Changes
#20 (Dec 3, 2019, 12:25:47 PM)
- fixed documentation — dabi / bitbucketweb
- gumbel example re-run for documentation — dabi / bitbucketweb
- fix committed for mpi with inverse from samples. The mpi_pool is not attached to objects anymore (so that it will be never serialized), but passed along with parameters — dabi / bitbucketweb
- additional fixes — dabi / bitbucketweb
#19 (Mar 31, 2019, 1:22:33 PM)
- fixed documentation — dabi / bitbucketweb
- gumbel example re-run for documentation — dabi / bitbucketweb
- fix committed for mpi with inverse from samples. The mpi_pool is not attached to objects anymore (so that it will be never serialized), but passed along with parameters — dabi / bitbucketweb
- additional fixes — dabi / bitbucketweb
#17 (Aug 2, 2018, 11:04:13 AM)
- fixed direct construction tutorial — dabi / bitbucketweb
- checked inverse gumbel tutorial — dabi / bitbucketweb
- updated version — dabi / bitbucketweb
#16 (Aug 1, 2018, 10:12:38 AM)
- fixing bugs in tutorial examples — dabi / bitbucketweb
- in the process of fixing documentation. Todo: sequential stochastic — dabi / bitbucketweb
#14 (Jun 12, 2018, 11:11:37 AM)
- generalized input arguments to ParametricDistriubtion, so that calls can — dabi / bitbucketweb
- generalized input arguments to ParametricDistriubtion, so that calls can — dabi / bitbucketweb
#13 (Jun 6, 2018, 6:05:21 PM)
- fixed last fix... — dabi / bitbucketweb
#12 (Jun 6, 2018, 3:15:26 PM)
- example on Gumbel 1d — rsb / bitbucketweb
- started with the Helmholtz equation — dabi / bitbucketweb
- integrated SING into TransportMaps — rebeccae.morrison / bitbucketweb
- cleaning SING files — rebeccae.morrison / bitbucketweb
- l1 tests and plotting scripts — rebeccae.morrison / bitbucketweb
- working on Helmholtz example from Ghattas' paper — dabi / bitbucketweb
- working on Helmholtz — dabi / bitbucketweb
- starting to work on actual probabilistic model — dabi / bitbucketweb
- renaming some sun_sing files — rebeccae.morrison / bitbucketweb
- updating run_sing files to run with SI.SING — rebeccae.morrison / bitbucketweb
- actually updating to run with SI.SING (ignore last commit) — rebeccae.morrison / bitbucketweb
- testing l1 — rebeccae.morrison / bitbucketweb
- l1 regularization — rebeccae.morrison / bitbucketweb
- Updated regularized map - SING now runs with 2 types of reg and no reg. — rsb / bitbucketweb
- relaxed rademacher, butterfly distribution, and more properties of — rebeccae.morrison / bitbucketweb
- relaxed rademacher uses uniform over (-1,1), not (0,1) — rebeccae.morrison / bitbucketweb
- node ordering fix — rebeccae.morrison / bitbucketweb
- changing parameters in Helmholtz — dabi / bitbucketweb
- added stub solver for EIT problem — dabi / bitbucketweb
- working on surface gradient — dabi / bitbucketweb
- working on CEM — dabi / bitbucketweb
- fixed EIT working on CEM — dabi / bitbucketweb
- plotting scripts for nips — rebeccae.morrison / bitbucketweb
- turned hessian off in sing — rebeccae.morrison / bitbucketweb
- mc studies 1step algs — rsb / bitbucketweb
- More MC Studies for SING — rsb / bitbucketweb
- working on models — dabi / bitbucketweb
- No electrodes model works — dabi / bitbucketweb
- working on discretized model — dabi / bitbucketweb
- working on discretized model — dabi / bitbucketweb
- gmsh mesh generation for discretized test — dabi / bitbucketweb
- working on complete model — dabi / bitbucketweb
- starting to work on adjoint equations — dabi / bitbucketweb
- messed up with no-electrodes model.. — dabi / bitbucketweb
- working on fast sensor function — dabi / bitbucketweb
- fixed sensor expression — dabi / bitbucketweb
- working on Dirichlet to Neumann model — dabi / bitbucketweb
- working on adjoint for no electrode model — dabi / bitbucketweb
- adjoint done — dabi / bitbucketweb
- gradient and Hessian working — dabi / bitbucketweb
- setting up the posterior distribution — dabi / bitbucketweb
- working on likelihood functions — dabi / bitbucketweb
- working on posterior distribution — dabi / bitbucketweb
- storage/loading of distribution works — dabi / bitbucketweb
- working on action of Hessian — dabi / bitbucketweb
- working on action_hess_a for transport map distributions — dabi / bitbucketweb
- working on minimization of kl divergence using action of the Hessian — dabi / bitbucketweb
- working on kl minimization tests — dabi / bitbucketweb
- unit tests are passing. todo: caching in Likelihood to avoid extra — dabi / bitbucketweb
- the distribution object is now pre-broadcasted to the children in — dabi / bitbucketweb
- fixed test_kl_divergence — dabi / bitbucketweb
- working on caching of Likelihood evaluations — dabi / bitbucketweb
- fixed init function — dabi / bitbucketweb
- The action of the Hessian is ready. Fixes #31. Caching issues reserved — dabi / bitbucketweb
- introducing cached and counted decorators — dabi / bitbucketweb
- adding counting output — dabi / bitbucketweb
- caching to be finished in TransportMaps and Maps in general. Then I need — dabi / bitbucketweb
- still working on maps... — dabi / bitbucketweb
- working on distributions — dabi / bitbucketweb
- testing caching. todo: caching in optimization problems — dabi / bitbucketweb
- added caching and counting wherever needed (maybe missing some spots). — dabi / bitbucketweb
- working on caching in Hessian. Todo: update and run unittests — dabi / bitbucketweb
- adding reset counters functionalities — dabi / bitbucketweb
- counting and resetting works. Caching also seems to work. TODO: — dabi / bitbucketweb
- caching does what is supposed to do! — dabi / bitbucketweb
- added manual test for caching and counting — dabi / bitbucketweb
- working on caching minimization routine — dabi / bitbucketweb
- working on unit tests for kl-divergence — dabi / bitbucketweb
- working on test_kl_divergence.py — dabi / bitbucketweb
- fixing an error at a time... — dabi / bitbucketweb
- kl_min tests work! — dabi / bitbucketweb
- fixing all unit tests — dabi / bitbucketweb
- porting MPI implementation to mpi_map v2.0 — dabi / bitbucketweb
- porting to mpi_map v2.0 completed. ToBeTested!! — dabi / bitbucketweb
- mpi_map v2 integrated and passing unit tests — dabi / bitbucketweb
- gathering of ncalls and nevals count at the end of optimization done — dabi / bitbucketweb
- passes unit tests — dabi / bitbucketweb
- now pointing to MPI_Pool_v2 in mpi_map v2.0 — dabi / bitbucketweb
- returning latest cache within log dictionary — dabi / bitbucketweb
- fixed py2/py3 issue with cached decorator — dabi / bitbucketweb
- fixed py2/py3 issue with cached decorator — dabi / bitbucketweb
- fixed py2/py3 issue with cached decorator — dabi / bitbucketweb
- fixing py2/py3 handling of *args and **kwargs (PEP3102) — dabi / bitbucketweb
- working on target distribution — dabi / bitbucketweb
- working on mpi evaluation of target density — dabi / bitbucketweb
- working on constant field data generation and parallel implementation — dabi / bitbucketweb
- working on speeding up function and gradient evaluatiions — dabi / bitbucketweb
- implemented fungrad — dabi / bitbucketweb
- working of action of Hessian — dabi / bitbucketweb
- mpi implementation not working... — dabi / bitbucketweb
- staring solving simple problems.. — dabi / bitbucketweb
- working on constant field problem and parallelization — dabi / bitbucketweb
- working on the problem set up — dabi / bitbucketweb
- data generation for constant field works — dabi / bitbucketweb
- working on adjoint for field — dabi / bitbucketweb
- fixed gradient! — dabi / bitbucketweb
- working on Hessian of EIT problem — dabi / bitbucketweb
- working on hessian — dabi / bitbucketweb
- fixed counter reset in some classes — dabi / bitbucketweb
- fixing regularization — dabi / bitbucketweb
- fixed caching for tuple_grad_a — dabi / bitbucketweb
- fixed some issues with tests and new counting decorators — dabi / bitbucketweb
- action of the Hessian for EIT works. To be integrated in distribution — dabi / bitbucketweb
- eit hessian works with caching of solution and adjoints — dabi / bitbucketweb
- EIT field distribution works with MPI — dabi / bitbucketweb
- added possibility to add real fields by expression — dabi / bitbucketweb
- disabled plotting if not available — dabi / bitbucketweb
- distributions work on cluster — dabi / bitbucketweb
- made EIT solver into a class — dabi / bitbucketweb
- working on validators — dabi / bitbucketweb
- working on saa — dabi / bitbucketweb
- implementing gradient based validators — dabi / bitbucketweb
- validators... — dabi / bitbucketweb
- working on adaptivity algorithm — dabi / bitbucketweb
- working on the adaptivity algorithm — dabi / bitbucketweb
- adding adaptivity options to tmap-tm — dabi / bitbucketweb
- working on launching script tmap-tm — dabi / bitbucketweb
- changing builder classes to imbed parameters and take distributions on — dabi / bitbucketweb
- going through banana example — dabi / bitbucketweb
- working on adaptivity on banana — dabi / bitbucketweb
- adaptivity on banana almost work — dabi / bitbucketweb
- adaptivity works on banana. a lot to do yet... — dabi / bitbucketweb
- improving parallelization — dabi / bitbucketweb
- splitted first variation computation for better parallelization — dabi / bitbucketweb
- adaptivity works on banana without hyper — dabi / bitbucketweb
- working on low-rank approximation of Hessians — dabi / bitbucketweb
- working on laplace approximation for Bayesian inverse problems, where — dabi / bitbucketweb
- working on low-rank approximation of covariance in bayesian problem — dabi / bitbucketweb
- working on low-rank approximation — dabi / bitbucketweb
- added logging information in postprocessing script — dabi / bitbucketweb
- low-rank Laplace approximation works — dabi / bitbucketweb
- applying Laplace to EIT — dabi / bitbucketweb
- working on composition of Likelihood with maps — dabi / bitbucketweb
- working on composition of Likelihood with maps — dabi / bitbucketweb
- composition of functions and map now is possible. working on laplace of — dabi / bitbucketweb
- working on laplace approximation of EIT — dabi / bitbucketweb
- debugging action of Hessian — dabi / bitbucketweb
- checking hessian action.. — dabi / bitbucketweb
- working on finite difference test for Hessian — dabi / bitbucketweb
- checking Hessian for distribution — dabi / bitbucketweb
- fixed withening script. Now action of Hessian works with MPI — dabi / bitbucketweb
- working on EIT adaptivity — dabi / bitbucketweb
- added missing functions to LinearTransportMap. Added unit tests for it — dabi / bitbucketweb
- modified caching of EIT solutions so that the cache is now pickable. — dabi / bitbucketweb
- added verbosity option in adaptivity algorithms and fixed bug in action — dabi / bitbucketweb
- added intermediate storage capability for adaptivity — dabi / bitbucketweb
- added output for lower and upper bounds in saa — dabi / bitbucketweb
- fixed bug in tmap-tm and in test_distribution.py for EIT — dabi / bitbucketweb
- added distributed sampling for MC sampling in minimize_kl_divergence — dabi / bitbucketweb
- fixed sampling for inverse maps from samples (disabled distributed — dabi / bitbucketweb
- fixed distributed sampling for linear span kl minimization — dabi / bitbucketweb
- fixed action Hessian with regularization — dabi / bitbucketweb
- simplified regularization of action hessian regularization — dabi / bitbucketweb
- fixed relative tolerance in validator — dabi / bitbucketweb
- fixed relative tolerance in validator — dabi / bitbucketweb
- remove unnecessary output form EIT — dabi / bitbucketweb
- changed active variable indicator to E[|x|] — dabi / bitbucketweb
- tryna generate non-gaussian data — rebeccae.morrison / bitbucketweb
- working on reload feature for tmap-tm — dabi / bitbucketweb
- reloading done for first variation adaptivity. to be checked in other — dabi / bitbucketweb
- added some output to First variation algorithm — dabi / bitbucketweb
- fixed restarting and grad_x for target in EIT — dabi / bitbucketweb
- added field full_basis_list to function approximations, to be used in — dabi / bitbucketweb
- fixed adaptivity accordingly to previous full_basis_list at the function — dabi / bitbucketweb
- running aerostruct and copula data — rebeccae.morrison / bitbucketweb
- committing data samples for copula data — rebeccae.morrison / bitbucketweb
- fixed first variation computation — dabi / bitbucketweb
- added plot sample for post process in EIT — dabi / bitbucketweb
- added a non-gaussian chain dataset — rebeccae.morrison / bitbucketweb
- added full_basis_list feature to xml map structure loading — dabi / bitbucketweb
- fixed full_basis_list to save in memory allocation — dabi / bitbucketweb
- minor testing datasets changes — rebeccae.morrison / bitbucketweb
- check for product distribution — rebeccae.morrison / bitbucketweb
- removed matplotlib from imports — rebeccae.morrison / bitbucketweb
- scikit-sparse reqs — rebeccae.morrison / bitbucketweb
- changed googleanalytics requirements — dabi / bitbucketweb
- starting jupyter notebook for sing — rebeccae.morrison / bitbucketweb
- looking at copula data inverse covariance — rebeccae.morrison / bitbucketweb
- working on coarser test case — dabi / bitbucketweb
- fixed several bugs in adaptivity and tests — dabi / bitbucketweb
- fixed get state in first variation builder — dabi / bitbucketweb
- added line search options in tmap-tm — dabi / bitbucketweb
- fixed kladaptivity serialization and regression regularization — dabi / bitbucketweb
- fixed gx_gt_kl batched evaluation — dabi / bitbucketweb
- added sing notebook example — rebeccae.morrison / bitbucketweb
- fixing adaptivity here and there.. — dabi / bitbucketweb
- integrated documentation for SING algorithm — dabi / bitbucketweb
- added postprocessing functionalities for adaptivity — dabi / bitbucketweb
- added double circle phantom — dabi / bitbucketweb
- fixed store function in tmap-tm — dabi / bitbucketweb
- added argument for line search delta — dabi / bitbucketweb
- added delta parameter for line search — dabi / bitbucketweb
- fixed documentation SING — dabi / bitbucketweb
- fixing unit tests; — dabi / bitbucketweb
- fixed laplace approximation starting point — dabi / bitbucketweb
- documenting fv adaptivity — dabi / bitbucketweb
- preparing release v2.0b0 — dabi / bitbucketweb
- v2.0b0: ready for unit-testing — dabi / bitbucketweb
- fixed matplotlib dependence — dabi / bitbucketweb
- fixed process_time PyV3 PyV2 — dabi / bitbucketweb
- fixed processtime name — dabi / bitbucketweb
- fixing bugs for release — dabi / bitbucketweb
- working to fix grax_gradt_kl — dabi / bitbucketweb
- fixed grad_x of first variation — dabi / bitbucketweb
- subtract identity_coeffs + l1_reg to component kl — rsb / bitbucketweb
- removed dependency on FileNotFoundError for compatibility with py2 — dabi / bitbucketweb
- fixed compatibility issue with py2 — dabi / bitbucketweb
- removed unnecessary folders in Examples and updated mirroring script — dabi / bitbucketweb
- added algorithms documentation section — dabi / bitbucketweb
- updated script for public mirroring — dabi / bitbucketweb
- throwing an error if ders!=[0,1] used in decoupled LinearSpan min_kl — dabi / bitbucketweb
#11 (Jan 9, 2018, 3:28:30 PM)
- conditional import of h5py in postprocess scripts — dabi / bitbucketweb
- fixed bug in usage of einsum due to update to numpy >= 1.14 — dabi / bitbucketweb
#9 (Dec 13, 2017, 9:51:44 PM)
- working on slurm submission — dabi / bitbucketweb
- fixed tensordot in integrated squared. This saves memory and improves — dabi / bitbucketweb
- modified runner — dabi / bitbucketweb
- done with plots for the paper! — dabi / bitbucketweb
- fixed plotting for 9000 steps — dabi / bitbucketweb
- working on documentation of published data — dabi / bitbucketweb
- done with documentation of results 945. Working on 9009 steps — dabi / bitbucketweb
- adding results 9009 steps on documentation — dabi / bitbucketweb
- added data and figures 9009 steps — dabi / bitbucketweb
- postprocessing script now adding events on time series — dabi / bitbucketweb
- done with documentation. todo: fix unittests — dabi / bitbucketweb
- added cython dependency for pyhmc — dabi / bitbucketweb
- attempt to fix pyhmc dependencies... — dabi / bitbucketweb
- pyhmc is now optional — dabi / bitbucketweb
- fixed external import in Samplers — dabi / bitbucketweb
- fixed test_L2_misfit and test_scripts — dabi / bitbucketweb
- fixed MarkovOneCompoent in test_distributions — dabi / bitbucketweb
- fixed (1) test L2_min for integrated squared (2) sequential inference — dabi / bitbucketweb
- fixed import of mpi_map — dabi / bitbucketweb
- reduced order in test non linear sequential inference — dabi / bitbucketweb
- updated documentation with optional requirement of pyhmc — dabi / bitbucketweb
- removed Docs form MANIFEST.in — dabi / bitbucketweb
- fixed gradient and hessian of inverse exponential map — dabi / bitbucketweb
#8 (Nov 19, 2017, 7:15:51 AM)
- fixed typo in documentation data-assimilation — dabi / bitbucketweb
- fixed typo on data-assimialtion model example — dabi / bitbucketweb
#7 (Nov 19, 2017, 7:11:42 AM)
- added a postprocess for the stochastic volatility. To be moved in the — dabi / bitbucketweb
- working on figures for poster — dabi / bitbucketweb
- working on last figures — dabi / bitbucketweb
- improved post-process for stochastic volatility. TODO: restructure all — dabi / bitbucketweb
- satellite changes — rebeccae.morrison / bitbucketweb
- dont need to append to log — rebeccae.morrison / bitbucketweb
- updated public mirror link — dabi / bitbucketweb
- updated public mirror link — dabi / bitbucketweb
- updated mirroring script — dabi / bitbucketweb
- updated mirroring script — dabi / bitbucketweb
- jenkins scripts and mirroring scripts — dabi / bitbucketweb
- shortened mpi-lag — dabi / bitbucketweb
- mirroring script update — dabi / bitbucketweb
- added requirements files and updated test-testpypi script — dabi / bitbucketweb
- updated manifest — dabi / bitbucketweb
- updated mirroring script — dabi / bitbucketweb
- updated testpypi script — dabi / bitbucketweb
- added google analytics — dabi / bitbucketweb
- prepared Jenkins test-pypi script and updated to version v1.0b1 — dabi / bitbucketweb
- prepared pypi-upload script — dabi / bitbucketweb
- updated classifiers — dabi / bitbucketweb
- updated permissions test-pypi — dabi / bitbucketweb
- added archiving option to mirroring script and removal of ol public — dabi / bitbucketweb
- updated website and readme — dabi / bitbucketweb
- fixing api — dabi / bitbucketweb
- completed web-site — dabi / bitbucketweb
- modified upload script to accomodate for bakups — dabi / bitbucketweb
- updated version on conf file — dabi / bitbucketweb
- updated requirements file — dabi / bitbucketweb
- updated installation procedure and added toggle sections — dabi / bitbucketweb
- updated sphinx requirements — dabi / bitbucketweb
- updated docs MonotLinSpanApprox and increased size UML diagrams — dabi / bitbucketweb
- bug fixed in grad_a_hess_x_log_det_grad_x, matrix slots matplotlib files — rebeccae.morrison / bitbucketweb
- updated documentation — dabi / bitbucketweb
- updating documentation — dabi / bitbucketweb
- improved slides for BOD example — dabi / bitbucketweb
- updated bod with figures and stochastic volatility — dabi / bitbucketweb
- imporved upload script and fixed visualization problem in bod — dabi / bitbucketweb
- working on railway model — dabi / bitbucketweb
- working on railway model — dabi / bitbucketweb
- model to be fixed (unstable) — dabi / bitbucketweb
- model unstable.... — dabi / bitbucketweb
- the simpler model works — dabi / bitbucketweb
- random disturbance works — dabi / bitbucketweb
- redesigned model structure — dabi / bitbucketweb
- refactoring the inference algorithms — dabi / bitbucketweb
- fixes #76 — rebeccae.morrison / bitbucketweb
- working on linear filter/smoothers — dabi / bitbucketweb
- modified tolerances — dabi / bitbucketweb
- working on linear Gaussian transition distributions — dabi / bitbucketweb
- working on Linear filter/smoother — dabi / bitbucketweb
- working on conditional probabilities — dabi / bitbucketweb
- working on factorized distributions — dabi / bitbucketweb
- factorized distribution works — dabi / bitbucketweb
- independent likelihood added — dabi / bitbucketweb
- working on stochastic volatility test case — dabi / bitbucketweb
- derivatives of stoc vol works. TODO: fix the Markov components — dabi / bitbucketweb
- working on markov components — dabi / bitbucketweb
- working on hessian of markov component... — dabi / bitbucketweb
- fixed hessian for markov component and checked stoch vol example works — dabi / bitbucketweb
- working on statistical models — dabi / bitbucketweb
- working on distribution docs — dabi / bitbucketweb
- moved FactorizedDistribution to DistributionBase — dabi / bitbucketweb
- working on loglikelihoods — dabi / bitbucketweb
- Additive models and addive linear Gaussian models added in the — dabi / bitbucketweb
- made a dedicated submodule for likelihoods — dabi / bitbucketweb
- moved likelihoods out of functionals (more intuitive) — dabi / bitbucketweb
- working on linear inertial navigation system model — dabi / bitbucketweb
- working on assimilation example — dabi / bitbucketweb
- fixing markov component — dabi / bitbucketweb
- ok tests markov component — dabi / bitbucketweb
- AR1TransDistr works — dabi / bitbucketweb
- done with data assimilation construction example — dabi / bitbucketweb
- Updated version: v1.0b2 — dabi / bitbucketweb
- added missing files and removed api-files which must be automatically — dabi / bitbucketweb
- updated ignore file — dabi / bitbucketweb
- fixing import issue — dabi / bitbucketweb
- fixing import issue — dabi / bitbucketweb
- working on Kalman filter — dabi / bitbucketweb
- setting up the INS example in order to run the Kalman filter on it... — dabi / bitbucketweb
- working on linear smoother — dabi / bitbucketweb
- working on linear smoother — dabi / bitbucketweb
- fixing the smoothing... — dabi / bitbucketweb
- linear smoother works. Figure out how to quickly get state covariances — dabi / bitbucketweb
- smoothing covariances work. Now working on smoothing means — dabi / bitbucketweb
- working on postprocess smoothing with different lags — dabi / bitbucketweb
- fixed lag smoother works — dabi / bitbucketweb
- refactored all references to old smoother/filters — dabi / bitbucketweb
- working on distribution for filtering — dabi / bitbucketweb
- working on railway vehicle example — dabi / bitbucketweb
- working on linear filtering — dabi / bitbucketweb
- fixed computation of square root for almost singular covariances in — dabi / bitbucketweb
- fixed computation of square root for almost singular covariances in — dabi / bitbucketweb
- working on example — dabi / bitbucketweb
- working on parametric Railway model — dabi / bitbucketweb
- working on linear model with hyper-parameters — dabi / bitbucketweb
- working on linear models with hyper-parameters — dabi / bitbucketweb
- working on ... — dabi / bitbucketweb
- working on parametric distributions and transition densities — dabi / bitbucketweb
- working on gradient of Kalman filter — dabi / bitbucketweb
- in a maze of einsums... — dabi / bitbucketweb
- working on gradients vehicle model — dabi / bitbucketweb
- working on gradients for transition matrices — dabi / bitbucketweb
- the gradient does not work... — dabi / bitbucketweb
- working on gradients!! — dabi / bitbucketweb
- added notebook py file — dabi / bitbucketweb
- fixed coeff properties and working on gradient of linear filter... — dabi / bitbucketweb
- Fixed the gradients (sensitivities) of the linear filter!!!! — dabi / bitbucketweb
- working on parameter estimation problem — dabi / bitbucketweb
- Fixes #77. Implemented function/gradient evaluation and minimization — dabi / bitbucketweb
- now optimization is done with function/gradient function — dabi / bitbucketweb
- working on data generation and higher dimensional cases — dabi / bitbucketweb
- added fungrad option on scripts — dabi / bitbucketweb
- fixing some unittest errors — dabi / bitbucketweb
- this could all be wasted time.. — dabi / bitbucketweb
- brancolando nel buio... — dabi / bitbucketweb
- making progress??? — dabi / bitbucketweb
- same change done on ConditionallyGaussianDistribution should be done on — dabi / bitbucketweb
- wrapping up on railways 1d — dabi / bitbucketweb
- going on with 1d — dabi / bitbucketweb
- working again on gradient marginal loglikelihood — dabi / bitbucketweb
- fixed marginal log likelihood!!! — dabi / bitbucketweb
- fixing for tests — dabi / bitbucketweb
- working on scripts for high-dimensional problem... — dabi / bitbucketweb
- fixing unit tests — dabi / bitbucketweb
- modified BOD example to show marginals — dabi / bitbucketweb
- some updates on tutorial — dabi / bitbucketweb
- working on new figs for paper with up-to-date software — dabi / bitbucketweb
- fixed logging in scripts — dabi / bitbucketweb
- fixed full rbf in defaults — dabi / bitbucketweb
- fixed script sequential — dabi / bitbucketweb
- fixed print in sequential script and fixed parallel implementation... — dabi / bitbucketweb
- additional fix in sequential script — dabi / bitbucketweb
- additional fix in sequential script — dabi / bitbucketweb
- working on the components iterator — dabi / bitbucketweb
- most of the pieces are in place. to be tested — dabi / bitbucketweb
- debugging — dabi / bitbucketweb
- actual implementation pass unit test_kl_minimization — dabi / bitbucketweb
- it works on the tutorial examples — dabi / bitbucketweb
- adding data for tutorial inv-stocvol — dabi / bitbucketweb
- fixed bug in linear span kl minimization — dabi / bitbucketweb
- fixed bug in parallel inverse map from samples — dabi / bitbucketweb
- working on a fix for linear span solver by component — dabi / bitbucketweb
- fixed all (?) bugs on the linear span from samples/ — dabi / bitbucketweb
- fixed bug on linear span solve due to I19 merge — dabi / bitbucketweb
- porting plots from DEPREC branch to this up-to-date branch — dabi / bitbucketweb
- added btc/usd data — dabi / bitbucketweb
- working on stoc vol with 10^4 data. working on tmap-max-likelihood — dabi / bitbucketweb
- working on stoc vol with 10^4 data. working on tmap-max-likelihood — dabi / bitbucketweb
- going on with scripts for plots — dabi / bitbucketweb
- going on with scripts for plots — dabi / bitbucketweb
- done with plotting routines — dabi / bitbucketweb
- working on plotts — dabi / bitbucketweb
- working on basic adaptivity in order to get it into the low-dim paper — dabi / bitbucketweb
- working on basic adaptivity in order to get it into the low-dim paper — dabi / bitbucketweb
- testing new builders — dabi / bitbucketweb
- sequential inference tested with standard builder — dabi / bitbucketweb
- running sequential algorithm with sequential adaptivity — dabi / bitbucketweb
- improved scripts for running sequential inference — dabi / bitbucketweb
- updated runner — dabi / bitbucketweb
- added plot exchanges — dabi / bitbucketweb
- added functionalities to tmap-sequential-tm script — dabi / bitbucketweb
- started with regression adaptivityu — dabi / bitbucketweb
- .... — dabi / bitbucketweb
- calibrating parameters in stoc vol — dabi / bitbucketweb
- finding correct configuration — dabi / bitbucketweb
- working on 945 test case. Added tolerance driven adaptivity — dabi / bitbucketweb
- working on script for 945 observations — dabi / bitbucketweb
- working on 945 configuration and figures — dabi / bitbucketweb
- ready to plot? — dabi / bitbucketweb
- restructured CLI — dabi / bitbucketweb
- restructuring scripts — dabi / bitbucketweb
- working on trimmed postprocess — dabi / bitbucketweb
- restructured CLI commands and added trimming functionalities for — dabi / bitbucketweb
- updated exchange plotting — dabi / bitbucketweb
- added dates in plots — dabi / bitbucketweb
- added metropolis hastings and MH within Gibbs — dabi / bitbucketweb
- working for figures 500 observations — dabi / bitbucketweb
- fixed the default constructor, using Hermite poly for non integrated — dabi / bitbucketweb
- fixed External.py import — dabi / bitbucketweb
- preparing runner for slurm — dabi / bitbucketweb
- setting up slurm — dabi / bitbucketweb
- modified defaults integrated squared. Now using — dabi / bitbucketweb
- fixing typos — dabi / bitbucketweb
#5 (Apr 30, 2017, 7:24:03 PM)
- New stoc vol file — spantini / bitbucketweb
- Done with implementation stochastic volatility with no hyper-parameters — spantini / bitbucketweb
- Stochastic volatility — spantini / bitbucketweb
- answers to Alessio comments — dabi / bitbucketweb
- started with solver — spantini / bitbucketweb
- stoc vol works. TODO: implement diagnostics — dabi / bitbucketweb
- started with total order implementation — dabi / bitbucketweb
- working on MixedOrder class. — dabi / bitbucketweb
- working on mixed order — dabi / bitbucketweb
- working on MixedOrder — dabi / bitbucketweb
- Added diagnostic routines — spantini / bitbucketweb
- merged into toolbox — dabi / bitbucketweb
- working on stocVol example — dabi / bitbucketweb
- stocVol — dabi / bitbucketweb
- stocVol — dabi / bitbucketweb
- added matplotlib dependency — dabi / bitbucketweb
- working on banana example — dabi / bitbucketweb
- documenting banana — dabi / bitbucketweb
- working on banana — dabi / bitbucketweb
- working on banana example — dabi / bitbucketweb
- banana example needs documentation regarding diagnostics — dabi / bitbucketweb
- added some diagnostics — dabi / bitbucketweb
- working on laplace_approximation function — dabi / bitbucketweb
- laplace — dabi / bitbucketweb
- working on optimizer — dabi / bitbucketweb
- Laplace approx done. To be tested. — dabi / bitbucketweb
- working on FrozenGaussian with precision input — dabi / bitbucketweb
- tests passed for new version of GaussianDensity. TODO: add unittests — dabi / bitbucketweb
- done precision tests — dabi / bitbucketweb
- laplace works. to finish tests — dabi / bitbucketweb
- laplace works. to finish tests — dabi / bitbucketweb
- laplace works. to finish tests — dabi / bitbucketweb
- Laplace ready — dabi / bitbucketweb
- test optimizer — spantini / bitbucketweb
- working on optimizer — spantini / bitbucketweb
- fixed optimizer — dabi / bitbucketweb
- optimizer works! — dabi / bitbucketweb
- added some docs on banana — dabi / bitbucketweb
- added some logging in the Diagnostic module. To be added all over. — dabi / bitbucketweb
- newton_cglu_optimizer — spantini / bitbucketweb
- added function niceplot — spantini / bitbucketweb
- Added class TransportMap — spantini / bitbucketweb
- class TransportMap integrated — dabi / bitbucketweb
- Init maps — spantini / bitbucketweb
- working on the CommonBase LinearSpan TM — dabi / bitbucketweb
- Removed duplicate pullback functions — spantini / bitbucketweb
- working on CommonBase LinearSpan Map — dabi / bitbucketweb
- linear transport map — spantini / bitbucketweb
- fixed naming of TransportMaps — spantini / bitbucketweb
- working on CommonBase LinearSpan Map — dabi / bitbucketweb
- working on CommonBase LinearSpan Map — dabi / bitbucketweb
- Done CommonBasis LinearSpan Map. Moving to — dabi / bitbucketweb
- working on CommonBasisLinearSpanApproximation — dabi / bitbucketweb
- working on CommonBasisLinearSpanApproximation — dabi / bitbucketweb
- working on CommBase Map — dabi / bitbucketweb
- moving function evaluation and gradients into LineaSpanAppoximation — dabi / bitbucketweb
- Done with linear map class. Now moving to unit test — spantini / bitbucketweb
- in process of migrating functions from FullLinearSpan to LinearSpan with — dabi / bitbucketweb
- moved most of the stuff to LinearSpan — dabi / bitbucketweb
- moved most of the stuff to LinearSpan — dabi / bitbucketweb
- LinearSpanApproximations ready. Move to TriangularTransportMap — dabi / bitbucketweb
- Minor changes — spantini / bitbucketweb
- changed uml — dabi / bitbucketweb
- Added plotAlignedSliceMap — spantini / bitbucketweb
- Added niceContour, plot2density and testBananaPullback — spantini / bitbucketweb
- added testBananaPullback — spantini / bitbucketweb
- fixed l2 regularization — dabi / bitbucketweb
- rotated banana improved — dabi / bitbucketweb
- working on #36. Done with Transport maps? — dabi / bitbucketweb
- Banana example linear span — spantini / bitbucketweb
- some mods on the examples — dabi / bitbucketweb
- #26 working on TM densities test cases — dabi / bitbucketweb
- working on test cases — dabi / bitbucketweb
- working on test cases — dabi / bitbucketweb
- working on density test cases — dabi / bitbucketweb
- working on test cases for densities — dabi / bitbucketweb
- working on dens test cases — dabi / bitbucketweb
- working on tests densities — dabi / bitbucketweb
- transport map densities tests added. Still some problems on the linear — dabi / bitbucketweb
- added tests for kl_divergence — dabi / bitbucketweb
- removed old tests structure — dabi / bitbucketweb
- #26 fixed all unittests. TODO add test for LinearTransportMap (Alessio) — dabi / bitbucketweb
- updating UML graph and TransportMap classes — dabi / bitbucketweb
- Fixes #27: UML graph updated — dabi / bitbucketweb
- fixed import name for CommonBasisLinearSpanTriangularTransportMap — dabi / bitbucketweb
- relaxed target eps in MC tests for density unittests — dabi / bitbucketweb
- Jenkins test develop script added — dabi / bitbucketweb
- fixed test_develop chmod — dabi / bitbucketweb
- #25 restructuring precomp strategy in order to enrich the precomp — dabi / bitbucketweb
- #25 restructuring precomp strategy in order to enrich the precomp — dabi / bitbucketweb
- #25 restructuring precomp strategy in order to enrich the precomp — dabi / bitbucketweb
- uni-variate preallocation works for linear system — dabi / bitbucketweb
- working on TransportMapBase to allow both uni-variate and multi-variate — dabi / bitbucketweb
- working on TransportMapBase to allow both uni-variate and multi-variate — dabi / bitbucketweb
- #25 linear span transport maps with precomputation of uni-variate and — dabi / bitbucketweb
- working on IntegratedExp approximation — dabi / bitbucketweb
- working on IntegratedExp approximation — dabi / bitbucketweb
- working on IntegratedExp approximation — dabi / bitbucketweb
- working on precomputation in integrated exponential. Some tests fail... — dabi / bitbucketweb
- #25 preomputation on integrated exponential works! Make comprehensive — dabi / bitbucketweb
- fixed FrozenFunction precomp functions — dabi / bitbucketweb
- KLdivergence example with options — dabi / bitbucketweb
- working on common basis — dabi / bitbucketweb
- working on common basis — dabi / bitbucketweb
- fixing common basis — dabi / bitbucketweb
- CommonBasisLinearSpan ready. TODO: unittests — dabi / bitbucketweb
- making unittests for CommonBasisLinearSpan — dabi / bitbucketweb
- fixed stoc Vol with constant term — dabi / bitbucketweb
- CommonBasis LinearSpan works. Moving to IntegratedExponential — dabi / bitbucketweb
- CommonBasisIntExp started. precomp_evaluate done — dabi / bitbucketweb
- IntExpFunctionApproximation precomputation structure refactorization — dabi / bitbucketweb
- refactored IntExpFuncApproximation — dabi / bitbucketweb
- working on CommonBasis IntegExp — dabi / bitbucketweb
- CommonBasis IntegratedExponential works — dabi / bitbucketweb
- KLdivergence example now uses CommonBasis implementation — dabi / bitbucketweb
- Fixes #25. — dabi / bitbucketweb
- updated banana example with common basis — dabi / bitbucketweb
- TotalOrder approximation added. Fix the integration into IntExp — dabi / bitbucketweb
- Total order working on test_transportmaps. TODO: Add — dabi / bitbucketweb
- Total Order unittests done — dabi / bitbucketweb
- fixed CommonBasis precomputation, adding to_compute_flag — dabi / bitbucketweb
- Fixes #1. Total order truncation implemented. Updated KLdivergence — dabi / bitbucketweb
- Added BOD model and ConditionedDiffusion folders — spantini / bitbucketweb
- fixed conflict on testBananaPullback — dabi / bitbucketweb
- started with new branch — rebeccae.morrison / bitbucketweb
- fixed bug on GaussianDensity rvs — rebeccae.morrison / bitbucketweb
- fixed bug on GaussianDensity rvs — dabi / bitbucketweb
- working on stochastic volatility example — dabi / bitbucketweb
- Added joint BOD model — spantini / bitbucketweb
- reshaping StochasticVolatility example — dabi / bitbucketweb
- BOD model works. — dabi / bitbucketweb
- Stochastic volatility issuing command changed — dabi / bitbucketweb
- #31 started optional vectorization of expectations in — dabi / bitbucketweb
- Notes composition map Stoc Vol — spantini / bitbucketweb
- Added banana folder — spantini / bitbucketweb
- starting with stoc vol composition — dabi / bitbucketweb
- split map generation from StochasticVolatility files — dabi / bitbucketweb
- Added gradients composition — spantini / bitbucketweb
- Added gradients composition — spantini / bitbucketweb
- Added Markov Component Stoc Vol — spantini / bitbucketweb
- stoc vol composition almost there.... — dabi / bitbucketweb
- stoc vol composition runs. TODO: compose all the maps — dabi / bitbucketweb
- working on lifting and overall pullback — dabi / bitbucketweb
- stochastic volatility composition works!!! — dabi / bitbucketweb
- refactoring the vectorization in several routines... to be finished. — dabi / bitbucketweb
- #31 refactoring to allow computations in batches — dabi / bitbucketweb
- refactored everything to execute in batches defined by a list (iterable) — dabi / bitbucketweb
- new implementation works on old unit tests — dabi / bitbucketweb
- current implementation works on unittests and KLdivergence example test — dabi / bitbucketweb
- setting up BOD model for higher dimension... — dabi / bitbucketweb
- Opens #20. Added logging capabilities in the minimize_kl_divergence — dabi / bitbucketweb
- working on BOD higher order — dabi / bitbucketweb
- working on bod — dabi / bitbucketweb
- working on KL divergence arctan function — dabi / bitbucketweb
- cleaned KL divergence file — dabi / bitbucketweb
- re-organized predefined densities — dabi / bitbucketweb
- added corresponding changes also in the LinearTransportMap class — dabi / bitbucketweb
- working on the tilted banana — dabi / bitbucketweb
- updating LinearTransportMap — dabi / bitbucketweb
- updating LinearTransportMap — dabi / bitbucketweb
- working on banana — dabi / bitbucketweb
- added default classes for Isotropic transport maps — dabi / bitbucketweb
- added default classes for Isotropic transport maps — dabi / bitbucketweb
- using default functions all over — dabi / bitbucketweb
- working on rotated banana — dabi / bitbucketweb
- #35 working on cached evaluations low-level — dabi / bitbucketweb
- #35 low-level caching for function evaluation implemented. TODO: check — dabi / bitbucketweb
- removed some all-equal statements — dabi / bitbucketweb
- changed handling of indices — dabi / bitbucketweb
- caching low level partial_xd done — dabi / bitbucketweb
- changed array_equal withing function evaluation with a same_coeffs_flag — dabi / bitbucketweb
- fixed FrozenTriangularTransportMaps — dabi / bitbucketweb
- Gradients conditional diffusion — spantini / bitbucketweb
- working on conditioned diffusion script. fixed inputs to StocVol — dabi / bitbucketweb
- conditioned diffusion running script ready — dabi / bitbucketweb
- using default TransportMap generation all over the place — dabi / bitbucketweb
- Implemented gradients Markov Component Cond Diff — spantini / bitbucketweb
- working on fixing stochastic volatility components. TODO: Fix the — dabi / bitbucketweb
- fixed full transport map with extra same_coeffs_flag — dabi / bitbucketweb
- Debugging Hessian CondDiff — spantini / bitbucketweb
- Fixed gradient Markov Component Conditioned Diffusion — spantini / bitbucketweb
- Added composition maps for conditione diffusion — spantini / bitbucketweb
- working on conditioned diffusion — dabi / bitbucketweb
- FullTransportMap does not need to redefine pullback and pushforward — dabi / bitbucketweb
- cond diffusion works. better parametrization is needed (RBF?) — dabi / bitbucketweb
- can recover precision matrix in 3d — rebeccae.morrison / bitbucketweb
- updating UML diagram — dabi / bitbucketweb
- map from samples now has a couple more distributions to sample from — rebeccae.morrison / bitbucketweb
- mapFromSamples also plots histograms of pullback against original — rebeccae.morrison / bitbucketweb
- removed "TranportMaps." tag from index — dabi / bitbucketweb
- compare map to analytical — rebeccae.morrison / bitbucketweb
- histogram plots a bit nicer — rebeccae.morrison / bitbucketweb
- working on using RBF in banana example — dabi / bitbucketweb
- preparing for high-level caching. Restructured precomp structure — dabi / bitbucketweb
- high-level caching is done. TODO: check it is doing what is required to — dabi / bitbucketweb
- the high-level caching and the computation in batches/parallel need to — dabi / bitbucketweb
- mfs looking good, need support map still — rebeccae.morrison / bitbucketweb
- updated interface min_kl_div in TransportMapBase — dabi / bitbucketweb
- removed low-level caching. added high-level caching. TODO: check that — dabi / bitbucketweb
- added test case for high-level caching. change idxs_list to idxs_slice — dabi / bitbucketweb
- test cases work. try it out on examples and then test performaces on BOD — dabi / bitbucketweb
- works on examples kldivergence. Check that caching is actually used — dabi / bitbucketweb
- #35 high-level caching successful. TODO: profile on the BOD example. — dabi / bitbucketweb
- turned pushforward to exp(log_pushforward) — dabi / bitbucketweb
- experimenting on the banana example — dabi / bitbucketweb
- fixed bug in TransportMapBase — dabi / bitbucketweb
- removed flag vectorize. batch_size determines whether vectorize or not — dabi / bitbucketweb
- updated examples without vectorize flags — dabi / bitbucketweb
- fixed kl_divergence routines with batches. list -> slice — dabi / bitbucketweb
- working on low-level caching — dabi / bitbucketweb
- working on low-level caching — dabi / bitbucketweb
- low-level caching works on test cases — dabi / bitbucketweb
- trying to improve the hess computation — dabi / bitbucketweb
- alternative solution — dabi / bitbucketweb
- added grad_a_squared with precomputed VVT — dabi / bitbucketweb
- removed same_coeffs_flag and added caching for partial_xd — dabi / bitbucketweb
- working on the banana — dabi / bitbucketweb
- reverted to grad_a instead of grad_a_squared — dabi / bitbucketweb
- polishing hess_a in IntegExp — dabi / bitbucketweb
- polishing hess_a — dabi / bitbucketweb
- polishing hessian little by little — dabi / bitbucketweb
- mfsSandia includes transform — rebeccae.morrison / bitbucketweb
- some improvements in hess_a_log_pullback — dabi / bitbucketweb
- working on banana — dabi / bitbucketweb
- fixed import to numpy.linalg — dabi / bitbucketweb
- fixed hessian with regularization — dabi / bitbucketweb
- adding missing files to conditioned diffusion — dabi / bitbucketweb
- working on stoch diff — dabi / bitbucketweb
- working on conditioned diffusion — dabi / bitbucketweb
- improving visualization in conditioned diffusion — dabi / bitbucketweb
- plot in place conditioned diffusion — dabi / bitbucketweb
- working on value at risk problem — dabi / bitbucketweb
- working on the banana — dabi / bitbucketweb
- working on banana — dabi / bitbucketweb
- adding missing files to conditioned diffusion — dabi / bitbucketweb
- working on stoch diff — dabi / bitbucketweb
- working on conditioned diffusion — dabi / bitbucketweb
- improving visualization in conditioned diffusion — dabi / bitbucketweb
- plot in place conditioned diffusion — dabi / bitbucketweb
- working on value at risk problem — dabi / bitbucketweb
- remove rare events — dabi / bitbucketweb
- starting the sparsity algorithm — rebeccae.morrison / bitbucketweb
- sandia samples: now asks whether right or left-tailed — rebeccae.morrison / bitbucketweb
- plot samples includes 1d analytic form — rebeccae.morrison / bitbucketweb
- sandia1d computes analytical pdf and kl between that and computed — rebeccae.morrison / bitbucketweb
- kl div in 1d needs approximation help — rebeccae.morrison / bitbucketweb
- pullback density in progress — rebeccae.morrison / bitbucketweb
- fixed pullback — rebeccae.morrison / bitbucketweb
- trying MSE ? instead of KL — rebeccae.morrison / bitbucketweb
- mse computation in development — rebeccae.morrison / bitbucketweb
- Open #8 — dabi / bitbucketweb
- added derivative checks tests for pushforward transport map densities. — dabi / bitbucketweb
- building up example for inverse construction — dabi / bitbucketweb
- set up kl using TM density — rebeccae.morrison / bitbucketweb
- examples work derivative free — dabi / bitbucketweb
- creating inverse gradients — dabi / bitbucketweb
- working on gradient — dabi / bitbucketweb
- checking gradient — dabi / bitbucketweb
- back to kl — rebeccae.morrison / bitbucketweb
- gradient inverse map works — dabi / bitbucketweb
- implemented gradient. to be checked with tests and stochastic volatility — dabi / bitbucketweb
- grad_a_log_pushforward passes the unit test. Check signs and fix — dabi / bitbucketweb
- grad_a_log_pushforward passes the unit test. Check signs and fix — dabi / bitbucketweb
- unit tests passed. Remove precomputation in minimization in order to — dabi / bitbucketweb
- inverse solution works. todo: profile to see whether some computations — dabi / bitbucketweb
- partition densities off — rebeccae.morrison / bitbucketweb
- working on banana example — dabi / bitbucketweb
- added no-plot option — dabi / bitbucketweb
- Open #19: written test functions for map from samples. The problem has — dabi / bitbucketweb
- maps from samples tests work fine — dabi / bitbucketweb
- working on composite and inverse transport maps, in order to do — dabi / bitbucketweb
- working on the missing composition functions — dabi / bitbucketweb
- adding missing functions — dabi / bitbucketweb
- added grad_x and hess_x functions to Composite maps. — dabi / bitbucketweb
- working on the banana example. transform the target to the pushforward — dabi / bitbucketweb
- adding necessary inverse functions for pushforward — dabi / bitbucketweb
- fixing banana with composition of maps — dabi / bitbucketweb
- updated UML diagram — dabi / bitbucketweb
- banana example works with composite densities — dabi / bitbucketweb
- mfs tests has laplace, needs reorg — rebeccae.morrison / bitbucketweb
- test cases using randomly generated coefficients work — dabi / bitbucketweb
- started with direct construction of the inverse sv transport. Added — dabi / bitbucketweb
- added default also for linear span approximations — dabi / bitbucketweb
- working on sv inverse transport — dabi / bitbucketweb
- woring on stoc vol — dabi / bitbucketweb
- working on cond diffustion — dabi / bitbucketweb
- small changes in defaluts — dabi / bitbucketweb
- Default option poly and rbf — dabi / bitbucketweb
- added rbf/poly option to cond diffusion — dabi / bitbucketweb
- working on storage and reload of computed maps — dabi / bitbucketweb
- construction and postprocessing scripts for conditioned diffusion are — dabi / bitbucketweb
- fixed random conditionals plotting problem — dabi / bitbucketweb
- storage (using dill) and post processing of conditioned diffusion — dabi / bitbucketweb
- test numbers 1-4 in extra densities — rebeccae.morrison / bitbucketweb
- working on plotting of conditioned diffusion — dabi / bitbucketweb
- fixed bug in plotAlignedConditionals — dabi / bitbucketweb
- plotting — dabi / bitbucketweb
- forcing full span when rbf is chosen in default constructors — dabi / bitbucketweb
- condiff: fixed input span to — dabi / bitbucketweb
- testing higher order for cond diff — dabi / bitbucketweb
- fixed problem in aligned map plotting — dabi / bitbucketweb
- started with parallelization of diagnostics — dabi / bitbucketweb
- parallelization of the diagnostics — dabi / bitbucketweb
- cond diff: adaptation — dabi / bitbucketweb
- cond diff: adaptation works — dabi / bitbucketweb
- parallelization works for aligned conditionals — dabi / bitbucketweb
- working on cond diff example and figures — dabi / bitbucketweb
- plot with log log — rebeccae.morrison / bitbucketweb
- plotting diagnostic parallelized with mpi_map v1.0.3 — dabi / bitbucketweb
- updated conditioned diffusion postprocessing files — dabi / bitbucketweb
- added variance based diagnostic — dabi / bitbucketweb
- allow for restart in cond diff example — dabi / bitbucketweb
- working on restarting of cond diff — dabi / bitbucketweb
- plotting diagnostic now stack all the evaluation points together in — dabi / bitbucketweb
- added nprocs in adapted composition cond diff — dabi / bitbucketweb
- fixed bug in slice map plotting — dabi / bitbucketweb
- cond diff with restart works — dabi / bitbucketweb
- fixed problem in inverse which would cause loss of precision. cond diff — dabi / bitbucketweb
- started with the parallelization of variance_approx_kl. Changes are — dabi / bitbucketweb
- added Weibull density to the available test distributions — dabi / bitbucketweb
- moved all pc_density analytical stuff to ExtraDensities — rebeccae.morrison / bitbucketweb
- started with issue #41. made a sketch c++ module — dabi / bitbucketweb
- handling arrays Numpy/C done — dabi / bitbucketweb
- started with weird sampler — dabi / bitbucketweb
- sampler done — dabi / bitbucketweb
- working on construction from samples — dabi / bitbucketweb
- working on Laplace for cond diff — dabi / bitbucketweb
- working on plots cond diff — dabi / bitbucketweb
- some plotting progresses — dabi / bitbucketweb
- example for xun ready. Todo: document it.. — dabi / bitbucketweb
- added readme to the CPP-module example — dabi / bitbucketweb
- removed unnecessary files — dabi / bitbucketweb
- prepared figures for YMM presentation — dabi / bitbucketweb
- working on the direct approximation of the Weibull distribution — dabi / bitbucketweb
- log_pdf in extra doesn't work with algorithm, but algorithm is running — rebeccae.morrison / bitbucketweb
- working on map composition direct transport — dabi / bitbucketweb
- Weibull works. Added asymptotic behavior on the Logistic. — dabi / bitbucketweb
- starting with stochastic volatility — dabi / bitbucketweb
- working on step by step construction — dabi / bitbucketweb
- reordering in progress — rebeccae.morrison / bitbucketweb
- renamed files — dabi / bitbucketweb
- moving in the dark for Logistic and Banana examples... — dabi / bitbucketweb
- added installation tips in the documentation — dabi / bitbucketweb
- reorganizing example file organization — dabi / bitbucketweb
- fixed bug due to new version of SciPy rootfinding routine. tolerances — dabi / bitbucketweb
- rewriting the density — dabi / bitbucketweb
- sv density and data generation ready — dabi / bitbucketweb
- sv: Laplace done — dabi / bitbucketweb
- sv: composition of maps done, with postprocess — dabi / bitbucketweb
- sv: direct map done — dabi / bitbucketweb
- direct map in low dimension — dabi / bitbucketweb
- sv: inverse map construction — dabi / bitbucketweb
- algorithm working, with unnormalized data — rebeccae.morrison / bitbucketweb
- normalizing data, in progress — rebeccae.morrison / bitbucketweb
- sv working on the inverse map — dabi / bitbucketweb
- algorithm with renormalized data — rebeccae.morrison / bitbucketweb
- working on sv inverse — dabi / bitbucketweb
- added grad check on minimiziation. working on sv inverse... — dabi / bitbucketweb
- fixed bug on grad_a_inverse pushforward... — dabi / bitbucketweb
- sv inverse map preconditioned throught laplace pullback — dabi / bitbucketweb
- preparing dataset for Shwab — dabi / bitbucketweb
- algorithm tau change — rebeccae.morrison / bitbucketweb
- updated jenkins links — dabi / bitbucketweb
- reversed to v1.0.0 for initial releases — dabi / bitbucketweb
- data loading script for Robert done — dabi / bitbucketweb
- data loading for Robert works — dabi / bitbucketweb
- Added example with only the material for Shwab — dabi / bitbucketweb
- added test pullback for shwab material — dabi / bitbucketweb
- mc study of map parameters — rebeccae.morrison / bitbucketweb
- memory leak issue — rebeccae.morrison / bitbucketweb
- renamed variables — dabi / bitbucketweb
- sv: inverse map preconditioned with diagonal Laplace — dabi / bitbucketweb
- debugging memory leak — dabi / bitbucketweb
- added if conditions around logging outputs — dabi / bitbucketweb
- partially solved memory leak. There is still an issue with precomputed — dabi / bitbucketweb
- improved logging — dabi / bitbucketweb
- New stoc vol with hyperparameters doc — spantini / bitbucketweb
- fixing memory leak — dabi / bitbucketweb
- Done with the derivation of the Stoc Vol model with Hyper-params — spantini / bitbucketweb
- cleaned msf_kl_test file — dabi / bitbucketweb
- mc_sparsity.py — rebeccae.morrison / bitbucketweb
- post processing mc study — rebeccae.morrison / bitbucketweb
- diagnostics are now parallelized — dabi / bitbucketweb
- #45 added default constructors to examples. TODO: fix Gumbel — dabi / bitbucketweb
- Fixes #45 — dabi / bitbucketweb
- finished with default constructors examples — dabi / bitbucketweb
- post proc for mc study has S and Omega matrix and element-wise norms — rebeccae.morrison / bitbucketweb
- Implementing gradients Stoc Vol with Hyper-parameters — spantini / bitbucketweb
- caching passes unit tests. TODO: test on example and check speedup — dabi / bitbucketweb
- added time tracking for examples — dabi / bitbucketweb
- working on examples — dabi / bitbucketweb
- added timing in all the examples — dabi / bitbucketweb
- taking top-down approach. started with kl_divergence functions in — dabi / bitbucketweb
- variable elimination added but has bug, need to find cliques in matrix — rebeccae.morrison / bitbucketweb
- applied changes to all functions in Routines.py. TODO: think about the — dabi / bitbucketweb
- grid graph implemented — rebeccae.morrison / bitbucketweb
- designed a way to make chacing and batching work while parallelizing the — dabi / bitbucketweb
- working on parallel structures — dabi / bitbucketweb
- parallelization of kl_divergence done... maybe. — dabi / bitbucketweb
- working on parallel batching... — dabi / bitbucketweb
- working on parallel-batching... — dabi / bitbucketweb
- MPI implementation to be debugged (old and new unit tests) — dabi / bitbucketweb
- old unit tests work!! — dabi / bitbucketweb
- parallel evaluation of kl divergence work almost on all test cases.. — dabi / bitbucketweb
- parallelization now allows for the use of a pool of processors which are — dabi / bitbucketweb
- added unit tests for minimization. to be tested — dabi / bitbucketweb
- kl tests — dabi / bitbucketweb
- working on unit tests — dabi / bitbucketweb
- fixed test case for arctan parallel — dabi / bitbucketweb
- minimization tests passed — dabi / bitbucketweb
- Done with full joint Stoc Vol with Hypers — spantini / bitbucketweb
- bug fixed. running all tests! — dabi / bitbucketweb
- fixed bugs! MPI works! TODO: update the examples — dabi / bitbucketweb
- Done with Markov Component of Stoc Vol with Hypers — spantini / bitbucketweb
- parallelization works on the examples. TODO: profiling — dabi / bitbucketweb
- fixed bug on unit tests — dabi / bitbucketweb
- speed up unit tests kl divergence — dabi / bitbucketweb
- parallelized precomputation and fixed bug in test_kl_divergence — dabi / bitbucketweb
- another bug in test_kl — dabi / bitbucketweb
- another bug in test_kl — dabi / bitbucketweb
- running tests on stochastic volatility with hyperparameters — dabi / bitbucketweb
- working on parallelization of generation of new samples — dabi / bitbucketweb
- parallelized generation of samples — dabi / bitbucketweb
- post-proc finds error, variance and bias — rebeccae.morrison / bitbucketweb
- fixed mpi_eval call in regression — dabi / bitbucketweb
- fixed bug regression — dabi / bitbucketweb
- removed parallelization in regression for now... opening #52 — dabi / bitbucketweb
- working on composition of maps — dabi / bitbucketweb
- working on stoch vol — dabi / bitbucketweb
- examples work without mpirun — dabi / bitbucketweb
- Fixes #53. — dabi / bitbucketweb
- optional matplotlib in examples — dabi / bitbucketweb
- updated testing script — dabi / bitbucketweb
- made matplotlib optional throughout the module — dabi / bitbucketweb
- added script for running on voyager.mit.edu — dabi / bitbucketweb
- working on stochvol — dabi / bitbucketweb
- working on cluster — dabi / bitbucketweb
- fixed bug in kl divergence unit tests — dabi / bitbucketweb
- working on cluster — dabi / bitbucketweb
- Added trim density on Stoc Vol Hyper — spantini / bitbucketweb
- map generation for density with hyper parameters — dabi / bitbucketweb
- working on postprocessing — dabi / bitbucketweb
- Fixed deepcopy issues with Stoc Vol — spantini / bitbucketweb
- working on cluster — dabi / bitbucketweb
- postprocessing step — dabi / bitbucketweb
- fix typo in Routines.py — rebeccae.morrison / bitbucketweb
- fixed map generation with hyper — dabi / bitbucketweb
- all tests pass — dabi / bitbucketweb
- changes made on hess_x_log_pullback. TODO: replicate on other hess_x — dabi / bitbucketweb
- Issue #31: removed construction of m x d x d x d x d tensor from — dabi / bitbucketweb
- working on #40: implementing the map-reduce scheme — dabi / bitbucketweb
- the map-reduce scheme works. Figure out why the number of processes — dabi / bitbucketweb
- Fixes #53: implements map-reduce scheme — dabi / bitbucketweb
- histograms of map and omega entries — rebeccae.morrison / bitbucketweb
- added the stochastic Laplace postprocessing for the hyperparamters case — dabi / bitbucketweb
- laplace approximation posprocess for hyper parameters — dabi / bitbucketweb
- Implemented Markov component stoc vol hyper — spantini / bitbucketweb
- added defaults for components with different basis and span — dabi / bitbucketweb
- ready to test — spantini / bitbucketweb
- fix bug on defaults — dabi / bitbucketweb
- almost testing — spantini / bitbucketweb
- fixes.. — dabi / bitbucketweb
- something is running — spantini / bitbucketweb
- Scripts composition stoc vol with hyper working — spantini / bitbucketweb
- fixed defaults — dabi / bitbucketweb
- working on unit tests for clusters — dabi / bitbucketweb
- Ready for full problem with 1hyper — spantini / bitbucketweb
- Ready for full problem with 1hyper — spantini / bitbucketweb
- unit tests on cluster work — dabi / bitbucketweb
- Fixes for full problem with 1hyper — spantini / bitbucketweb
- Stoc Vol Hyper--configuration for 2 hyper — spantini / bitbucketweb
- Stoc Vol Hyper--configuration for 2 hyper — spantini / bitbucketweb
- working on first variation examples — dabi / bitbucketweb
- working on example — dabi / bitbucketweb
- working on first variation — dabi / bitbucketweb
- fixed bug on defaults — dabi / bitbucketweb
- other bug.. — dabi / bitbucketweb
- added job number in submission script for clusters — dabi / bitbucketweb
- added voyager submission script — dabi / bitbucketweb
- Setup for 3hypers Stoc Vol — spantini / bitbucketweb
- Setup for 3hypers Stoc Vol — spantini / bitbucketweb
- very unsure on where to put the first variation implementation — dabi / bitbucketweb
- regression example works on python3 — dabi / bitbucketweb
- working on parallelization of regression — dabi / bitbucketweb
- regression is now parallel. TODO: implement map-reduce for regression — dabi / bitbucketweb
- warm start with skipping steps done. It should be tested first! — dabi / bitbucketweb
- Changes to plot and postprocessing — spantini / bitbucketweb
- histograms have no ticks or labels — rebeccae.morrison / bitbucketweb
- added data for 2hyper — dabi / bitbucketweb
- added results for 1hyper — dabi / bitbucketweb
- working on hypersonic. added lag on composition construction. — dabi / bitbucketweb
- Getting rid of the recursion for composition of maps — spantini / bitbucketweb
- Input NMC to post processing script — spantini / bitbucketweb
- first variation implemented. TODO: test it — dabi / bitbucketweb
- added mpi_pool argument to diagnostic functions. Changed design of — dabi / bitbucketweb
- fixed variance diagnostic routine — dabi / bitbucketweb
- fixed routine variance diagnostic — dabi / bitbucketweb
- data 3hyper — dabi / bitbucketweb
- working on refinement — dabi / bitbucketweb
- working on test case 2d — dabi / bitbucketweb
- fixed file TransportMapDensities. The PullBackDensity was defined — dabi / bitbucketweb
- pdf as exp(log_pdf) — dabi / bitbucketweb
- Fixes to post-processing trim script — spantini / bitbucketweb
- working on plots — dabi / bitbucketweb
- working on plots of the first variation — dabi / bitbucketweb
- Decoupled data analysis from plots — spantini / bitbucketweb
- working on plots of first variation 2d — dabi / bitbucketweb
- added diagonal transport map — dabi / bitbucketweb
- adaptivity works on banana — dabi / bitbucketweb
- adaptive refinement works on banana with hyper-cross enrichment — dabi / bitbucketweb
- working on the banana — dabi / bitbucketweb
- done with the banana example — dabi / bitbucketweb
- started with stochastic volatility — dabi / bitbucketweb
- added results 2 hyper — dabi / bitbucketweb
- working on adaptivity for stochastic volatility — dabi / bitbucketweb
- it somehow works on stoc vol 5 steps — dabi / bitbucketweb
- removed data from branch — dabi / bitbucketweb
- new enrichment and stopping strategy in first variation adaptivity. — dabi / bitbucketweb
- preparing sensitivity tests — dabi / bitbucketweb
- refinement routine done. to be tested — dabi / bitbucketweb
- working on full algorithm for adaptivity — dabi / bitbucketweb
- working on remove coefficients — dabi / bitbucketweb
- first variation approach designed — dabi / bitbucketweb
- added input arguments to scripts — dabi / bitbucketweb
- 2hyper map 100 — dabi / bitbucketweb
- refinement strategy includes check on sensitivity of variance diagnostic — dabi / bitbucketweb
- data for stoc vol 2 hypers n100 — spantini / bitbucketweb
- added analysis 2hyper 100steps — dabi / bitbucketweb
- working on figures — dabi / bitbucketweb
- working on plots — dabi / bitbucketweb
- map from samples notebook started — rebeccae.morrison / bitbucketweb
- post processing — rebeccae.morrison / bitbucketweb
- map from samples notebook, code fine but maybe should have more text — rebeccae.morrison / bitbucketweb
- moved samples notebook — rebeccae.morrison / bitbucketweb
- new storage for first variation script — dabi / bitbucketweb
- fixed storage adaptivity — dabi / bitbucketweb
- fixing adaptivity for quadratures — dabi / bitbucketweb
- working on examples for presentation — dabi / bitbucketweb
- added output on refinement — dabi / bitbucketweb
- improved total order multi index routine. — dabi / bitbucketweb
- added output to adaptivity — dabi / bitbucketweb
- getting data.. — dabi / bitbucketweb
- running conditionals for alessio — dabi / bitbucketweb
- improved postprocess — dabi / bitbucketweb
- fixed adaptivity routine — dabi / bitbucketweb
- right now the mpi design is a big mess... find an elegant way to get all — dabi / bitbucketweb
- restructuring all mpi calls according to the new design — dabi / bitbucketweb
- working on parallelization of objective functions — dabi / bitbucketweb
- objective done for integrated exponential... — dabi / bitbucketweb
- modifying regression routines. Todo also: fix the constraints in the — dabi / bitbucketweb
- done with code rewriting. TODO: rewrite all tests and examples. — dabi / bitbucketweb
- debuging: testing serial execution kl_divergence — dabi / bitbucketweb
- testing minimization serial — dabi / bitbucketweb
- minimization IE works. TODO: LS minimization and all parallel — dabi / bitbucketweb
- all serial tests work — dabi / bitbucketweb
- working on parallel tests — dabi / bitbucketweb
- testing parallel on kl_minimization and L2_minimization — dabi / bitbucketweb
- testing parallel on kl_minimization and L2_minimization — dabi / bitbucketweb
- passing all tests — dabi / bitbucketweb
- started with the documentation of MPI — dabi / bitbucketweb
- going on with docs — dabi / bitbucketweb
- fixed pdf/log_pdf for transprot map densities and going on with mpi — dabi / bitbucketweb
- working on example — dabi / bitbucketweb
- working on documentation — dabi / bitbucketweb
- working on documentation — dabi / bitbucketweb
- working on mpi examples — dabi / bitbucketweb
- working on mpi examples.... — dabi / bitbucketweb
- going on with mpi documentation. TODO: check examples... — dabi / bitbucketweb
- updated examples — dabi / bitbucketweb
- examples have been updated to use the new mpi interface — dabi / bitbucketweb
- updated slurm script for examples — dabi / bitbucketweb
- residual modifications to adaptivity routines — dabi / bitbucketweb
- fixed bug in mpi_eval — dabi / bitbucketweb
- working on examples — dabi / bitbucketweb
- updated regression examples to use MPI — dabi / bitbucketweb
- added action of hessian on routines and TransportMapBase. TODO: modify — dabi / bitbucketweb
- action of the Hessian implemented for the kl-divergence and the l2 — dabi / bitbucketweb
- finished last merge — dabi / bitbucketweb
- working on 3hyper — dabi / bitbucketweb
- fixed regression — dabi / bitbucketweb
- fixed chacing of hessian. Now it is really not recomputed — dabi / bitbucketweb
- fixed output hess — dabi / bitbucketweb
- fixed typo in routines — dabi / bitbucketweb
- batching implemented to be exthensively tested — dabi / bitbucketweb
- working on unittests for l2_misfit — dabi / bitbucketweb
- first test passed — dabi / bitbucketweb
- adding tests — dabi / bitbucketweb
- passing some of the tests... — dabi / bitbucketweb
- misfit tests all pass — dabi / bitbucketweb
- regression batching seems to work on unit test cases — dabi / bitbucketweb
- almost ready to run 3hyper on cluster — dabi / bitbucketweb
- almost ready to run 3hyper on cluster — dabi / bitbucketweb
- fixed runner — dabi / bitbucketweb
- removed data. use Dropbox folder for this — dabi / bitbucketweb
- logging capabilities improved for both kl-divergence and regression — dabi / bitbucketweb
- fixed scripts — dabi / bitbucketweb
- fixes #63 — dabi / bitbucketweb
- fixed serialization of the logger (un-pickable and thus removed from the — dabi / bitbucketweb
- added curvature output on Hessian output (to check positive — dabi / bitbucketweb
- mpi tutorial is done — dabi / bitbucketweb
- working on cpp examples — dabi / bitbucketweb
- updated stocvol analysis with new MPI — dabi / bitbucketweb
- updated construction scripts — dabi / bitbucketweb
- updated analysis — dabi / bitbucketweb
- udated plotting for stoc vol — dabi / bitbucketweb
- updated mpi-usage — dabi / bitbucketweb
- re-activated var_diag_list — dabi / bitbucketweb
- added debug code for Hessian conditioning — dabi / bitbucketweb
- added no-marginals option in plotting — dabi / bitbucketweb
- use gaussian graphs in algorithm — rebeccae.morrison / bitbucketweb
- working with generated data — dabi / bitbucketweb
- working on newly generated data — dabi / bitbucketweb
- fixed analysis script — dabi / bitbucketweb
- removed data folder durbin — dabi / bitbucketweb
- updating adaptivity to new MPI — dabi / bitbucketweb
- fixed merge with master. MPI functionalities updated — dabi / bitbucketweb
- added possibility of pulling back through Laplace prior to adapt the map — dabi / bitbucketweb
- improved postprocessing — dabi / bitbucketweb
- added possibiltiy do inverse adaptivity — dabi / bitbucketweb
- working on log-gauss Cox — dabi / bitbucketweb
- added test for processes — dabi / bitbucketweb
- working on log-cox densities — dabi / bitbucketweb
- working on logcox — dabi / bitbucketweb
- working on log-cox — dabi / bitbucketweb
- working on setup of log gaussian cox — dabi / bitbucketweb
- data generation done — dabi / bitbucketweb
- working on log gaussian cox — dabi / bitbucketweb
- plotting change in laplace postprocess — dabi / bitbucketweb
- added pieces of grad_a_omega — rebeccae.morrison / bitbucketweb
- testing new derivatives — rebeccae.morrison / bitbucketweb
- cleaning before merge — rebeccae.morrison / bitbucketweb
- fixes on the full transport maps — dabi / bitbucketweb
- reorganizing examples — dabi / bitbucketweb
- added Laplace scripts — dabi / bitbucketweb
- restructuring examples — dabi / bitbucketweb
- restructuring examples — dabi / bitbucketweb
- restructuring stochastic volatility example — dabi / bitbucketweb
- restructuring stochastic volatility — dabi / bitbucketweb
- restructuring LogGaussCox — dabi / bitbucketweb
- restructuring — dabi / bitbucketweb
- working on LogGaussianCox postprocessing for generic maps — dabi / bitbucketweb
- working on LogGaussianCox — dabi / bitbucketweb
- started working on script for generic transport map construction — dabi / bitbucketweb
- updated contributors list and author list in files — dabi / bitbucketweb
- updated readme — dabi / bitbucketweb
- updated readme — dabi / bitbucketweb
- working on direct map script — dabi / bitbucketweb
- started with xml specification of maps — dabi / bitbucketweb
- delta method almost done, fibers incorrect in TransportMapBase — rebeccae.morrison / bitbucketweb
- working on xml descriptors — dabi / bitbucketweb
- working on xml descriptor parsers — dabi / bitbucketweb
- updated authors and emails — dabi / bitbucketweb
- added xml loader for tests — dabi / bitbucketweb
- reduced dimension of linear map Hessian return — dabi / bitbucketweb
- updated authors and emails... — dabi / bitbucketweb
- working on constructor of linear span approximations — dabi / bitbucketweb
- working on the XML schema... — dabi / bitbucketweb
- working on the schema and validating it... — dabi / bitbucketweb
- working on the definition of a syntax for the components — dabi / bitbucketweb
- working on the definition of a syntax for the components — dabi / bitbucketweb
- working on basis — dabi / bitbucketweb
- added example structures — dabi / bitbucketweb
- working on the parser in TriangularTransportMaps.py — dabi / bitbucketweb
- working on the parser for IntegratedExpTriMap — dabi / bitbucketweb
- updated author and contact in init file — dabi / bitbucketweb
- parser.... — dabi / bitbucketweb
- sprinting on LogGaussianCoxProcess. The script tmap-direct will need to — dabi / bitbucketweb
- test was run successfully for nobs=30. the tmap-direct script is in — dabi / bitbucketweb
- working on independent samplers — dabi / bitbucketweb
- working on rejection sampler — dabi / bitbucketweb
- working on samplers — dabi / bitbucketweb
- working on effective sample size criteria... — dabi / bitbucketweb
- ess implemented — dabi / bitbucketweb
- working on postprocess scripts — dabi / bitbucketweb
- bigger head map for log gaussian cox — dabi / bitbucketweb
- working on the sampling of tmap — dabi / bitbucketweb
- almost done with figures for Log Gauss Cox — dabi / bitbucketweb
- working on Metropolis samples. Added h5py dependency — dabi / bitbucketweb
- tests gradahessxpartialxd — rebeccae.morrison / bitbucketweb
- one bug less to be fixed... — dabi / bitbucketweb
- added test_functions — dabi / bitbucketweb
- figures and scripts for log gauss cox are done — dabi / bitbucketweb
- added batching for tmap-postprocess but needs to be improved — dabi / bitbucketweb
- streamlining scripts for sequential inference postprocessing — dabi / bitbucketweb
- heavy modification of the postprocess scripts for stoch vol. Sequential — dabi / bitbucketweb
- scripts for paper working... — dabi / bitbucketweb
- working on postprocessing plotting — dabi / bitbucketweb
- merging — dabi / bitbucketweb
- prepared plotting for paper — dabi / bitbucketweb
- almost all figures are done — dabi / bitbucketweb
- Christmas plots — dabi / bitbucketweb
- working on figures — dabi / bitbucketweb
- working on parsing of IntExpNonLinearHeadMap-5d.xml — dabi / bitbucketweb
- working on parsing of IntExpNonLinearHeadMap-5d.xml — dabi / bitbucketweb
- working on functional approximations. Allow for the use of — dabi / bitbucketweb
- added the approx layer in order to mimic the class hierarchy — dabi / bitbucketweb
- think a better design for tensorized/non-tensorized basis... — dabi / bitbucketweb
- working on parsing of functionals — dabi / bitbucketweb
- working on tensorization of basis.... — dabi / bitbucketweb
- moving on to the parsing of basis — dabi / bitbucketweb
- constructor works for IntExpNonLinearHeadMap-5d.xml and — dabi / bitbucketweb
- removed HardVars which is cretated at sdist time — dabi / bitbucketweb
- added creation of hardcoded variables (xml schemes) at install and — dabi / bitbucketweb
- working on serializing xml unit tests. — dabi / bitbucketweb
- figure out how to define classes on the fly — dabi / bitbucketweb
- full order works — dabi / bitbucketweb
- monotonic lin span approximation get instantiated, but we need to add a — dabi / bitbucketweb
- tolerance computed with delta method — rebeccae.morrison / bitbucketweb
- working on RadialBasisFunctions support... Maybe we need to interface — dabi / bitbucketweb
- loading from xml works, but multi-index loading and xml storing — dabi / bitbucketweb
- construction of multi-idx map from xml works — dabi / bitbucketweb
- working on tests for scripts — dabi / bitbucketweb
- done with the tests for the scripts — dabi / bitbucketweb
- started working on integrated squared approximation — dabi / bitbucketweb
- working on test_transportmaps inverse.. — dabi / bitbucketweb
- working on kl divergence tests — dabi / bitbucketweb
- working on tests and examples — dabi / bitbucketweb
- test_xml works — dabi / bitbucketweb
- removed Full and Total order approximations. Now they are all — dabi / bitbucketweb
- starting the implementation of the integrated squared linear span — dabi / bitbucketweb
- working on the intsq approximation — dabi / bitbucketweb
- going on... — dabi / bitbucketweb
- progressing... — dabi / bitbucketweb
- we are over the hill.. — dabi / bitbucketweb
- Class IntegratedSquaredParametricFunctionApproximation done. TODO: — dabi / bitbucketweb
- test_transportmaps pass — dabi / bitbucketweb
- working on minimization tests... something wrong with batching.. — dabi / bitbucketweb
- working on int sq — dabi / bitbucketweb
- interfacing with PosDefConstSquaredExtHermitePhysicistsFunction — dabi / bitbucketweb
- something is wrong with the pos def squared implementation... — dabi / bitbucketweb
- working on test_transports for new Inetgrated Squared approximations — dabi / bitbucketweb
- squared const ext hermite prob func works but slow. To be profiled — dabi / bitbucketweb
- integrated squared is almost ready. Implementation sufficient for merge — dabi / bitbucketweb
- ordering and post-processing — rebeccae.morrison / bitbucketweb
- added functions needed for variance of omega, for algebraic basis — rebeccae.morrison / bitbucketweb
- added n_edges to graphs and normalized delta plots — rebeccae.morrison / bitbucketweb
- fixed postprocess script — dabi / bitbucketweb
- fixed input/raw_input — dabi / bitbucketweb
- working on additional functions for list composite map — dabi / bitbucketweb
- working on hess_x — dabi / bitbucketweb
- implemented ListCompositeTransportMap. It's missing some — dabi / bitbucketweb
- imporved documentation tmap-direct — dabi / bitbucketweb
- cleaning: mapsFromSamples dir — rebeccae.morrison / bitbucketweb
- working on scripts interface — dabi / bitbucketweb
- working on help for scripts — dabi / bitbucketweb
- working on scripts — dabi / bitbucketweb
- working on scripts — dabi / bitbucketweb
- algorithm with graphs is now test file — rebeccae.morrison / bitbucketweb
- working on postprocessing scripts — dabi / bitbucketweb
- fixed disclaimer LGPL — dabi / bitbucketweb
- tests work for the scripts in place. start docs. — dabi / bitbucketweb
- restructured documentation. Prepared for scripts documentation — dabi / bitbucketweb
- working on documentation of cli — dabi / bitbucketweb
- working on bod — dabi / bitbucketweb
- fixed references and working on bod — dabi / bitbucketweb
- working on unbiased samplers — dabi / bitbucketweb
- working on unbiased sampling — dabi / bitbucketweb
- data generation for bod — dabi / bitbucketweb
- done with bod — dabi / bitbucketweb
- done with bod — dabi / bitbucketweb
- working on xml docs — dabi / bitbucketweb
- xml docs done — dabi / bitbucketweb
- xml done — dabi / bitbucketweb
- xml done — dabi / bitbucketweb
- gumbel ready for presentation too — dabi / bitbucketweb
- fixed gumbel also for documentation — dabi / bitbucketweb
- added grad_x_inverse and log_deg_grad_x_inverse methods — dabi / bitbucketweb
- working on bod presentation — dabi / bitbucketweb
- going on with bod presentation — dabi / bitbucketweb
- almost done with bod — dabi / bitbucketweb
- bod for presentation ready — dabi / bitbucketweb
- done with tm examples — dabi / bitbucketweb
- done with xml — dabi / bitbucketweb
- started with cli — dabi / bitbucketweb
- started working on the stochastic volatility density... — dabi / bitbucketweb
- started with writing of classes for decomposable densities — dabi / bitbucketweb
- started with writing of classes for decomposable densities — dabi / bitbucketweb
- going on with densities — dabi / bitbucketweb
- working on classes for sequential inference — dabi / bitbucketweb
- working on rewriting stocvol densities — dabi / bitbucketweb
- wrapping up stocvol density — dabi / bitbucketweb
- testing new implementation! — dabi / bitbucketweb
- equivalent density! TODO: MarkovComponent — dabi / bitbucketweb
- working on markov component. — dabi / bitbucketweb
- working on markov comp — dabi / bitbucketweb
- one residual error in the hessian... — dabi / bitbucketweb
- The density is set up and ready to be used — dabi / bitbucketweb
- working on documentation and refactored examples of densities — dabi / bitbucketweb
- documenting stoc volatility — dabi / bitbucketweb
- going on with sequential inference example — dabi / bitbucketweb
- working on docs for stocvol example — dabi / bitbucketweb
- reorg, now with dirs — rebeccae.morrison / bitbucketweb
- fix directory for monte carlo run — rebeccae.morrison / bitbucketweb
- adding data dir — rebeccae.morrison / bitbucketweb
- removed tabulate — dabi / bitbucketweb
- fixed import for python2 — dabi / bitbucketweb
- added missing densities — dabi / bitbucketweb
- removed some example densities for now — dabi / bitbucketweb
- acme data clean — rebeccae.morrison / bitbucketweb
- working on stoc vol example — dabi / bitbucketweb
- working on first step stoc vol — dabi / bitbucketweb
- working on first step stoc vol — dabi / bitbucketweb
- almost done with stoch vol — dabi / bitbucketweb
- doing stoc vol post processing — dabi / bitbucketweb
- sequential inference needs a longer example — dabi / bitbucketweb
- started with SeqHMM integrator — dabi / bitbucketweb
- finished sequential inference... — dabi / bitbucketweb
- fixed imports of integrator. TODO: documentation of the integrator class — dabi / bitbucketweb
- fixed typos in examples — dabi / bitbucketweb
- added svg data assimilation — dabi / bitbucketweb
- added inkscape preamble — dabi / bitbucketweb
- updated figures and notation in sequential inference — dabi / bitbucketweb
- fixed pictures — dabi / bitbucketweb
- fixed bod — dabi / bitbucketweb
- working on filtering — dabi / bitbucketweb
- done with getting filtering out — dabi / bitbucketweb
- ok with filtering of stoc vol — dabi / bitbucketweb
- added the script for sequential inference — dabi / bitbucketweb
- first implementation of sampler works on postprocessing — dabi / bitbucketweb
- added stochastic volatility folder — dabi / bitbucketweb
- adding ess estimation in unbiased sampling script — dabi / bitbucketweb
- postprocess sampling fixed — dabi / bitbucketweb
- working on command line commands — dabi / bitbucketweb
- working on command line documentation! — dabi / bitbucketweb
- working on command line documentation! — dabi / bitbucketweb
- working on cli — dabi / bitbucketweb
- going on with cli — dabi / bitbucketweb
- working on cli postprocess — dabi / bitbucketweb
- working on cli postprocess — dabi / bitbucketweb
- cli done — dabi / bitbucketweb
- dummy file for volatility data — rebeccae.morrison / bitbucketweb
- added missing file — dabi / bitbucketweb
- fixing stile of documentation — dabi / bitbucketweb
- refactored Density->Distribution — dabi / bitbucketweb
- removed unused functions in Diagnostics.Plotting — dabi / bitbucketweb
- checked default constructors. fixes #34 — dabi / bitbucketweb
- added deprecation flag for old sub-module Denisities — dabi / bitbucketweb
- fixed logging of solving stats — dabi / bitbucketweb
- removed default dependency on optional packages — dabi / bitbucketweb
- disabled parallel tests if MPI is not supported — dabi / bitbucketweb
- downgraded documentation to TM 1.0 — dabi / bitbucketweb
- removed circular import in all the submodules — dabi / bitbucketweb
- local merge — dabi / bitbucketweb
- installation goes through on MAC. Going on with documentation — dabi / bitbucketweb
- working on intro — dabi / bitbucketweb
- checking for broken links — dabi / bitbucketweb
- fixing readme — dabi / bitbucketweb
- fixed wrong merge.. — dabi / bitbucketweb
- working on alinged-marginals. Check on quadratures output as well. — dabi / bitbucketweb
- added marginal plotting — dabi / bitbucketweb
- sequential-tm with restart — dabi / bitbucketweb
- tmap-sequential-tm can now re-start. Added verbose options and — dabi / bitbucketweb
- working on postprocess for sequential algorithm — dabi / bitbucketweb
- added postprocess for sequential inference — dabi / bitbucketweb
- done with scripts — dabi / bitbucketweb
- working on documentation of inverse from samples — dabi / bitbucketweb
- working on inverse sparse transport — dabi / bitbucketweb
- added inverse stochastic volatility example — dabi / bitbucketweb
- added figures for cli.ipynb — dabi / bitbucketweb
- working on class diagram — dabi / bitbucketweb
- working on the api — dabi / bitbucketweb
- removed autosummary — dabi / bitbucketweb
- included inheritance graph. Fixes #27 — dabi / bitbucketweb
- fixed dictionary get for python2. Fixes #75 — dabi / bitbucketweb
- updated version 1.0.0b1 and copyright — dabi / bitbucketweb
- updated info — dabi / bitbucketweb
- working on upload script — dabi / bitbucketweb
- working on release testpypi — dabi / bitbucketweb
- modified warning for non-supported features — dabi / bitbucketweb
- fixed linking to SpectralToolbox. Now it is done at first import — dabi / bitbucketweb
- fixed issue in frozen distributions. v1.0.0b4 — dabi / bitbucketweb
- fixed xml linking — dabi / bitbucketweb
- fixed test_xml and test_scripts — dabi / bitbucketweb
- fixed some settings for unit tests failing on kl-divergence due to fd — dabi / bitbucketweb
- refactoring Examples for release — dabi / bitbucketweb
- cleaning up before release — rebeccae.morrison / bitbucketweb
- working on mirroring — dabi / bitbucketweb
- after moving — rebeccae.morrison / bitbucketweb
- working on public mirroring — dabi / bitbucketweb
- working on public mirroring — dabi / bitbucketweb
- added deprecated frozen denisties — dabi / bitbucketweb
- working on mirror — dabi / bitbucketweb
- workin on mirroring — dabi / bitbucketweb
- fixed (maybe) base_density/base_distribution inconsistency — dabi / bitbucketweb
- fixed (again maybe) base_density/base_distribution inconsistency — dabi / bitbucketweb
- mirroring script ready — dabi / bitbucketweb
- fixed readme — dabi / bitbucketweb
- bitbucket-pipelines.yml created online with Bitbucket — dabi / bitbucketweb
- bitbucket-pipelines.yml edited online with Bitbucket — dabi / bitbucketweb
- bitbucket-pipelines.yml edited online with Bitbucket — dabi / bitbucketweb
- bitbucket-pipelines.yml edited online with Bitbucket — dabi / bitbucketweb
- bitbucket-pipelines.yml edited online with Bitbucket — dabi / bitbucketweb
- bitbucket-pipelines.yml edited online with Bitbucket — dabi / bitbucketweb
- bitbucket-pipelines.yml edited online with Bitbucket — dabi / bitbucketweb
- bitbucket-pipelines.yml edited online with Bitbucket — dabi / bitbucketweb
- bitbucket-pipelines.yml edited online with Bitbucket — dabi / bitbucketweb
- bitbucket-pipelines.yml deleted online with Bitbucket — dabi / bitbucketweb
- working on jenkins script — dabi / bitbucketweb
- testing push with jenkins — dabi / bitbucketweb
- updated jenkins script — dabi / bitbucketweb
- fixing pip for long path.. not really needed for tests on bitbucket — dabi / bitbucketweb
- jenkins... — dabi / bitbucketweb
- jenkins... — dabi / bitbucketweb
- jenkins... — dabi / bitbucketweb
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- jenkins... — dabi / bitbucketweb
- jenkins... — dabi / bitbucketweb
- jenkins... — dabi / bitbucketweb
- Jenkins config: testing test_scripts — dabi / bitbucketweb
- fixed logging of solving stats — dabi / bitbucketweb
- Jenkins tests — dabi / bitbucketweb
- Jenkins... — dabi / bitbucketweb
- Jenkins... — dabi / bitbucketweb
- Jenkins... — dabi / bitbucketweb
- Jenkins... — dabi / bitbucketweb
- Jenkins... — dabi / bitbucketweb
- Jenkins... — dabi / bitbucketweb
- Jenkins... — dabi / bitbucketweb
- Jenkins... — dabi / bitbucketweb
- Jenkins... — dabi / bitbucketweb
- Jenkins: exit(1) if packages failed — dabi / bitbucketweb
- removed cached dir — dabi / bitbucketweb
- Jenkins... working on setup — dabi / bitbucketweb
- jenkins.. — dabi / bitbucketweb
- jenkins.. — dabi / bitbucketweb
- jenkins... — dabi / bitbucketweb
- jenkins... — dabi / bitbucketweb
- jenkins testing all — dabi / bitbucketweb
- updated email — dabi / bitbucketweb
- removed e-mail contact — dabi / bitbucketweb
- updated readme — dabi / bitbucketweb
- updated readme — dabi / bitbucketweb
- updated readme — dabi / bitbucketweb
- reduce verbosity in tests — dabi / bitbucketweb
- updated scripts and logging — dabi / bitbucketweb
- fixed logging — dabi / bitbucketweb
- removed MPI support for macys-Sierra — dabi / bitbucketweb
- fixed log levels.. — dabi / bitbucketweb
- fixed errors in grad_a_hess_x and grad_a_hess_x_log_det_grad_x — dabi / bitbucketweb
- removed tests for grad_a_hess_x_log_det_grad_x. Filed issue #76 — dabi / bitbucketweb
- updated parallelization and fixed failing test in test_kl_divergence — dabi / bitbucketweb
- fixing test_kl_divergence (maybe) — dabi / bitbucketweb
- turning MPI=True on Macys-Sierra — dabi / bitbucketweb
- fixed linear map in IS kl_divergence — dabi / bitbucketweb
- added jenkins tests for testpypi — dabi / bitbucketweb
- modified linear2d test in order to make it more amenable for PushForward — dabi / bitbucketweb
- simplified setup.py (standardized) — dabi / bitbucketweb
- the user is now required to pre-install numpy — dabi / bitbucketweb
- fixed jenkins script — dabi / bitbucketweb
- removed hardvars — dabi / bitbucketweb
- removed hardvars — dabi / bitbucketweb
- removed pushforward kl_div tests — dabi / bitbucketweb
- split serial and parallel tests — dabi / bitbucketweb
- testing serial — dabi / bitbucketweb
- added mpi option — dabi / bitbucketweb
- fixed check on mpi in jenkins — dabi / bitbucketweb
- added lag on mpi tests in order to accommodate for closing and opening — dabi / bitbucketweb
- set unique random seed=1 — dabi / bitbucketweb
- adding badges to the documentation — dabi / bitbucketweb
- disabled MPI on sierra — dabi / bitbucketweb
- relaxed check on l2 minimization tolerance — dabi / bitbucketweb
- updated badges and upload code — dabi / bitbucketweb
- lower tolerance on transportmap_distributions — dabi / bitbucketweb
- fixed namespace and restored tolerance in transportmap_distributions — dabi / bitbucketweb
- updating index — dabi / bitbucketweb
- added verbose output for failed finite difference — dabi / bitbucketweb
- added verbose output for failed finite difference — dabi / bitbucketweb
- set integrated squared to linear for test_transportmap_distributions — dabi / bitbucketweb
- extending readme — dabi / bitbucketweb
- README.rst edited online with Bitbucket — dabi / bitbucketweb
- README.rst edited online with Bitbucket — dabi / bitbucketweb