Changes

Summary

  1. example on Gumbel 1d (details)
  2. started with the Helmholtz equation (details)
  3. integrated SING into TransportMaps (details)
  4. cleaning SING files (details)
  5. l1 tests and plotting scripts (details)
  6. working on Helmholtz example from Ghattas' paper (details)
  7. working on Helmholtz (details)
  8. starting to work on actual probabilistic model (details)
  9. renaming some sun_sing files (details)
  10. updating run_sing files to run with SI.SING (details)
  11. actually updating to run with SI.SING (ignore last commit) (details)
  12. testing l1 (details)
  13. l1 regularization (details)
  14. Updated regularized map - SING now runs with 2 types of reg and no reg. (details)
  15. relaxed rademacher, butterfly distribution, and more properties of (details)
  16. relaxed rademacher uses uniform over (-1,1), not (0,1) (details)
  17. node ordering fix (details)
  18. changing parameters in Helmholtz (details)
  19. added stub solver for EIT problem (details)
  20. working on surface gradient (details)
  21. working on CEM (details)
  22. fixed EIT working on CEM (details)
  23. plotting scripts for nips (details)
  24. turned hessian off in sing (details)
  25. mc studies 1step algs (details)
  26. More MC Studies for SING (details)
  27. working on models (details)
  28. No electrodes model works (details)
  29. working on discretized model (details)
  30. working on discretized model (details)
  31. gmsh mesh generation for discretized test (details)
  32. working on complete model (details)
  33. starting to work on adjoint equations (details)
  34. messed up with no-electrodes model.. (details)
  35. working on fast sensor function (details)
  36. fixed sensor expression (details)
  37. working on Dirichlet to Neumann model (details)
  38. working on adjoint for no electrode model (details)
  39. adjoint done (details)
  40. gradient and Hessian working (details)
  41. setting up the posterior distribution (details)
  42. working on likelihood functions (details)
  43. working on posterior distribution (details)
  44. storage/loading of distribution works (details)
  45. working on action of Hessian (details)
  46. working on action_hess_a for transport map distributions (details)
  47. working on minimization of kl divergence using action of the Hessian (details)
  48. working on kl minimization tests (details)
  49. unit tests are passing. todo: caching in Likelihood to avoid extra (details)
  50. the distribution object is now pre-broadcasted to the children in (details)
  51. fixed test_kl_divergence (details)
  52. working on caching of Likelihood evaluations (details)
  53. fixed init function (details)
  54. The action of the Hessian is ready. Fixes #31. Caching issues reserved (details)
  55. introducing cached and counted decorators (details)
  56. adding counting output (details)
  57. caching to be finished in TransportMaps and Maps in general. Then I need (details)
  58. still working on maps... (details)
  59. working on distributions (details)
  60. testing caching. todo: caching in optimization problems (details)
  61. added caching and counting wherever needed (maybe missing some spots). (details)
  62. working on caching in Hessian. Todo: update and run unittests (details)
  63. adding reset counters functionalities (details)
  64. counting and resetting works. Caching also seems to work. TODO: (details)
  65. caching does what is supposed to do! (details)
  66. added manual test for caching and counting (details)
  67. working on caching minimization routine (details)
  68. working on unit tests for kl-divergence (details)
  69. working on test_kl_divergence.py (details)
  70. fixing  an error at a time... (details)
  71. kl_min tests work! (details)
  72. fixing all unit tests (details)
  73. porting MPI implementation to mpi_map v2.0 (details)
  74. porting to mpi_map v2.0 completed. ToBeTested!! (details)
  75. mpi_map v2 integrated and passing unit tests (details)
  76. gathering of ncalls and nevals count at the end of optimization done (details)
  77. passes unit tests (details)
  78. now pointing to MPI_Pool_v2 in mpi_map v2.0 (details)
  79. returning latest cache within log dictionary (details)
  80. fixed py2/py3 issue with cached decorator (details)
  81. fixed py2/py3 issue with cached decorator (details)
  82. fixed py2/py3 issue with cached decorator (details)
  83. fixing py2/py3 handling of *args and **kwargs (PEP3102) (details)
  84. working on target distribution (details)
  85. working on mpi evaluation of target density (details)
  86. working on constant field data generation and parallel implementation (details)
  87. working on speeding up function and gradient evaluatiions (details)
  88. implemented fungrad (details)
  89. working of action of Hessian (details)
  90. mpi implementation not working... (details)
  91. staring solving simple problems.. (details)
  92. working on constant field problem and parallelization (details)
  93. working on the problem set up (details)
  94. data generation for constant field works (details)
  95. working on adjoint for field (details)
  96. fixed gradient! (details)
  97. working on Hessian of EIT problem (details)
  98. working on hessian (details)
  99. fixed counter reset in some classes (details)
  100. fixing regularization (details)
  101. fixed caching for tuple_grad_a (details)
  102. fixed some issues with tests and new counting decorators (details)
  103. action of the Hessian for EIT works. To be integrated in distribution (details)
  104. eit hessian works with caching of solution and adjoints (details)
  105. EIT field distribution works with MPI (details)
  106. added possibility to add real fields by expression (details)
  107. disabled plotting if not available (details)
  108. distributions work on cluster (details)
  109. made EIT solver into a class (details)
  110. working on validators (details)
  111. working on saa (details)
  112. implementing gradient based validators (details)
  113. validators... (details)
  114. working on adaptivity algorithm (details)
  115. working on the adaptivity algorithm (details)
  116. adding adaptivity options to tmap-tm (details)
  117. working on launching script tmap-tm (details)
  118. changing builder classes to imbed parameters and take distributions on (details)
  119. going through banana example (details)
  120. working on adaptivity on banana (details)
  121. adaptivity on banana almost work (details)
  122. adaptivity works on banana. a lot to do yet... (details)
  123. improving parallelization (details)
  124. splitted first variation computation for better parallelization (details)
  125. adaptivity works on banana without hyper (details)
  126. working on low-rank approximation of Hessians (details)
  127. working on laplace approximation for Bayesian inverse problems, where (details)
  128. working on low-rank approximation of covariance in bayesian problem (details)
  129. working on low-rank approximation (details)
  130. added logging information in postprocessing script (details)
  131. low-rank Laplace approximation works (details)
  132. applying Laplace to EIT (details)
  133. working on composition of Likelihood with maps (details)
  134. working on composition of Likelihood with maps (details)
  135. composition of functions and map now is possible. working on laplace of (details)
  136. working on laplace approximation of EIT (details)
  137. debugging action of Hessian (details)
  138. checking hessian action.. (details)
  139. working on finite difference test for Hessian (details)
  140. checking Hessian for distribution (details)
  141. fixed withening script. Now action of Hessian works with MPI (details)
  142. working on EIT adaptivity (details)
  143. added missing functions to LinearTransportMap. Added unit tests for it (details)
  144. modified caching of EIT solutions so that the cache is now pickable. (details)
  145. added verbosity option in adaptivity algorithms and fixed bug in action (details)
  146. added intermediate storage capability for adaptivity (details)
  147. added output for lower and upper bounds in saa (details)
  148. fixed bug in tmap-tm and in test_distribution.py for EIT (details)
  149. added distributed sampling for MC sampling in minimize_kl_divergence (details)
  150. fixed sampling for inverse maps from samples (disabled distributed (details)
  151. fixed distributed sampling for linear span kl minimization (details)
  152. fixed action Hessian with regularization (details)
  153. simplified regularization of action hessian regularization (details)
  154. fixed relative tolerance in validator (details)
  155. fixed relative tolerance in validator (details)
  156. remove unnecessary output form EIT (details)
  157. changed active variable indicator to E[|x|] (details)
  158. tryna generate non-gaussian data (details)
  159. working on reload feature for tmap-tm (details)
  160. reloading done for first variation adaptivity. to be checked in other (details)
  161. added some output to First variation algorithm (details)
  162. fixed restarting and grad_x for target in EIT (details)
  163. added field full_basis_list to function approximations, to be used in (details)
  164. fixed adaptivity accordingly to previous full_basis_list at the function (details)
  165. running aerostruct and copula data (details)
  166. committing data samples for copula data (details)
  167. fixed first variation computation (details)
  168. added plot sample for post process in EIT (details)
  169. added a non-gaussian chain dataset (details)
  170. added full_basis_list feature to xml map structure loading (details)
  171. fixed full_basis_list to save in memory allocation (details)
  172. minor testing datasets changes (details)
  173. check for product distribution (details)
  174. removed matplotlib from imports (details)
  175. scikit-sparse reqs (details)
  176. changed googleanalytics requirements (details)
  177. starting jupyter notebook for sing (details)
  178. looking at copula data inverse covariance (details)
  179. working on coarser test case (details)
  180. fixed several bugs in adaptivity and tests (details)
  181. fixed get state in first variation builder (details)
  182. added line search options in tmap-tm (details)
  183. fixed kladaptivity serialization and regression regularization (details)
  184. fixed gx_gt_kl batched evaluation (details)
  185. added sing notebook example (details)
  186. fixing adaptivity here and there.. (details)
  187. integrated documentation for SING algorithm (details)
  188. added postprocessing functionalities for adaptivity (details)
  189. added double circle phantom (details)
  190. fixed store function in tmap-tm (details)
  191. added argument for line search delta (details)
  192. added delta parameter for line search (details)
  193. fixed documentation SING (details)
  194. fixing unit tests; (details)
  195. fixed laplace approximation starting point (details)
  196. documenting fv adaptivity (details)
  197. preparing release v2.0b0 (details)
  198. v2.0b0: ready for unit-testing (details)
  199. fixed matplotlib dependence (details)
  200. fixed process_time PyV3 PyV2 (details)
  201. fixed processtime name (details)
  202. fixing bugs for release (details)
  203. working to fix grax_gradt_kl (details)
  204. fixed grad_x of first variation (details)
  205. subtract identity_coeffs + l1_reg to component kl (details)
  206. removed dependency on FileNotFoundError for compatibility with py2 (details)
  207. fixed compatibility issue with py2 (details)
  208. removed unnecessary folders in Examples and updated mirroring script (details)
  209. added algorithms documentation section (details)
  210. updated script for public mirroring (details)
  211. throwing an error if ders!=[0,1] used in decoupled LinearSpan min_kl (details)
Commit a3e42dcee33ac89811e0c423284e2eacf617c52b by rsb
example on Gumbel 1d
The file was addedExamples/rsb-test/example1.py
Commit a8501e5fde9a04797928ea64eec734a3492ecbe8 by dabi
started with the Helmholtz equation
The file was addedExamples/research/Helmholtz/Solver.py
Commit 9297713e7be317f4bb4f7b2ee55649e1adede8e3 by rebeccae.morrison
integrated SING into TransportMaps
The file was modified.gitignore (diff)
The file was modifiedTransportMaps/Distributions/DistributionBase.py (diff)
The file was modifiedExamples/research/sparsity/algorithm/run_sing_stochvol.py (diff)
The file was modifiedTransportMaps/Algorithms/__init__.py (diff)
The file was modifiedExamples/research/sparsity/functions/ExtraDensities.py (diff)
The file was modifiedTransportMaps/Distributions/FrozenDistributions.py (diff)
The file was modifiedTransportMaps/Maps/TransportMapBase.py (diff)
The file was removedExamples/research/sparsity/algorithm/Algorithm.py
The file was removedExamples/research/sparsity/post_processing/pp_alg_errors-cse.py
The file was addedExamples/research/sparsity/algorithm/Algorithm.py.old
The file was removedExamples/research/sparsity/functions/NodeOrdering.py
The file was modifiedExamples/research/sparsity/graphs/GaussianGraphs.py (diff)
The file was addedTransportMaps/Algorithms/SparsityIdentification/__init__.py
The file was modifiedExamples/research/sparsity/algorithm/run_stoch_vol.py (diff)
The file was addedExamples/research/sparsity/functions/NodeOrdering.py.old
The file was addedTransportMaps/Algorithms/SparsityIdentification/NodeOrdering.py
The file was addedTransportMaps/Algorithms/SparsityIdentification/SparsityIdentificationNonGaussian.py
The file was addedTransportMaps/Algorithms/SparsityIdentification/GeneralizedPrecision.py
The file was modifiedTransportMaps/Algorithms/SparsityIdentification/GeneralizedPrecision.py (diff)
The file was modifiedTransportMaps/Algorithms/SparsityIdentification/SparsityIdentificationNonGaussian.py (diff)
The file was modifiedTransportMaps/Algorithms/SparsityIdentification/NodeOrdering.py (diff)
Commit b07e4c7631151dc9eff0b8551bd7aaa33b54dc64 by rebeccae.morrison
l1 tests and plotting scripts
The file was addedExamples/research/sparsity/monte_carlo_studies/success-prob-stochvol.py
The file was addedExamples/research/sparsity/tests/l1-params-vs-lambda.py
The file was addedExamples/research/sparsity/tests/test-l1vsnreg.py
The file was addedExamples/research/sparsity/algorithm/get_gp_stochvol.py
The file was addedExamples/research/sparsity/algorithm/test_sing.py
The file was addedExamples/research/sparsity/post_processing/successProbPlot.py
The file was addedExamples/research/sparsity/tests/l1-regpath.py
The file was modifiedExamples/research/sparsity/algorithm/run_sing_stochvol.py (diff)
The file was addedExamples/research/sparsity/post_processing/deltaPlot.py
Commit 5908b4bc1071606629590a876f3fb0c11f36df4c by dabi
working on Helmholtz example from Ghattas' paper
The file was addedExamples/research/Helmholtz/NeumannHelmholtz.py
The file was modifiedExamples/research/Helmholtz/Solver.py (diff)
Commit d15a48175a3e54c2bedb89bcd578625ee49f24ed by dabi
working on Helmholtz
The file was modifiedExamples/research/Helmholtz/NeumannHelmholtz.py (diff)
Commit 8b42e465aeb445dcfa742e09c2d45ea82e552bc8 by dabi
starting to work on actual probabilistic model
The file was modifiedExamples/research/Helmholtz/NeumannHelmholtz.py (diff)
The file was addedExamples/research/Helmholtz/HelmholtzModelDistributions.py
Commit f5315475aa6d8f3bd40d3a4cbb7b3cf7e4a6d908 by rebeccae.morrison
renaming some sun_sing files
The file was removedExamples/research/sparsity/algorithm/run_SING.py
The file was removedExamples/research/sparsity/algorithm/run_stoch_vol.py
The file was addedExamples/research/sparsity/algorithm/run_sing_satellite.py
The file was addedExamples/research/sparsity/algorithm/run_sing.py
The file was removedExamples/research/sparsity/algorithm/run_SING_satellite.py
Commit af5fff1d294b4dbba26252126b0ee2166460528f by rebeccae.morrison
updating run_sing files to run with SI.SING
The file was removedExamples/research/sparsity/algorithm/run_sing.py
Commit e44c5cb1442952afa8803e09ed7dde9790e83c82 by rebeccae.morrison
actually updating to run with SI.SING (ignore last commit)
The file was modifiedExamples/research/sparsity/algorithm/run_sing_stochvol.py (diff)
The file was modifiedExamples/research/sparsity/algorithm/run_sing_satellite.py (diff)
The file was modifiedExamples/research/sparsity/algorithm/test_sing.py (diff)
The file was modifiedExamples/research/sparsity/tests/test-l1vsnreg.py (diff)
The file was modifiedTransportMaps/Algorithms/SparsityIdentification/SparsityIdentificationNonGaussian.py (diff)
The file was addedExamples/research/sparsity/tests/test_sing.py
The file was modifiedExamples/research/sparsity/tests/l1-regpath.py (diff)
The file was removedExamples/research/sparsity/algorithm/test_sing.py
The file was removedExamples/research/sparsity/tests/test_algorithm.py
The file was modifiedTransportMaps/Algorithms/SparsityIdentification/SparsityIdentificationNonGaussian.py (diff)
The file was modifiedExamples/research/sparsity/tests/l1-regpath.py (diff)
The file was addedTransportMaps/Algorithms/SparsityIdentification/RegularizedMap.py
The file was modifiedTransportMaps/Maps/TransportMapBase.py (diff)
Commit 62050014501748e66e695a324b258b99ead7cf4b by rsb
Updated regularized map - SING now runs with 2 types of reg and no reg.
The file was modifiedTransportMaps/Algorithms/SparsityIdentification/SparsityIdentificationNonGaussian.py (diff)
The file was modifiedTransportMaps/Algorithms/SparsityIdentification/RegularizedMap.py (diff)
The file was modifiedTransportMaps/Algorithms/SparsityIdentification/GeneralizedPrecision.py (diff)
The file was modifiedTransportMaps/Algorithms/SparsityIdentification/NodeOrdering.py (diff)
Commit c5b6a53f0962b2a34a9e9ed086ced358d4063a03 by rebeccae.morrison
relaxed rademacher, butterfly distribution, and more properties of
gaussian graphs
The file was modifiedTransportMaps/Algorithms/SparsityIdentification/SparsityIdentificationNonGaussian.py (diff)
The file was modifiedTransportMaps/Distributions/FrozenDistributions.py (diff)
The file was modifiedExamples/research/sparsity/tests/test_sing.py (diff)
Commit 1d3d5286a3a3c944c4e9875e0a63ebfc6740530a by rebeccae.morrison
relaxed rademacher uses uniform over (-1,1), not (0,1)
The file was modifiedTransportMaps/Distributions/FrozenDistributions.py (diff)
The file was modifiedTransportMaps/Algorithms/SparsityIdentification/NodeOrdering.py (diff)
Commit 4007ad6708da92e57cab567a2656520637f9ba08 by dabi
changing parameters in Helmholtz
The file was modifiedExamples/research/Helmholtz/NeumannHelmholtz.py (diff)
Commit 9ec7cfd1065a7494c3ae22fa8849392426bf4bf0 by dabi
added stub solver for EIT problem
The file was addedExamples/research/EIT/solver.py
Commit e0796ce2ef9118f2a13a5de806c63c945d0f7b31 by dabi
working on surface gradient
The file was modifiedExamples/research/EIT/solver.py (diff)
The file was addedExamples/research/EIT/solverCEM.py
The file was removedExamples/research/EIT/solver.py
Commit 554cfb6e3b40351560e9b3cbaddb7c8712099a46 by dabi
fixed EIT working on CEM
The file was modifiedExamples/research/EIT/solverCEM.py (diff)
The file was modifiedExamples/research/sparsity/post_processing/pp_sparsity-cse.py (diff)
The file was modifiedExamples/research/sparsity/post_processing/color-matrix-satellite.py (diff)
The file was modifiedExamples/research/sparsity/post_processing/color-matrix-modrad.py (diff)
The file was modifiedTransportMaps/Algorithms/SparsityIdentification/SparsityIdentificationNonGaussian.py (diff)
The file was modifiedExamples/research/sparsity/algorithm/run_sing_stochvol.py (diff)
The file was modifiedExamples/research/sparsity/algorithm/run_sing_satellite.py (diff)
The file was modifiedExamples/research/sparsity/post_processing/color-matrix.py (diff)
Commit fb25f3aac184b0c2c055170e6aac5293aecf2700 by rebeccae.morrison
turned hessian off in sing
The file was modifiedTransportMaps/Algorithms/SparsityIdentification/SparsityIdentificationNonGaussian.py (diff)
Commit 5a611cb9d2d7d09ca619a613d1bcaf50d41002cc by rsb
mc studies 1step algs
The file was addedExamples/research/sparsity/monte_carlo_studies/MC_1StepAlgs/graph_test.py
The file was addedExamples/research/sparsity/monte_carlo_studies/MC_1StepAlgs/SparsityIdentificationNonGaussian.py
Commit 626030ca3a6917fc19fa219a8a888a1b73165f97 by rsb
More MC Studies for SING
The file was addedExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/mc_rademacher6dim.py
The file was addedExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/mc_regularization.py
The file was addedExamples/research/sparsity/monte_carlo_studies/MC_RecoveryTransition/NonGaussianGraphs.py
The file was addedExamples/research/sparsity/monte_carlo_studies/SING_Convergence/GaussianGraphs.py
The file was addedExamples/research/sparsity/monte_carlo_studies/MC_RecoveryTransition/mc_grid9dim.py
The file was addedExamples/research/sparsity/monte_carlo_studies/MC_RecoveryTransition/GaussianGraphs.py
The file was addedExamples/research/sparsity/monte_carlo_studies/MC_RecoveryTransition/python_runs.sh
The file was addedExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/mc_stocvolhyper6dim.py
The file was addedExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/mc_stocvolhyper9dim.py
The file was addedExamples/research/sparsity/monte_carlo_studies/MC_RecoveryTransition/mc_stocvolhyper6dim.py
The file was addedExamples/research/sparsity/monte_carlo_studies/SING_Convergence/NonGaussianGraphs.py
The file was addedExamples/research/sparsity/monte_carlo_studies/SING_Convergence/plotting.py
The file was addedExamples/research/sparsity/monte_carlo_studies/MC_RecoveryTransition/mc_replot.py
The file was addedExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/python_runs.sh
The file was addedExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/mc_stocvolchain6dim.py
The file was addedExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/mc_grid9dim.py
The file was addedExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/NonGaussianGraphs.py
The file was addedExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/mc_star9dim.py
The file was addedExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/mc_chain9dim.py
The file was addedExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/GaussianGraphs.py
The file was addedExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/mc_star6dim.py
The file was addedExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/mc_grid9dim_ord1.py
The file was addedExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/mc_stocvolchain9dim.py
The file was addedExamples/research/sparsity/monte_carlo_studies/SING_Convergence/graph_test.py
The file was addedExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/mc_gaussian.py
The file was addedExamples/research/sparsity/monte_carlo_studies/MC_l1Tests/mc_chain6dim.py
The file was addedExamples/research/sparsity/monte_carlo_studies/SING_Convergence/SparsityIdentificationNonGaussian.py
The file was modifiedExamples/research/EIT/solverCEM.py (diff)
The file was addedExamples/research/EIT/solverNoElectrode.py
The file was addedExamples/research/EIT/solverEIT.py
Commit c99a0ba549b58e0b3e1a71100f5ec10a29019540 by dabi
No electrodes model works
The file was modifiedExamples/research/EIT/solverNoElectrode.py (diff)
Commit 3030f9ab6da8b7238bbd0e07124deaad6d8bcac2 by dabi
working on discretized model
The file was modifiedExamples/research/EIT/solverNoElectrode.py (diff)
Commit 6986721bccfa8fd0bd94ce800c70441e10e6a1c2 by dabi
working on discretized model
The file was addedExamples/research/EIT/solverDiscretized.py
Commit 620e39997e6dafe4524b9c88e2deb0fb9d8cb27c by dabi
gmsh mesh generation for discretized test
The file was modifiedExamples/research/EIT/solverNoElectrode.py (diff)
The file was modifiedExamples/research/EIT/solverDiscretized.py (diff)
The file was addedExamples/research/EIT/GmshGeoGenerator.py
Commit b0dc2ae9dfd2716343f1695cd12c800c4c3a2a3f by dabi
working on complete model
The file was modifiedExamples/research/EIT/solverDiscretized.py (diff)
The file was modifiedExamples/research/EIT/GmshGeoGenerator.py (diff)
Commit 1f0f15d81e7b5c98dcfab7219cb78030e4e5399f by dabi
starting to work on adjoint equations
The file was addedExamples/research/EIT/Discretized/GmshGeoGenerator.py
The file was removedExamples/research/EIT/GmshGeoGenerator.py
The file was addedExamples/research/EIT/NoElectrode/GmshGeoGenerator.py
The file was addedExamples/research/EIT/NoElectrode/solver.py
The file was addedExamples/research/EIT/NoElectrode/KuoShengCheng-test.py
The file was removedExamples/research/EIT/solverDiscretized.py
The file was removedExamples/research/EIT/solverNoElectrode.py
The file was addedExamples/research/EIT/Discretized/solverDiscretized.py
Commit 256eda672a22db333e701419f6efc8c7a7c910ef by dabi
messed up with no-electrodes model..
The file was modifiedExamples/research/EIT/NoElectrode/KuoShengCheng-test.py (diff)
The file was modifiedExamples/research/EIT/NoElectrode/solver.py (diff)
Commit e4538c57ecc86a99fdbec9adefb612fe3ade9718 by dabi
working on fast sensor function
The file was modifiedExamples/research/EIT/NoElectrode/KuoShengCheng-test.py (diff)
The file was addedExamples/research/EIT/NoElectrode/PointWiseMeasurement-test.py
Commit 06d484113c54fa2b073f49c77ff1cc29759ffbca by dabi
fixed sensor expression
The file was modifiedExamples/research/EIT/NoElectrode/solver.py (diff)
The file was modifiedExamples/research/EIT/NoElectrode/PointWiseMeasurement-test.py (diff)
Commit 220f170315beb77bae7e6ab417a6071bce20fe64 by dabi
working on Dirichlet to Neumann model
The file was addedExamples/research/EIT/DirichletToNeumann/main.py
The file was addedExamples/research/EIT/NoElectrode/Adjoint-test.py
The file was addedExamples/research/EIT/DirichletToNeumann/GmshGeoGenerator.py
The file was modifiedExamples/research/EIT/NoElectrode/GmshGeoGenerator.py (diff)
The file was modifiedExamples/research/EIT/NoElectrode/PointWiseMeasurement-test.py (diff)
The file was modifiedExamples/research/EIT/NoElectrode/solver.py (diff)
Commit 44dd7c01b4a40337f8babfa19c2d6d4b689fa209 by dabi
working on adjoint for no electrode model
The file was addedExamples/research/EIT/NoElectrode/DirBC-Adjoint-test.py
The file was modifiedExamples/research/EIT/DirichletToNeumann/main.py (diff)
The file was modifiedExamples/research/EIT/DirichletToNeumann/GmshGeoGenerator.py (diff)
The file was removedExamples/research/EIT/solverCEM.py
The file was addedExamples/research/EIT/CEM/main.py
The file was modifiedExamples/research/EIT/NoElectrode/Adjoint-test.py (diff)
The file was addedExamples/research/Helmholtz/test_adjoint.py
The file was addedExamples/research/Helmholtz/test_solve.py
The file was modifiedExamples/research/Helmholtz/HelmholtzModelDistributions.py (diff)
Commit c6ddef105d4b878be5b023e44c4e95b70e49a228 by dabi
gradient and Hessian working
The file was modifiedExamples/research/Helmholtz/HelmholtzModelDistributions.py (diff)
The file was modifiedExamples/research/Helmholtz/test_solve.py (diff)
The file was modifiedExamples/research/Helmholtz/test_adjoint.py (diff)
Commit 1636cfed392003f2565fecb99501ec919f2d4aa6 by dabi
setting up the posterior distribution
The file was addedExamples/research/Helmholtz/DataGeneration.py
The file was modifiedExamples/research/Helmholtz/HelmholtzModelDistributions.py (diff)
Commit 226b12a7642fb90e9a367e33b51e8055891f2897 by dabi
working on likelihood functions
The file was modifiedExamples/research/Helmholtz/DataGeneration.py (diff)
The file was modifiedExamples/research/Helmholtz/HelmholtzModelDistributions.py (diff)
Commit 72095f663f581421b6390c49a4ab735a2ba92804 by dabi
working on posterior distribution
The file was modifiedExamples/research/Helmholtz/DataGeneration.py (diff)
The file was modifiedExamples/research/Helmholtz/HelmholtzModelDistributions.py (diff)
Commit ffe610d8b5eb9a6a46fdb9ab1a274f0c75e2a43e by dabi
storage/loading of distribution works
The file was modifiedExamples/research/Helmholtz/DataGeneration.py (diff)
The file was modifiedExamples/research/Helmholtz/HelmholtzModelDistributions.py (diff)
Commit 59ff46c09c25911084c5a70ab222dd5d4c2499dd by dabi
working on action of Hessian
The file was modifiedTransportMaps/Distributions/TransportMapDistributions.py (diff)
The file was modifiedTransportMaps/Maps/FrozenTriangularTransportMaps.py (diff)
The file was modifiedTransportMaps/Distributions/DistributionBase.py (diff)
The file was modifiedTransportMaps/Distributions/FrozenDistributions.py (diff)
The file was modifiedTransportMaps/Distributions/Inference/InferenceBase.py (diff)
The file was modifiedTransportMaps/Routines.py (diff)
The file was modifiedTransportMaps/Likelihoods/LikelihoodBase.py (diff)
The file was modifiedTransportMaps/Maps/MapBase.py (diff)
The file was modifiedTransportMaps/Maps/TransportMapBase.py (diff)
Commit e0341aa2ea123d8a514f7ec56a75c57dce2cda74 by dabi
working on action_hess_a for transport map distributions
The file was addedExamples/research/Helmholtz/requirements.txt
The file was modifiedTransportMaps/Functionals/ParametricFunctionApproximationBase.py (diff)
The file was modifiedExamples/research/Helmholtz/DataGeneration.py (diff)
The file was modifiedTransportMaps/Likelihoods/LikelihoodBase.py (diff)
The file was modifiedTransportMaps/Maps/FrozenTriangularTransportMaps.py (diff)
The file was modifiedTransportMaps/Distributions/FrozenDistributions.py (diff)
The file was modifiedTransportMaps/Maps/TriangularTransportMapBase.py (diff)
The file was modifiedTransportMaps/Maps/TransportMapBase.py (diff)
The file was modifiedTransportMaps/tests/test_transportmap_distributions.py (diff)
The file was modifiedExamples/research/Helmholtz/HelmholtzModelDistributions.py (diff)
The file was modifiedTransportMaps/Distributions/TransportMapDistributions.py (diff)
The file was modifiedTransportMaps/tests/TestFunctions.py (diff)
Commit 8ecf1c5af42658f39a35111ab50f928993592a2d by dabi
working on minimization of kl divergence using action of the Hessian
The file was modifiedTransportMaps/Maps/TriangularTransportMapBase.py (diff)
The file was modifiedTransportMaps/Maps/FrozenTriangularTransportMaps.py (diff)
The file was modifiedTransportMaps/Routines.py (diff)
The file was modifiedTransportMaps/Maps/TransportMapBase.py (diff)
The file was modifiedTransportMaps/Maps/FullTransportMaps.py (diff)
The file was modifiedTransportMaps/Distributions/TransportMapDistributions.py (diff)
The file was modifiedTransportMaps/tests/test_transportmaps.py (diff)
The file was modifiedTransportMaps/Maps/TriangularTransportMaps.py (diff)
The file was modifiedTransportMaps/tests/test_transportmap_distributions.py (diff)
Commit aeabf83b427f2d2912ee138612a2cc3641033cf8 by dabi
working on kl minimization tests
The file was modifiedTransportMaps/Routines.py (diff)
The file was modifiedTransportMaps/tests/test_kl_minimization.py (diff)
The file was modifiedTransportMaps/tests/test_kl_divergence.py (diff)
Commit bc54e1211c86945459b44a2d6b16e631ddca66db by dabi
unit tests are passing. todo: caching in Likelihood to avoid extra
function and gradient evaluations
The file was modifiedTransportMaps/tests/test_L2_misfit.py (diff)
Commit dabe8c79bf6be50a7054dfa2b78cd2f7077e0a2b by dabi
the distribution object is now pre-broadcasted to the children in
kl-minimization. Fixes #82
The file was modifiedTransportMaps/Maps/TriangularTransportMapBase.py (diff)
The file was modifiedTransportMaps/Maps/TriangularTransportMaps.py (diff)
The file was modifiedTransportMaps/Maps/TransportMapBase.py (diff)
The file was modifiedTransportMaps/Distributions/TransportMapDistributions.py (diff)
Commit e52459698d03a628bec5ebd648d71fa141ec28e0 by dabi
fixed test_kl_divergence
The file was modifiedTransportMaps/tests/test_kl_divergence.py (diff)
The file was modifiedTransportMaps/Maps/MapBase.py (diff)
Commit 77ebfc2e378370310aae90cf4818e78159d31c9e by dabi
working on caching of Likelihood evaluations
The file was modifiedTransportMaps/Misc.py (diff)
The file was modifiedTransportMaps/Maps/MapBase.py (diff)
Commit 9130101e1fb80460a68c2307b28b0d9318f2ce70 by dabi
fixed init function
The file was modifiedTransportMaps/Maps/TriangularTransportMapBase.py (diff)
Commit e0d22f01803fb453d0b7a2e28ac51f93e4ed77e3 by dabi
The action of the Hessian is ready. Fixes #31. Caching issues reserved
to #83.
The file was modifiedTransportMaps/Misc.py (diff)
Commit 4dca51b336ca704d613c64e8818db12b073a29b1 by dabi
introducing cached and counted decorators
The file was modifiedTransportMaps/Functionals/ParametricFunctionApproximationBase.py (diff)
The file was modifiedTransportMaps/Misc.py (diff)
The file was modifiedTransportMaps/Maps/TransportMapBase.py (diff)
The file was modifiedTransportMaps/Functionals/LinearSpanApproximationBase.py (diff)
The file was modifiedTransportMaps/tests/test_functions.py (diff)
The file was modifiedTransportMaps/Functionals/AlgebraicLinearSpanApproximations.py (diff)
The file was modifiedTransportMaps/Functionals/FunctionBase.py (diff)
The file was modifiedTransportMaps/Functionals/MonotonicFunctionApproximations.py (diff)
Commit 2e4189f3160cc47a04d72d7ea6a2457ae6bd6836 by dabi
adding counting output
The file was modifiedTransportMaps/Misc.py (diff)
The file was modifiedTransportMaps/Maps/TransportMapBase.py (diff)
The file was modifiedTransportMaps/Maps/MapBase.py (diff)
The file was modifiedTransportMaps/Functionals/FunctionBase.py (diff)
The file was modifiedTransportMaps/Functionals/MonotonicFunctionApproximations.py (diff)
Commit fc49f4638a8e02766ebf19710969e4b8490ea37d by dabi
caching to be finished in TransportMaps and Maps in general. Then I need
to move to caching for distributions
The file was modifiedTransportMaps/Misc.py (diff)
The file was modifiedTransportMaps/Functionals/MonotonicFunctionApproximations.py (diff)
The file was modifiedTransportMaps/Maps/TriangularTransportMaps.py (diff)
Commit 3436085cad92f36105c7c7dc10da3ca470626a16 by dabi
still working on maps...
The file was modifiedTransportMaps/Maps/TransportMapBase.py (diff)
The file was modifiedTransportMaps/Maps/SimpleTransportMaps.py (diff)
The file was modifiedTransportMaps/Maps/Decomposable/SequentialInferenceMaps.py (diff)
Commit eecb5f784cadbad2a04c318b9fc6d80b7e138c2b by dabi
working on distributions
The file was modifiedTransportMaps/Distributions/ConditionalDistributions.py (diff)
The file was modifiedTransportMaps/Maps/MapBase.py (diff)
The file was modifiedTransportMaps/Densities/Densities.py (diff)
The file was modifiedTransportMaps/Densities/Decomposable/SequentialInferenceDensities.py (diff)
The file was modifiedTransportMaps/Distributions/TransportMapDistributions.py (diff)
The file was modifiedTransportMaps/Distributions/ParametricDistributionBase.py (diff)
The file was modifiedTransportMaps/Functionals/AlgebraicLinearSpanApproximations.py (diff)
The file was modifiedTransportMaps/ObjectBase.py (diff)
The file was modifiedTransportMaps/Functionals/MonotonicFunctionApproximations.py (diff)
The file was modifiedTransportMaps/Maps/TransportMapBase.py (diff)
The file was modifiedTransportMaps/Maps/Decomposable/SequentialInferenceMaps.py (diff)
The file was modifiedTransportMaps/Algorithms/SequentialInference/SequentialInferenceBase.py (diff)
The file was modifiedTransportMaps/Densities/Inference/InferenceBase.py (diff)
The file was modifiedTransportMaps/Distributions/DistributionBase.py (diff)
The file was modifiedTransportMaps/Functionals/ParametricFunctionApproximationBase.py (diff)
The file was modifiedTransportMaps/Misc.py (diff)
The file was modifiedTransportMaps/Algorithms/__init__.py (diff)
The file was modifiedTransportMaps/Distributions/FrozenDistributions.py (diff)
Commit e50e966b74257dc534cd9bf6a71d0456cfa4d085 by dabi
testing caching. todo: caching in optimization problems
The file was modifiedTransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.py (diff)
The file was modifiedTransportMaps/Maps/TransportMapBase.py (diff)
The file was modifiedTransportMaps/Functionals/MonotonicFunctionApproximations.py (diff)
The file was modifiedTransportMaps/Functionals/ParametricFunctionApproximationBase.py (diff)
The file was modifiedTransportMaps/Distributions/DistributionBase.py (diff)
The file was modifiedTransportMaps/Distributions/TransportMapDistributions.py (diff)
The file was modifiedTransportMaps/Distributions/ConditionalDistributions.py (diff)
The file was modifiedTransportMaps/Distributions/Examples/StochasticVolatility/StocVolHyperDistributions.py (diff)
The file was modifiedTransportMaps/Distributions/Inference/InferenceBase.py (diff)
The file was modifiedTransportMaps/Likelihoods/LikelihoodBase.py (diff)
The file was modifiedTransportMaps/Functionals/AlgebraicLinearSpanApproximations.py (diff)
The file was modifiedTransportMaps/Misc.py (diff)
Commit 5983786da831554b5dd63da88dc2a05636c35650 by dabi
added caching and counting wherever needed (maybe missing some spots).
To be extensively tested...
The file was modifiedTransportMaps/Distributions/ParametricDistributionBase.py (diff)
The file was modifiedTransportMaps/Functionals/AlgebraicLinearSpanApproximations.py (diff)
The file was modifiedTransportMaps/Functionals/LinearSpanApproximationBase.py (diff)
The file was modifiedTransportMaps/Functionals/MonotonicFunctionApproximations.py (diff)
The file was modifiedTransportMaps/Maps/TransportMapBase.py (diff)
The file was modifiedTransportMaps/Distributions/DistributionBase.py (diff)
The file was modifiedTransportMaps/Distributions/Examples/StochasticVolatility/StocVolHyperDistributions.py (diff)
The file was modifiedTransportMaps/Maps/TriangularTransportMapBase.py (diff)
The file was modifiedTransportMaps/Distributions/TransportMapDistributions.py (diff)
The file was modifiedTransportMaps/Distributions/ConditionalDistributions.py (diff)
The file was modifiedTransportMaps/Distributions/Inference/InferenceBase.py (diff)
The file was modifiedTransportMaps/Likelihoods/LikelihoodBase.py (diff)
The file was modifiedTransportMaps/Maps/Decomposable/SequentialInferenceMaps.py (diff)
The file was modifiedTransportMaps/Distributions/FrozenDistributions.py (diff)
The file was modifiedTransportMaps/Misc.py (diff)
The file was modifiedTransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.py (diff)
Commit 6373d35ee627c07a69d142dd88d6fcdf842d2dd5 by dabi
working on caching in Hessian. Todo: update and run unittests
The file was modifiedTransportMaps/Distributions/FrozenDistributions.py (diff)
The file was modifiedTransportMaps/Maps/TriangularTransportMapBase.py (diff)
The file was modifiedTransportMaps/Maps/__init__.py (diff)
The file was modifiedTransportMaps/Maps/MapBase.py (diff)
The file was modifiedTransportMaps/tests/test_transportmaps.py (diff)
The file was modifiedTransportMaps/tests/TestFunctions.py (diff)
The file was modifiedTransportMaps/Algorithms/SequentialInference/NonLinearSequentialInference.py (diff)
The file was modifiedTransportMaps/Maps/TransportMapBase.py (diff)
The file was modifiedTransportMaps/Maps/FullTransportMaps.py (diff)
The file was modifiedTransportMaps/Maps/FrozenTriangularTransportMaps.py (diff)
Commit 76b7bbafd2fd128f31d92e5ec3c03a3fae997fd0 by dabi
adding reset counters functionalities
The file was modifiedTransportMaps/ObjectBase.py (diff)
The file was modifiedTransportMaps/Maps/FullTransportMaps.py (diff)
The file was modifiedTransportMaps/Functionals/MonotonicFunctionApproximations.py (diff)
The file was modifiedTransportMaps/Maps/TransportMapBase.py (diff)
The file was modifiedTransportMaps/Maps/MapBase.py (diff)
The file was modifiedTransportMaps/Distributions/FrozenDistributions.py (diff)
Commit 8ffc4f3fa238705a0d6d4396f12bb1d4c6ecb3b2 by dabi
counting and resetting works. Caching also seems to work. TODO:
Integrate into the optimization routines
The file was modifiedTransportMaps/Maps/TransportMapBase.py (diff)
The file was modifiedTransportMaps/Distributions/TransportMapDistributions.py (diff)
The file was modifiedTransportMaps/Functionals/MonotonicFunctionApproximations.py (diff)
Commit 5935997e9b049497e2be250e1aebb51b5476830d by dabi
caching does what is supposed to do!
The file was modifiedTransportMaps/Distributions/TransportMapDistributions.py (diff)
The file was modifiedTransportMaps/Misc.py (diff)
The file was modifiedTransportMaps/Maps/TransportMapBase.py (diff)
Commit f91f8e7feb8dd0e08d7884b48c39a0cda6f89ceb by dabi
added manual test for caching and counting
The file was addedManualTests/test_caching_and_counting.py
Commit 5823242188d29df0572d41fcc6fe83e5ff96ca7c by dabi
working on caching minimization routine
The file was modifiedTransportMaps/Routines.py (diff)
The file was modifiedTransportMaps/Maps/TransportMapBase.py (diff)
The file was modifiedTransportMaps/Maps/TriangularTransportMapBase.py (diff)
Commit c5c988831ff75c5437be6007af970874fa2b093d by dabi
working on unit tests for kl-divergence
The file was modifiedTransportMaps/tests/test_kl_divergence.py (diff)
The file was modifiedTransportMaps/Maps/TransportMapBase.py (diff)
The file was modifiedTransportMaps/Distributions/FrozenDistributions.py (diff)
The file was modifiedTransportMaps/Maps/TriangularTransportMaps.py (diff)
The file was modifiedTransportMaps/Distributions/TransportMapDistributions.py (diff)
The file was modifiedTransportMaps/Maps/TriangularTransportMapBase.py (diff)
Commit a2d03ec5162f3b81dc20c5c40b815b28d7005287 by dabi
working on test_kl_divergence.py
The file was modifiedTransportMaps/Distributions/FrozenDistributions.py (diff)
The file was modifiedTransportMaps/Distributions/TransportMapDistributions.py (diff)
The file was modifiedTransportMaps/Maps/TriangularTransportMapBase.py (diff)
The file was modifiedTransportMaps/Misc.py (diff)
The file was modifiedTransportMaps/tests/test_kl_divergence.py (diff)
The file was modifiedTransportMaps/Maps/MapBase.py (diff)
The file was modifiedTransportMaps/Functionals/MonotonicFunctionApproximations.py (diff)
The file was modifiedTransportMaps/Maps/TransportMapBase.py (diff)
The file was modifiedTransportMaps/tests/TestFunctions.py (diff)
Commit afaca4f573505e47618bf14dd73b3890ff13d969 by dabi
fixing  an error at a time...
The file was modifiedTransportMaps/tests/test_kl_divergence.py (diff)
The file was modifiedTransportMaps/Maps/TransportMapBase.py (diff)
The file was modifiedTransportMaps/Distributions/TransportMapDistributions.py (diff)
The file was modifiedTransportMaps/Functionals/AlgebraicLinearSpanApproximations.py (diff)
The file was modifiedTransportMaps/Maps/MapBase.py (diff)
Commit 1be890a1311aa6179372eb77262422c3b84147c5 by dabi
kl_min tests work!
The file was modifiedTransportMaps/Maps/TriangularTransportMapBase.py (diff)
The file was modifiedTransportMaps/Maps/TriangularTransportMaps.py (diff)
The file was modifiedTransportMaps/Functionals/ProductDistributionParametricPullbackComponentFunctionBase.py (diff)
The file was modifiedTransportMaps/Maps/TransportMapBase.py (diff)
The file was modifiedTransportMaps/Maps/MapBase.py (diff)
Commit fcc522838031aad880c8dd84d5095d30d2c22260 by dabi
fixing all unit tests
The file was modifiedTransportMaps/Algorithms/SequentialInference/SequentialInferenceBase.py (diff)
The file was modifiedTransportMaps/Distributions/DistributionBase.py (diff)
The file was modifiedTransportMaps/Distributions/Inference/InferenceBase.py (diff)
The file was modifiedTransportMaps/Maps/Decomposable/SequentialInferenceMaps.py (diff)
The file was modifiedTransportMaps/Functionals/AlgebraicLinearSpanApproximations.py (diff)
The file was modifiedTransportMaps/Maps/TransportMapBase.py (diff)
The file was modifiedTransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.py (diff)
The file was modifiedTransportMaps/Distributions/Examples/SimpleDistributions.py (diff)
The file was modifiedTransportMaps/Algorithms/SequentialInference/LinearSequentialInference.py (diff)
The file was modifiedTransportMaps/Maps/MapBase.py (diff)
Commit deae761051d029b6a1b240a1233df42051efabf1 by dabi
porting MPI implementation to mpi_map v2.0
The file was modifiedTransportMaps/Samplers/MarkovChainSamplers.py (diff)
The file was modifiedTransportMaps/tests/test_L2_misfit.py (diff)
The file was modifiedTransportMaps/Distributions/ParametricDistributionBase.py (diff)
The file was modifiedTransportMaps/Functionals/LinearSpanApproximationBase.py (diff)
The file was modifiedTransportMaps/Maps/TriangularTransportMapBase.py (diff)
The file was modifiedTransportMaps/Routines.py (diff)
The file was modifiedTransportMaps/Functionals/MonotonicFunctionApproximations.py (diff)
The file was modifiedTransportMaps/Functionals/ParametricFunctionApproximationBase.py (diff)
The file was modifiedTransportMaps/Maps/MapBase.py (diff)
The file was modifiedTransportMaps/Samplers/IndependentSamplers.py (diff)
The file was modifiedTransportMaps/Distributions/TransportMapDistributions.py (diff)
The file was modifiedTransportMaps/Maps/TransportMapBase.py (diff)
The file was modifiedTransportMaps/Maps/TriangularTransportMaps.py (diff)
The file was modifiedTransportMaps/Misc.py (diff)
The file was modifiedTransportMaps/tests/test_kl_divergence.py (diff)
Commit 63e70156833ef989cf00426a7566d86e3f1aa816 by dabi
porting to mpi_map v2.0 completed. ToBeTested!!
The file was modifiedTransportMaps/Routines.py (diff)
The file was modifiedTransportMaps/Diagnostics/Plotting.py (diff)
The file was modifiedTransportMaps/tests/test_kl_divergence.py (diff)
The file was modifiedTransportMaps/Distributions/TransportMapDistributions.py (diff)
The file was modifiedTransportMaps/Diagnostics/Routines.py (diff)
Commit 994b6b4c163bd8d07ec698c9ddbd33b6dd14a2a4 by dabi
mpi_map v2 integrated and passing unit tests
The file was modifiedTransportMaps/Misc.py (diff)
The file was modifiedTransportMaps/tests/test_kl_divergence.py (diff)
The file was modifiedTransportMaps/Maps/TriangularTransportMaps.py (diff)
The file was modifiedTransportMaps/Maps/TriangularTransportMapBase.py (diff)
The file was modifiedTransportMaps/tests/test_transportmap_distributions_sampling.py (diff)
The file was modifiedTransportMaps/Routines.py (diff)
The file was modifiedTransportMaps/Algorithms/Adaptivity/RegressionAdaptivity.py (diff)
The file was modifiedTransportMaps/Maps/TransportMapBase.py (diff)
The file was modifiedTransportMaps/Functionals/MonotonicFunctionApproximations.py (diff)
The file was modifiedTransportMaps/tests/test_L2_minimization.py (diff)
The file was modifiedTransportMaps/tests/test_L2_misfit.py (diff)
The file was modifiedTransportMaps/Functionals/ParametricFunctionApproximationBase.py (diff)
The file was modifiedTransportMaps/Functionals/ProductDistributionParametricPullbackComponentFunctionBase.py (diff)
The file was modifiedTransportMaps/tests/test_kl_minimization.py (diff)
Commit 3bb198231cd1ff02f5412eb79415f94565cc5311 by dabi
gathering of ncalls and nevals count at the end of optimization done
The file was modifiedTransportMaps/Likelihoods/LikelihoodBase.py (diff)
The file was modifiedTransportMaps/Functionals/MonotonicFunctionApproximations.py (diff)
The file was modifiedTransportMaps/ObjectBase.py (diff)
The file was modifiedTransportMaps/Maps/TriangularTransportMaps.py (diff)
The file was modifiedTransportMaps/Distributions/ConditionalDistributions.py (diff)
The file was modifiedTransportMaps/Distributions/Inference/InferenceBase.py (diff)
The file was modifiedTransportMaps/Maps/TransportMapBase.py (diff)
The file was modifiedTransportMaps/Maps/Decomposable/SequentialInferenceMaps.py (diff)
The file was modifiedTransportMaps/Distributions/DistributionBase.py (diff)
The file was modifiedTransportMaps/Functionals/FunctionBase.py (diff)
The file was modifiedTransportMaps/Distributions/TransportMapDistributions.py (diff)
The file was modifiedTransportMaps/Maps/MapBase.py (diff)
The file was modifiedTransportMaps/Maps/TriangularTransportMapBase.py (diff)
The file was modifiedTransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.py (diff)
The file was modifiedTransportMaps/Maps/MapBase.py (diff)
Commit 354df150c9c99df38d6cc48fefd952c6a52e5af6 by dabi
now pointing to MPI_Pool_v2 in mpi_map v2.0
The file was modifiedTransportMaps/Misc.py (diff)
Commit 39fe065427354de01e70c88028ced9a1929d277e by dabi
returning latest cache within log dictionary
The file was modifiedTransportMaps/Maps/TriangularTransportMapBase.py (diff)
The file was modifiedTransportMaps/Maps/TriangularTransportMaps.py (diff)
Commit a59001c198dca7ea9a5b84f2dded9cb8486850d3 by dabi
fixed py2/py3 issue with cached decorator
The file was modifiedTransportMaps/Misc.py (diff)
Commit 009941d9f9f12905d772a655fd4ae4073839c064 by dabi
fixed py2/py3 issue with cached decorator
The file was modifiedTransportMaps/Misc.py (diff)
Commit 0ba2d483296f6fa2fe34821d72c6cddbe7b2937c by dabi
fixed py2/py3 issue with cached decorator
The file was modifiedTransportMaps/Distributions/FrozenDistributions.py (diff)
Commit 208e3e59f4bdc172cc5a9d3673892f9dfde8835a by dabi
fixing py2/py3 handling of *args and **kwargs (PEP3102)
The file was modifiedTransportMaps/Distributions/Inference/InferenceBase.py (diff)
The file was modifiedrequirements-MPI.txt (diff)
The file was modifiedTransportMaps/Distributions/DistributionBase.py (diff)
The file was modifiedsetup.py (diff)
The file was modifiedTransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.py (diff)
The file was modifiedTransportMaps/Likelihoods/LikelihoodBase.py (diff)
The file was modifiedTransportMaps/Misc.py (diff)
The file was modifiedTransportMaps/Distributions/Examples/StochasticVolatility/StocVolHyperDistributions.py (diff)
The file was modifiedTransportMaps/tests/test_distributions.py (diff)
The file was addedrequirements-PYHMC.txt
Commit 2271d6e49bec916958ff7633a8c403bddd381c53 by dabi
working on target distribution
The file was modifiedExamples/research/Helmholtz/HelmholtzModelDistributions.py (diff)
The file was modifiedTransportMaps/Likelihoods/LikelihoodBase.py (diff)
The file was modifiedTransportMaps/Distributions/Inference/InferenceBase.py (diff)
Commit 3067adb6eba22a53bc3c9642cc43e3ca4cba05a4 by dabi
working on mpi evaluation of target density
The file was addedExamples/research/Helmholtz/test_distribution.py
Commit 531d232f73124ff38cd5737036c9b9a1bcec6cb6 by dabi
working on constant field data generation and parallel implementation
The file was modifiedTransportMaps/FiniteDifference.py (diff)
The file was addedExamples/research/Helmholtz/FieldDataGeneration.py
The file was addedExamples/research/Helmholtz/ConstantFieldDataGeneration.py
The file was modifiedExamples/research/Helmholtz/test_distribution.py (diff)
The file was modifiedTransportMaps/Misc.py (diff)
The file was modifiedExamples/research/Helmholtz/HelmholtzModelDistributions.py (diff)
The file was removedExamples/research/Helmholtz/DataGeneration.py
Commit 03e24705c31ce1fd0635a8c0e4b7174fee22483b by dabi
working on speeding up function and gradient evaluatiions
The file was modifiedExamples/research/Helmholtz/HelmholtzModelDistributions.py (diff)
The file was modifiedExamples/research/Helmholtz/test_distribution.py (diff)
The file was modifiedExamples/research/Helmholtz/ConstantFieldDataGeneration.py (diff)
The file was modifiedTransportMaps/Maps/MapBase.py (diff)
The file was modifiedTransportMaps/Likelihoods/LikelihoodBase.py (diff)
Commit 86e20bb859c29f9f195274fb15ded7750e43fef6 by dabi
implemented fungrad
The file was modifiedExamples/research/Helmholtz/test_distribution.py (diff)
The file was modifiedTransportMaps/Misc.py (diff)
The file was modifiedExamples/research/Helmholtz/HelmholtzModelDistributions.py (diff)
The file was modifiedTransportMaps/Likelihoods/LikelihoodBase.py (diff)
The file was modifiedTransportMaps/Maps/MapBase.py (diff)
Commit 5e99c59bc02ddfc76dfad4532d27260bf98b7f09 by dabi
working of action of Hessian
The file was modifiedTransportMaps/Distributions/DistributionBase.py (diff)
The file was modifiedExamples/research/Helmholtz/HelmholtzModelDistributions.py (diff)
The file was modifiedTransportMaps/Distributions/Inference/InferenceBase.py (diff)
The file was modifiedTransportMaps/Misc.py (diff)
The file was modifiedTransportMaps/Distributions/ConditionalDistributions.py (diff)
The file was modifiedExamples/research/Helmholtz/test_distribution.py (diff)
The file was modifiedTransportMaps/Maps/TransportMapBase.py (diff)
The file was modifiedTransportMaps/Maps/Decomposable/SequentialInferenceMaps.py (diff)
The file was modifiedTransportMaps/Maps/MapBase.py (diff)
The file was modifiedTransportMaps/Likelihoods/LikelihoodBase.py (diff)
The file was modifiedTransportMaps/Distributions/TransportMapDistributions.py (diff)
The file was modifiedTransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.py (diff)
Commit a05dd6d138f1b8e2eeff76e81d14e5340fe7847e by dabi
mpi implementation not working...
The file was modifiedExamples/research/Helmholtz/HelmholtzModelDistributions.py (diff)
The file was modifiedExamples/research/Helmholtz/test_distribution.py (diff)
The file was modifiedTransportMaps/Misc.py (diff)
Commit 02fd425f7df600d66bd63000a5ad809751f1ffd1 by dabi
staring solving simple problems..
The file was modifiedExamples/research/Helmholtz/HelmholtzModelDistributions.py (diff)
The file was modifiedTransportMaps/Maps/TransportMapBase.py (diff)
The file was modifiedTransportMaps/Maps/TriangularTransportMaps.py (diff)
The file was modifiedTransportMaps/Maps/MapBase.py (diff)
The file was modifiedscripts/tmap-tm (diff)
The file was modifiedTransportMaps/Maps/TriangularTransportMapBase.py (diff)
Commit 16d0c3fd8c72c8142e966384bc4570d47e8f004f by dabi
working on constant field problem and parallelization
The file was modifiedExamples/research/Helmholtz/HelmholtzModelDistributions.py (diff)
The file was modifiedExamples/research/Helmholtz/test_distribution.py (diff)
The file was modifiedTransportMaps/Samplers/Routines.py (diff)
The file was modifiedTransportMaps/CLI/PostprocessBase.py (diff)
The file was modifiedTransportMaps/Samplers/MarkovChainSamplers.py (diff)
The file was modifiedscripts/tmap-tm (diff)
The file was modifiedDocs/source/example-beta-1d.ipynb (diff)
Commit 7fee690755521960d6195d5654e73e0e8620e56c by dabi
working on the problem set up
The file was modifiedTransportMaps/Distributions/FrozenDistributions.py (diff)
The file was modifiedExamples/research/Helmholtz/HelmholtzModelDistributions.py (diff)
The file was modifiedExamples/research/Helmholtz/test_distribution.py (diff)
The file was modifiedscripts/tmap-tm (diff)
The file was modifiedTransportMaps/Misc.py (diff)
The file was modifiedscripts/tmap-postprocess (diff)
The file was modifiedTransportMaps/Diagnostics/Plotting.py (diff)
Commit 3f82cd0324f3fada136bbcbedc5d5b654a3589d0 by dabi
data generation for constant field works
The file was addedExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.py
The file was modifiedExamples/research/EIT/NoElectrode/solver.py (diff)
The file was addedExamples/research/EIT/NoElectrode/Adjoint-test-analytic.py
The file was addedExamples/research/EIT/NoElectrode/ConstantFieldDataGeneration.py
Commit ffdfff50d0737830d5d087be0c9d90448addb3ac by dabi
working on adjoint for field
The file was addedExamples/research/EIT/NoElectrode/Adjoint-test-field.py
The file was modifiedExamples/research/EIT/NoElectrode/ConstantFieldDataGeneration.py (diff)
The file was modifiedExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.py (diff)
The file was modifiedExamples/research/EIT/NoElectrode/Adjoint-test-analytic.py (diff)
The file was modifiedExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.py (diff)
The file was modifiedExamples/research/EIT/NoElectrode/Adjoint-test-field.py (diff)
Commit ef50f6abe8deff22a063193a685f1a47757d86d6 by dabi
working on Hessian of EIT problem
The file was addedExamples/research/EIT/NoElectrode/Adjoint-test-const.py
The file was modifiedExamples/research/EIT/NoElectrode/Adjoint-test-field.py (diff)
The file was modifiedTransportMaps/Misc.py (diff)
The file was removedExamples/research/EIT/NoElectrode/Adjoint-test-analytic.py
The file was addedExamples/research/EIT/NoElectrode/GaussianFieldDataGeneration.py
The file was modifiedExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.py (diff)
The file was modifiedExamples/research/Helmholtz/HelmholtzModelDistributions.py (diff)
The file was removedExamples/research/EIT/NoElectrode/DirBC-Adjoint-test.py
The file was removedExamples/research/EIT/NoElectrode/Adjoint-test.py
Commit 751f28a5afa8d75f50f543d23c9b45ecf84ff114 by dabi
working on hessian
The file was modifiedExamples/research/EIT/NoElectrode/Adjoint-test-field.py (diff)
The file was modifiedTransportMaps/FiniteDifference.py (diff)
Commit 2a48e701feca1870ad27811802d5df51a76d9fa7 by dabi
fixed counter reset in some classes
The file was modifiedTransportMaps/CLI/PostprocessBase.py (diff)
The file was modifiedTransportMaps/Diagnostics/Plotting.py (diff)
The file was modifiedTransportMaps/Maps/TriangularTransportMapBase.py (diff)
The file was modifiedTransportMaps/Maps/SimpleTransportMaps.py (diff)
The file was modifiedExamples/research/EIT/NoElectrode/ConstantFieldDataGeneration.py (diff)
The file was modifiedTransportMaps/Maps/MapBase.py (diff)
The file was modifiedTransportMaps/Distributions/DistributionBase.py (diff)
The file was modifiedscripts/tmap-sequential-tm (diff)
Commit f94f55b732074577f4e821e61e9260ad7277e5d0 by dabi
fixing regularization
The file was modifiedTransportMaps/Maps/TransportMapBase.py (diff)
Commit bd39a396f3bfd5c2aa7d1db83836fd90d9698748 by dabi
fixed caching for tuple_grad_a
The file was modifiedTransportMaps/Misc.py (diff)
Commit 3e4d38e8f1a88581d35c424d8bda8800ac1ebbf6 by dabi
fixed some issues with tests and new counting decorators
The file was modifiedExamples/stable/StochasticVolatility/DataGeneration.py (diff)
The file was modifiedTransportMaps/Functionals/ParametricFunctionApproximationBase.py (diff)
The file was modifiedTransportMaps/tests/test_transportmap_distributions.py (diff)
The file was modifiedTransportMaps/Functionals/LinearSpanApproximationBase.py (diff)
The file was modifiedTransportMaps/Distributions/FrozenDistributions.py (diff)
Commit 6e7569ce807c13c411e92970f895946ac37c1fad by dabi
action of the Hessian for EIT works. To be integrated in distribution
definition
The file was modifiedExamples/research/EIT/NoElectrode/solver.py (diff)
The file was modifiedExamples/research/EIT/NoElectrode/Adjoint-test-field.py (diff)
Commit 1d9a9186e1462aff46c4a2d2e0d0a7d690808f15 by dabi
eit hessian works with caching of solution and adjoints
The file was modifiedExamples/research/EIT/NoElectrode/GaussianFieldDataGeneration.py (diff)
The file was modifiedTransportMaps/Misc.py (diff)
The file was modifiedExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.py (diff)
Commit 59ec34c0a998e48322c44081fa79dd40e2574cb2 by dabi
EIT field distribution works with MPI
The file was addedExamples/research/EIT/NoElectrode/test_distribution.py
The file was modifiedExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.py (diff)
The file was modifiedExamples/research/EIT/NoElectrode/GmshGeoGenerator.py (diff)
The file was modifiedTransportMaps/Misc.py (diff)
The file was modifiedExamples/research/EIT/NoElectrode/GaussianFieldDataGeneration.py (diff)
Commit 7bd381c45ba6688d0ea13e0f91f848d085523fee by dabi
added possibility to add real fields by expression
The file was modifiedExamples/research/EIT/NoElectrode/test_distribution.py (diff)
The file was modifiedExamples/research/EIT/NoElectrode/GaussianFieldDataGeneration.py (diff)
The file was modifiedExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.py (diff)
Commit 4f93f2a3e1fffa16c0ae7786e644908974d3f5fd by dabi
disabled plotting if not available
The file was modifiedExamples/research/EIT/NoElectrode/test_distribution.py (diff)
Commit 5346e46e4d1b38aa314dbf73aaff524dc988cbc8 by dabi
distributions work on cluster
The file was addedExamples/research/EIT/NoElectrode/submit_slurm.sh
The file was modifiedExamples/research/EIT/NoElectrode/test_distribution.py (diff)
The file was addedExamples/research/EIT/NoElectrode/test_distribution_mpi.py
Commit 8840b48fc6cded8ead0fd7ada53715ba22a9d745 by dabi
made EIT solver into a class
The file was modifiedExamples/research/EIT/NoElectrode/test_distribution.py (diff)
Commit 0b4667ec243bfffdb0573e62abed0afeb22066c3 by dabi
working on validators
The file was modifiedTransportMaps/Maps/Decomposable/SequentialInferenceMaps.py (diff)
The file was modifiedTransportMaps/__init__.py (diff)
The file was modifiedTransportMaps/Functionals/MonotonicFunctionApproximations.py (diff)
The file was modifiedTransportMaps/Diagnostics/__init__.py (diff)
The file was modifiedTransportMaps/Maps/TriangularTransportMaps.py (diff)
The file was modifiedTransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.py (diff)
The file was addedTransportMaps/Diagnostics/Validators.py
The file was modifiedTransportMaps/Distributions/Inference/InferenceBase.py (diff)
The file was modifiedTransportMaps/Maps/MapBase.py (diff)
The file was modifiedTransportMaps/Maps/TransportMapBase.py (diff)
The file was modifiedTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
The file was modifiedTransportMaps/Distributions/DistributionBase.py (diff)
The file was modifiedTransportMaps/Distributions/TransportMapDistributions.py (diff)
The file was addedExamples/research/adaptivity/tests/test_validators.py
The file was modifiedTransportMaps/Distributions/ConditionalDistributions.py (diff)
The file was modifiedTransportMaps/ObjectBase.py (diff)
The file was modifiedTransportMaps/Misc.py (diff)
The file was modifiedTransportMaps/Likelihoods/LikelihoodBase.py (diff)
The file was modifiedExamples/research/adaptivity/tests/test_validators.py (diff)
The file was modifiedTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
The file was modifiedTransportMaps/Diagnostics/Validators.py (diff)
The file was modifiedTransportMaps/Misc.py (diff)
Commit 779017b672e059857c9a4118ba68676c95535c8e by dabi
implementing gradient based validators
The file was modifiedTransportMaps/Misc.py (diff)
The file was modifiedExamples/research/adaptivity/tests/test_validators.py (diff)
The file was modifiedTransportMaps/Diagnostics/Validators.py (diff)
The file was modifiedExamples/research/adaptivity/tests/test_validators.py (diff)
The file was modifiedTransportMaps/Diagnostics/Validators.py (diff)
Commit a0bd9deec4a1b32b5c39c4ef9b3bd8f0afd8848f by dabi
working on adaptivity algorithm
The file was modifiedTransportMaps/Diagnostics/Validators.py (diff)
The file was modifiedTransportMaps/Routines.py (diff)
The file was modifiedExamples/research/adaptivity/tests/test_validators.py (diff)
The file was modifiedTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
Commit 216c7231566cc4167f5a45be5e3032c96c7d3881 by dabi
working on the adaptivity algorithm
The file was modifiedTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
Commit c62d436424ddda20bfbcdca90d2ec70597fbc8fb by dabi
adding adaptivity options to tmap-tm
The file was modifiedTransportMaps/Diagnostics/Validators.py (diff)
The file was modifiedTransportMaps/CLI/AvailableOptions.py (diff)
The file was modifiedTransportMaps/Maps/TriangularTransportMaps.py (diff)
The file was modifiedTransportMaps/Maps/TriangularTransportMapBase.py (diff)
The file was modifiedscripts/tmap-tm (diff)
The file was modifiedTransportMaps/ObjectBase.py (diff)
The file was modifiedTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
Commit a24b7dea6d030f11dbf76fddcda7614ce3375084 by dabi
working on launching script tmap-tm
The file was modifiedTransportMaps/CLI/AvailableOptions.py (diff)
The file was modifiedscripts/tmap-tm (diff)
The file was modifiedTransportMaps/Misc.py (diff)
The file was modifiedTransportMaps/Diagnostics/Validators.py (diff)
Commit 52f31e2de26ffdcbb0b78757ba28312b68975fe3 by dabi
changing builder classes to imbed parameters and take distributions on
solve
The file was modifiedscripts/tmap-tm (diff)
The file was modifiedTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
Commit 966913b70d9f75ba38ae798e3316b4dc921c194e by dabi
going through banana example
The file was modifiedTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
The file was modifiedscripts/tmap-tm (diff)
The file was modifiedTransportMaps/Diagnostics/Validators.py (diff)
The file was modifiedTransportMaps/Functionals/LinearSpanApproximationBase.py (diff)
The file was modifiedTransportMaps/Defaults.py (diff)
The file was modifiedTransportMaps/Functionals/AlgebraicLinearSpanApproximations.py (diff)
The file was modifiedTransportMaps/Algorithms/Adaptivity/RegressionAdaptivity.py (diff)
Commit fbb36fdab34f2f19fdf3350f086001059e4dc3ff by dabi
working on adaptivity on banana
The file was modifiedscripts/tmap-tm (diff)
The file was modifiedTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
The file was modifiedTransportMaps/Functionals/AlgebraicLinearSpanApproximations.py (diff)
The file was modifiedTransportMaps/Functionals/ParametricFunctionApproximationBase.py (diff)
Commit d6388446fd5406cae4c81081161fc230c311e85b by dabi
adaptivity on banana almost work
The file was modifiedTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
The file was modifiedTransportMaps/Algorithms/Adaptivity/RegressionAdaptivity.py (diff)
The file was modifiedTransportMaps/Maps/TriangularTransportMaps.py (diff)
The file was modifiedTransportMaps/Defaults.py (diff)
The file was modifiedTransportMaps/Functionals/MonotonicFunctionApproximations.py (diff)
The file was modifiedTransportMaps/tests/test_transportmap_distributions.py (diff)
The file was modifiedscripts/tmap-tm (diff)
The file was modifiedTransportMaps/tests/test_kl_divergence.py (diff)
Commit af282c11c8095637c110d4682f595fe0af0caf29 by dabi
adaptivity works on banana. a lot to do yet...
The file was modifiedTransportMaps/Diagnostics/Validators.py (diff)
The file was modifiedTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
The file was modifiedTransportMaps/Maps/TriangularTransportMapBase.py (diff)
The file was modifiedTransportMaps/Defaults.py (diff)
The file was modifiedTransportMaps/Maps/TriangularTransportMaps.py (diff)
Commit 6a9c18d0b06d4194392dfd9a03f921188f38462e by dabi
improving parallelization
The file was modifiedTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
The file was modifiedTransportMaps/CLI/PostprocessBase.py (diff)
The file was modifiedscripts/tmap-tm (diff)
Commit a877828c67427fdac8e1d35bfd5907539069d9db by dabi
splitted first variation computation for better parallelization
The file was modifiedTransportMaps/Routines.py (diff)
The file was modifiedTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
Commit 0111a206512a53fc06ed508b7ee79ed25b7360d1 by dabi
adaptivity works on banana without hyper
The file was modifiedscripts/tmap-tm (diff)
The file was modifiedTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
The file was modifiedTransportMaps/Diagnostics/Validators.py (diff)
Commit a0e98d811f87cab1737d27fd2101d6efafa05a25 by dabi
working on low-rank approximation of Hessians
The file was addedTransportMaps/RandomizedLinearAlgebra/RandomizedLinearAlgebra.py
The file was addedTransportMaps/RandomizedLinearAlgebra/__init__.py
The file was modifiedTransportMaps/__init__.py (diff)
The file was addedTransportMaps/tests/test_rla.py
Commit 1cc7c7bca849c0291ff2fc870f5e8314896aaf73 by dabi
working on laplace approximation for Bayesian inverse problems, where
one has access only on the action of the Hessian
The file was modifiedTransportMaps/Routines.py (diff)
The file was modifiedscripts/tmap-laplace (diff)
The file was modifiedTransportMaps/Maps/MapBase.py (diff)
The file was modifiedTransportMaps/Maps/TriangularTransportMapBase.py (diff)
The file was modifiedTransportMaps/tests/test_laplace.py (diff)
Commit 052a53fa115a7c467d6433ff9fffbdcdb384473d by dabi
working on low-rank approximation of covariance in bayesian problem
The file was modifiedTransportMaps/Routines.py (diff)
The file was modifiedTransportMaps/tests/test_laplace.py (diff)
The file was modifiedTransportMaps/RandomizedLinearAlgebra/RandomizedLinearAlgebra.py (diff)
Commit 79c1301ffa7118c75a6d65efd20c8eeeeab8b3b9 by dabi
working on low-rank approximation
The file was modifiedTransportMaps/tests/test_laplace.py (diff)
The file was modifiedTransportMaps/Routines.py (diff)
Commit 2eae6b39d75bd4f25dae2382e1425850adb88ad9 by dabi
added logging information in postprocessing script
The file was modifiedTransportMaps/CLI/PostprocessBase.py (diff)
Commit 5fc966b8c5f8d043ae7a93c23e01346aab4a3df7 by dabi
low-rank Laplace approximation works
The file was modifiedscripts/tmap-laplace (diff)
The file was modifiedTransportMaps/Likelihoods/LikelihoodBase.py (diff)
The file was modifiedTransportMaps/Routines.py (diff)
The file was modifiedTransportMaps/Algorithms/Adaptivity/RegressionAdaptivity.py (diff)
Commit 46ed5ba33095acf30dcb1e7fc1d611ef2e52a6d8 by dabi
applying Laplace to EIT
The file was modifiedTransportMaps/Routines.py (diff)
The file was modifiedTransportMaps/Maps/MapBase.py (diff)
The file was addedExamples/research/EIT/NoElectrode/whiten.py
The file was modifiedExamples/research/EIT/NoElectrode/test_distribution.py (diff)
The file was modifiedExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.py (diff)
The file was modifiedTransportMaps/Likelihoods/LikelihoodBase.py (diff)
The file was modifiedTransportMaps/Distributions/TransportMapDistributions.py (diff)
Commit 3c4b5b772eca48ab6e6a3f38d0aa017c3cb49ee1 by dabi
working on composition of Likelihood with maps
The file was modifiedTransportMaps/Routines.py (diff)
Commit 421d240b7bd822e81a33eb7e71be2167f2324444 by dabi
working on composition of Likelihood with maps
The file was modifiedTransportMaps/Functionals/ParametricFunctionApproximationBase.py (diff)
The file was modifiedExamples/research/EIT/NoElectrode/whiten.py (diff)
The file was modifiedTransportMaps/Functionals/FunctionBase.py (diff)
Commit 0c9eaa3fae6f73a45bd0c4ba008980323f89047d by dabi
composition of functions and map now is possible. working on laplace of
eit
The file was modifiedTransportMaps/Functionals/FunctionBase.py (diff)
The file was modifiedTransportMaps/Maps/MapBase.py (diff)
The file was modifiedTransportMaps/Maps/FrozenTriangularTransportMaps.py (diff)
The file was modifiedTransportMaps/RandomizedLinearAlgebra/RandomizedLinearAlgebra.py (diff)
Commit 74481fdf5bf78e43f94ffdb53e323f6ef6db5277 by dabi
working on laplace approximation of EIT
The file was modifiedExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.py (diff)
The file was modifiedExamples/research/EIT/NoElectrode/test_distribution.py (diff)
The file was addedExamples/research/EIT/NoElectrode/postprocess-plotting.py
The file was modifiedTransportMaps/RandomizedLinearAlgebra/RandomizedLinearAlgebra.py (diff)
Commit 1d7f4fd1dcdfa9a8109e98faf16148f1011e3966 by dabi
debugging action of Hessian
The file was modifiedExamples/research/EIT/NoElectrode/Adjoint-test-field.py (diff)
The file was modifiedExamples/research/EIT/NoElectrode/GaussianFieldDataGeneration.py (diff)
The file was modifiedExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.py (diff)
The file was modifiedExamples/research/EIT/NoElectrode/test_distribution.py (diff)
Commit 1f0be00895048d30a9f612df6f63607c4e089c15 by dabi
checking hessian action..
The file was modifiedExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.py (diff)
The file was modifiedExamples/research/EIT/NoElectrode/Adjoint-test-field.py (diff)
Commit 26ecb870671fa3530590a938ffe58e5d2e449870 by dabi
working on finite difference test for Hessian
The file was modifiedExamples/research/EIT/NoElectrode/Adjoint-test-field.py (diff)
The file was modifiedExamples/research/EIT/NoElectrode/test_distribution.py (diff)
Commit 45e4b45fed1914c006ed8c29a3e310d046bcc74d by dabi
checking Hessian for distribution
The file was modifiedExamples/research/EIT/NoElectrode/test_distribution.py (diff)
Commit 8754c010c04ef0d7e08c06bf13298a3dadc2ad7f by dabi
fixed withening script. Now action of Hessian works with MPI
The file was modifiedTransportMaps/Maps/MapBase.py (diff)
The file was modifiedExamples/research/EIT/NoElectrode/whiten.py (diff)
The file was modifiedExamples/research/EIT/NoElectrode/test_distribution.py (diff)
Commit 53d914e64bd369afd1015624f84080f676ecfbfd by dabi
working on EIT adaptivity
The file was modifiedTransportMaps/Routines.py (diff)
The file was modifiedExamples/research/EIT/NoElectrode/GaussianFieldDataGeneration.py (diff)
The file was modifiedTransportMaps/RandomizedLinearAlgebra/RandomizedLinearAlgebra.py (diff)
The file was modifiedscripts/tmap-tm (diff)
The file was modifiedExamples/research/EIT/NoElectrode/postprocess-plotting.py (diff)
The file was modifiedExamples/research/EIT/NoElectrode/test_distribution.py (diff)
The file was modifiedTransportMaps/Likelihoods/LikelihoodBase.py (diff)
The file was modifiedTransportMaps/Distributions/TransportMapDistributions.py (diff)
The file was modifiedExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.py (diff)
The file was modifiedTransportMaps/Maps/FullTransportMaps.py (diff)
The file was modifiedTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
Commit f83a259c843b00c21037320af6cce6dd3f633767 by dabi
added missing functions to LinearTransportMap. Added unit tests for it
The file was modifiedTransportMaps/tests/test_transportmaps.py (diff)
The file was modifiedTransportMaps/FiniteDifference.py (diff)
The file was modifiedTransportMaps/Maps/FullTransportMaps.py (diff)
The file was modifiedscripts/tmap-tm (diff)
Commit b88e79f9296040875afbe97f9edd87c8f3ee8c4d by dabi
modified caching of EIT solutions so that the cache is now pickable.
The file was modifiedExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.py (diff)
The file was modifiedExamples/research/EIT/NoElectrode/Adjoint-test-field.py (diff)
Commit 24e6987e4d8e66a2bc7cf61afff3c611cf631bf8 by dabi
added verbosity option in adaptivity algorithms and fixed bug in action
of the Hessia of the kl divergence
The file was modifiedscripts/tmap-tm (diff)
The file was modifiedTransportMaps/Maps/FullTransportMaps.py (diff)
The file was modifiedTransportMaps/Routines.py (diff)
The file was modifiedTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
Commit e453c7602953f95bd6a7b4d9c947fe205e8ca0af by dabi
added intermediate storage capability for adaptivity
The file was modifiedTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
The file was modifiedscripts/tmap-tm (diff)
The file was modifiedTransportMaps/Misc.py (diff)
Commit 341c70ae2bf51f3a9ad094b4597a2fedef0de58d by dabi
added output for lower and upper bounds in saa
The file was modifiedTransportMaps/Diagnostics/Validators.py (diff)
Commit f12418030af0de2a720a3573485d057e11694bf6 by dabi
fixed bug in tmap-tm and in test_distribution.py for EIT
The file was modifiedExamples/research/EIT/NoElectrode/submit_slurm.sh (diff)
The file was modifiedExamples/research/EIT/NoElectrode/test_distribution.py (diff)
The file was modifiedscripts/tmap-tm (diff)
Commit e4e346a2894a5f5ca16449ecf7c4c7b5c6567f38 by dabi
added distributed sampling for MC sampling in minimize_kl_divergence
functions for both forward and inverse maps. Unittests to be run
The file was modifiedTransportMaps/Distributions/TransportMapDistributions.py (diff)
The file was modifiedTransportMaps/Maps/TransportMapBase.py (diff)
The file was modifiedTransportMaps/Distributions/FrozenDistributions.py (diff)
The file was modifiedTransportMaps/Misc.py (diff)
The file was modifiedTransportMaps/Functionals/MonotonicFunctionApproximations.py (diff)
The file was modifiedTransportMaps/Maps/TriangularTransportMapBase.py (diff)
The file was modifiedTransportMaps/tests/TestFunctions.py (diff)
The file was modifiedTransportMaps/Distributions/DistributionBase.py (diff)
The file was modifiedTransportMaps/Diagnostics/Validators.py (diff)
Commit 289889ef7c6704ffdd96912d3682d0c6465d6aa8 by dabi
fixed sampling for inverse maps from samples (disabled distributed
sampling there)
The file was modifiedTransportMaps/Functionals/MonotonicFunctionApproximations.py (diff)
The file was modifiedTransportMaps/Maps/TriangularTransportMapBase.py (diff)
Commit 80d82d4e4fdf0ab31b3bb6ebba8e58f41e49bad9 by dabi
fixed distributed sampling for linear span kl minimization
The file was modifiedTransportMaps/Maps/TriangularTransportMaps.py (diff)
Commit c53f8325864c09f7697a737c7711fa54b73f1702 by dabi
fixed action Hessian with regularization
The file was modifiedTransportMaps/Maps/TransportMapBase.py (diff)
Commit c9c0720174bda6718b183da874b9bdd4b7515a95 by dabi
simplified regularization of action hessian regularization
The file was modifiedTransportMaps/Maps/TransportMapBase.py (diff)
Commit 51c65479c1ab61273d427007e592680e5966424f by dabi
fixed relative tolerance in validator
The file was modifiedTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
The file was modifiedTransportMaps/Maps/TransportMapBase.py (diff)
The file was modifiedscripts/tmap-tm (diff)
The file was modifiedTransportMaps/Diagnostics/Validators.py (diff)
Commit acb65c3dca1f3790e3679df972ac065c9075f3c0 by dabi
fixed relative tolerance in validator
The file was modifiedTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
The file was modifiedTransportMaps/Diagnostics/Validators.py (diff)
Commit af0dacbcb4fdf066cf9b2ab3c2d032d95f857f37 by dabi
remove unnecessary output form EIT
The file was modifiedExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.py (diff)
Commit 1b593f49fd021a56a827e39993d1d5e720e0ddc2 by dabi
changed active variable indicator to E[|x|]
The file was modifiedDocs/source/example-BOD-4d.ipynb (diff)
The file was modifiedTransportMaps/Misc.py (diff)
The file was modifiedTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
Commit 58ba5a20cbc02d540f9e63973412fc4b254233ce by rebeccae.morrison
tryna generate non-gaussian data
The file was addedExamples/research/sparsity/data_samples/generate_npn_data.py
Commit a00fae250c9debe84b291d7cc2d20ad8ec45242f by dabi
working on reload feature for tmap-tm
The file was modifiedExamples/research/EIT/DirichletToNeumann/main.py (diff)
The file was modifiedscripts/tmap-tm (diff)
Commit 22e8151dd8c569268ff8f7cd0c157429bf15bfd0 by dabi
reloading done for first variation adaptivity. to be checked in other
kinds of algorithms callable by tmap-tm
The file was modifiedTransportMaps/Maps/TriangularTransportMapBase.py (diff)
The file was modifiedTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
The file was modifiedscripts/tmap-tm (diff)
Commit 04ade86415285c6f6251d6876a8bbfb9cb3f4551 by dabi
added some output to First variation algorithm
The file was modifiedTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
The file was modifiedExamples/research/EIT/NoElectrode/submit_slurm.sh (diff)
The file was modifiedTransportMaps/Distributions/TransportMapDistributions.py (diff)
Commit cb83b0a022b7efe2c0639e6a7eb88f7a31a3f16d by dabi
fixed restarting and grad_x for target in EIT
The file was modifiedscripts/tmap-tm (diff)
The file was modifiedDocs/source/example-sequential-stocvol-6d.ipynb (diff)
The file was modifiedTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
The file was modifiedTransportMaps/Maps/FullTransportMaps.py (diff)
Commit 8caf7e3722ed86b8d8a6191281e004fe9fe9c024 by dabi
added field full_basis_list to function approximations, to be used in
adaptivity
The file was modifiedTransportMaps/Functionals/LinearSpanApproximationBase.py (diff)
The file was modifiedTransportMaps/Functionals/ParametricFunctionApproximationBase.py (diff)
The file was modifiedTransportMaps/Defaults.py (diff)
The file was modifiedTransportMaps/tests/test_transportmaps.py (diff)
Commit 7951a0010b504cbeb123df42cf2355f4889481ad by dabi
fixed adaptivity accordingly to previous full_basis_list at the function
approximation level instead of transport map level
The file was modifiedTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
The file was modifiedTransportMaps/Functionals/AlgebraicLinearSpanApproximations.py (diff)
Commit baa85fe3d505a0ab0fcc7731d1690df82d75a87f by rebeccae.morrison
running aerostruct and copula data
The file was modifiedTransportMaps/Functionals/ProductDistributionParametricPullbackComponentFunctionBase.py (diff)
The file was removedExamples/research/sparsity/data_samples/generate_npn_data.py
The file was modifiedrequirements.txt (diff)
The file was modifiedTransportMaps/Maps/TransportMapBase.py (diff)
The file was addedExamples/research/sparsity/algorithm/run_sing_aerostruct.py
The file was modifiedTransportMaps/Algorithms/SparsityIdentification/GeneralizedPrecision.py (diff)
The file was modifiedExamples/research/sparsity/algorithm/run_sing_genes.py (diff)
The file was addedExamples/research/sparsity/data_samples/copula_data/generate_npn_data.py
The file was modifiedTransportMaps/Distributions/TransportMapDistributions.py (diff)
The file was modifiedTransportMaps/Samplers/MarkovChainSamplers.py (diff)
The file was addedExamples/research/sparsity/algorithm/run_sing_copula.py
The file was modifiedTransportMaps/Algorithms/SparsityIdentification/SparsityIdentificationNonGaussian.py (diff)
Commit b03706acae886fb5850035a625ade5d66d39a4a3 by rebeccae.morrison
committing data samples for copula data
The file was addedExamples/research/sparsity/data_samples/copula_data/power_data-s-p1.txt
The file was addedExamples/research/sparsity/data_samples/copula_data/power_data-s-3.txt
The file was addedExamples/research/sparsity/data_samples/copula_data/power_omega-s-p5.txt
The file was addedExamples/research/sparsity/data_samples/copula_data/cdf_omega.txt
The file was addedExamples/research/sparsity/data_samples/copula_data/power_omega-s-1.txt
The file was addedExamples/research/sparsity/data_samples/copula_data/power_omega.txt
The file was addedExamples/research/sparsity/data_samples/copula_data/cdf_data.txt
The file was addedExamples/research/sparsity/data_samples/copula_data/power_omega-s-p1.txt
The file was addedExamples/research/sparsity/data_samples/copula_data/power_data-s-p75.txt
The file was addedExamples/research/sparsity/data_samples/copula_data/power_data-s-1.txt
The file was addedExamples/research/sparsity/data_samples/copula_data/power_omega-s-p75.txt
The file was addedExamples/research/sparsity/data_samples/copula_data/power_data-s-p5.txt
The file was addedExamples/research/sparsity/data_samples/copula_data/power_omega-s-3.txt
The file was addedExamples/research/sparsity/data_samples/copula_data/power_data.txt
Commit ec67156ee16802b789f3f98718b3d9bbbac1ec01 by dabi
fixed first variation computation
The file was modifiedTransportMaps/Routines.py (diff)
The file was modifiedExamples/research/EIT/NoElectrode/submit_slurm.sh (diff)
Commit 05b11756355f3a43f4870b89f38cdf98788063a6 by dabi
added plot sample for post process in EIT
The file was modifiedExamples/research/EIT/NoElectrode/postprocess-plotting.py (diff)
Commit 12fb2028f39abc7b50a27bc40c2ab6a80de2cc4c by rebeccae.morrison
added a non-gaussian chain dataset
The file was addedExamples/research/sparsity/algorithm/run_sing_xstar.py
Commit 8eb49dc9068ebe02ba37f50f68e4801f29fff413 by dabi
added full_basis_list feature to xml map structure loading
The file was modifiedTransportMaps/Functionals/ParametricFunctionApproximationBase.py (diff)
The file was modifiedTransportMaps/tests/xml/maps/TotalOrdIntExpDiagonalMap_5d.xml (diff)
The file was modifiedTransportMaps/Functionals/LinearSpanApproximationBase.py (diff)
The file was modifiedTransportMaps/XML/schema/map.xsd (diff)
The file was modifiedTransportMaps/Functionals/MonotonicFunctionApproximations.py (diff)
The file was modifiedTransportMaps/Maps/TriangularTransportMapBase.py (diff)
Commit 63affa5a3a3791b50cb0325ef21e2a38446f4dfe by dabi
fixed full_basis_list to save in memory allocation
The file was modifiedTransportMaps/Functionals/LinearSpanApproximationBase.py (diff)
Commit 77519092cd90b711caaea37e1e2d179bea767cd8 by rebeccae.morrison
minor testing datasets changes
The file was modifiedExamples/research/sparsity/algorithm/run_sing_xstar.py (diff)
The file was modifiedExamples/research/sparsity/algorithm/run_sing_aerostruct.py (diff)
The file was modifiedExamples/research/sparsity/algorithm/run_sing_copula.py (diff)
Commit 033810aaa1216b69df5f3b16b5d555528e20591a by rebeccae.morrison
check for product distribution
The file was modifiedTransportMaps/Maps/MapBase.py (diff)
Commit a05f61e18bbb141f5ffb4287bb5bc6d0f98296a9 by rebeccae.morrison
removed matplotlib from imports
The file was modifiedTransportMaps/Algorithms/SparsityIdentification/SparsityIdentificationNonGaussian.py (diff)
The file was modifiedExamples/research/sparsity/algorithm/run_sing_aerostruct.py (diff)
The file was modifiedExamples/research/sparsity/algorithm/run_sing_xstar.py (diff)
The file was modifiedrequirements.txt (diff)
The file was modifiedsetup.py (diff)
The file was modifiedTransportMaps/Algorithms/SparsityIdentification/NodeOrdering.py (diff)
Commit dafebe47bd681f2a31fd7ffc7d04c572a3b21e63 by dabi
changed googleanalytics requirements
The file was modifiedsetup.py (diff)
The file was modifiedrequirements-SPHINX.txt (diff)
Commit 3f120615511a6ed7bb556b307db17e3a2771f91d by rebeccae.morrison
starting jupyter notebook for sing
The file was modifiedTransportMaps/Maps/MapBase.py (diff)
The file was modifiedTransportMaps/Functionals/ProductDistributionParametricPullbackComponentFunctionBase.py (diff)
The file was addedDocs/source/examples-inverse-sparsity-identification.ipynb
The file was modifiedrequirements.txt (diff)
Commit 5ab17793c875fc4776c527b830a388639531ecf6 by rebeccae.morrison
looking at copula data inverse covariance
The file was modifiedExamples/research/sparsity/algorithm/run_sing_copula.py (diff)
Commit 78edbff3371b63fe9ee9b6f98d28a552791d68ae by dabi
working on coarser test case
The file was modifiedExamples/research/EIT/NoElectrode/test_distribution.py (diff)
The file was addedscripts/tmap-load-dill
The file was modifiedTransportMaps/RandomizedLinearAlgebra/RandomizedLinearAlgebra.py (diff)
The file was modifiedscripts/tmap-max-likelihood (diff)
The file was modifiedExamples/research/EIT/NoElectrode/GaussianFieldDataGeneration.py (diff)
Commit 1f069c63c808bf1bd5027753a1c0f25e8765ae6e by dabi
fixed several bugs in adaptivity and tests
The file was modifiedTransportMaps/Functionals/AlgebraicLinearSpanApproximations.py (diff)
The file was modifiedTransportMaps/Diagnostics/Validators.py (diff)
The file was modifiedTransportMaps/FiniteDifference.py (diff)
The file was modifiedsetup.py (diff)
The file was modifiedTransportMaps/tests/test_kl_divergence.py (diff)
The file was modifiedTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
Commit 179a9487918b6c8b2be032406101181c580726cb by dabi
fixed get state in first variation builder
The file was modifiedTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
Commit 9d127c69f3f4dcb6f1d99130cb2f251a20aa3a10 by dabi
added line search options in tmap-tm
The file was modifiedscripts/tmap-tm (diff)
The file was modifiedTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
The file was modifiedscripts/tmap-load-dill (diff)
Commit fc26a7e58d9a31197572741c452723fe89f103ef by dabi
fixed kladaptivity serialization and regression regularization
The file was modifiedTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
The file was modifiedTransportMaps/Functionals/ParametricFunctionApproximationBase.py (diff)
Commit 6c0db991f1d196642b9d28773c851de32da28dbf by dabi
fixed gx_gt_kl batched evaluation
The file was modifiedTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
Commit d4e4a188b05bef4d0f367eecba453f36759c481c by rebeccae.morrison
added sing notebook example
The file was modifiedrequirements-SPHINX.txt (diff)
The file was modifiedDocs/source/examples-inverse-sparsity-identification.ipynb (diff)
The file was modifiedTransportMaps/Algorithms/SparsityIdentification/RegularizedMap.py (diff)
The file was modifiedTransportMaps/Algorithms/SparsityIdentification/SparsityIdentificationNonGaussian.py (diff)
The file was modifiedsetup.py (diff)
Commit 43f45c82f42b30fb61f83582e5e7a19fbc7d381b by dabi
fixing adaptivity here and there..
The file was modifiedTransportMaps/Algorithms/SequentialInference/NonLinearSequentialInference.py (diff)
The file was modifiedTransportMaps/Distributions/Examples/StochasticVolatility/StocVolHyperDistributions.py (diff)
The file was modifiedscripts/tmap-tm (diff)
The file was modifiedTransportMaps/Maps/TriangularTransportMapBase.py (diff)
The file was modifiedTransportMaps/Functionals/LinearSpanApproximationBase.py (diff)
The file was modifiedTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
The file was modifiedTransportMaps/Diagnostics/Validators.py (diff)
The file was modifiedTransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.py (diff)
The file was modifiedTransportMaps/Maps/TransportMapBase.py (diff)
Commit 0145b9788f5bafabb3f0d27a062d78fb4c2d7743 by dabi
integrated documentation for SING algorithm
The file was modifiedrequirements-SPHINX.txt (diff)
The file was modifiedDocs/source/examples-transport-from-samples.rst (diff)
The file was modifiedDocs/source/refs.bib (diff)
The file was removedDocs/source/examples-inverse-sparsity-identification.ipynb
The file was addedDocs/source/example-inverse-sparsity-identification.ipynb
Commit c78ed287354896cb4e99bf84aff597937b4652ff by dabi
added postprocessing functionalities for adaptivity
The file was modifiedTransportMaps/CLI/__init__.py (diff)
The file was modifiedscripts/tmap-tm (diff)
The file was modifiedTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
The file was modifiedscripts/tmap-sequential-tm (diff)
The file was modifiedExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.py (diff)
The file was modifiedTransportMaps/Diagnostics/Validators.py (diff)
The file was modifiedTransportMaps/CLI/PostprocessBase.py (diff)
The file was addedTransportMaps/CLI/AdaptivityPostprocessBase.py
The file was modifiedExamples/research/EIT/NoElectrode/test_distribution.py (diff)
The file was modifiedExamples/research/EIT/NoElectrode/GaussianFieldDataGeneration.py (diff)
The file was modifiedTransportMaps/Algorithms/SequentialInference/NonLinearSequentialInference.py (diff)
The file was modifiedExamples/research/EIT/NoElectrode/postprocess-plotting.py (diff)
The file was addedscripts/tmap-adaptivity-postprocess
The file was modifiedsetup.py (diff)
Commit 105380bd5a6b6f35005a3fabeb7bde6198f53970 by dabi
added double circle phantom
The file was modifiedscripts/tmap-laplace (diff)
The file was modifiedExamples/research/EIT/NoElectrode/GaussianFieldDataGeneration.py (diff)
The file was modifiedscripts/tmap-tm (diff)
The file was modifiedExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.py (diff)
The file was modifiedscripts/tmap-load-dill (diff)
Commit 6ec00985fbf262639d1412234f0241344fb5551a by dabi
fixed store function in tmap-tm
The file was modifiedscripts/tmap-tm (diff)
Commit 5cd5a8f7fc0392c4c6570182bc5c20ba7aa17eba by dabi
added argument for line search delta
The file was modifiedExamples/research/EIT/NoElectrode/test_distribution.py (diff)
The file was modifiedTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
Commit dff441ce07e6cc88c02c923c9334b49cd8cdc243 by dabi
added delta parameter for line search
The file was modifiedscripts/tmap-tm (diff)
The file was modifiedExamples/research/EIT/NoElectrode/test_distribution.py (diff)
Commit 5e7c0b2ce62e3a5b380aa07b7160de6eb91293e2 by dabi
fixed documentation SING
The file was modifiedTransportMaps/Algorithms/SparsityIdentification/SparsityIdentificationNonGaussian.py (diff)
Commit ce7a8f505fba4308e4e96e5e53f80ccf380eb2f4 by dabi
fixing unit tests;
The file was modifiedTransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.py (diff)
The file was modifiedTransportMaps/tests/test_distributions.py (diff)
The file was modifiedTransportMaps/tests/test_sequential_inference.py (diff)
The file was modifiedTransportMaps/tests/test_L2_misfit.py (diff)
The file was modifiedTransportMaps/tests/test_rla.py (diff)
The file was modifiedTransportMaps/tests/test_transportmap_distributions.py (diff)
The file was modifiedTransportMaps/Algorithms/SequentialInference/NonLinearSequentialInference.py (diff)
The file was modifiedTransportMaps/tests/test_functions.py (diff)
Commit be863aa5bb7d71162c691e9bc54a7cf4d14e2494 by dabi
fixed laplace approximation starting point
The file was modifiedTransportMaps/Routines.py (diff)
Commit bae5c77867e94d388e37699707ac87a4833a5b76 by dabi
documenting fv adaptivity
The file was modifiedExamples/research/EIT/NoElectrode/postprocess-plotting.py (diff)
The file was modifiedExamples/research/EIT/NoElectrode/test_distribution.py (diff)
The file was modifiedTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
Commit 26460f51d3478a4ac98a58d08619d3102d4009e0 by dabi
preparing release v2.0b0
The file was modifiedTransportMaps/Distributions/Examples/ScalarLinearGaussMarkovProcess/Distributions.py (diff)
The file was modifiedExamples/research/adaptivity/AdaptivityRoutines.py (diff)
The file was modifiedExamples/research/conditionedDiffusion/ConditionedDiffusion-Composition-Postprocess.py (diff)
The file was modifiedDocs/conf3/conf.py (diff)
The file was modifiedTransportMaps/tests/TestFunctions.py (diff)
The file was modifiedTransportMaps/Maps/SimpleTransportMaps.py (diff)
The file was modifiedTransportMaps/CLI/AdaptivityPostprocessBase.py (diff)
The file was modifiedTransportMaps/Distributions/Decomposable/__init__.py (diff)
The file was modifiedTransportMaps/__init__.py (diff)
The file was modifiedExamples/research/conditionedDiffusion/ConditionedDiffusion-Composition-Construction.py (diff)
The file was modifiedExamples/research/EIT/NoElectrode/NoElectrodeEITDistributions.py (diff)
The file was modifiedTransportMaps/Distributions/FrozenDistributions.py (diff)
The file was modifiedTransportMaps/Algorithms/__init__.py (diff)
The file was modifiedTransportMaps/tests/test_all.py (diff)
The file was modifiedExamples/research/conditionedDiffusion/DataLoading.py (diff)
The file was modifiedTransportMaps/Maps/Decomposable/SequentialInferenceMaps.py (diff)
The file was modifiedExamples/research/EIT/NoElectrode/GaussianFieldDataGeneration.py (diff)
The file was modifiedTransportMaps/Functionals/LinearSpanApproximationBase.py (diff)
The file was modifiedTransportMaps/Maps/TransportMapBase.py (diff)
The file was modifiedTransportMaps/Densities/Densities.py (diff)
The file was modifiedExamples/research/adaptivity/FirstVariationAdaptivity-SensitivityTest.py (diff)
The file was modifiedTransportMaps/Samplers/IndependentSamplers.py (diff)
The file was modifiedExamples/research/adaptivity/FirstVariationAdaptivity-SensitivityTest-Postprocess.py (diff)
The file was modifiedTransportMaps/Algorithms/SparsityIdentification/SparsityIdentificationNonGaussian.py (diff)
The file was modifiedTransportMaps/Optimization/Optimizers.py (diff)
The file was modifiedExamples/stable/TestDistributions/Regression.py (diff)
The file was modifiedTransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.py (diff)
The file was modifiedExamples/research/conditionedDiffusion/ConditionedDiffusion.py (diff)
The file was modifiedTransportMaps/Routines.py (diff)
The file was modifiedExamples/old/StochasticVolatility/DataGeneration.py (diff)
The file was modifiedTransportMaps/Distributions/DistributionBase.py (diff)
The file was modifiedTransportMaps/Distributions/TransportMapDistributions.py (diff)
The file was modifiedTransportMaps/Functionals/FrozenMonotonicFunctions.py (diff)
The file was modifiedTransportMaps/Distributions/Examples/RailwayVehicleDynamics/Coradia175/Coradia175VehicleStateSpace.py (diff)
The file was modifiedTransportMaps/tests/test_distributions.py (diff)
The file was modifiedExamples/research/LogGaussianCoxProcess/Postprocess-unbiased-mean-std.py (diff)
The file was modifiedExamples/research/sparsity/monte_carlo_studies/MC_1StepAlgs/SparsityIdentificationNonGaussian.py (diff)
The file was modifiedTransportMaps/RandomizedLinearAlgebra/RandomizedLinearAlgebra.py (diff)
The file was modifiedTransportMaps/tests/test_L2_misfit.py (diff)
The file was modifiedExamples/research/conditionedDiffusion/ConditionedDiffusion-DataGeneration.py (diff)
The file was modifiedTransportMaps/tests/test_xml.py (diff)
The file was modifiedscripts/tmap-laplace (diff)
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The file was modifiedExamples/research/sparsity/monte_carlo_studies/SING_Convergence/SparsityIdentificationNonGaussian.py (diff)
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The file was modifiedExamples/stable/StochasticVolatility/PlotExchanges.py (diff)
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The file was modifiedTransportMaps/Algorithms/SequentialInference/SequentialInferenceBase.py (diff)
The file was modifiedExamples/stable/BODmodel/DataGeneration.py (diff)
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The file was modifiedscripts/tmap-postprocess (diff)
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The file was modifiedTransportMaps/CLI/PostprocessBase.py (diff)
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The file was modifiedTransportMaps/Samplers/SamplerBase.py (diff)
The file was modifiedExamples/research/LogGaussianCoxProcess/DataGeneration.py (diff)
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The file was modifiedTransportMaps/Functionals/ProductDistributionParametricPullbackComponentFunctionBase.py (diff)
The file was modifiedExamples/research/LogGaussianCoxProcess/Postprocess-mean-std.py (diff)
The file was modifiedsetup.py (diff)
The file was modifiedTransportMaps/Densities/Inference/InferenceBase.py (diff)
The file was modifiedExamples/old/StochasticVolatility/Postprocess-plotting.py (diff)
The file was modifiedTransportMaps/Algorithms/SequentialInference/__init__.py (diff)
The file was modifiedTransportMaps/tests/test_kl_minimization.py (diff)
The file was modifiedExamples/research/QMC_Shwab/DataLoading.py (diff)
The file was modifiedTransportMaps/CLI/SequentialPostprocessBase.py (diff)
The file was modifiedExamples/research/EIT/NoElectrode/ConstantFieldDataGeneration.py (diff)
The file was modifiedExamples/stable/cluster/voyager/run_unit_tests.py (diff)
The file was modifiedTransportMaps/Likelihoods/__init__.py (diff)
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The file was modifiedTransportMaps/Distributions/Examples/InertialNavigationSystem/__init__.py (diff)
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The file was modifiedExamples/old/SequentialInference/Laplace-Postprocess.py (diff)
The file was modifiedTransportMaps/Algorithms/SequentialInference/NonLinearSequentialInference.py (diff)
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The file was modifiedExamples/research/conditionedDiffusion/ConditionedDiffusion-Laplace.py (diff)
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The file was modifiedExamples/old/StochasticVolatility/Postprocess-analysis.py (diff)
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The file was modifiedTransportMaps/Functionals/FunctionBase.py (diff)
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Commit 237c6610d9346262749d0140cfb764e9a195a5f6 by dabi
v2.0b0: ready for unit-testing
The file was modifiedTransportMaps/__init__.py (diff)
The file was modifiedrequirements-SPHINX.txt (diff)
Commit 10c960fe858ebd954e4151070cc03c9ef7842dc4 by dabi
fixed matplotlib dependence
The file was modifiedTransportMaps/CLI/AdaptivityPostprocessBase.py (diff)
Commit 3e87ed172f85538c4d0583157e08fef8716f3e86 by dabi
fixed process_time PyV3 PyV2
The file was modifiedTransportMaps/Misc.py (diff)
Commit 95668e33f8aa594d81af83ca7a1a1e62004a8a0b by dabi
fixed processtime name
The file was modifiedTransportMaps/Misc.py (diff)
Commit 02b47a6cacfff80806ca01e5bc95bdafc836c25b by dabi
fixing bugs for release
The file was modifiedTransportMaps/tests/test_kl_divergence.py (diff)
The file was modifiedTransportMaps/FiniteDifference.py (diff)
Commit b7d0bd4884558fb32eacee32d5f2b6a1ef22e7b5 by dabi
working to fix grax_gradt_kl
The file was modifiedTransportMaps/tests/test_transportmap_distributions.py (diff)
The file was modifiedTransportMaps/tests/test_kl_divergence.py (diff)
The file was modifiedTransportMaps/tests/test_transportmaps.py (diff)
The file was modifiedTransportMaps/Routines.py (diff)
Commit 9ae80e0a6691f6da0a601815978b8c1f7f83a4c7 by dabi
fixed grad_x of first variation
The file was modifiedTransportMaps/Maps/TriangularTransportMaps.py (diff)
The file was modifiedTransportMaps/tests/test_transportmap_distributions.py (diff)
The file was modifiedTransportMaps/Maps/TransportMapBase.py (diff)
The file was modifiedTransportMaps/Routines.py (diff)
The file was modifiedTransportMaps/tests/test_kl_divergence.py (diff)
Commit 3be147da5ed2983e06e40a35f81fc2cfd418c663 by rsb
subtract identity_coeffs + l1_reg to component kl
The file was modifiedTransportMaps/Functionals/MonotonicFunctionApproximations.py (diff)
Commit 4e021585f86f253e30561afea05d8a292a724f25 by dabi
removed dependency on FileNotFoundError for compatibility with py2
The file was modifiedscripts/tmap-load-dill (diff)
The file was modifiedscripts/tmap-sequential-tm (diff)
The file was modifiedscripts/tmap-tm (diff)
Commit eb34467549c4400e04194b2e07c883e8f22dbfa3 by dabi
fixed compatibility issue with py2
The file was modifiedscripts/tmap-tm (diff)
The file was modifiedscripts/tmap-sequential-tm (diff)
The file was modifiedscripts/tmap-load-dill (diff)
Commit 8b8cf41c49a48e4e822307d6a27980fc27f1db47 by dabi
removed unnecessary folders in Examples and updated mirroring script
The file was removedExamples/adaptivity/Postprocess.py
The file was removedExamples/rsb-test/example1.py
The file was addedExamples/research/rsb-test/example1.py
The file was modifiedupdate-public-mirror.sh (diff)
Commit d5c0cc0f4790dbb508013816628ab7e8ca0c726a by dabi
added algorithms documentation section
The file was modifiedDocs/source/index.rst (diff)
The file was addedDocs/source/algorithms.rst
Commit 46e44293747822bfb3425e2e495b26c5f30e40c3 by dabi
updated script for public mirroring
The file was modifiedupdate-public-mirror.sh (diff)
Commit 6dfc493b0462beb51c31bd4bca882b92ae27efd4 by dabi
throwing an error if ders!=[0,1] used in decoupled LinearSpan min_kl
problem
The file was modifiedTransportMaps/Functionals/MonotonicFunctionApproximations.py (diff)