Changes

Summary

  1. working on slurm submission (details)
  2. fixed tensordot in integrated squared. This saves memory and improves (details)
  3. modified runner (details)
  4. done with plots for the paper! (details)
  5. fixed plotting for 9000 steps (details)
  6. working on documentation of published data (details)
  7. done with documentation of results 945. Working on 9009 steps (details)
  8. adding results 9009 steps on documentation (details)
  9. added data and figures 9009 steps (details)
  10. postprocessing script now adding events on time series (details)
  11. done with documentation. todo: fix unittests (details)
  12. added cython dependency for pyhmc (details)
  13. attempt to fix pyhmc dependencies... (details)
  14. pyhmc is now optional (details)
  15. fixed external import in Samplers (details)
  16. fixed test_L2_misfit and test_scripts (details)
  17. fixed MarkovOneCompoent in test_distributions (details)
  18. fixed (1) test L2_min for integrated squared (2) sequential inference (details)
  19. fixed import of mpi_map (details)
  20. reduced order in test non linear sequential inference (details)
  21. updated documentation with optional requirement of pyhmc (details)
  22. removed Docs form MANIFEST.in (details)
  23. fixed gradient and hessian of inverse exponential map (details)
Commit 73e50062031c64b811b98cce1a3e93654b771b93 by dabi
working on slurm submission
The file was modifiedExamples/stable/StochasticVolatility/submit_slurm.sh (diff)
Commit ef6356098c50f6901ae78dd60cbfc4d26bd4273f by dabi
fixed tensordot in integrated squared. This saves memory and improves
performances
The file was modifiedExamples/stable/StochasticVolatility/postprocess-plotting.py (diff)
The file was modifiedTransportMaps/Functionals/AlgebraicLinearSpanApproximations.py (diff)
The file was modifiedExamples/stable/StochasticVolatility/runner.sh (diff)
The file was modifiedExamples/stable/StochasticVolatility/submit_slurm.sh (diff)
The file was modifiedExamples/stable/StochasticVolatility/runner.sh (diff)
Commit 4c1afc375886d0fbdf7ee89c7fecd2e6235d0f47 by dabi
done with plots for the paper!
The file was modifiedExamples/stable/StochasticVolatility/postprocess-plotting.py (diff)
The file was modifiedExamples/stable/StochasticVolatility/runner.sh (diff)
The file was modifiedTransportMaps/CLI/SequentialPostprocessBase.py (diff)
Commit 55722a065b41c432335efea78acdd5d2b5bde341 by dabi
fixed plotting for 9000 steps
The file was modifiedExamples/stable/StochasticVolatility/postprocess-plotting.py (diff)
Commit 76117414b03112574715d2072ef4e4a36537b2c6 by dabi
working on documentation of published data
The file was addedDocs/source/cs/stochastic-volatility/cs-stochastic-volatility.rst
The file was modifiedTransportMaps/External.py (diff)
The file was modifiedDocs/source/example-sequential-stocvol-6d.ipynb (diff)
The file was modifiedDocs/source/index.rst (diff)
The file was modifiedDocs/source/other-refs.bib (diff)
The file was addedDocs/source/case-studies.rst
Commit 58d1ba86a2b99c67964c671a325fb6eb67e0dfef by dabi
done with documentation of results 945. Working on 9009 steps
The file was addedDocs/source/cs/stochastic-volatility/Figures/DurbinData/posterior-data-predictive.svg
The file was addedDocs/source/cs/stochastic-volatility/Figures/DurbinData/filtering-marginals-timesteps-chunk-0.svg
The file was modifiedTransportMaps/__init__.py (diff)
The file was modifiedDocs/source/cs/stochastic-volatility/cs-stochastic-volatility.rst (diff)
The file was addedDocs/source/cs/stochastic-volatility/Figures/DurbinData/filtering-marginals-timesteps_mu-3d.svg
The file was addedDocs/source/cs/stochastic-volatility/Figures/DurbinData/filtering-marginals-timesteps_phi-3d.svg
The file was addedDocs/source/cs/stochastic-volatility/Figures/DurbinData/smoothing-marginals-timesteps-ntraj-1-chunk-0.svg
The file was addedDocs/source/cs/stochastic-volatility/Figures/DurbinData/smoothing-marginals-vs-unbiased-timesteps-chunk-0.svg
Commit 12a847dcca266840b1c299c8bd53d81b1b8ef604 by dabi
adding results 9009 steps on documentation
The file was modifiedDocs/source/cs/stochastic-volatility/cs-stochastic-volatility.rst (diff)
Commit 0b12db1441bdf8c6e136881169776e046f5b559c by dabi
added data and figures 9009 steps
The file was addedDocs/source/cs/stochastic-volatility/Figures/GBP-USD-cleared/smoothing-marginals-vs-unbiased-timesteps-chunk-1.svg
The file was modifiedDocs/source/cs/stochastic-volatility/cs-stochastic-volatility.rst (diff)
The file was addedDocs/source/cs/stochastic-volatility/Figures/GBP-USD-cleared/smoothing-marginals-vs-unbiased-timesteps-chunk-0.svg
The file was addedDocs/source/cs/stochastic-volatility/Figures/GBP-USD-cleared/smoothing-marginals-vs-unbiased-timesteps-chunk-2.svg
Commit 38a26bcaedeebf22da78a81d74cc9bffc02c25d3 by dabi
postprocessing script now adding events on time series
The file was modifiedExamples/stable/StochasticVolatility/postprocess-plotting.py (diff)
Commit e6a1644820c036cb510cf3dcf0e2ed9f9a481a54 by dabi
done with documentation. todo: fix unittests
The file was modifiedTransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py (diff)
The file was modifiedTransportMaps/Samplers/IndependentSamplers.py (diff)
The file was modifiedTransportMaps/Samplers/SamplerBase.py (diff)
The file was modifiedDocs/conf3/conf.py (diff)
The file was modifiedTransportMaps/_version.py (diff)
The file was modifiedTransportMaps/Samplers/Routines.py (diff)
The file was modifiedTransportMaps/Algorithms/__init__.py (diff)
The file was modifiedTransportMaps/Samplers/MarkovChainSamplers.py (diff)
Commit 32d0c4e3b2495e838d875484231c0e826f4ffc75 by dabi
added cython dependency for pyhmc
The file was modifiedsetup.py (diff)
Commit 89a588b3feaf7cc4f8837fcf06ed4aea5e8d6583 by dabi
attempt to fix pyhmc dependencies...
The file was modifiedrequirements.txt (diff)
The file was modifiedsetup.py (diff)
Commit 87e331375dc4e1d26468d4182c6b6aaf3c2b8542 by dabi
pyhmc is now optional
The file was modifiedTransportMaps/External.py (diff)
The file was modifiedTransportMaps/Samplers/MarkovChainSamplers.py (diff)
The file was modifiedsetup.py (diff)
The file was modifiedrequirements.txt (diff)
Commit 3ecfc008edb594db8e2cd3297a6de9eb395b76d3 by dabi
fixed external import in Samplers
The file was modifiedTransportMaps/Samplers/MarkovChainSamplers.py (diff)
Commit b5c1fcd3fc88752b9b15c8647115695dbe043b3e by dabi
fixed test_L2_misfit and test_scripts
The file was modifiedTransportMaps/tests/test_scripts.py (diff)
The file was modifiedscripts/tmap-tm (diff)
The file was modifiedTransportMaps/tests/test_L2_misfit.py (diff)
The file was modifiedTransportMaps/CLI/PostprocessBase.py (diff)
Commit f45c58588631c93dc8bf2382aedbefcff1341657 by dabi
fixed MarkovOneCompoent in test_distributions
The file was modifiedTransportMaps/tests/test_distributions.py (diff)
The file was modifiedTransportMaps/Diagnostics/Plotting.py (diff)
Commit 3f76c13071869c505688382164edde1e9bf3673b by dabi
fixed (1) test L2_min for integrated squared (2) sequential inference
accuracy
The file was modifiedTransportMaps/tests/test_sequential_inference.py (diff)
The file was modifiedTransportMaps/tests/test_L2_minimization.py (diff)
Commit 834d1868617578c8b8a8fc693a47244ce9bb9dba by dabi
fixed import of mpi_map
The file was modifiedTransportMaps/Misc.py (diff)
Commit bdc0b91b8632d1c694d6158e1f0cbd84cdef4357 by dabi
reduced order in test non linear sequential inference
The file was modifiedTransportMaps/tests/test_sequential_inference.py (diff)
Commit 5688ba5efd7da9c75c3175b1753e364977f1bd2f by dabi
updated documentation with optional requirement of pyhmc
The file was modifiedDocs/source/install.rst (diff)
The file was modifiedREADME.rst (diff)
Commit 1aa93ee0d95acca514340c930b4df0f84f5e5d51 by dabi
removed Docs form MANIFEST.in
The file was modifiedMANIFEST.in (diff)
Commit 901740157e3ac833c03f2ec450eab6eaeab2b763 by dabi
fixed gradient and hessian of inverse exponential map
The file was modifiedTransportMaps/Maps/FrozenTriangularTransportMaps.py (diff)