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Started by upstream project "TransportMaps-private-master" build number 111 originally caused by: Started by BitBucket push by Daniele Bigoni Started by BitBucket push by Daniele Bigoni Running as SYSTEM [EnvInject] - Loading node environment variables. Building remotely on reynolds-ubuntu14 in workspace /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... No credentials specified Cloning the remote Git repository Cloning repository git@bitbucket.org:dabi86/transportmaps-private.git > git init /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv # timeout=10 Fetching upstream changes from git@bitbucket.org:dabi86/transportmaps-private.git > git --version # timeout=10 > git fetch --tags --progress git@bitbucket.org:dabi86/transportmaps-private.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url git@bitbucket.org:dabi86/transportmaps-private.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url git@bitbucket.org:dabi86/transportmaps-private.git # timeout=10 Fetching upstream changes from git@bitbucket.org:dabi86/transportmaps-private.git > git fetch --tags --progress git@bitbucket.org:dabi86/transportmaps-private.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision 9574b9da2c23e7d99c522541ec6046368b04b795 (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 9574b9da2c23e7d99c522541ec6046368b04b795 # timeout=10 Commit message: "test-source.sh added PATH for Jenkins" First time build. Skipping changelog. [virtualenv] $ /bin/bash -xe /tmp/jenkins4619568358595425651.sh + bash -ex jenkins/test-source.sh + set -e + PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/jenkins/.local/bin ++ pwd + ROOT=/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv ++ echo TransportMaps-private-master/COMPILER=clang,MACHINE=reynolds-ubuntu14,PYTHON_EXE=python2,VENV_SYS=virtualenv ++ cut -d / -f 1 + TEST_NAME=TransportMaps-private-master + ENV_NAME=venv_TransportMaps-private-master_python2 + VENV_OPTS= + [[ TransportMaps-private-master == *\m\p\i* ]] + TTYPE=serial + MPI=False ++ hostname + [[ reynolds-ubuntu14 == *\m\a\c\y\s* ]] ++ hostname + [[ reynolds-ubuntu14 == \m\a\c\y\s\-\S\i\e\r\r\a ]] ++ hostname + [[ reynolds-ubuntu14 == *\r\e\y\n\o\l\d\s* ]] + export PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/jenkins/.local/bin:/home/jenkins/bin + PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/jenkins/.local/bin:/home/jenkins/bin + '[' virtualenv = virtualenv ']' + rm -rf venv_TransportMaps-private-master_python2 + virtualenv --python=python2 venv_TransportMaps-private-master_python2 New python executable in /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/bin/python2 Also creating executable in /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/bin/python Installing setuptools, pip, wheel... done. Running virtualenv with interpreter /usr/bin/python2 + source venv_TransportMaps-private-master_python2/bin/activate ++ deactivate nondestructive ++ unset -f pydoc ++ '[' -z '' ']' ++ '[' -z '' ']' ++ '[' -n /bin/bash ']' ++ hash -r ++ '[' -z '' ']' ++ unset VIRTUAL_ENV ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2 ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/jenkins/.local/bin:/home/jenkins/bin ++ PATH=/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/jenkins/.local/bin:/home/jenkins/bin ++ export PATH ++ '[' -z '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ '[' x '!=' x ']' +++ basename /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2 ++ PS1='(venv_TransportMaps-private-master_python2) ' ++ export PS1 ++ alias pydoc ++ true ++ '[' -n /bin/bash ']' ++ hash -r ++ python -V Python 2.7.6 + PY_VERS= + CMD='import logging;' + CMD+='import TransportMaps as TM;' + CMD+='import warnings;' + CMD+='warnings.simplefilter('\''ignore'\'');' + CMD+='TM.tests.run_all(log_level=logging.ERROR,ttype='\''serial'\'')' + echo '' + echo 'TEST_NAME: TransportMaps-private-master' TEST_NAME: TransportMaps-private-master ++ hostname + echo 'HOSTNAME: reynolds-ubuntu14' HOSTNAME: reynolds-ubuntu14 + echo 'PATH: /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/jenkins/.local/bin:/home/jenkins/bin' PATH: /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/jenkins/.local/bin:/home/jenkins/bin + echo 'VENV_OPTS: ' VENV_OPTS: + echo 'PY-VERS: ' PY-VERS: + echo 'PY-CMD: import logging;import TransportMaps as TM;import warnings;warnings.simplefilter('\''ignore'\'');TM.tests.run_all(log_level=logging.ERROR,ttype='\''serial'\'')' PY-CMD: import logging;import TransportMaps as TM;import warnings;warnings.simplefilter('ignore');TM.tests.run_all(log_level=logging.ERROR,ttype='serial') + echo '' + echo 'Upgrading pip' Upgrading pip + python /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/bin/pip install --upgrade pip DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/local/lib/python2.7/site-packages/pip/_vendor/urllib3/util/ssl_.py:354: SNIMissingWarning: An HTTPS request has been made, but the SNI (Server Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings SNIMissingWarning /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/local/lib/python2.7/site-packages/pip/_vendor/urllib3/util/ssl_.py:150: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings InsecurePlatformWarning Requirement already up-to-date: pip in ./venv_TransportMaps-private-master_python2/lib/python2.7/site-packages (19.1.1) + echo 'Installing numpy' Installing numpy + python /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/bin/pip install --upgrade numpy DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. Collecting numpy /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/local/lib/python2.7/site-packages/pip/_vendor/urllib3/util/ssl_.py:354: SNIMissingWarning: An HTTPS request has been made, but the SNI (Server Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings SNIMissingWarning /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/local/lib/python2.7/site-packages/pip/_vendor/urllib3/util/ssl_.py:150: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings InsecurePlatformWarning /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/local/lib/python2.7/site-packages/pip/_vendor/urllib3/util/ssl_.py:150: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings InsecurePlatformWarning Downloading https://files.pythonhosted.org/packages/1f/c7/198496417c9c2f6226616cff7dedf2115a4f4d0276613bab842ec8ac1e23/numpy-1.16.4-cp27-cp27mu-manylinux1_x86_64.whl (17.0MB) Installing collected packages: numpy Successfully installed numpy-1.16.4 + echo Packaging Packaging + rm -fr tmp_sdist + mkdir tmp_sdist + python setup.py clean --all running clean 'build/lib.linux-x86_64-2.7' does not exist -- can't clean it 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it + python setup.py sdist --dist-dir=tmp_sdist running sdist running egg_info creating TransportMaps.egg-info writing requirements to TransportMaps.egg-info/requires.txt writing TransportMaps.egg-info/PKG-INFO writing top-level names to TransportMaps.egg-info/top_level.txt writing dependency_links to TransportMaps.egg-info/dependency_links.txt writing manifest file 'TransportMaps.egg-info/SOURCES.txt' reading manifest file 'TransportMaps.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'Examples/stable/?/data' warning: no previously-included files found matching '.git' warning: no previously-included files found matching '*.dill' warning: no previously-included files found matching '*.hdf5' warning: no previously-included files found matching '*.pkl' warning: no previously-included files found matching '*.pkl.old' warning: no previously-included files found matching '*~' writing manifest file 'TransportMaps.egg-info/SOURCES.txt' running check creating TransportMaps-2.0b3 creating TransportMaps-2.0b3/Examples creating TransportMaps-2.0b3/Examples/stable creating TransportMaps-2.0b3/Examples/stable/BODmodel creating TransportMaps-2.0b3/Examples/stable/CPP-Module creating TransportMaps-2.0b3/Examples/stable/CPP-Module/xun creating TransportMaps-2.0b3/Examples/stable/CPP-Module/xun/tests creating TransportMaps-2.0b3/Examples/stable/StochasticVolatility creating TransportMaps-2.0b3/Examples/stable/TestDistributions creating TransportMaps-2.0b3/Examples/stable/cluster creating TransportMaps-2.0b3/Examples/stable/cluster/voyager creating TransportMaps-2.0b3/TransportMaps creating TransportMaps-2.0b3/TransportMaps.egg-info creating TransportMaps-2.0b3/TransportMaps/Algorithms creating TransportMaps-2.0b3/TransportMaps/Algorithms/Adaptivity creating TransportMaps-2.0b3/TransportMaps/Algorithms/SequentialInference creating TransportMaps-2.0b3/TransportMaps/Algorithms/SparsityIdentification creating TransportMaps-2.0b3/TransportMaps/CLI creating TransportMaps-2.0b3/TransportMaps/Densities creating TransportMaps-2.0b3/TransportMaps/Densities/Decomposable creating TransportMaps-2.0b3/TransportMaps/Densities/Inference creating TransportMaps-2.0b3/TransportMaps/Diagnostics creating TransportMaps-2.0b3/TransportMaps/Distributions creating TransportMaps-2.0b3/TransportMaps/Distributions/Decomposable creating TransportMaps-2.0b3/TransportMaps/Distributions/Examples creating TransportMaps-2.0b3/TransportMaps/Distributions/Examples/BiochemicalOxigenDemand creating TransportMaps-2.0b3/TransportMaps/Distributions/Examples/InertialNavigationSystem creating TransportMaps-2.0b3/TransportMaps/Distributions/Examples/LogGaussianCoxProcess creating TransportMaps-2.0b3/TransportMaps/Distributions/Examples/RailwayVehicleDynamics creating TransportMaps-2.0b3/TransportMaps/Distributions/Examples/RailwayVehicleDynamics/Coradia175 creating TransportMaps-2.0b3/TransportMaps/Distributions/Examples/ScalarLinearGaussMarkovProcess creating TransportMaps-2.0b3/TransportMaps/Distributions/Examples/StochasticVolatility creating TransportMaps-2.0b3/TransportMaps/Distributions/Inference creating TransportMaps-2.0b3/TransportMaps/Functionals creating TransportMaps-2.0b3/TransportMaps/Likelihoods creating TransportMaps-2.0b3/TransportMaps/Maps creating TransportMaps-2.0b3/TransportMaps/Maps/Decomposable creating TransportMaps-2.0b3/TransportMaps/Optimization creating TransportMaps-2.0b3/TransportMaps/RandomizedLinearAlgebra creating TransportMaps-2.0b3/TransportMaps/Samplers creating TransportMaps-2.0b3/TransportMaps/XML creating TransportMaps-2.0b3/TransportMaps/XML/schema creating TransportMaps-2.0b3/TransportMaps/tests creating TransportMaps-2.0b3/TransportMaps/tests/xml creating TransportMaps-2.0b3/TransportMaps/tests/xml/maps creating TransportMaps-2.0b3/scripts copying files to TransportMaps-2.0b3... copying COPYING -> TransportMaps-2.0b3 copying COPYING.LESSER -> TransportMaps-2.0b3 copying MANIFEST.in -> TransportMaps-2.0b3 copying README.rst -> TransportMaps-2.0b3 copying requirements-H5PY.txt -> TransportMaps-2.0b3 copying requirements-MPI.txt -> TransportMaps-2.0b3 copying requirements-PLOT.txt -> TransportMaps-2.0b3 copying requirements-PYHMC.txt -> TransportMaps-2.0b3 copying requirements-SPHINX.txt -> TransportMaps-2.0b3 copying requirements.txt -> TransportMaps-2.0b3 copying setup.cfg -> TransportMaps-2.0b3 copying setup.py -> TransportMaps-2.0b3 copying Examples/stable/BODmodel/DataGeneration.py -> TransportMaps-2.0b3/Examples/stable/BODmodel copying Examples/stable/CPP-Module/KLdivergence-InverseMap-InverseConstruction.py -> TransportMaps-2.0b3/Examples/stable/CPP-Module copying Examples/stable/CPP-Module/xun/setup.py -> TransportMaps-2.0b3/Examples/stable/CPP-Module/xun copying Examples/stable/CPP-Module/xun/tests/test.py -> TransportMaps-2.0b3/Examples/stable/CPP-Module/xun/tests copying Examples/stable/StochasticVolatility/DataGeneration.py -> TransportMaps-2.0b3/Examples/stable/StochasticVolatility copying Examples/stable/StochasticVolatility/PlotExchanges.py -> TransportMaps-2.0b3/Examples/stable/StochasticVolatility copying Examples/stable/StochasticVolatility/mcmc.py -> TransportMaps-2.0b3/Examples/stable/StochasticVolatility copying Examples/stable/StochasticVolatility/postprocess-plotting.py -> TransportMaps-2.0b3/Examples/stable/StochasticVolatility copying Examples/stable/TestDistributions/KLdivergence-InverseMap-DirectConstruction-ByStep.py -> TransportMaps-2.0b3/Examples/stable/TestDistributions copying Examples/stable/TestDistributions/KLdivergence-InverseMap-DirectConstruction.py -> TransportMaps-2.0b3/Examples/stable/TestDistributions copying Examples/stable/TestDistributions/KLdivergence-InverseMap-InverseConstruction.py -> TransportMaps-2.0b3/Examples/stable/TestDistributions copying Examples/stable/TestDistributions/KLdivergence.py -> TransportMaps-2.0b3/Examples/stable/TestDistributions copying Examples/stable/TestDistributions/Regression.py -> TransportMaps-2.0b3/Examples/stable/TestDistributions copying Examples/stable/cluster/voyager/run_unit_tests.py -> TransportMaps-2.0b3/Examples/stable/cluster/voyager copying TransportMaps/Defaults.py -> TransportMaps-2.0b3/TransportMaps copying TransportMaps/External.py -> TransportMaps-2.0b3/TransportMaps copying TransportMaps/FiniteDifference.py -> TransportMaps-2.0b3/TransportMaps copying TransportMaps/Misc.py -> TransportMaps-2.0b3/TransportMaps copying TransportMaps/ObjectBase.py -> TransportMaps-2.0b3/TransportMaps copying TransportMaps/Routines.py -> TransportMaps-2.0b3/TransportMaps copying TransportMaps/__init__.py -> TransportMaps-2.0b3/TransportMaps copying TransportMaps/_version.py -> TransportMaps-2.0b3/TransportMaps copying TransportMaps.egg-info/PKG-INFO -> TransportMaps-2.0b3/TransportMaps.egg-info copying TransportMaps.egg-info/SOURCES.txt -> TransportMaps-2.0b3/TransportMaps.egg-info copying TransportMaps.egg-info/dependency_links.txt -> TransportMaps-2.0b3/TransportMaps.egg-info copying TransportMaps.egg-info/not-zip-safe -> TransportMaps-2.0b3/TransportMaps.egg-info copying TransportMaps.egg-info/requires.txt -> TransportMaps-2.0b3/TransportMaps.egg-info copying TransportMaps.egg-info/top_level.txt -> TransportMaps-2.0b3/TransportMaps.egg-info copying TransportMaps/Algorithms/__init__.py -> TransportMaps-2.0b3/TransportMaps/Algorithms copying TransportMaps/Algorithms/Adaptivity/AdaptivityBase.py -> TransportMaps-2.0b3/TransportMaps/Algorithms/Adaptivity copying TransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py -> TransportMaps-2.0b3/TransportMaps/Algorithms/Adaptivity copying TransportMaps/Algorithms/Adaptivity/RegressionAdaptivity.py -> TransportMaps-2.0b3/TransportMaps/Algorithms/Adaptivity copying TransportMaps/Algorithms/Adaptivity/__init__.py -> TransportMaps-2.0b3/TransportMaps/Algorithms/Adaptivity copying TransportMaps/Algorithms/SequentialInference/LinearSequentialInference.py -> TransportMaps-2.0b3/TransportMaps/Algorithms/SequentialInference copying TransportMaps/Algorithms/SequentialInference/NonLinearSequentialInference.py -> TransportMaps-2.0b3/TransportMaps/Algorithms/SequentialInference copying TransportMaps/Algorithms/SequentialInference/SequentialInferenceBase.py -> TransportMaps-2.0b3/TransportMaps/Algorithms/SequentialInference copying TransportMaps/Algorithms/SequentialInference/__init__.py -> TransportMaps-2.0b3/TransportMaps/Algorithms/SequentialInference copying TransportMaps/Algorithms/SparsityIdentification/GeneralizedPrecision.py -> TransportMaps-2.0b3/TransportMaps/Algorithms/SparsityIdentification copying TransportMaps/Algorithms/SparsityIdentification/NodeOrdering.py -> TransportMaps-2.0b3/TransportMaps/Algorithms/SparsityIdentification copying TransportMaps/Algorithms/SparsityIdentification/RegularizedMap.py -> TransportMaps-2.0b3/TransportMaps/Algorithms/SparsityIdentification copying TransportMaps/Algorithms/SparsityIdentification/SparsityIdentificationNonGaussian.py -> TransportMaps-2.0b3/TransportMaps/Algorithms/SparsityIdentification copying TransportMaps/Algorithms/SparsityIdentification/__init__.py -> TransportMaps-2.0b3/TransportMaps/Algorithms/SparsityIdentification copying TransportMaps/CLI/AdaptivityPostprocessBase.py -> TransportMaps-2.0b3/TransportMaps/CLI copying TransportMaps/CLI/AvailableOptions.py -> TransportMaps-2.0b3/TransportMaps/CLI copying TransportMaps/CLI/PostprocessBase.py -> TransportMaps-2.0b3/TransportMaps/CLI copying TransportMaps/CLI/ScriptBase.py -> TransportMaps-2.0b3/TransportMaps/CLI copying TransportMaps/CLI/SequentialPostprocessBase.py -> TransportMaps-2.0b3/TransportMaps/CLI copying TransportMaps/CLI/__init__.py -> TransportMaps-2.0b3/TransportMaps/CLI copying TransportMaps/Densities/Densities.py -> TransportMaps-2.0b3/TransportMaps/Densities copying TransportMaps/Densities/__init__.py -> TransportMaps-2.0b3/TransportMaps/Densities copying TransportMaps/Densities/Decomposable/SequentialInferenceDensities.py -> TransportMaps-2.0b3/TransportMaps/Densities/Decomposable copying TransportMaps/Densities/Decomposable/__init__.py -> TransportMaps-2.0b3/TransportMaps/Densities/Decomposable copying TransportMaps/Densities/Inference/InferenceBase.py -> TransportMaps-2.0b3/TransportMaps/Densities/Inference copying TransportMaps/Densities/Inference/__init__.py -> TransportMaps-2.0b3/TransportMaps/Densities/Inference copying TransportMaps/Diagnostics/Plotting.py -> TransportMaps-2.0b3/TransportMaps/Diagnostics copying TransportMaps/Diagnostics/Routines.py -> TransportMaps-2.0b3/TransportMaps/Diagnostics copying TransportMaps/Diagnostics/Validators.py -> TransportMaps-2.0b3/TransportMaps/Diagnostics copying TransportMaps/Diagnostics/__init__.py -> TransportMaps-2.0b3/TransportMaps/Diagnostics copying TransportMaps/Distributions/ConditionalDistributions.py -> TransportMaps-2.0b3/TransportMaps/Distributions copying TransportMaps/Distributions/DistributionBase.py -> TransportMaps-2.0b3/TransportMaps/Distributions copying TransportMaps/Distributions/FrozenDistributions.py -> TransportMaps-2.0b3/TransportMaps/Distributions copying TransportMaps/Distributions/ParametricDistributionBase.py -> TransportMaps-2.0b3/TransportMaps/Distributions copying TransportMaps/Distributions/TransportMapDistributions.py -> TransportMaps-2.0b3/TransportMaps/Distributions copying TransportMaps/Distributions/__init__.py -> TransportMaps-2.0b3/TransportMaps/Distributions copying TransportMaps/Distributions/Decomposable/LinearGaussianSequentialInferenceDistributions.py -> TransportMaps-2.0b3/TransportMaps/Distributions/Decomposable copying TransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.py -> TransportMaps-2.0b3/TransportMaps/Distributions/Decomposable copying TransportMaps/Distributions/Decomposable/__init__.py -> TransportMaps-2.0b3/TransportMaps/Distributions/Decomposable copying TransportMaps/Distributions/Examples/SimpleDistributions.py -> TransportMaps-2.0b3/TransportMaps/Distributions/Examples copying TransportMaps/Distributions/Examples/__init__.py -> TransportMaps-2.0b3/TransportMaps/Distributions/Examples copying TransportMaps/Distributions/Examples/BiochemicalOxigenDemand/BODDistributions.py -> TransportMaps-2.0b3/TransportMaps/Distributions/Examples/BiochemicalOxigenDemand copying TransportMaps/Distributions/Examples/BiochemicalOxigenDemand/__init__.py -> TransportMaps-2.0b3/TransportMaps/Distributions/Examples/BiochemicalOxigenDemand copying TransportMaps/Distributions/Examples/InertialNavigationSystem/INSDistributions.py -> TransportMaps-2.0b3/TransportMaps/Distributions/Examples/InertialNavigationSystem copying TransportMaps/Distributions/Examples/InertialNavigationSystem/__init__.py -> TransportMaps-2.0b3/TransportMaps/Distributions/Examples/InertialNavigationSystem copying TransportMaps/Distributions/Examples/LogGaussianCoxProcess/__init__.py -> TransportMaps-2.0b3/TransportMaps/Distributions/Examples/LogGaussianCoxProcess copying TransportMaps/Distributions/Examples/RailwayVehicleDynamics/__init__.py -> TransportMaps-2.0b3/TransportMaps/Distributions/Examples/RailwayVehicleDynamics copying TransportMaps/Distributions/Examples/RailwayVehicleDynamics/Coradia175/Coradia175VehicleParametersEstimation.py -> TransportMaps-2.0b3/TransportMaps/Distributions/Examples/RailwayVehicleDynamics/Coradia175 copying TransportMaps/Distributions/Examples/RailwayVehicleDynamics/Coradia175/Coradia175VehicleStateSpace.py -> TransportMaps-2.0b3/TransportMaps/Distributions/Examples/RailwayVehicleDynamics/Coradia175 copying TransportMaps/Distributions/Examples/RailwayVehicleDynamics/Coradia175/__init__.py -> TransportMaps-2.0b3/TransportMaps/Distributions/Examples/RailwayVehicleDynamics/Coradia175 copying TransportMaps/Distributions/Examples/ScalarLinearGaussMarkovProcess/Distributions.py -> TransportMaps-2.0b3/TransportMaps/Distributions/Examples/ScalarLinearGaussMarkovProcess copying TransportMaps/Distributions/Examples/ScalarLinearGaussMarkovProcess/__init__.py -> TransportMaps-2.0b3/TransportMaps/Distributions/Examples/ScalarLinearGaussMarkovProcess copying TransportMaps/Distributions/Examples/StochasticVolatility/StocVolHyperDistributions.py -> TransportMaps-2.0b3/TransportMaps/Distributions/Examples/StochasticVolatility copying TransportMaps/Distributions/Examples/StochasticVolatility/__init__.py -> TransportMaps-2.0b3/TransportMaps/Distributions/Examples/StochasticVolatility copying TransportMaps/Distributions/Inference/InferenceBase.py -> TransportMaps-2.0b3/TransportMaps/Distributions/Inference copying TransportMaps/Distributions/Inference/__init__.py -> TransportMaps-2.0b3/TransportMaps/Distributions/Inference copying TransportMaps/Functionals/AlgebraicLinearSpanApproximations.py -> TransportMaps-2.0b3/TransportMaps/Functionals copying TransportMaps/Functionals/FrozenMonotonicFunctions.py -> TransportMaps-2.0b3/TransportMaps/Functionals copying TransportMaps/Functionals/FunctionBase.py -> TransportMaps-2.0b3/TransportMaps/Functionals copying TransportMaps/Functionals/LinearSpanApproximationBase.py -> TransportMaps-2.0b3/TransportMaps/Functionals copying TransportMaps/Functionals/MonotonicFunctionApproximations.py -> TransportMaps-2.0b3/TransportMaps/Functionals copying TransportMaps/Functionals/ParametricFunctionApproximationBase.py -> TransportMaps-2.0b3/TransportMaps/Functionals copying TransportMaps/Functionals/ProductDistributionParametricPullbackComponentFunctionBase.py -> TransportMaps-2.0b3/TransportMaps/Functionals copying TransportMaps/Functionals/__init__.py -> TransportMaps-2.0b3/TransportMaps/Functionals copying TransportMaps/Likelihoods/LikelihoodBase.py -> TransportMaps-2.0b3/TransportMaps/Likelihoods copying TransportMaps/Likelihoods/__init__.py -> TransportMaps-2.0b3/TransportMaps/Likelihoods copying TransportMaps/Maps/FrozenTriangularTransportMaps.py -> TransportMaps-2.0b3/TransportMaps/Maps copying TransportMaps/Maps/FullTransportMaps.py -> TransportMaps-2.0b3/TransportMaps/Maps copying TransportMaps/Maps/MapBase.py -> TransportMaps-2.0b3/TransportMaps/Maps copying TransportMaps/Maps/SimpleTransportMaps.py -> TransportMaps-2.0b3/TransportMaps/Maps copying TransportMaps/Maps/TransportMapBase.py -> TransportMaps-2.0b3/TransportMaps/Maps copying TransportMaps/Maps/TriangularTransportMapBase.py -> TransportMaps-2.0b3/TransportMaps/Maps copying TransportMaps/Maps/TriangularTransportMaps.py -> TransportMaps-2.0b3/TransportMaps/Maps copying TransportMaps/Maps/__init__.py -> TransportMaps-2.0b3/TransportMaps/Maps copying TransportMaps/Maps/Decomposable/SequentialInferenceMaps.py -> TransportMaps-2.0b3/TransportMaps/Maps/Decomposable copying TransportMaps/Maps/Decomposable/__init__.py -> TransportMaps-2.0b3/TransportMaps/Maps/Decomposable copying TransportMaps/Optimization/Optimizers.py -> TransportMaps-2.0b3/TransportMaps/Optimization copying TransportMaps/Optimization/__init__.py -> TransportMaps-2.0b3/TransportMaps/Optimization copying TransportMaps/RandomizedLinearAlgebra/RandomizedLinearAlgebra.py -> TransportMaps-2.0b3/TransportMaps/RandomizedLinearAlgebra copying TransportMaps/RandomizedLinearAlgebra/__init__.py -> TransportMaps-2.0b3/TransportMaps/RandomizedLinearAlgebra copying TransportMaps/Samplers/IndependentSamplers.py -> TransportMaps-2.0b3/TransportMaps/Samplers copying TransportMaps/Samplers/MarkovChainSamplers.py -> TransportMaps-2.0b3/TransportMaps/Samplers copying TransportMaps/Samplers/Routines.py -> TransportMaps-2.0b3/TransportMaps/Samplers copying TransportMaps/Samplers/SamplerBase.py -> TransportMaps-2.0b3/TransportMaps/Samplers copying TransportMaps/Samplers/__init__.py -> TransportMaps-2.0b3/TransportMaps/Samplers copying TransportMaps/XML/Parser.py -> TransportMaps-2.0b3/TransportMaps/XML copying TransportMaps/XML/__init__.py -> TransportMaps-2.0b3/TransportMaps/XML copying TransportMaps/XML/schema/map.xsd -> TransportMaps-2.0b3/TransportMaps/XML/schema copying TransportMaps/tests/TestFunctions.py -> TransportMaps-2.0b3/TransportMaps/tests copying TransportMaps/tests/__init__.py -> TransportMaps-2.0b3/TransportMaps/tests copying TransportMaps/tests/test_L2_minimization.py -> TransportMaps-2.0b3/TransportMaps/tests copying TransportMaps/tests/test_L2_misfit.py -> TransportMaps-2.0b3/TransportMaps/tests copying TransportMaps/tests/test_all.py -> TransportMaps-2.0b3/TransportMaps/tests copying TransportMaps/tests/test_distributions.py -> TransportMaps-2.0b3/TransportMaps/tests copying TransportMaps/tests/test_functions.py -> TransportMaps-2.0b3/TransportMaps/tests copying TransportMaps/tests/test_kl_divergence.py -> TransportMaps-2.0b3/TransportMaps/tests copying TransportMaps/tests/test_kl_minimization.py -> TransportMaps-2.0b3/TransportMaps/tests copying TransportMaps/tests/test_laplace.py -> TransportMaps-2.0b3/TransportMaps/tests copying TransportMaps/tests/test_rla.py -> TransportMaps-2.0b3/TransportMaps/tests copying TransportMaps/tests/test_scripts.py -> TransportMaps-2.0b3/TransportMaps/tests copying TransportMaps/tests/test_sequential_inference.py -> TransportMaps-2.0b3/TransportMaps/tests copying TransportMaps/tests/test_transportmap_distributions.py -> TransportMaps-2.0b3/TransportMaps/tests copying TransportMaps/tests/test_transportmap_distributions_sampling.py -> TransportMaps-2.0b3/TransportMaps/tests copying TransportMaps/tests/test_transportmaps.py -> TransportMaps-2.0b3/TransportMaps/tests copying TransportMaps/tests/test_xml.py -> TransportMaps-2.0b3/TransportMaps/tests copying TransportMaps/tests/xml/maps/FullOrdIntExpLinearMap_5d.xml -> TransportMaps-2.0b3/TransportMaps/tests/xml/maps copying TransportMaps/tests/xml/maps/FullOrdIntExpNonLinearHeadMap_5d.xml -> TransportMaps-2.0b3/TransportMaps/tests/xml/maps copying TransportMaps/tests/xml/maps/FullOrdIntExpNonLinearMap_5d.xml -> TransportMaps-2.0b3/TransportMaps/tests/xml/maps copying TransportMaps/tests/xml/maps/FullOrdIntExpTriDiagonalMap_5d.xml -> TransportMaps-2.0b3/TransportMaps/tests/xml/maps copying TransportMaps/tests/xml/maps/FullOrdMonotLinearSpanLinearMap_5d.xml -> TransportMaps-2.0b3/TransportMaps/tests/xml/maps copying TransportMaps/tests/xml/maps/MultiIdxMonotLinearSpanLinearMap_5d.xml -> TransportMaps-2.0b3/TransportMaps/tests/xml/maps copying TransportMaps/tests/xml/maps/TotalOrdIntExpDiagonalMap_5d.xml -> TransportMaps-2.0b3/TransportMaps/tests/xml/maps copying TransportMaps/tests/xml/maps/TotalOrdIntExpLinearMap_5d.xml -> TransportMaps-2.0b3/TransportMaps/tests/xml/maps copying TransportMaps/tests/xml/maps/TotalOrdIntExpNonLinearHeadMap_5d.xml -> TransportMaps-2.0b3/TransportMaps/tests/xml/maps copying TransportMaps/tests/xml/maps/TotalOrdIntExpNonLinearMap_5d.xml -> TransportMaps-2.0b3/TransportMaps/tests/xml/maps copying TransportMaps/tests/xml/maps/TotalOrdIntExpNonLinearRBFMap_5d.xml -> TransportMaps-2.0b3/TransportMaps/tests/xml/maps copying TransportMaps/tests/xml/maps/TotalOrdIntExpTriDiagonalMap_5d.xml -> TransportMaps-2.0b3/TransportMaps/tests/xml/maps copying TransportMaps/tests/xml/maps/TotalOrdIntSqLinearMap_5d.xml -> TransportMaps-2.0b3/TransportMaps/tests/xml/maps copying TransportMaps/tests/xml/maps/TotalOrdIntSqNonLinearHeadMap_5d.xml -> TransportMaps-2.0b3/TransportMaps/tests/xml/maps copying TransportMaps/tests/xml/maps/TotalOrdMonotLinearSpanLinearMap_5d.xml -> TransportMaps-2.0b3/TransportMaps/tests/xml/maps copying scripts/tmap-adaptivity-postprocess -> TransportMaps-2.0b3/scripts copying scripts/tmap-laplace -> TransportMaps-2.0b3/scripts copying scripts/tmap-load-dill -> TransportMaps-2.0b3/scripts copying scripts/tmap-max-likelihood -> TransportMaps-2.0b3/scripts copying scripts/tmap-postprocess -> TransportMaps-2.0b3/scripts copying scripts/tmap-sequential-postprocess -> TransportMaps-2.0b3/scripts copying scripts/tmap-sequential-tm -> TransportMaps-2.0b3/scripts copying scripts/tmap-tm -> TransportMaps-2.0b3/scripts Writing TransportMaps-2.0b3/setup.cfg Creating tar archive removing 'TransportMaps-2.0b3' (and everything under it) + cd tmp_sdist + echo Installing Installing ++ ls + INSTALLER=TransportMaps-2.0b3.tar.gz + PIP_FLAGS=--no-cache-dir + CC=clang + MPI=False + H5PY=True + python /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/bin/pip install --upgrade TransportMaps-2.0b3.tar.gz DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. Processing ./TransportMaps-2.0b3.tar.gz Requirement already satisfied, skipping upgrade: numpy>=1.14 in /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/lib/python2.7/site-packages (from TransportMaps==2.0b3) (1.16.4) Collecting orthpol_light>=1.0.1 (from TransportMaps==2.0b3) /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/local/lib/python2.7/site-packages/pip/_vendor/urllib3/util/ssl_.py:354: SNIMissingWarning: An HTTPS request has been made, but the SNI (Server Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings SNIMissingWarning /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/local/lib/python2.7/site-packages/pip/_vendor/urllib3/util/ssl_.py:150: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings InsecurePlatformWarning /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/local/lib/python2.7/site-packages/pip/_vendor/urllib3/util/ssl_.py:150: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings InsecurePlatformWarning Downloading https://files.pythonhosted.org/packages/0c/93/7a8d45bd2865757014c9910ca0a05962c879a2ca3a33498e347bda341df2/orthpol_light-1.0.1.tar.gz Collecting scipy (from TransportMaps==2.0b3) Downloading https://files.pythonhosted.org/packages/1d/f6/7c16d60aeb3694e5611976cb4f1eaf1c6b7f1e7c55771d691013405a02ea/scipy-1.2.2-cp27-cp27mu-manylinux1_x86_64.whl (24.8MB) Collecting SpectralToolbox>=1.0.7 (from TransportMaps==2.0b3) Downloading https://files.pythonhosted.org/packages/92/35/13b7eb420c245721d10b4ea7b7f7f8bbfe85a46008d0d8d6dec4aed0f552/SpectralToolbox-1.0.12.tar.gz (697kB) Collecting dill (from TransportMaps==2.0b3) Downloading https://files.pythonhosted.org/packages/fe/42/bfe2e0857bc284cbe6a011d93f2a9ad58a22cb894461b199ae72cfef0f29/dill-0.2.9.tar.gz (150kB) Collecting scikit-sparse (from TransportMaps==2.0b3) Downloading https://files.pythonhosted.org/packages/af/14/08a13ccf3b4e0300cf47641f959b8062376a73efc4c8265f2b6f6eae04fc/scikit-sparse-0.4.4.tar.gz (385kB) Collecting mpi4py (from TransportMaps==2.0b3) Downloading https://files.pythonhosted.org/packages/04/f5/a615603ce4ab7f40b65dba63759455e3da610d9a155d4d4cece1d8fd6706/mpi4py-3.0.2.tar.gz (1.4MB) Collecting h5py (from TransportMaps==2.0b3) Downloading https://files.pythonhosted.org/packages/53/08/27e4e9a369321862ffdce80ff1770553e9daec65d98befb2e14e7478b698/h5py-2.9.0-cp27-cp27mu-manylinux1_x86_64.whl (2.8MB) Collecting six (from h5py->TransportMaps==2.0b3) Downloading https://files.pythonhosted.org/packages/73/fb/00a976f728d0d1fecfe898238ce23f502a721c0ac0ecfedb80e0d88c64e9/six-1.12.0-py2.py3-none-any.whl Building wheels for collected packages: TransportMaps, orthpol-light, SpectralToolbox, dill, scikit-sparse, mpi4py Building wheel for TransportMaps (setup.py): started Building wheel for TransportMaps (setup.py): finished with status 'done' Stored in directory: /home/jenkins/.cache/pip/wheels/0b/c5/b5/e1efca364f31aac7ab2ee927d66735dcd10db40456ad88235f Building wheel for orthpol-light (setup.py): started Building wheel for orthpol-light (setup.py): finished with status 'error' ERROR: Complete output from command /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/bin/python -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-install-XmiENy/orthpol-light/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-zfNOh8 --python-tag cp27: ERROR: running bdist_wheel running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building extension "orthpol_light" sources f2py options: [] adding 'build/src.linux-x86_64-2.7/build/src.linux-x86_64-2.7/fortranobject.c' to sources. adding 'build/src.linux-x86_64-2.7/build/src.linux-x86_64-2.7' to include_dirs. adding 'build/src.linux-x86_64-2.7/orthpol_light-f2pywrappers.f' to sources. build_src: building npy-pkg config files running build_ext customize UnixCCompiler customize UnixCCompiler using build_ext get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor']' customize Gnu95FCompiler Found executable /usr/bin/gfortran customize Gnu95FCompiler customize Gnu95FCompiler using build_ext building 'orthpol_light' extension compiling C sources C compiler: clang -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC creating build/temp.linux-x86_64-2.7/build creating build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7 creating build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/build creating build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/build/src.linux-x86_64-2.7 compile options: '-Ibuild/src.linux-x86_64-2.7/build/src.linux-x86_64-2.7 -I/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/local/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c' clang: build/src.linux-x86_64-2.7/orthpol_lightmodule.c clang: build/src.linux-x86_64-2.7/build/src.linux-x86_64-2.7/fortranobject.c error: Command "clang -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -Ibuild/src.linux-x86_64-2.7/build/src.linux-x86_64-2.7 -I/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/local/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c build/src.linux-x86_64-2.7/build/src.linux-x86_64-2.7/fortranobject.c -o build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/build/src.linux-x86_64-2.7/fortranobject.o -MMD -MF build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/build/src.linux-x86_64-2.7/fortranobject.o.d" failed with exit status 127 ---------------------------------------- ERROR: Failed building wheel for orthpol-light Running setup.py clean for orthpol-light Building wheel for SpectralToolbox (setup.py): started Building wheel for SpectralToolbox (setup.py): finished with status 'error' ERROR: Complete output from command /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/bin/python -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-install-XmiENy/SpectralToolbox/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-rUmILC --python-tag cp27: ERROR: running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-2.7 creating build/lib.linux-x86_64-2.7/SpectralToolbox copying SpectralToolbox/Stroud.py -> build/lib.linux-x86_64-2.7/SpectralToolbox copying SpectralToolbox/HeterogeneousSparseGrids.py -> build/lib.linux-x86_64-2.7/SpectralToolbox copying SpectralToolbox/SparseGrids.py -> build/lib.linux-x86_64-2.7/SpectralToolbox copying SpectralToolbox/SpectralND.py -> build/lib.linux-x86_64-2.7/SpectralToolbox copying SpectralToolbox/Misc.py -> build/lib.linux-x86_64-2.7/SpectralToolbox copying SpectralToolbox/_version.py -> build/lib.linux-x86_64-2.7/SpectralToolbox copying SpectralToolbox/__init__.py -> build/lib.linux-x86_64-2.7/SpectralToolbox creating build/lib.linux-x86_64-2.7/SpectralToolbox/Spectral1D copying SpectralToolbox/Spectral1D/Constants.py -> build/lib.linux-x86_64-2.7/SpectralToolbox/Spectral1D copying SpectralToolbox/Spectral1D/LagrangePolynomials.py -> build/lib.linux-x86_64-2.7/SpectralToolbox/Spectral1D copying SpectralToolbox/Spectral1D/OldInterface.py -> build/lib.linux-x86_64-2.7/SpectralToolbox/Spectral1D copying SpectralToolbox/Spectral1D/OrthogonalPolynomials.py -> build/lib.linux-x86_64-2.7/SpectralToolbox/Spectral1D copying SpectralToolbox/Spectral1D/auxiliary.py -> build/lib.linux-x86_64-2.7/SpectralToolbox/Spectral1D copying SpectralToolbox/Spectral1D/OrthogonalFunctions.py -> build/lib.linux-x86_64-2.7/SpectralToolbox/Spectral1D copying SpectralToolbox/Spectral1D/NonOrthogonalBasis.py -> build/lib.linux-x86_64-2.7/SpectralToolbox/Spectral1D copying SpectralToolbox/Spectral1D/LinearInterpolation.py -> build/lib.linux-x86_64-2.7/SpectralToolbox/Spectral1D copying SpectralToolbox/Spectral1D/__init__.py -> build/lib.linux-x86_64-2.7/SpectralToolbox/Spectral1D copying SpectralToolbox/Spectral1D/AbstractClasses.py -> build/lib.linux-x86_64-2.7/SpectralToolbox/Spectral1D copying SpectralToolbox/Spectral1D/AlgebraicPolynomials.py -> build/lib.linux-x86_64-2.7/SpectralToolbox/Spectral1D creating build/lib.linux-x86_64-2.7/SpectralToolbox/tests copying SpectralToolbox/tests/test_all.py -> build/lib.linux-x86_64-2.7/SpectralToolbox/tests copying SpectralToolbox/tests/plot_integrated_squared.py -> build/lib.linux-x86_64-2.7/SpectralToolbox/tests copying SpectralToolbox/tests/test_squared_orth.py -> build/lib.linux-x86_64-2.7/SpectralToolbox/tests copying SpectralToolbox/tests/__init__.py -> build/lib.linux-x86_64-2.7/SpectralToolbox/tests copying SpectralToolbox/tests/test_spectral1d.py -> build/lib.linux-x86_64-2.7/SpectralToolbox/tests running egg_info writing requirements to SpectralToolbox.egg-info/requires.txt writing SpectralToolbox.egg-info/PKG-INFO writing top-level names to SpectralToolbox.egg-info/top_level.txt writing dependency_links to SpectralToolbox.egg-info/dependency_links.txt reading manifest file 'SpectralToolbox.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching '.hgignore' writing manifest file 'SpectralToolbox.egg-info/SOURCES.txt' creating build/lib.linux-x86_64-2.7/SpectralToolbox/Spectral1D/XML creating build/lib.linux-x86_64-2.7/SpectralToolbox/Spectral1D/XML/schema copying SpectralToolbox/Spectral1D/XML/schema/basis.xsd -> build/lib.linux-x86_64-2.7/SpectralToolbox/Spectral1D/XML/schema running build_ext building 'polymod' extension creating build/temp.linux-x86_64-2.7 creating build/temp.linux-x86_64-2.7/src clang -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -I/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/local/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c src/tools.cpp -o build/temp.linux-x86_64-2.7/src/tools.o -O3 unable to execute 'clang': No such file or directory error: command 'clang' failed with exit status 1 ---------------------------------------- ERROR: Failed building wheel for SpectralToolbox Running setup.py clean for SpectralToolbox Building wheel for dill (setup.py): started Building wheel for dill (setup.py): finished with status 'done' Stored in directory: /home/jenkins/.cache/pip/wheels/5b/d7/0f/e58eae695403de585269f4e4a94e0cd6ca60ec0c202936fa4a Building wheel for scikit-sparse (setup.py): started Building wheel for scikit-sparse (setup.py): finished with status 'error' ERROR: Complete output from command /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/bin/python -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-install-XmiENy/scikit-sparse/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-4kdOMe --python-tag cp27: ERROR: running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-2.7 creating build/lib.linux-x86_64-2.7/sksparse copying sksparse/test_cholmod.py -> build/lib.linux-x86_64-2.7/sksparse copying sksparse/_version.py -> build/lib.linux-x86_64-2.7/sksparse copying sksparse/__init__.py -> build/lib.linux-x86_64-2.7/sksparse creating build/lib.linux-x86_64-2.7/sksparse/test_data copying sksparse/test_data/illc1033.mtx.gz -> build/lib.linux-x86_64-2.7/sksparse/test_data copying sksparse/test_data/well1033_rhs1.mtx.gz -> build/lib.linux-x86_64-2.7/sksparse/test_data copying sksparse/test_data/illc1850_rhs1.mtx.gz -> build/lib.linux-x86_64-2.7/sksparse/test_data copying sksparse/test_data/well1033.mtx.gz -> build/lib.linux-x86_64-2.7/sksparse/test_data copying sksparse/test_data/well1850.mtx.gz -> build/lib.linux-x86_64-2.7/sksparse/test_data copying sksparse/test_data/illc1033_rhs1.mtx.gz -> build/lib.linux-x86_64-2.7/sksparse/test_data copying sksparse/test_data/illc1850.mtx.gz -> build/lib.linux-x86_64-2.7/sksparse/test_data copying sksparse/test_data/well1850_rhs1.mtx.gz -> build/lib.linux-x86_64-2.7/sksparse/test_data UPDATING build/lib.linux-x86_64-2.7/sksparse/_version.py set build/lib.linux-x86_64-2.7/sksparse/_version.py to '0.4.4' running build_ext skipping 'sksparse/cholmod.c' Cython extension (up-to-date) building 'sksparse.cholmod' extension creating build/temp.linux-x86_64-2.7 creating build/temp.linux-x86_64-2.7/sksparse clang -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -I/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/local/lib/python2.7/site-packages/numpy/core/include -I/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/include -I/usr/include/suitesparse -I/usr/include/python2.7 -c sksparse/cholmod.c -o build/temp.linux-x86_64-2.7/sksparse/cholmod.o unable to execute 'clang': No such file or directory error: command 'clang' failed with exit status 1 ---------------------------------------- ERROR: Failed building wheel for scikit-sparse Running setup.py clean for scikit-sparse Building wheel for mpi4py (setup.py): started Building wheel for mpi4py (setup.py): finished with status 'done' Stored in directory: /home/jenkins/.cache/pip/wheels/a7/12/be/11b9ba83d337f1647a0fdea73fbe28a58b0593e64723233d64 Successfully built TransportMaps dill mpi4py Failed to build orthpol-light SpectralToolbox scikit-sparse Installing collected packages: orthpol-light, scipy, SpectralToolbox, dill, scikit-sparse, mpi4py, six, h5py, TransportMaps Running setup.py install for orthpol-light: started Running setup.py install for orthpol-light: finished with status 'error' ERROR: Complete output from command /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/bin/python -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-install-XmiENy/orthpol-light/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-ZUxc_g/install-record.txt --single-version-externally-managed --compile --install-headers /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/include/site/python2.7/orthpol-light: ERROR: running install running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building extension "orthpol_light" sources f2py options: [] adding 'build/src.linux-x86_64-2.7/build/src.linux-x86_64-2.7/fortranobject.c' to sources. adding 'build/src.linux-x86_64-2.7/build/src.linux-x86_64-2.7' to include_dirs. adding 'build/src.linux-x86_64-2.7/orthpol_light-f2pywrappers.f' to sources. build_src: building npy-pkg config files running build_ext customize UnixCCompiler customize UnixCCompiler using build_ext get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor']' customize Gnu95FCompiler Found executable /usr/bin/gfortran customize Gnu95FCompiler customize Gnu95FCompiler using build_ext building 'orthpol_light' extension compiling C sources C compiler: clang -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC creating build/temp.linux-x86_64-2.7/build creating build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7 creating build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/build creating build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/build/src.linux-x86_64-2.7 compile options: '-Ibuild/src.linux-x86_64-2.7/build/src.linux-x86_64-2.7 -I/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/local/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c' clang: build/src.linux-x86_64-2.7/orthpol_lightmodule.c clang: build/src.linux-x86_64-2.7/build/src.linux-x86_64-2.7/fortranobject.c error: Command "clang -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -Ibuild/src.linux-x86_64-2.7/build/src.linux-x86_64-2.7 -I/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/local/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c build/src.linux-x86_64-2.7/orthpol_lightmodule.c -o build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/orthpol_lightmodule.o -MMD -MF build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/orthpol_lightmodule.o.d" failed with exit status 127 ---------------------------------------- ERROR: Command "/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/bin/python -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-install-XmiENy/orthpol-light/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-ZUxc_g/install-record.txt --single-version-externally-managed --compile --install-headers /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/include/site/python2.7/orthpol-light" failed with error code 1 in /tmp/pip-install-XmiENy/orthpol-light/ Build step 'Execute shell' marked build as failure [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Skipped based on build state FAILURE Finished: FAILURE