Started by upstream project "TransportMaps-private-hotfixes" build number 7 originally caused by: Started by BitBucket push by dabi86 Started by BitBucket push by dabi86 Building remotely on reynolds in workspace /jenkins/workspace/TransportMaps-private-hotfixes/COMPILER/gcc/MACHINE/reynolds/PYTHON_EXE/python3/VENV_SYS/virtualenv [WS-CLEANUP] Deleting project workspace... Cloning the remote Git repository Cloning repository git@bitbucket.org:dabi86/transportmaps-private.git > git init /jenkins/workspace/TransportMaps-private-hotfixes/COMPILER/gcc/MACHINE/reynolds/PYTHON_EXE/python3/VENV_SYS/virtualenv # timeout=10 Fetching upstream changes from git@bitbucket.org:dabi86/transportmaps-private.git > git --version # timeout=10 > git fetch --tags --progress git@bitbucket.org:dabi86/transportmaps-private.git +refs/heads/*:refs/remotes/origin/* > git config remote.origin.url git@bitbucket.org:dabi86/transportmaps-private.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url git@bitbucket.org:dabi86/transportmaps-private.git # timeout=10 Fetching upstream changes from git@bitbucket.org:dabi86/transportmaps-private.git > git fetch --tags --progress git@bitbucket.org:dabi86/transportmaps-private.git +refs/heads/*:refs/remotes/origin/* Checking out Revision ea44bf81de3bdb8ba3aabaebf0effdb7bfe8762b (refs/remotes/origin/hotfixes/master) > git config core.sparsecheckout # timeout=10 > git checkout -f ea44bf81de3bdb8ba3aabaebf0effdb7bfe8762b Commit message: "Merge branch 'hotfixes/documentation' into hotfixes/master" > git rev-list 8736807c0b80d1be611584e0822204a4b5d757b8 # timeout=10 [virtualenv] $ /bin/bash -xe /tmp/jenkins4165498089094129168.sh + bash -ex jenkins/test-source.sh + set -e ++ pwd + ROOT=/jenkins/workspace/TransportMaps-private-hotfixes/COMPILER/gcc/MACHINE/reynolds/PYTHON_EXE/python3/VENV_SYS/virtualenv ++ echo TransportMaps-private-hotfixes/COMPILER=gcc,MACHINE=reynolds,PYTHON_EXE=python3,VENV_SYS=virtualenv ++ cut -d / -f 1 + TEST_NAME=TransportMaps-private-hotfixes + ENV_NAME=venv_TransportMaps-private-hotfixes_python3 + VENV_OPTS= + [[ TransportMaps-private-hotfixes == *\m\p\i* ]] + TTYPE=serial + MPI=False ++ hostname + [[ reynolds == *\m\a\c\y\s* ]] ++ hostname + [[ reynolds == \m\a\c\y\s\-\S\i\e\r\r\a ]] ++ hostname + [[ reynolds == *\r\e\y\n\o\l\d\s* ]] + export PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/jenkins/bin + PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/jenkins/bin + '[' virtualenv = virtualenv ']' + rm -rf venv_TransportMaps-private-hotfixes_python3 + virtualenv --python=python3 venv_TransportMaps-private-hotfixes_python3 Already using interpreter /usr/bin/python3 Using base prefix '/usr' New python executable in /jenkins/workspace/TransportMaps-private-hotfixes/COMPILER/gcc/MACHINE/reynolds/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-hotfixes_python3/bin/python3 Also creating executable in /jenkins/workspace/TransportMaps-private-hotfixes/COMPILER/gcc/MACHINE/reynolds/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-hotfixes_python3/bin/python Installing setuptools, pkg_resources, pip, wheel...done. + source venv_TransportMaps-private-hotfixes_python3/bin/activate ++ deactivate nondestructive ++ unset -f pydoc ++ '[' -z '' ']' ++ '[' -z '' ']' ++ '[' -n /bin/bash ']' ++ hash -r ++ '[' -z '' ']' ++ unset VIRTUAL_ENV ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/jenkins/workspace/TransportMaps-private-hotfixes/COMPILER/gcc/MACHINE/reynolds/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-hotfixes_python3 ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/jenkins/bin ++ PATH=/jenkins/workspace/TransportMaps-private-hotfixes/COMPILER/gcc/MACHINE/reynolds/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-hotfixes_python3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/jenkins/bin ++ export PATH ++ '[' -z '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ '[' x '!=' x ']' +++ basename /jenkins/workspace/TransportMaps-private-hotfixes/COMPILER/gcc/MACHINE/reynolds/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-hotfixes_python3 ++ PS1='(venv_TransportMaps-private-hotfixes_python3) ' ++ export PS1 ++ alias pydoc ++ '[' -n /bin/bash ']' ++ hash -r ++ python -V + PY_VERS='Python 3.5.2' + CMD='import logging;' + CMD+='import TransportMaps as TM;' + CMD+='import warnings;' + CMD+='warnings.simplefilter('\''ignore'\'');' + CMD+='TM.tests.run_all(log_level=logging.ERROR,ttype='\''serial'\'')' + echo '' + echo 'TEST_NAME: TransportMaps-private-hotfixes' TEST_NAME: TransportMaps-private-hotfixes ++ hostname + echo 'HOSTNAME: reynolds' HOSTNAME: reynolds + echo 'PATH: /jenkins/workspace/TransportMaps-private-hotfixes/COMPILER/gcc/MACHINE/reynolds/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-hotfixes_python3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/jenkins/bin' PATH: /jenkins/workspace/TransportMaps-private-hotfixes/COMPILER/gcc/MACHINE/reynolds/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-hotfixes_python3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/jenkins/bin + echo 'VENV_OPTS: ' VENV_OPTS: + echo 'PY-VERS: Python 3.5.2' PY-VERS: Python 3.5.2 + echo 'PY-CMD: import logging;import TransportMaps as TM;import warnings;warnings.simplefilter('\''ignore'\'');TM.tests.run_all(log_level=logging.ERROR,ttype='\''serial'\'')' PY-CMD: import logging;import TransportMaps as TM;import warnings;warnings.simplefilter('ignore');TM.tests.run_all(log_level=logging.ERROR,ttype='serial') + echo '' + echo 'Upgrading pip' Upgrading pip + python /jenkins/workspace/TransportMaps-private-hotfixes/COMPILER/gcc/MACHINE/reynolds/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-hotfixes_python3/bin/pip install --upgrade pip Requirement already up-to-date: pip in ./venv_TransportMaps-private-hotfixes_python3/lib/python3.5/site-packages + echo 'Installing numpy' Installing numpy + python /jenkins/workspace/TransportMaps-private-hotfixes/COMPILER/gcc/MACHINE/reynolds/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-hotfixes_python3/bin/pip install --upgrade numpy Collecting numpy Using cached numpy-1.13.3-cp35-cp35m-manylinux1_x86_64.whl Installing collected packages: numpy Successfully installed numpy-1.13.3 + echo Packaging Packaging + rm -fr tmp_sdist + mkdir tmp_sdist + python setup.py clean --all running clean 'build/lib' does not exist -- can't clean it 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.5' does not exist -- can't clean it + python setup.py sdist --dist-dir=tmp_sdist running sdist running egg_info creating TransportMaps.egg-info writing dependency_links to TransportMaps.egg-info/dependency_links.txt writing requirements to TransportMaps.egg-info/requires.txt writing TransportMaps.egg-info/PKG-INFO writing top-level names to TransportMaps.egg-info/top_level.txt writing manifest file 'TransportMaps.egg-info/SOURCES.txt' reading manifest file 'TransportMaps.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'Examples/stable/?/data' warning: no previously-included files found matching '.git' warning: no previously-included files found matching '*.dill' warning: no previously-included files found matching '*.hdf5' warning: no previously-included files found matching '*.pkl' warning: no previously-included files found matching '*.pkl.old' warning: no previously-included files found matching '*~' writing manifest file 'TransportMaps.egg-info/SOURCES.txt' running check creating TransportMaps-1.0b2 creating TransportMaps-1.0b2/Docs creating TransportMaps-1.0b2/Docs/conf3 creating TransportMaps-1.0b2/Docs/make3 creating TransportMaps-1.0b2/Docs/source creating TransportMaps-1.0b2/Docs/source/Figures creating TransportMaps-1.0b2/Docs/source/Figures/BOD creating TransportMaps-1.0b2/Docs/source/Figures/working creating TransportMaps-1.0b2/Docs/source/Figures/working/inv-sparsity creating TransportMaps-1.0b2/Docs/source/aux creating TransportMaps-1.0b2/Docs/source/aux/inv-stocvol creating TransportMaps-1.0b2/Docs/source/aux/xml creating TransportMaps-1.0b2/Docs/source/cli creating TransportMaps-1.0b2/Examples creating TransportMaps-1.0b2/Examples/stable creating TransportMaps-1.0b2/Examples/stable/BODmodel creating TransportMaps-1.0b2/Examples/stable/CPP-Module creating TransportMaps-1.0b2/Examples/stable/CPP-Module/xun creating TransportMaps-1.0b2/Examples/stable/CPP-Module/xun/tests creating TransportMaps-1.0b2/Examples/stable/StochasticVolatility creating TransportMaps-1.0b2/Examples/stable/TestDistributions creating TransportMaps-1.0b2/Examples/stable/cluster creating TransportMaps-1.0b2/Examples/stable/cluster/voyager creating TransportMaps-1.0b2/TransportMaps creating TransportMaps-1.0b2/TransportMaps.egg-info creating TransportMaps-1.0b2/TransportMaps/Algorithms creating TransportMaps-1.0b2/TransportMaps/Algorithms/Adaptivity creating TransportMaps-1.0b2/TransportMaps/Algorithms/SequentialInference creating TransportMaps-1.0b2/TransportMaps/CLI creating TransportMaps-1.0b2/TransportMaps/Densities creating TransportMaps-1.0b2/TransportMaps/Densities/Decomposable creating TransportMaps-1.0b2/TransportMaps/Densities/Inference creating TransportMaps-1.0b2/TransportMaps/Diagnostics creating TransportMaps-1.0b2/TransportMaps/Distributions creating TransportMaps-1.0b2/TransportMaps/Distributions/Decomposable creating TransportMaps-1.0b2/TransportMaps/Distributions/Examples creating TransportMaps-1.0b2/TransportMaps/Distributions/Examples/BiochemicalOxigenDemand creating TransportMaps-1.0b2/TransportMaps/Distributions/Examples/InertialNavigationSystem creating TransportMaps-1.0b2/TransportMaps/Distributions/Examples/LogGaussianCoxProcess creating TransportMaps-1.0b2/TransportMaps/Distributions/Examples/RailwayVehicleDynamics creating TransportMaps-1.0b2/TransportMaps/Distributions/Examples/RailwayVehicleDynamics/Coradia175 creating TransportMaps-1.0b2/TransportMaps/Distributions/Examples/ScalarLinearGaussMarkovProcess creating TransportMaps-1.0b2/TransportMaps/Distributions/Examples/StochasticVolatility creating TransportMaps-1.0b2/TransportMaps/Distributions/Inference creating TransportMaps-1.0b2/TransportMaps/Functionals creating TransportMaps-1.0b2/TransportMaps/Likelihoods creating TransportMaps-1.0b2/TransportMaps/Maps creating TransportMaps-1.0b2/TransportMaps/Maps/Decomposable creating TransportMaps-1.0b2/TransportMaps/Optimization creating TransportMaps-1.0b2/TransportMaps/Samplers creating TransportMaps-1.0b2/TransportMaps/XML creating TransportMaps-1.0b2/TransportMaps/XML/schema creating TransportMaps-1.0b2/TransportMaps/tests creating TransportMaps-1.0b2/TransportMaps/tests/xml creating TransportMaps-1.0b2/TransportMaps/tests/xml/maps creating TransportMaps-1.0b2/scripts copying files to TransportMaps-1.0b2... copying COPYING -> TransportMaps-1.0b2 copying COPYING.LESSER -> TransportMaps-1.0b2 copying MANIFEST.in -> TransportMaps-1.0b2 copying README.rst -> TransportMaps-1.0b2 copying requirements-H5PY.txt -> TransportMaps-1.0b2 copying requirements-MPI.txt -> TransportMaps-1.0b2 copying requirements-PLOT.txt -> TransportMaps-1.0b2 copying requirements-SPHINX.txt -> TransportMaps-1.0b2 copying requirements.txt -> TransportMaps-1.0b2 copying setup.cfg -> TransportMaps-1.0b2 copying setup.py -> TransportMaps-1.0b2 copying Docs/conf3/conf.py -> TransportMaps-1.0b2/Docs/conf3 copying Docs/make3/Makefile -> TransportMaps-1.0b2/Docs/make3 copying Docs/make3/build-api -> TransportMaps-1.0b2/Docs/make3 copying Docs/make3/checklinks.sh -> TransportMaps-1.0b2/Docs/make3 copying Docs/make3/run-autosummary.sh.deprec -> TransportMaps-1.0b2/Docs/make3 copying Docs/source/aa-references.rst -> TransportMaps-1.0b2/Docs/source copying Docs/source/credits.rst -> TransportMaps-1.0b2/Docs/source copying Docs/source/example-BOD-4d.ipynb -> TransportMaps-1.0b2/Docs/source copying Docs/source/example-banana-2d.ipynb -> TransportMaps-1.0b2/Docs/source copying Docs/source/example-beta-1d.ipynb -> TransportMaps-1.0b2/Docs/source copying Docs/source/example-gumbel-1d.ipynb -> TransportMaps-1.0b2/Docs/source copying Docs/source/example-inverse-gumbel-1d.ipynb -> TransportMaps-1.0b2/Docs/source copying Docs/source/example-inverse-stochastic-volatility-6d.ipynb -> TransportMaps-1.0b2/Docs/source copying Docs/source/example-sequential-stocvol-6d.ipynb -> TransportMaps-1.0b2/Docs/source copying Docs/source/examples-direct-transport.rst -> TransportMaps-1.0b2/Docs/source copying Docs/source/examples-inverse-transport-from-density.rst -> TransportMaps-1.0b2/Docs/source copying Docs/source/examples-transport-from-samples.rst -> TransportMaps-1.0b2/Docs/source copying Docs/source/examples.rst -> TransportMaps-1.0b2/Docs/source copying Docs/source/index.rst -> TransportMaps-1.0b2/Docs/source copying Docs/source/install.rst -> TransportMaps-1.0b2/Docs/source copying Docs/source/linking.rst -> TransportMaps-1.0b2/Docs/source copying Docs/source/map-from-samples.ipynb -> TransportMaps-1.0b2/Docs/source copying Docs/source/mpi-usage.ipynb -> TransportMaps-1.0b2/Docs/source copying Docs/source/pm-bayesian-inference.ipynb -> TransportMaps-1.0b2/Docs/source copying Docs/source/pm-data-assimilation.ipynb -> TransportMaps-1.0b2/Docs/source copying Docs/source/pm-distributions.ipynb -> TransportMaps-1.0b2/Docs/source copying Docs/source/statistical-models.rst -> TransportMaps-1.0b2/Docs/source copying Docs/source/summary.rst -> TransportMaps-1.0b2/Docs/source copying Docs/source/tutorial.rst -> TransportMaps-1.0b2/Docs/source copying Docs/source/xml-descriptors.ipynb -> TransportMaps-1.0b2/Docs/source copying Docs/source/Figures/DensityTransform.svg -> TransportMaps-1.0b2/Docs/source/Figures copying Docs/source/Figures/MPI-star-structure.png -> TransportMaps-1.0b2/Docs/source/Figures copying Docs/source/Figures/SG-Transform.svg -> TransportMaps-1.0b2/Docs/source/Figures copying Docs/source/Figures/ScatterTransform.svg -> TransportMaps-1.0b2/Docs/source/Figures copying Docs/source/Figures/SequentialHiddenMarkovModel.png -> TransportMaps-1.0b2/Docs/source/Figures copying Docs/source/Figures/dataAssimilation.png -> TransportMaps-1.0b2/Docs/source/Figures copying Docs/source/Figures/dataAssimilationHyper-s1-after.png -> TransportMaps-1.0b2/Docs/source/Figures copying Docs/source/Figures/dataAssimilationHyper-s1-before.png -> TransportMaps-1.0b2/Docs/source/Figures copying Docs/source/Figures/dataAssimilationHyper-s2-after.png -> TransportMaps-1.0b2/Docs/source/Figures copying Docs/source/Figures/dataAssimilationHyper-s2-before.png -> TransportMaps-1.0b2/Docs/source/Figures copying Docs/source/Figures/dataAssimilationHyper-s3-after.png -> TransportMaps-1.0b2/Docs/source/Figures copying Docs/source/Figures/dataAssimilationHyper-s3-before.png -> TransportMaps-1.0b2/Docs/source/Figures copying Docs/source/Figures/flowchart.pdf -> TransportMaps-1.0b2/Docs/source/Figures copying Docs/source/Figures/flowchart.png -> TransportMaps-1.0b2/Docs/source/Figures copying Docs/source/Figures/inv-sparsity.svg -> TransportMaps-1.0b2/Docs/source/Figures copying Docs/source/Figures/mpi_eval-distributed-memory.png -> TransportMaps-1.0b2/Docs/source/Figures copying Docs/source/Figures/mpi_eval-simple.png -> TransportMaps-1.0b2/Docs/source/Figures copying Docs/source/Figures/BOD/BOD_test_bottles.jpg -> TransportMaps-1.0b2/Docs/source/Figures/BOD copying Docs/source/Figures/BOD/Influent_raw_wastewater.jpg -> TransportMaps-1.0b2/Docs/source/Figures/BOD copying Docs/source/Figures/BOD/Marlborough_East_Wastewater_Treatment_Plant_Aerial.JPG -> TransportMaps-1.0b2/Docs/source/Figures/BOD copying Docs/source/Figures/BOD/PatchWork.png -> TransportMaps-1.0b2/Docs/source/Figures/BOD copying Docs/source/Figures/BOD/PatchWork.xcf -> TransportMaps-1.0b2/Docs/source/Figures/BOD copying Docs/source/Figures/BOD/samples.jpg -> TransportMaps-1.0b2/Docs/source/Figures/BOD copying Docs/source/Figures/working/MPI-star-structure.svg -> TransportMaps-1.0b2/Docs/source/Figures/working copying Docs/source/Figures/working/dataAssimilation.svg -> TransportMaps-1.0b2/Docs/source/Figures/working copying Docs/source/Figures/working/dataAssimilationHyper-s1-after.svg -> TransportMaps-1.0b2/Docs/source/Figures/working copying Docs/source/Figures/working/dataAssimilationHyper-s1-before.svg -> TransportMaps-1.0b2/Docs/source/Figures/working copying Docs/source/Figures/working/dataAssimilationHyper-s2-after.svg -> TransportMaps-1.0b2/Docs/source/Figures/working copying Docs/source/Figures/working/dataAssimilationHyper-s2-before.svg -> TransportMaps-1.0b2/Docs/source/Figures/working copying Docs/source/Figures/working/dataAssimilationHyper-s3-after.svg -> TransportMaps-1.0b2/Docs/source/Figures/working copying Docs/source/Figures/working/dataAssimilationHyper-s3-before.svg -> TransportMaps-1.0b2/Docs/source/Figures/working copying Docs/source/Figures/working/dataAssimilationHyper.svg -> TransportMaps-1.0b2/Docs/source/Figures/working copying Docs/source/Figures/working/flowchart.svg -> TransportMaps-1.0b2/Docs/source/Figures/working copying Docs/source/Figures/working/inkscape-preamble.tex -> TransportMaps-1.0b2/Docs/source/Figures/working copying Docs/source/Figures/working/mpi_eval-distributed-memory.svg -> TransportMaps-1.0b2/Docs/source/Figures/working copying Docs/source/Figures/working/mpi_eval-simple-flow.svg -> TransportMaps-1.0b2/Docs/source/Figures/working copying Docs/source/Figures/working/inv-sparsity/inkscape-preamble.tex -> TransportMaps-1.0b2/Docs/source/Figures/working/inv-sparsity copying Docs/source/Figures/working/inv-sparsity/inv-sparsity.pdf -> TransportMaps-1.0b2/Docs/source/Figures/working/inv-sparsity copying Docs/source/Figures/working/inv-sparsity/inv-sparsity.svg -> TransportMaps-1.0b2/Docs/source/Figures/working/inv-sparsity copying Docs/source/Figures/working/inv-sparsity/inv-sparsity.tex -> TransportMaps-1.0b2/Docs/source/Figures/working/inv-sparsity copying Docs/source/Figures/working/inv-sparsity/optionsDecompositionGraphs.tex -> TransportMaps-1.0b2/Docs/source/Figures/working/inv-sparsity copying Docs/source/Figures/working/inv-sparsity/stylesTikzGraphs.tex -> TransportMaps-1.0b2/Docs/source/Figures/working/inv-sparsity copying Docs/source/Figures/working/inv-sparsity/tikz_sparsityVolHyper.tex -> TransportMaps-1.0b2/Docs/source/Figures/working/inv-sparsity copying Docs/source/aux/inv-stocvol/Distribution.dill -> TransportMaps-1.0b2/Docs/source/aux/inv-stocvol copying Docs/source/aux/inv-stocvol/DistributionGeneration.py -> TransportMaps-1.0b2/Docs/source/aux/inv-stocvol copying Docs/source/aux/inv-stocvol/Sequential-IntSq-Postprocess.dill -> TransportMaps-1.0b2/Docs/source/aux/inv-stocvol copying Docs/source/aux/inv-stocvol/Sequential-IntSq-Postprocess.dill.hdf5 -> TransportMaps-1.0b2/Docs/source/aux/inv-stocvol copying Docs/source/aux/inv-stocvol/Sequential-IntSq.dill -> TransportMaps-1.0b2/Docs/source/aux/inv-stocvol copying Docs/source/aux/xml/BODmap.xml -> TransportMaps-1.0b2/Docs/source/aux/xml copying Docs/source/aux/xml/IntSqSecOrd.xml -> TransportMaps-1.0b2/Docs/source/aux/xml copying Docs/source/aux/xml/IntSqSecOrdHead.xml -> TransportMaps-1.0b2/Docs/source/aux/xml copying Docs/source/aux/xml/LinearSpan.xml -> TransportMaps-1.0b2/Docs/source/aux/xml copying Docs/source/cli/Sequential-IntSq-aligned-conditionals-approx-base.svg -> TransportMaps-1.0b2/Docs/source/cli copying Docs/source/cli/Sequential-IntSq-aligned-marginals-approx-target.svg -> TransportMaps-1.0b2/Docs/source/cli copying Docs/source/cli/Sequential-IntSq-filtering-conditionals-0.svg -> TransportMaps-1.0b2/Docs/source/cli copying Docs/source/cli/Sequential-IntSq-filtering-conditionals-1.svg -> TransportMaps-1.0b2/Docs/source/cli copying Docs/source/cli/Sequential-IntSq-filtering-conditionals-2.svg -> TransportMaps-1.0b2/Docs/source/cli copying Docs/source/cli/Sequential-IntSq-filtering-conditionals-3.svg -> TransportMaps-1.0b2/Docs/source/cli copying Docs/source/cli/Sequential-IntSq-filtering-marginals-0.svg -> TransportMaps-1.0b2/Docs/source/cli copying Docs/source/cli/Sequential-IntSq-filtering-marginals-1.svg -> TransportMaps-1.0b2/Docs/source/cli copying Docs/source/cli/Sequential-IntSq-filtering-marginals-2.svg -> TransportMaps-1.0b2/Docs/source/cli copying Docs/source/cli/Sequential-IntSq-filtering-marginals-3.svg -> TransportMaps-1.0b2/Docs/source/cli copying Docs/source/cli/Sequential-IntSq-metropolis-ess.svg -> TransportMaps-1.0b2/Docs/source/cli copying Docs/source/cli/Sequential-IntSq-random-conditionals-approx-base.svg -> TransportMaps-1.0b2/Docs/source/cli copying Docs/source/cli/cli.ipynb -> TransportMaps-1.0b2/Docs/source/cli copying Examples/stable/BODmodel/DataGeneration.py -> TransportMaps-1.0b2/Examples/stable/BODmodel copying Examples/stable/CPP-Module/KLdivergence-InverseMap-InverseConstruction.py -> TransportMaps-1.0b2/Examples/stable/CPP-Module copying Examples/stable/CPP-Module/xun/setup.py -> TransportMaps-1.0b2/Examples/stable/CPP-Module/xun copying Examples/stable/CPP-Module/xun/tests/test.py -> TransportMaps-1.0b2/Examples/stable/CPP-Module/xun/tests copying Examples/stable/StochasticVolatility/DataGeneration.py -> TransportMaps-1.0b2/Examples/stable/StochasticVolatility copying Examples/stable/StochasticVolatility/PlotExchanges.py -> TransportMaps-1.0b2/Examples/stable/StochasticVolatility copying Examples/stable/StochasticVolatility/mcmc.py -> TransportMaps-1.0b2/Examples/stable/StochasticVolatility copying Examples/stable/StochasticVolatility/postprocess-plotting.py -> TransportMaps-1.0b2/Examples/stable/StochasticVolatility copying Examples/stable/TestDistributions/KLdivergence-InverseMap-DirectConstruction-ByStep.py -> TransportMaps-1.0b2/Examples/stable/TestDistributions copying Examples/stable/TestDistributions/KLdivergence-InverseMap-DirectConstruction.py -> TransportMaps-1.0b2/Examples/stable/TestDistributions copying Examples/stable/TestDistributions/KLdivergence-InverseMap-InverseConstruction.py -> TransportMaps-1.0b2/Examples/stable/TestDistributions copying Examples/stable/TestDistributions/KLdivergence.py -> TransportMaps-1.0b2/Examples/stable/TestDistributions copying Examples/stable/TestDistributions/Regression.py -> TransportMaps-1.0b2/Examples/stable/TestDistributions copying Examples/stable/cluster/voyager/run_unit_tests.py -> TransportMaps-1.0b2/Examples/stable/cluster/voyager copying TransportMaps/Defaults.py -> TransportMaps-1.0b2/TransportMaps copying TransportMaps/External.py -> TransportMaps-1.0b2/TransportMaps copying TransportMaps/FiniteDifference.py -> TransportMaps-1.0b2/TransportMaps copying TransportMaps/Misc.py -> TransportMaps-1.0b2/TransportMaps copying TransportMaps/ObjectBase.py -> TransportMaps-1.0b2/TransportMaps copying TransportMaps/Routines.py -> TransportMaps-1.0b2/TransportMaps copying TransportMaps/__init__.py -> TransportMaps-1.0b2/TransportMaps copying TransportMaps/_version.py -> TransportMaps-1.0b2/TransportMaps copying TransportMaps.egg-info/PKG-INFO -> TransportMaps-1.0b2/TransportMaps.egg-info copying TransportMaps.egg-info/SOURCES.txt -> TransportMaps-1.0b2/TransportMaps.egg-info copying TransportMaps.egg-info/dependency_links.txt -> TransportMaps-1.0b2/TransportMaps.egg-info copying TransportMaps.egg-info/not-zip-safe -> TransportMaps-1.0b2/TransportMaps.egg-info copying TransportMaps.egg-info/requires.txt -> TransportMaps-1.0b2/TransportMaps.egg-info copying TransportMaps.egg-info/top_level.txt -> TransportMaps-1.0b2/TransportMaps.egg-info copying TransportMaps/Algorithms/__init__.py -> TransportMaps-1.0b2/TransportMaps/Algorithms copying TransportMaps/Algorithms/Adaptivity/AdaptivityBase.py -> TransportMaps-1.0b2/TransportMaps/Algorithms/Adaptivity copying TransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py -> TransportMaps-1.0b2/TransportMaps/Algorithms/Adaptivity copying TransportMaps/Algorithms/Adaptivity/RegressionAdaptivity.py -> TransportMaps-1.0b2/TransportMaps/Algorithms/Adaptivity copying TransportMaps/Algorithms/Adaptivity/__init__.py -> TransportMaps-1.0b2/TransportMaps/Algorithms/Adaptivity copying TransportMaps/Algorithms/SequentialInference/LinearSequentialInference.py -> TransportMaps-1.0b2/TransportMaps/Algorithms/SequentialInference copying TransportMaps/Algorithms/SequentialInference/NonLinearSequentialInference.py -> TransportMaps-1.0b2/TransportMaps/Algorithms/SequentialInference copying TransportMaps/Algorithms/SequentialInference/SequentialInferenceBase.py -> TransportMaps-1.0b2/TransportMaps/Algorithms/SequentialInference copying TransportMaps/Algorithms/SequentialInference/__init__.py -> TransportMaps-1.0b2/TransportMaps/Algorithms/SequentialInference copying TransportMaps/CLI/AvailableOptions.py -> TransportMaps-1.0b2/TransportMaps/CLI copying TransportMaps/CLI/PostprocessBase.py -> TransportMaps-1.0b2/TransportMaps/CLI copying TransportMaps/CLI/ScriptBase.py -> TransportMaps-1.0b2/TransportMaps/CLI copying TransportMaps/CLI/SequentialPostprocessBase.py -> TransportMaps-1.0b2/TransportMaps/CLI copying TransportMaps/CLI/__init__.py -> TransportMaps-1.0b2/TransportMaps/CLI copying TransportMaps/Densities/Densities.py -> TransportMaps-1.0b2/TransportMaps/Densities copying TransportMaps/Densities/__init__.py -> TransportMaps-1.0b2/TransportMaps/Densities copying TransportMaps/Densities/Decomposable/SequentialInferenceDensities.py -> TransportMaps-1.0b2/TransportMaps/Densities/Decomposable copying TransportMaps/Densities/Decomposable/__init__.py -> TransportMaps-1.0b2/TransportMaps/Densities/Decomposable copying TransportMaps/Densities/Inference/InferenceBase.py -> TransportMaps-1.0b2/TransportMaps/Densities/Inference copying TransportMaps/Densities/Inference/__init__.py -> TransportMaps-1.0b2/TransportMaps/Densities/Inference copying TransportMaps/Diagnostics/Plotting.py -> TransportMaps-1.0b2/TransportMaps/Diagnostics copying TransportMaps/Diagnostics/Routines.py -> TransportMaps-1.0b2/TransportMaps/Diagnostics copying TransportMaps/Diagnostics/__init__.py -> TransportMaps-1.0b2/TransportMaps/Diagnostics copying TransportMaps/Distributions/ConditionalDistributions.py -> TransportMaps-1.0b2/TransportMaps/Distributions copying TransportMaps/Distributions/DistributionBase.py -> TransportMaps-1.0b2/TransportMaps/Distributions copying TransportMaps/Distributions/FrozenDistributions.py -> TransportMaps-1.0b2/TransportMaps/Distributions copying TransportMaps/Distributions/ParametricDistributionBase.py -> TransportMaps-1.0b2/TransportMaps/Distributions copying TransportMaps/Distributions/TransportMapDistributions.py -> TransportMaps-1.0b2/TransportMaps/Distributions copying TransportMaps/Distributions/__init__.py -> TransportMaps-1.0b2/TransportMaps/Distributions copying TransportMaps/Distributions/Decomposable/LinearGaussianSequentialInferenceDistributions.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Decomposable copying TransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Decomposable copying TransportMaps/Distributions/Decomposable/__init__.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Decomposable copying TransportMaps/Distributions/Examples/SimpleDistributions.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Examples copying TransportMaps/Distributions/Examples/__init__.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Examples copying TransportMaps/Distributions/Examples/BiochemicalOxigenDemand/BODDistributions.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Examples/BiochemicalOxigenDemand copying TransportMaps/Distributions/Examples/BiochemicalOxigenDemand/__init__.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Examples/BiochemicalOxigenDemand copying TransportMaps/Distributions/Examples/InertialNavigationSystem/INSDistributions.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Examples/InertialNavigationSystem copying TransportMaps/Distributions/Examples/InertialNavigationSystem/__init__.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Examples/InertialNavigationSystem copying TransportMaps/Distributions/Examples/LogGaussianCoxProcess/__init__.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Examples/LogGaussianCoxProcess copying TransportMaps/Distributions/Examples/RailwayVehicleDynamics/__init__.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Examples/RailwayVehicleDynamics copying TransportMaps/Distributions/Examples/RailwayVehicleDynamics/Coradia175/Coradia175VehicleParametersEstimation.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Examples/RailwayVehicleDynamics/Coradia175 copying TransportMaps/Distributions/Examples/RailwayVehicleDynamics/Coradia175/Coradia175VehicleStateSpace.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Examples/RailwayVehicleDynamics/Coradia175 copying TransportMaps/Distributions/Examples/RailwayVehicleDynamics/Coradia175/__init__.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Examples/RailwayVehicleDynamics/Coradia175 copying TransportMaps/Distributions/Examples/ScalarLinearGaussMarkovProcess/Distributions.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Examples/ScalarLinearGaussMarkovProcess copying TransportMaps/Distributions/Examples/ScalarLinearGaussMarkovProcess/__init__.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Examples/ScalarLinearGaussMarkovProcess copying TransportMaps/Distributions/Examples/StochasticVolatility/StocVolHyperDistributions.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Examples/StochasticVolatility copying TransportMaps/Distributions/Examples/StochasticVolatility/__init__.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Examples/StochasticVolatility copying TransportMaps/Distributions/Inference/InferenceBase.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Inference copying TransportMaps/Distributions/Inference/__init__.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Inference copying TransportMaps/Functionals/AlgebraicLinearSpanApproximations.py -> TransportMaps-1.0b2/TransportMaps/Functionals copying TransportMaps/Functionals/FrozenMonotonicFunctions.py -> TransportMaps-1.0b2/TransportMaps/Functionals copying TransportMaps/Functionals/FunctionBase.py -> TransportMaps-1.0b2/TransportMaps/Functionals copying TransportMaps/Functionals/LinearSpanApproximationBase.py -> TransportMaps-1.0b2/TransportMaps/Functionals copying TransportMaps/Functionals/MonotonicFunctionApproximations.py -> TransportMaps-1.0b2/TransportMaps/Functionals copying TransportMaps/Functionals/ParametricFunctionApproximationBase.py -> TransportMaps-1.0b2/TransportMaps/Functionals copying TransportMaps/Functionals/ProductDistributionParametricPullbackComponentFunctionBase.py -> TransportMaps-1.0b2/TransportMaps/Functionals copying TransportMaps/Functionals/__init__.py -> TransportMaps-1.0b2/TransportMaps/Functionals copying TransportMaps/Likelihoods/LikelihoodBase.py -> TransportMaps-1.0b2/TransportMaps/Likelihoods copying TransportMaps/Likelihoods/__init__.py -> TransportMaps-1.0b2/TransportMaps/Likelihoods copying TransportMaps/Maps/FrozenTriangularTransportMaps.py -> TransportMaps-1.0b2/TransportMaps/Maps copying TransportMaps/Maps/FullTransportMaps.py -> TransportMaps-1.0b2/TransportMaps/Maps copying TransportMaps/Maps/MapBase.py -> TransportMaps-1.0b2/TransportMaps/Maps copying TransportMaps/Maps/SimpleTransportMaps.py -> TransportMaps-1.0b2/TransportMaps/Maps copying TransportMaps/Maps/TransportMapBase.py -> TransportMaps-1.0b2/TransportMaps/Maps copying TransportMaps/Maps/TriangularTransportMapBase.py -> TransportMaps-1.0b2/TransportMaps/Maps copying TransportMaps/Maps/TriangularTransportMaps.py -> TransportMaps-1.0b2/TransportMaps/Maps copying TransportMaps/Maps/__init__.py -> TransportMaps-1.0b2/TransportMaps/Maps copying TransportMaps/Maps/Decomposable/SequentialInferenceMaps.py -> TransportMaps-1.0b2/TransportMaps/Maps/Decomposable copying TransportMaps/Maps/Decomposable/__init__.py -> TransportMaps-1.0b2/TransportMaps/Maps/Decomposable copying TransportMaps/Optimization/Optimizers.py -> TransportMaps-1.0b2/TransportMaps/Optimization copying TransportMaps/Optimization/__init__.py -> TransportMaps-1.0b2/TransportMaps/Optimization copying TransportMaps/Samplers/IndependentSamplers.py -> TransportMaps-1.0b2/TransportMaps/Samplers copying TransportMaps/Samplers/MarkovChainSamplers.py -> TransportMaps-1.0b2/TransportMaps/Samplers copying TransportMaps/Samplers/Routines.py -> TransportMaps-1.0b2/TransportMaps/Samplers copying TransportMaps/Samplers/SamplerBase.py -> TransportMaps-1.0b2/TransportMaps/Samplers copying TransportMaps/Samplers/__init__.py -> TransportMaps-1.0b2/TransportMaps/Samplers copying TransportMaps/XML/Parser.py -> TransportMaps-1.0b2/TransportMaps/XML copying TransportMaps/XML/__init__.py -> TransportMaps-1.0b2/TransportMaps/XML copying TransportMaps/XML/schema/map.xsd -> TransportMaps-1.0b2/TransportMaps/XML/schema copying TransportMaps/tests/TestFunctions.py -> TransportMaps-1.0b2/TransportMaps/tests copying TransportMaps/tests/__init__.py -> TransportMaps-1.0b2/TransportMaps/tests copying TransportMaps/tests/test_L2_minimization.py -> TransportMaps-1.0b2/TransportMaps/tests copying TransportMaps/tests/test_L2_misfit.py -> TransportMaps-1.0b2/TransportMaps/tests copying TransportMaps/tests/test_all.py -> TransportMaps-1.0b2/TransportMaps/tests copying TransportMaps/tests/test_distributions.py -> TransportMaps-1.0b2/TransportMaps/tests copying TransportMaps/tests/test_functions.py -> TransportMaps-1.0b2/TransportMaps/tests copying TransportMaps/tests/test_kl_divergence.py -> TransportMaps-1.0b2/TransportMaps/tests copying TransportMaps/tests/test_kl_minimization.py -> TransportMaps-1.0b2/TransportMaps/tests copying TransportMaps/tests/test_laplace.py -> TransportMaps-1.0b2/TransportMaps/tests copying TransportMaps/tests/test_scripts.py -> TransportMaps-1.0b2/TransportMaps/tests copying TransportMaps/tests/test_sequential_inference.py -> TransportMaps-1.0b2/TransportMaps/tests copying TransportMaps/tests/test_transportmap_distributions.py -> TransportMaps-1.0b2/TransportMaps/tests copying TransportMaps/tests/test_transportmap_distributions_sampling.py -> TransportMaps-1.0b2/TransportMaps/tests copying TransportMaps/tests/test_transportmaps.py -> TransportMaps-1.0b2/TransportMaps/tests copying TransportMaps/tests/test_xml.py -> TransportMaps-1.0b2/TransportMaps/tests copying TransportMaps/tests/xml/maps/FullOrdIntExpLinearMap_5d.xml -> TransportMaps-1.0b2/TransportMaps/tests/xml/maps copying TransportMaps/tests/xml/maps/FullOrdIntExpNonLinearHeadMap_5d.xml -> TransportMaps-1.0b2/TransportMaps/tests/xml/maps copying TransportMaps/tests/xml/maps/FullOrdIntExpNonLinearMap_5d.xml -> TransportMaps-1.0b2/TransportMaps/tests/xml/maps copying TransportMaps/tests/xml/maps/FullOrdIntExpTriDiagonalMap_5d.xml -> TransportMaps-1.0b2/TransportMaps/tests/xml/maps copying TransportMaps/tests/xml/maps/FullOrdMonotLinearSpanLinearMap_5d.xml -> TransportMaps-1.0b2/TransportMaps/tests/xml/maps copying TransportMaps/tests/xml/maps/MultiIdxMonotLinearSpanLinearMap_5d.xml -> TransportMaps-1.0b2/TransportMaps/tests/xml/maps copying TransportMaps/tests/xml/maps/TotalOrdIntExpDiagonalMap_5d.xml -> TransportMaps-1.0b2/TransportMaps/tests/xml/maps copying TransportMaps/tests/xml/maps/TotalOrdIntExpLinearMap_5d.xml -> TransportMaps-1.0b2/TransportMaps/tests/xml/maps copying TransportMaps/tests/xml/maps/TotalOrdIntExpNonLinearHeadMap_5d.xml -> TransportMaps-1.0b2/TransportMaps/tests/xml/maps copying TransportMaps/tests/xml/maps/TotalOrdIntExpNonLinearMap_5d.xml -> TransportMaps-1.0b2/TransportMaps/tests/xml/maps copying TransportMaps/tests/xml/maps/TotalOrdIntExpNonLinearRBFMap_5d.xml -> TransportMaps-1.0b2/TransportMaps/tests/xml/maps copying TransportMaps/tests/xml/maps/TotalOrdIntExpTriDiagonalMap_5d.xml -> TransportMaps-1.0b2/TransportMaps/tests/xml/maps copying TransportMaps/tests/xml/maps/TotalOrdIntSqLinearMap_5d.xml -> TransportMaps-1.0b2/TransportMaps/tests/xml/maps copying TransportMaps/tests/xml/maps/TotalOrdIntSqNonLinearHeadMap_5d.xml -> TransportMaps-1.0b2/TransportMaps/tests/xml/maps copying TransportMaps/tests/xml/maps/TotalOrdMonotLinearSpanLinearMap_5d.xml -> TransportMaps-1.0b2/TransportMaps/tests/xml/maps copying scripts/tmap-laplace -> TransportMaps-1.0b2/scripts copying scripts/tmap-max-likelihood -> TransportMaps-1.0b2/scripts copying scripts/tmap-postprocess -> TransportMaps-1.0b2/scripts copying scripts/tmap-sequential-postprocess -> TransportMaps-1.0b2/scripts copying scripts/tmap-sequential-tm -> TransportMaps-1.0b2/scripts copying scripts/tmap-tm -> TransportMaps-1.0b2/scripts Writing TransportMaps-1.0b2/setup.cfg Creating tar archive removing 'TransportMaps-1.0b2' (and everything under it) + cd tmp_sdist + echo Installing Installing ++ ls + INSTALLER=TransportMaps-1.0b2.tar.gz + PIP_FLAGS=--no-cache-dir + CC=gcc + MPI=False + H5PY=True + python /jenkins/workspace/TransportMaps-private-hotfixes/COMPILER/gcc/MACHINE/reynolds/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-hotfixes_python3/bin/pip install --upgrade TransportMaps-1.0b2.tar.gz Processing ./TransportMaps-1.0b2.tar.gz Requirement already up-to-date: numpy in /jenkins/workspace/TransportMaps-private-hotfixes/COMPILER/gcc/MACHINE/reynolds/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-hotfixes_python3/lib/python3.5/site-packages (from TransportMaps==1.0b2) Collecting orthpol_light>=1.0.1 (from TransportMaps==1.0b2) Collecting scipy (from TransportMaps==1.0b2) Using cached scipy-1.0.0-cp35-cp35m-manylinux1_x86_64.whl Collecting SpectralToolbox>=1.0.4 (from TransportMaps==1.0b2) Using cached SpectralToolbox-1.0.7.tar.gz Collecting dill (from TransportMaps==1.0b2) Collecting statsmodels (from TransportMaps==1.0b2) Using cached statsmodels-0.8.0-cp35-cp35m-manylinux1_x86_64.whl Collecting pyhmc (from TransportMaps==1.0b2) Using cached pyhmc-0.1.2.tar.gz Complete output from command python setup.py egg_info: Traceback (most recent call last): File "", line 1, in File "/tmp/pip-build-6zlzc84b/pyhmc/setup.py", line 29, in from Cython.Distutils import build_ext ImportError: No module named 'Cython' ---------------------------------------- Command "python setup.py egg_info" failed with error code 1 in /tmp/pip-build-6zlzc84b/pyhmc/ Build step 'Execute shell' marked build as failure [WS-CLEANUP] Deleting project workspace...[WS-CLEANUP] Skipped based on build state FAILURE Finished: FAILURE