectrode/postprocess-plotting.pyExamples/old/SequentialInference/DirectMap-Composition-Adapted.pyTransportMaps/tests/test_laplace.pyscripts/tmap-postprocessTransportMaps/Likelihoods/LikelihoodBase.pyTransportMaps/tests/test_L2_minimization.pyExamples/old/StochasticVolatility/Postprocess.pyExamples/research/conditionedDiffusion/ConditionedDiffusion-Composition-Postprocess.pyTransportMaps/Functionals/ProductDistributionParametricPullbackComponentFunctionBase.pyTransportMaps/Distributions/Examples/RailwayVehicleDynamics/Coradia175/__init__.pyExamples/research/LogGaussianCoxProcess/DataGeneration.pyExamples/old/SequentialInference/TrimPlot.pyTransportMaps/Algorithms/SequentialInference/LinearSequentialInference.pyTransportMaps/tests/test_transportmap_distributions_sampling.pyTransportMaps/Distributions/Examples/RailwayVehicleDynamics/Coradia175/Coradia175VehicleParametersEstimation.pyTransportMaps/Maps/FullTransportMaps.pyTransportMaps/Maps/__init__.pyExamples/stable/TestDistributions/KLdivergence-InverseMap-DirectConstruction-ByStep.pyTransportMaps/ObjectBase.pyTransportMaps/Distributions/Examples/__init__.pyExamples/research/Helmholtz/test_distribution.pyTransportMaps/Routines.pyTransportMaps/Distributions/Decomposable/LinearGaussianSequentialInferenceDistributions.pyExamples/research/conditionedDiffusion/ConditionedDiffusion-DataGeneration.pyExamples/research/sparsity/monte_carlo_studies/SING_Convergence/SparsityIdentificationNonGaussian.pyTransportMaps/XML/Parser.pyTransportMaps/Samplers/SamplerBase.pyTransportMaps/Algorithms/__init__.pyExamples/old/SequentialInference/InverseMap-DirectConstruction.pyExamples/research/conditionedDiffusion/DataLoading.pyExamples/research/EIT/NoElectrode/test_distribution_mpi.pyTransportMaps/Functionals/LinearSpanApproximationBase.pyTransportMaps/Distributions/Examples/RailwayVehicleDynamics/Coradia175/Coradia175VehicleStateSpace.pyExamples/research/conditionedDiffusion/ConditionedDiffusion.pyTransportMaps/Algorithms/Adaptivity/__init__.pyDocs/conf2/conf.pyTransportMaps/Distributions/Examples/LogGaussianCoxProcess/__init__.pyExamples/stable/TestDistributions/KLdivergence-InverseMap-DirectConstruction.pyTransportMaps/RandomizedLinearAlgebra/__init__.pyExamples/stable/BODmodel/DataGeneration.pyscripts/tmap-load-dillTransportMaps/Samplers/Routines.pyTransportMaps/Densities/Inference/__init__.pyTransportMaps/CLI/AdaptivityPostprocessBase.pyTransportMaps/Maps/SimpleTransportMaps.pyTransportMaps/tests/TestFunctions.pyTransportMaps/Distributions/Examples/InertialNavigationSystem/__init__.pyTransportMaps/Densities/Decomposable/__init__.pyTransportMaps/Algorithms/SparsityIdentification/SparsityIdentificationNonGaussian.pyTransportMaps/Densities/Inference/InferenceBase.pyTransportMaps/Maps/FrozenTriangularTransportMaps.pyTransportMaps/Optimization/Optimizers.pyTransportMaps/Misc.pyTransportMaps/Distributions/Inference/InferenceBase.pyExamples/research/LogGaussianCoxProcess/Postprocess-unbiased-mean-std.pyTransportMaps/Algorithms/Adaptivity/AdaptivityBase.pyTransportMaps/Functionals/AlgebraicLinearSpanApproximations.pyTransportMaps/Distributions/Examples/SimpleDistributions.pyTransportMaps/Diagnostics/Validators.pyTransportMaps/Distributions/FrozenDistributions.pyTransportMaps/Maps/Decomposable/SequentialInference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variationeditTransportMaps/Maps/TriangularTransportMaps.pyeditTransportMaps/tests/test_kl_divergence.pyeditTransportMaps/tests/test_transportmap_distributions.pyeditTransportMaps/Routines.pyeditTransportMaps/Maps/TransportMapBase.pyTransportMaps/Functionals/MonotonicFunctionApproximations.py3be147da5ed2983e06e40a35f81fc2cfd418c6631525108759000https://acdl.mit.edu/csi/user/rsbrsbrsb@mit.edusubtract identity_coeffs + l1_reg to component kl 2018-04-30 13:19:19 -04003be147da5ed2983e06e40a35f81fc2cfd418c663subtract identity_coeffs + l1_reg to component kleditTransportMaps/Functionals/MonotonicFunctionApproximations.pyscripts/tmap-tmscripts/tmap-load-dillscripts/tmap-sequential-tm4e021585f86f253e30561afea05d8a292a724f251525110385000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itremoved dependency on FileNotFoundError for compatibility with py2 2018-04-30 13:46:25 -04004e021585f86f253e30561afea05d8a292a724f25removed dependency on FileNotFoundError for compatibility with 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scriptaddExamples/research/rsb-test/example1.pydeleteExamples/adaptivity/Postprocess.pydeleteExamples/rsb-test/example1.pyeditupdate-public-mirror.shDocs/source/index.rstDocs/source/algorithms.rstd5c0cc0f4790dbb508013816628ab7e8ca0c726a1525184078000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itadded algorithms documentation section 2018-05-01 10:14:38 -0400d5c0cc0f4790dbb508013816628ab7e8ca0c726aadded algorithms documentation sectioneditDocs/source/index.rstaddDocs/source/algorithms.rstupdate-public-mirror.sh46e44293747822bfb3425e2e495b26c5f30e40c31525268640000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itupdated script for public mirroring 2018-05-02 09:44:00 -040046e44293747822bfb3425e2e495b26c5f30e40c3updated script for public mirroringeditupdate-public-mirror.shTransportMaps/Functionals/MonotonicFunctionApproximations.py6dfc493b0462beb51c31bd4bca882b92ae27efd41528312509000https://acdl.mit.edu/csi/user/dabidabidabi@limitcycle.itthrowing an error if ders!=[0,1] used in decoupled LinearSpan min_kl problem 2018-06-06 15:15:09 -04006dfc493b0462beb51c31bd4bca882b92ae27efd4throwing an error if ders!=[0,1] used in decoupled LinearSpan 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