Started by upstream project "TransportMaps-private-master" build number 95
originally caused by:
 Started by BitBucket push by dabi86
 Started by BitBucket push by dabi86
Building remotely on macys in workspace /Users/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/macys/PYTHON_EXE/python2/VENV_SYS/virtualenv
[WS-CLEANUP] Deleting project workspace...
Cloning the remote Git repository
Cloning repository git@bitbucket.org:dabi86/transportmaps-private.git
 > git init /Users/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/macys/PYTHON_EXE/python2/VENV_SYS/virtualenv # timeout=10
Fetching upstream changes from git@bitbucket.org:dabi86/transportmaps-private.git
 > git --version # timeout=10
 > git fetch --tags --progress git@bitbucket.org:dabi86/transportmaps-private.git +refs/heads/*:refs/remotes/origin/*
 > git config remote.origin.url git@bitbucket.org:dabi86/transportmaps-private.git # timeout=10
 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git config remote.origin.url git@bitbucket.org:dabi86/transportmaps-private.git # timeout=10
Fetching upstream changes from git@bitbucket.org:dabi86/transportmaps-private.git
 > git fetch --tags --progress git@bitbucket.org:dabi86/transportmaps-private.git +refs/heads/*:refs/remotes/origin/*
Checking out Revision 124402980e1baecb9a68a52f33dd80c55b94f2c3 (refs/remotes/origin/master)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 124402980e1baecb9a68a52f33dd80c55b94f2c3
Commit message: "Merge branch 'hotfixes/master'"
 > git rev-list 1ec0fa367ed0096a04269b321589b28d0cdf2903 # timeout=10
[virtualenv] $ /bin/bash -xe /var/folders/wp/20zl4b2n0qxcrp90f31275f80000gp/T/jenkins7785191881695562207.sh
+ bash -ex jenkins/test-source.sh
+ set -e
++ pwd
+ ROOT=/Users/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/macys/PYTHON_EXE/python2/VENV_SYS/virtualenv
++ echo TransportMaps-private-master/COMPILER=clang,MACHINE=macys,PYTHON_EXE=python2,VENV_SYS=virtualenv
++ cut -d / -f 1
+ TEST_NAME=TransportMaps-private-master
+ ENV_NAME=venv_TransportMaps-private-master_python2
+ VENV_OPTS=
+ [[ TransportMaps-private-master == *\m\p\i* ]]
+ TTYPE=serial
+ MPI=False
++ hostname
+ [[ macys.mit.edu == *\m\a\c\y\s* ]]
+ export PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin
+ PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin
+ [[ python2 == \p\y\t\h\o\n\2 ]]
+ PYTHON_EXE=python
++ hostname
+ [[ macys.mit.edu == \m\a\c\y\s\-\S\i\e\r\r\a ]]
++ hostname
+ [[ macys.mit.edu == *\r\e\y\n\o\l\d\s* ]]
+ '[' virtualenv = virtualenv ']'
+ rm -rf venv_TransportMaps-private-master_python2
+ virtualenv --python=python venv_TransportMaps-private-master_python2
Already using interpreter /usr/bin/python
New python executable in /Users/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/macys/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/bin/python
Installing setuptools, pip, wheel...done.
+ source venv_TransportMaps-private-master_python2/bin/activate
++ deactivate nondestructive
++ unset -f pydoc
++ '[' -z '' ']'
++ '[' -z '' ']'
++ '[' -n /bin/bash ']'
++ hash -r
++ '[' -z '' ']'
++ unset VIRTUAL_ENV
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/Users/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/macys/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin
++ PATH=/Users/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/macys/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin
++ export PATH
++ '[' -z '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ '[' x '!=' x ']'
+++ basename /Users/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/macys/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2
++ PS1='(venv_TransportMaps-private-master_python2) '
++ export PS1
++ alias pydoc
++ '[' -n /bin/bash ']'
++ hash -r
++ python -V
Python 2.7.5
+ PY_VERS=
+ CMD='import logging;'
+ CMD+='import TransportMaps as TM;'
+ CMD+='import warnings;'
+ CMD+='warnings.simplefilter('\''ignore'\'');'
+ CMD+='TM.tests.run_all(log_level=logging.ERROR,ttype='\''serial'\'')'
+ echo ''

+ echo 'TEST_NAME: TransportMaps-private-master'
TEST_NAME: TransportMaps-private-master
++ hostname
+ echo 'HOSTNAME: macys.mit.edu'
HOSTNAME: macys.mit.edu
+ echo 'PATH: /Users/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/macys/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin'
PATH: /Users/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/macys/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin
+ echo 'VENV_OPTS: '
VENV_OPTS: 
+ echo 'PY-VERS: '
PY-VERS: 
+ echo 'PY-CMD: import logging;import TransportMaps as TM;import warnings;warnings.simplefilter('\''ignore'\'');TM.tests.run_all(log_level=logging.ERROR,ttype='\''serial'\'')'
PY-CMD: import logging;import TransportMaps as TM;import warnings;warnings.simplefilter('ignore');TM.tests.run_all(log_level=logging.ERROR,ttype='serial')
+ echo ''

+ echo 'Upgrading pip'
Upgrading pip
+ python /Users/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/macys/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/bin/pip install --upgrade pip
Requirement already up-to-date: pip in ./venv_TransportMaps-private-master_python2/lib/python2.7/site-packages
+ echo 'Installing numpy'
Installing numpy
+ python /Users/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/macys/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/bin/pip install --upgrade numpy
Collecting numpy
/Users/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/macys/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/lib/python2.7/site-packages/pip/_vendor/requests/packages/urllib3/util/ssl_.py:318: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/security.html#snimissingwarning.
  SNIMissingWarning
/Users/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/macys/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/lib/python2.7/site-packages/pip/_vendor/requests/packages/urllib3/util/ssl_.py:122: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/security.html#insecureplatformwarning.
  InsecurePlatformWarning
  Using cached numpy-1.13.3-cp27-cp27m-macosx_10_6_intel.macosx_10_9_intel.macosx_10_9_x86_64.macosx_10_10_intel.macosx_10_10_x86_64.whl
Installing collected packages: numpy
Successfully installed numpy-1.13.3
+ echo Packaging
Packaging
+ rm -fr tmp_sdist
+ mkdir tmp_sdist
+ python setup.py clean --all
running clean
'build/lib' does not exist -- can't clean it
'build/bdist.macosx-10.9-intel' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
+ python setup.py sdist --dist-dir=tmp_sdist
running sdist
running egg_info
creating TransportMaps.egg-info
writing requirements to TransportMaps.egg-info/requires.txt
writing TransportMaps.egg-info/PKG-INFO
writing top-level names to TransportMaps.egg-info/top_level.txt
writing dependency_links to TransportMaps.egg-info/dependency_links.txt
writing manifest file 'TransportMaps.egg-info/SOURCES.txt'
reading manifest file 'TransportMaps.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
no previously-included directories found matching 'Examples/stable/?/data'
warning: no previously-included files found matching '.git'
warning: no previously-included files found matching '*.dill'
warning: no previously-included files found matching '*.hdf5'
warning: no previously-included files found matching '*.pkl'
warning: no previously-included files found matching '*.pkl.old'
warning: no previously-included files found matching '*~'
writing manifest file 'TransportMaps.egg-info/SOURCES.txt'
running check
creating TransportMaps-1.0b2
creating TransportMaps-1.0b2/Docs
creating TransportMaps-1.0b2/Docs/conf3
creating TransportMaps-1.0b2/Docs/make3
creating TransportMaps-1.0b2/Docs/source
creating TransportMaps-1.0b2/Docs/source/Figures
creating TransportMaps-1.0b2/Docs/source/Figures/BOD
creating TransportMaps-1.0b2/Docs/source/Figures/working
creating TransportMaps-1.0b2/Docs/source/Figures/working/inv-sparsity
creating TransportMaps-1.0b2/Docs/source/aux
creating TransportMaps-1.0b2/Docs/source/aux/inv-stocvol
creating TransportMaps-1.0b2/Docs/source/aux/xml
creating TransportMaps-1.0b2/Docs/source/cli
creating TransportMaps-1.0b2/Examples
creating TransportMaps-1.0b2/Examples/stable
creating TransportMaps-1.0b2/Examples/stable/BODmodel
creating TransportMaps-1.0b2/Examples/stable/CPP-Module
creating TransportMaps-1.0b2/Examples/stable/CPP-Module/xun
creating TransportMaps-1.0b2/Examples/stable/CPP-Module/xun/tests
creating TransportMaps-1.0b2/Examples/stable/StochasticVolatility
creating TransportMaps-1.0b2/Examples/stable/TestDistributions
creating TransportMaps-1.0b2/Examples/stable/cluster
creating TransportMaps-1.0b2/Examples/stable/cluster/voyager
creating TransportMaps-1.0b2/TransportMaps
creating TransportMaps-1.0b2/TransportMaps.egg-info
creating TransportMaps-1.0b2/TransportMaps/Algorithms
creating TransportMaps-1.0b2/TransportMaps/Algorithms/Adaptivity
creating TransportMaps-1.0b2/TransportMaps/Algorithms/SequentialInference
creating TransportMaps-1.0b2/TransportMaps/CLI
creating TransportMaps-1.0b2/TransportMaps/Densities
creating TransportMaps-1.0b2/TransportMaps/Densities/Decomposable
creating TransportMaps-1.0b2/TransportMaps/Densities/Inference
creating TransportMaps-1.0b2/TransportMaps/Diagnostics
creating TransportMaps-1.0b2/TransportMaps/Distributions
creating TransportMaps-1.0b2/TransportMaps/Distributions/Decomposable
creating TransportMaps-1.0b2/TransportMaps/Distributions/Examples
creating TransportMaps-1.0b2/TransportMaps/Distributions/Examples/BiochemicalOxigenDemand
creating TransportMaps-1.0b2/TransportMaps/Distributions/Examples/InertialNavigationSystem
creating TransportMaps-1.0b2/TransportMaps/Distributions/Examples/LogGaussianCoxProcess
creating TransportMaps-1.0b2/TransportMaps/Distributions/Examples/RailwayVehicleDynamics
creating TransportMaps-1.0b2/TransportMaps/Distributions/Examples/RailwayVehicleDynamics/Coradia175
creating TransportMaps-1.0b2/TransportMaps/Distributions/Examples/ScalarLinearGaussMarkovProcess
creating TransportMaps-1.0b2/TransportMaps/Distributions/Examples/StochasticVolatility
creating TransportMaps-1.0b2/TransportMaps/Distributions/Inference
creating TransportMaps-1.0b2/TransportMaps/Functionals
creating TransportMaps-1.0b2/TransportMaps/Likelihoods
creating TransportMaps-1.0b2/TransportMaps/Maps
creating TransportMaps-1.0b2/TransportMaps/Maps/Decomposable
creating TransportMaps-1.0b2/TransportMaps/Optimization
creating TransportMaps-1.0b2/TransportMaps/Samplers
creating TransportMaps-1.0b2/TransportMaps/XML
creating TransportMaps-1.0b2/TransportMaps/XML/schema
creating TransportMaps-1.0b2/TransportMaps/tests
creating TransportMaps-1.0b2/TransportMaps/tests/xml
creating TransportMaps-1.0b2/TransportMaps/tests/xml/maps
creating TransportMaps-1.0b2/scripts
copying files to TransportMaps-1.0b2...
copying COPYING -> TransportMaps-1.0b2
copying COPYING.LESSER -> TransportMaps-1.0b2
copying MANIFEST.in -> TransportMaps-1.0b2
copying README.rst -> TransportMaps-1.0b2
copying requirements-H5PY.txt -> TransportMaps-1.0b2
copying requirements-MPI.txt -> TransportMaps-1.0b2
copying requirements-PLOT.txt -> TransportMaps-1.0b2
copying requirements-SPHINX.txt -> TransportMaps-1.0b2
copying requirements.txt -> TransportMaps-1.0b2
copying setup.cfg -> TransportMaps-1.0b2
copying setup.py -> TransportMaps-1.0b2
copying Docs/conf3/conf.py -> TransportMaps-1.0b2/Docs/conf3
copying Docs/make3/Makefile -> TransportMaps-1.0b2/Docs/make3
copying Docs/make3/build-api -> TransportMaps-1.0b2/Docs/make3
copying Docs/make3/checklinks.sh -> TransportMaps-1.0b2/Docs/make3
copying Docs/make3/run-autosummary.sh.deprec -> TransportMaps-1.0b2/Docs/make3
copying Docs/source/aa-references.rst -> TransportMaps-1.0b2/Docs/source
copying Docs/source/credits.rst -> TransportMaps-1.0b2/Docs/source
copying Docs/source/example-BOD-4d.ipynb -> TransportMaps-1.0b2/Docs/source
copying Docs/source/example-banana-2d.ipynb -> TransportMaps-1.0b2/Docs/source
copying Docs/source/example-beta-1d.ipynb -> TransportMaps-1.0b2/Docs/source
copying Docs/source/example-gumbel-1d.ipynb -> TransportMaps-1.0b2/Docs/source
copying Docs/source/example-inverse-gumbel-1d.ipynb -> TransportMaps-1.0b2/Docs/source
copying Docs/source/example-inverse-stochastic-volatility-6d.ipynb -> TransportMaps-1.0b2/Docs/source
copying Docs/source/example-sequential-stocvol-6d.ipynb -> TransportMaps-1.0b2/Docs/source
copying Docs/source/examples-direct-transport.rst -> TransportMaps-1.0b2/Docs/source
copying Docs/source/examples-inverse-transport-from-density.rst -> TransportMaps-1.0b2/Docs/source
copying Docs/source/examples-transport-from-samples.rst -> TransportMaps-1.0b2/Docs/source
copying Docs/source/examples.rst -> TransportMaps-1.0b2/Docs/source
copying Docs/source/index.rst -> TransportMaps-1.0b2/Docs/source
copying Docs/source/install.rst -> TransportMaps-1.0b2/Docs/source
copying Docs/source/linking.rst -> TransportMaps-1.0b2/Docs/source
copying Docs/source/map-from-samples.ipynb -> TransportMaps-1.0b2/Docs/source
copying Docs/source/mpi-usage.ipynb -> TransportMaps-1.0b2/Docs/source
copying Docs/source/pm-bayesian-inference.ipynb -> TransportMaps-1.0b2/Docs/source
copying Docs/source/pm-data-assimilation.ipynb -> TransportMaps-1.0b2/Docs/source
copying Docs/source/pm-distributions.ipynb -> TransportMaps-1.0b2/Docs/source
copying Docs/source/statistical-models.rst -> TransportMaps-1.0b2/Docs/source
copying Docs/source/summary.rst -> TransportMaps-1.0b2/Docs/source
copying Docs/source/tutorial.rst -> TransportMaps-1.0b2/Docs/source
copying Docs/source/xml-descriptors.ipynb -> TransportMaps-1.0b2/Docs/source
copying Docs/source/Figures/DensityTransform.svg -> TransportMaps-1.0b2/Docs/source/Figures
copying Docs/source/Figures/MPI-star-structure.png -> TransportMaps-1.0b2/Docs/source/Figures
copying Docs/source/Figures/SG-Transform.svg -> TransportMaps-1.0b2/Docs/source/Figures
copying Docs/source/Figures/ScatterTransform.svg -> TransportMaps-1.0b2/Docs/source/Figures
copying Docs/source/Figures/SequentialHiddenMarkovModel.png -> TransportMaps-1.0b2/Docs/source/Figures
copying Docs/source/Figures/dataAssimilation.png -> TransportMaps-1.0b2/Docs/source/Figures
copying Docs/source/Figures/dataAssimilationHyper-s1-after.png -> TransportMaps-1.0b2/Docs/source/Figures
copying Docs/source/Figures/dataAssimilationHyper-s1-before.png -> TransportMaps-1.0b2/Docs/source/Figures
copying Docs/source/Figures/dataAssimilationHyper-s2-after.png -> TransportMaps-1.0b2/Docs/source/Figures
copying Docs/source/Figures/dataAssimilationHyper-s2-before.png -> TransportMaps-1.0b2/Docs/source/Figures
copying Docs/source/Figures/dataAssimilationHyper-s3-after.png -> TransportMaps-1.0b2/Docs/source/Figures
copying Docs/source/Figures/dataAssimilationHyper-s3-before.png -> TransportMaps-1.0b2/Docs/source/Figures
copying Docs/source/Figures/flowchart.pdf -> TransportMaps-1.0b2/Docs/source/Figures
copying Docs/source/Figures/flowchart.png -> TransportMaps-1.0b2/Docs/source/Figures
copying Docs/source/Figures/inv-sparsity.svg -> TransportMaps-1.0b2/Docs/source/Figures
copying Docs/source/Figures/mpi_eval-distributed-memory.png -> TransportMaps-1.0b2/Docs/source/Figures
copying Docs/source/Figures/mpi_eval-simple.png -> TransportMaps-1.0b2/Docs/source/Figures
copying Docs/source/Figures/BOD/BOD_test_bottles.jpg -> TransportMaps-1.0b2/Docs/source/Figures/BOD
copying Docs/source/Figures/BOD/Influent_raw_wastewater.jpg -> TransportMaps-1.0b2/Docs/source/Figures/BOD
copying Docs/source/Figures/BOD/Marlborough_East_Wastewater_Treatment_Plant_Aerial.JPG -> TransportMaps-1.0b2/Docs/source/Figures/BOD
copying Docs/source/Figures/BOD/PatchWork.png -> TransportMaps-1.0b2/Docs/source/Figures/BOD
copying Docs/source/Figures/BOD/PatchWork.xcf -> TransportMaps-1.0b2/Docs/source/Figures/BOD
copying Docs/source/Figures/BOD/samples.jpg -> TransportMaps-1.0b2/Docs/source/Figures/BOD
copying Docs/source/Figures/working/MPI-star-structure.svg -> TransportMaps-1.0b2/Docs/source/Figures/working
copying Docs/source/Figures/working/dataAssimilation.svg -> TransportMaps-1.0b2/Docs/source/Figures/working
copying Docs/source/Figures/working/dataAssimilationHyper-s1-after.svg -> TransportMaps-1.0b2/Docs/source/Figures/working
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copying Docs/source/Figures/working/dataAssimilationHyper.svg -> TransportMaps-1.0b2/Docs/source/Figures/working
copying Docs/source/Figures/working/flowchart.svg -> TransportMaps-1.0b2/Docs/source/Figures/working
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copying Docs/source/Figures/working/inv-sparsity/optionsDecompositionGraphs.tex -> TransportMaps-1.0b2/Docs/source/Figures/working/inv-sparsity
copying Docs/source/Figures/working/inv-sparsity/stylesTikzGraphs.tex -> TransportMaps-1.0b2/Docs/source/Figures/working/inv-sparsity
copying Docs/source/Figures/working/inv-sparsity/tikz_sparsityVolHyper.tex -> TransportMaps-1.0b2/Docs/source/Figures/working/inv-sparsity
copying Docs/source/aux/inv-stocvol/Distribution.dill -> TransportMaps-1.0b2/Docs/source/aux/inv-stocvol
copying Docs/source/aux/inv-stocvol/DistributionGeneration.py -> TransportMaps-1.0b2/Docs/source/aux/inv-stocvol
copying Docs/source/aux/inv-stocvol/Sequential-IntSq-Postprocess.dill -> TransportMaps-1.0b2/Docs/source/aux/inv-stocvol
copying Docs/source/aux/inv-stocvol/Sequential-IntSq-Postprocess.dill.hdf5 -> TransportMaps-1.0b2/Docs/source/aux/inv-stocvol
copying Docs/source/aux/inv-stocvol/Sequential-IntSq.dill -> TransportMaps-1.0b2/Docs/source/aux/inv-stocvol
copying Docs/source/aux/xml/BODmap.xml -> TransportMaps-1.0b2/Docs/source/aux/xml
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copying Docs/source/cli/Sequential-IntSq-filtering-conditionals-3.svg -> TransportMaps-1.0b2/Docs/source/cli
copying Docs/source/cli/Sequential-IntSq-filtering-marginals-0.svg -> TransportMaps-1.0b2/Docs/source/cli
copying Docs/source/cli/Sequential-IntSq-filtering-marginals-1.svg -> TransportMaps-1.0b2/Docs/source/cli
copying Docs/source/cli/Sequential-IntSq-filtering-marginals-2.svg -> TransportMaps-1.0b2/Docs/source/cli
copying Docs/source/cli/Sequential-IntSq-filtering-marginals-3.svg -> TransportMaps-1.0b2/Docs/source/cli
copying Docs/source/cli/Sequential-IntSq-metropolis-ess.svg -> TransportMaps-1.0b2/Docs/source/cli
copying Docs/source/cli/Sequential-IntSq-random-conditionals-approx-base.svg -> TransportMaps-1.0b2/Docs/source/cli
copying Docs/source/cli/cli.ipynb -> TransportMaps-1.0b2/Docs/source/cli
copying Examples/stable/BODmodel/DataGeneration.py -> TransportMaps-1.0b2/Examples/stable/BODmodel
copying Examples/stable/CPP-Module/KLdivergence-InverseMap-InverseConstruction.py -> TransportMaps-1.0b2/Examples/stable/CPP-Module
copying Examples/stable/CPP-Module/xun/setup.py -> TransportMaps-1.0b2/Examples/stable/CPP-Module/xun
copying Examples/stable/CPP-Module/xun/tests/test.py -> TransportMaps-1.0b2/Examples/stable/CPP-Module/xun/tests
copying Examples/stable/StochasticVolatility/DataGeneration.py -> TransportMaps-1.0b2/Examples/stable/StochasticVolatility
copying Examples/stable/StochasticVolatility/PlotExchanges.py -> TransportMaps-1.0b2/Examples/stable/StochasticVolatility
copying Examples/stable/StochasticVolatility/mcmc.py -> TransportMaps-1.0b2/Examples/stable/StochasticVolatility
copying Examples/stable/StochasticVolatility/postprocess-plotting.py -> TransportMaps-1.0b2/Examples/stable/StochasticVolatility
copying Examples/stable/TestDistributions/KLdivergence-InverseMap-DirectConstruction-ByStep.py -> TransportMaps-1.0b2/Examples/stable/TestDistributions
copying Examples/stable/TestDistributions/KLdivergence-InverseMap-DirectConstruction.py -> TransportMaps-1.0b2/Examples/stable/TestDistributions
copying Examples/stable/TestDistributions/KLdivergence-InverseMap-InverseConstruction.py -> TransportMaps-1.0b2/Examples/stable/TestDistributions
copying Examples/stable/TestDistributions/KLdivergence.py -> TransportMaps-1.0b2/Examples/stable/TestDistributions
copying Examples/stable/TestDistributions/Regression.py -> TransportMaps-1.0b2/Examples/stable/TestDistributions
copying Examples/stable/cluster/voyager/run_unit_tests.py -> TransportMaps-1.0b2/Examples/stable/cluster/voyager
copying TransportMaps/Defaults.py -> TransportMaps-1.0b2/TransportMaps
copying TransportMaps/External.py -> TransportMaps-1.0b2/TransportMaps
copying TransportMaps/FiniteDifference.py -> TransportMaps-1.0b2/TransportMaps
copying TransportMaps/Misc.py -> TransportMaps-1.0b2/TransportMaps
copying TransportMaps/ObjectBase.py -> TransportMaps-1.0b2/TransportMaps
copying TransportMaps/Routines.py -> TransportMaps-1.0b2/TransportMaps
copying TransportMaps/__init__.py -> TransportMaps-1.0b2/TransportMaps
copying TransportMaps/_version.py -> TransportMaps-1.0b2/TransportMaps
copying TransportMaps.egg-info/PKG-INFO -> TransportMaps-1.0b2/TransportMaps.egg-info
copying TransportMaps.egg-info/SOURCES.txt -> TransportMaps-1.0b2/TransportMaps.egg-info
copying TransportMaps.egg-info/dependency_links.txt -> TransportMaps-1.0b2/TransportMaps.egg-info
copying TransportMaps.egg-info/not-zip-safe -> TransportMaps-1.0b2/TransportMaps.egg-info
copying TransportMaps.egg-info/requires.txt -> TransportMaps-1.0b2/TransportMaps.egg-info
copying TransportMaps.egg-info/top_level.txt -> TransportMaps-1.0b2/TransportMaps.egg-info
copying TransportMaps/Algorithms/__init__.py -> TransportMaps-1.0b2/TransportMaps/Algorithms
copying TransportMaps/Algorithms/Adaptivity/AdaptivityBase.py -> TransportMaps-1.0b2/TransportMaps/Algorithms/Adaptivity
copying TransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py -> TransportMaps-1.0b2/TransportMaps/Algorithms/Adaptivity
copying TransportMaps/Algorithms/Adaptivity/RegressionAdaptivity.py -> TransportMaps-1.0b2/TransportMaps/Algorithms/Adaptivity
copying TransportMaps/Algorithms/Adaptivity/__init__.py -> TransportMaps-1.0b2/TransportMaps/Algorithms/Adaptivity
copying TransportMaps/Algorithms/SequentialInference/LinearSequentialInference.py -> TransportMaps-1.0b2/TransportMaps/Algorithms/SequentialInference
copying TransportMaps/Algorithms/SequentialInference/NonLinearSequentialInference.py -> TransportMaps-1.0b2/TransportMaps/Algorithms/SequentialInference
copying TransportMaps/Algorithms/SequentialInference/SequentialInferenceBase.py -> TransportMaps-1.0b2/TransportMaps/Algorithms/SequentialInference
copying TransportMaps/Algorithms/SequentialInference/__init__.py -> TransportMaps-1.0b2/TransportMaps/Algorithms/SequentialInference
copying TransportMaps/CLI/AvailableOptions.py -> TransportMaps-1.0b2/TransportMaps/CLI
copying TransportMaps/CLI/PostprocessBase.py -> TransportMaps-1.0b2/TransportMaps/CLI
copying TransportMaps/CLI/ScriptBase.py -> TransportMaps-1.0b2/TransportMaps/CLI
copying TransportMaps/CLI/SequentialPostprocessBase.py -> TransportMaps-1.0b2/TransportMaps/CLI
copying TransportMaps/CLI/__init__.py -> TransportMaps-1.0b2/TransportMaps/CLI
copying TransportMaps/Densities/Densities.py -> TransportMaps-1.0b2/TransportMaps/Densities
copying TransportMaps/Densities/__init__.py -> TransportMaps-1.0b2/TransportMaps/Densities
copying TransportMaps/Densities/Decomposable/SequentialInferenceDensities.py -> TransportMaps-1.0b2/TransportMaps/Densities/Decomposable
copying TransportMaps/Densities/Decomposable/__init__.py -> TransportMaps-1.0b2/TransportMaps/Densities/Decomposable
copying TransportMaps/Densities/Inference/InferenceBase.py -> TransportMaps-1.0b2/TransportMaps/Densities/Inference
copying TransportMaps/Densities/Inference/__init__.py -> TransportMaps-1.0b2/TransportMaps/Densities/Inference
copying TransportMaps/Diagnostics/Plotting.py -> TransportMaps-1.0b2/TransportMaps/Diagnostics
copying TransportMaps/Diagnostics/Routines.py -> TransportMaps-1.0b2/TransportMaps/Diagnostics
copying TransportMaps/Diagnostics/__init__.py -> TransportMaps-1.0b2/TransportMaps/Diagnostics
copying TransportMaps/Distributions/ConditionalDistributions.py -> TransportMaps-1.0b2/TransportMaps/Distributions
copying TransportMaps/Distributions/DistributionBase.py -> TransportMaps-1.0b2/TransportMaps/Distributions
copying TransportMaps/Distributions/FrozenDistributions.py -> TransportMaps-1.0b2/TransportMaps/Distributions
copying TransportMaps/Distributions/ParametricDistributionBase.py -> TransportMaps-1.0b2/TransportMaps/Distributions
copying TransportMaps/Distributions/TransportMapDistributions.py -> TransportMaps-1.0b2/TransportMaps/Distributions
copying TransportMaps/Distributions/__init__.py -> TransportMaps-1.0b2/TransportMaps/Distributions
copying TransportMaps/Distributions/Decomposable/LinearGaussianSequentialInferenceDistributions.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Decomposable
copying TransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Decomposable
copying TransportMaps/Distributions/Decomposable/__init__.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Decomposable
copying TransportMaps/Distributions/Examples/SimpleDistributions.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Examples
copying TransportMaps/Distributions/Examples/__init__.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Examples
copying TransportMaps/Distributions/Examples/BiochemicalOxigenDemand/BODDistributions.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Examples/BiochemicalOxigenDemand
copying TransportMaps/Distributions/Examples/BiochemicalOxigenDemand/__init__.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Examples/BiochemicalOxigenDemand
copying TransportMaps/Distributions/Examples/InertialNavigationSystem/INSDistributions.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Examples/InertialNavigationSystem
copying TransportMaps/Distributions/Examples/InertialNavigationSystem/__init__.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Examples/InertialNavigationSystem
copying TransportMaps/Distributions/Examples/LogGaussianCoxProcess/__init__.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Examples/LogGaussianCoxProcess
copying TransportMaps/Distributions/Examples/RailwayVehicleDynamics/__init__.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Examples/RailwayVehicleDynamics
copying TransportMaps/Distributions/Examples/RailwayVehicleDynamics/Coradia175/Coradia175VehicleParametersEstimation.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Examples/RailwayVehicleDynamics/Coradia175
copying TransportMaps/Distributions/Examples/RailwayVehicleDynamics/Coradia175/Coradia175VehicleStateSpace.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Examples/RailwayVehicleDynamics/Coradia175
copying TransportMaps/Distributions/Examples/RailwayVehicleDynamics/Coradia175/__init__.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Examples/RailwayVehicleDynamics/Coradia175
copying TransportMaps/Distributions/Examples/ScalarLinearGaussMarkovProcess/Distributions.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Examples/ScalarLinearGaussMarkovProcess
copying TransportMaps/Distributions/Examples/ScalarLinearGaussMarkovProcess/__init__.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Examples/ScalarLinearGaussMarkovProcess
copying TransportMaps/Distributions/Examples/StochasticVolatility/StocVolHyperDistributions.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Examples/StochasticVolatility
copying TransportMaps/Distributions/Examples/StochasticVolatility/__init__.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Examples/StochasticVolatility
copying TransportMaps/Distributions/Inference/InferenceBase.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Inference
copying TransportMaps/Distributions/Inference/__init__.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Inference
copying TransportMaps/Functionals/AlgebraicLinearSpanApproximations.py -> TransportMaps-1.0b2/TransportMaps/Functionals
copying TransportMaps/Functionals/FrozenMonotonicFunctions.py -> TransportMaps-1.0b2/TransportMaps/Functionals
copying TransportMaps/Functionals/FunctionBase.py -> TransportMaps-1.0b2/TransportMaps/Functionals
copying TransportMaps/Functionals/LinearSpanApproximationBase.py -> TransportMaps-1.0b2/TransportMaps/Functionals
copying TransportMaps/Functionals/MonotonicFunctionApproximations.py -> TransportMaps-1.0b2/TransportMaps/Functionals
copying TransportMaps/Functionals/ParametricFunctionApproximationBase.py -> TransportMaps-1.0b2/TransportMaps/Functionals
copying TransportMaps/Functionals/ProductDistributionParametricPullbackComponentFunctionBase.py -> TransportMaps-1.0b2/TransportMaps/Functionals
copying TransportMaps/Functionals/__init__.py -> TransportMaps-1.0b2/TransportMaps/Functionals
copying TransportMaps/Likelihoods/LikelihoodBase.py -> TransportMaps-1.0b2/TransportMaps/Likelihoods
copying TransportMaps/Likelihoods/__init__.py -> TransportMaps-1.0b2/TransportMaps/Likelihoods
copying TransportMaps/Maps/FrozenTriangularTransportMaps.py -> TransportMaps-1.0b2/TransportMaps/Maps
copying TransportMaps/Maps/FullTransportMaps.py -> TransportMaps-1.0b2/TransportMaps/Maps
copying TransportMaps/Maps/MapBase.py -> TransportMaps-1.0b2/TransportMaps/Maps
copying TransportMaps/Maps/SimpleTransportMaps.py -> TransportMaps-1.0b2/TransportMaps/Maps
copying TransportMaps/Maps/TransportMapBase.py -> TransportMaps-1.0b2/TransportMaps/Maps
copying TransportMaps/Maps/TriangularTransportMapBase.py -> TransportMaps-1.0b2/TransportMaps/Maps
copying TransportMaps/Maps/TriangularTransportMaps.py -> TransportMaps-1.0b2/TransportMaps/Maps
copying TransportMaps/Maps/__init__.py -> TransportMaps-1.0b2/TransportMaps/Maps
copying TransportMaps/Maps/Decomposable/SequentialInferenceMaps.py -> TransportMaps-1.0b2/TransportMaps/Maps/Decomposable
copying TransportMaps/Maps/Decomposable/__init__.py -> TransportMaps-1.0b2/TransportMaps/Maps/Decomposable
copying TransportMaps/Optimization/Optimizers.py -> TransportMaps-1.0b2/TransportMaps/Optimization
copying TransportMaps/Optimization/__init__.py -> TransportMaps-1.0b2/TransportMaps/Optimization
copying TransportMaps/Samplers/IndependentSamplers.py -> TransportMaps-1.0b2/TransportMaps/Samplers
copying TransportMaps/Samplers/MarkovChainSamplers.py -> TransportMaps-1.0b2/TransportMaps/Samplers
copying TransportMaps/Samplers/Routines.py -> TransportMaps-1.0b2/TransportMaps/Samplers
copying TransportMaps/Samplers/SamplerBase.py -> TransportMaps-1.0b2/TransportMaps/Samplers
copying TransportMaps/Samplers/__init__.py -> TransportMaps-1.0b2/TransportMaps/Samplers
copying TransportMaps/XML/Parser.py -> TransportMaps-1.0b2/TransportMaps/XML
copying TransportMaps/XML/__init__.py -> TransportMaps-1.0b2/TransportMaps/XML
copying TransportMaps/XML/schema/map.xsd -> TransportMaps-1.0b2/TransportMaps/XML/schema
copying TransportMaps/tests/TestFunctions.py -> TransportMaps-1.0b2/TransportMaps/tests
copying TransportMaps/tests/__init__.py -> TransportMaps-1.0b2/TransportMaps/tests
copying TransportMaps/tests/test_L2_minimization.py -> TransportMaps-1.0b2/TransportMaps/tests
copying TransportMaps/tests/test_L2_misfit.py -> TransportMaps-1.0b2/TransportMaps/tests
copying TransportMaps/tests/test_all.py -> TransportMaps-1.0b2/TransportMaps/tests
copying TransportMaps/tests/test_distributions.py -> TransportMaps-1.0b2/TransportMaps/tests
copying TransportMaps/tests/test_functions.py -> TransportMaps-1.0b2/TransportMaps/tests
copying TransportMaps/tests/test_kl_divergence.py -> TransportMaps-1.0b2/TransportMaps/tests
copying TransportMaps/tests/test_kl_minimization.py -> TransportMaps-1.0b2/TransportMaps/tests
copying TransportMaps/tests/test_laplace.py -> TransportMaps-1.0b2/TransportMaps/tests
copying TransportMaps/tests/test_scripts.py -> TransportMaps-1.0b2/TransportMaps/tests
copying TransportMaps/tests/test_sequential_inference.py -> TransportMaps-1.0b2/TransportMaps/tests
copying TransportMaps/tests/test_transportmap_distributions.py -> TransportMaps-1.0b2/TransportMaps/tests
copying TransportMaps/tests/test_transportmap_distributions_sampling.py -> TransportMaps-1.0b2/TransportMaps/tests
copying TransportMaps/tests/test_transportmaps.py -> TransportMaps-1.0b2/TransportMaps/tests
copying TransportMaps/tests/test_xml.py -> TransportMaps-1.0b2/TransportMaps/tests
copying TransportMaps/tests/xml/maps/FullOrdIntExpLinearMap_5d.xml -> TransportMaps-1.0b2/TransportMaps/tests/xml/maps
copying TransportMaps/tests/xml/maps/FullOrdIntExpNonLinearHeadMap_5d.xml -> TransportMaps-1.0b2/TransportMaps/tests/xml/maps
copying TransportMaps/tests/xml/maps/FullOrdIntExpNonLinearMap_5d.xml -> TransportMaps-1.0b2/TransportMaps/tests/xml/maps
copying TransportMaps/tests/xml/maps/FullOrdIntExpTriDiagonalMap_5d.xml -> TransportMaps-1.0b2/TransportMaps/tests/xml/maps
copying TransportMaps/tests/xml/maps/FullOrdMonotLinearSpanLinearMap_5d.xml -> TransportMaps-1.0b2/TransportMaps/tests/xml/maps
copying TransportMaps/tests/xml/maps/MultiIdxMonotLinearSpanLinearMap_5d.xml -> TransportMaps-1.0b2/TransportMaps/tests/xml/maps
copying TransportMaps/tests/xml/maps/TotalOrdIntExpDiagonalMap_5d.xml -> TransportMaps-1.0b2/TransportMaps/tests/xml/maps
copying TransportMaps/tests/xml/maps/TotalOrdIntExpLinearMap_5d.xml -> TransportMaps-1.0b2/TransportMaps/tests/xml/maps
copying TransportMaps/tests/xml/maps/TotalOrdIntExpNonLinearHeadMap_5d.xml -> TransportMaps-1.0b2/TransportMaps/tests/xml/maps
copying TransportMaps/tests/xml/maps/TotalOrdIntExpNonLinearMap_5d.xml -> TransportMaps-1.0b2/TransportMaps/tests/xml/maps
copying TransportMaps/tests/xml/maps/TotalOrdIntExpNonLinearRBFMap_5d.xml -> TransportMaps-1.0b2/TransportMaps/tests/xml/maps
copying TransportMaps/tests/xml/maps/TotalOrdIntExpTriDiagonalMap_5d.xml -> TransportMaps-1.0b2/TransportMaps/tests/xml/maps
copying TransportMaps/tests/xml/maps/TotalOrdIntSqLinearMap_5d.xml -> TransportMaps-1.0b2/TransportMaps/tests/xml/maps
copying TransportMaps/tests/xml/maps/TotalOrdIntSqNonLinearHeadMap_5d.xml -> TransportMaps-1.0b2/TransportMaps/tests/xml/maps
copying TransportMaps/tests/xml/maps/TotalOrdMonotLinearSpanLinearMap_5d.xml -> TransportMaps-1.0b2/TransportMaps/tests/xml/maps
copying scripts/tmap-laplace -> TransportMaps-1.0b2/scripts
copying scripts/tmap-max-likelihood -> TransportMaps-1.0b2/scripts
copying scripts/tmap-postprocess -> TransportMaps-1.0b2/scripts
copying scripts/tmap-sequential-postprocess -> TransportMaps-1.0b2/scripts
copying scripts/tmap-sequential-tm -> TransportMaps-1.0b2/scripts
copying scripts/tmap-tm -> TransportMaps-1.0b2/scripts
Writing TransportMaps-1.0b2/setup.cfg
Creating tar archive
removing 'TransportMaps-1.0b2' (and everything under it)
+ cd tmp_sdist
+ echo Installing
Installing
++ ls
+ INSTALLER=TransportMaps-1.0b2.tar.gz
+ PIP_FLAGS=--no-cache-dir
+ CC=clang
+ MPI=False
+ H5PY=True
+ python /Users/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/macys/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/bin/pip install --upgrade TransportMaps-1.0b2.tar.gz
Processing ./TransportMaps-1.0b2.tar.gz
Requirement already up-to-date: numpy in /Users/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/macys/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/lib/python2.7/site-packages (from TransportMaps==1.0b2)
Collecting orthpol_light>=1.0.1 (from TransportMaps==1.0b2)
/Users/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/macys/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/lib/python2.7/site-packages/pip/_vendor/requests/packages/urllib3/util/ssl_.py:318: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/security.html#snimissingwarning.
  SNIMissingWarning
/Users/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/macys/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/lib/python2.7/site-packages/pip/_vendor/requests/packages/urllib3/util/ssl_.py:122: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/security.html#insecureplatformwarning.
  InsecurePlatformWarning
Collecting scipy (from TransportMaps==1.0b2)
  Using cached scipy-1.0.0-cp27-cp27m-macosx_10_6_intel.macosx_10_9_intel.macosx_10_9_x86_64.macosx_10_10_intel.macosx_10_10_x86_64.whl
Collecting SpectralToolbox>=1.0.4 (from TransportMaps==1.0b2)
  Using cached SpectralToolbox-1.0.7.tar.gz
Collecting dill (from TransportMaps==1.0b2)
Collecting statsmodels (from TransportMaps==1.0b2)
  Using cached statsmodels-0.8.0-cp27-cp27m-macosx_10_6_intel.macosx_10_9_intel.macosx_10_9_x86_64.macosx_10_10_intel.macosx_10_10_x86_64.whl
Collecting pyhmc (from TransportMaps==1.0b2)
  Using cached pyhmc-0.1.2.tar.gz
    Complete output from command python setup.py egg_info:
    Traceback (most recent call last):
      File "<string>", line 1, in <module>
      File "/private/var/folders/wp/20zl4b2n0qxcrp90f31275f80000gp/T/pip-build-RbHsuk/pyhmc/setup.py", line 29, in <module>
        from Cython.Distutils import build_ext
    ImportError: No module named Cython.Distutils
    
    ----------------------------------------
Command "python setup.py egg_info" failed with error code 1 in /private/var/folders/wp/20zl4b2n0qxcrp90f31275f80000gp/T/pip-build-RbHsuk/pyhmc/
Build step 'Execute shell' marked build as failure
[WS-CLEANUP] Deleting project workspace...[WS-CLEANUP] Skipped based on build state FAILURE
Finished: FAILURE