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Started by upstream project "TransportMaps-private-master" build number 111 originally caused by: Started by BitBucket push by Daniele Bigoni Started by BitBucket push by Daniele Bigoni Running as SYSTEM [EnvInject] - Loading node environment variables. Building remotely on reynolds-ubuntu14 in workspace /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... No credentials specified Cloning the remote Git repository Cloning repository git@bitbucket.org:dabi86/transportmaps-private.git > git init /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv # timeout=10 Fetching upstream changes from git@bitbucket.org:dabi86/transportmaps-private.git > git --version # timeout=10 > git fetch --tags --progress git@bitbucket.org:dabi86/transportmaps-private.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url git@bitbucket.org:dabi86/transportmaps-private.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url git@bitbucket.org:dabi86/transportmaps-private.git # timeout=10 Fetching upstream changes from git@bitbucket.org:dabi86/transportmaps-private.git > git fetch --tags --progress git@bitbucket.org:dabi86/transportmaps-private.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision 9574b9da2c23e7d99c522541ec6046368b04b795 (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 9574b9da2c23e7d99c522541ec6046368b04b795 # timeout=10 Commit message: "test-source.sh added PATH for Jenkins" First time build. Skipping changelog. [virtualenv] $ /bin/bash -xe /tmp/jenkins5011384498916870290.sh + bash -ex jenkins/test-source.sh + set -e + PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/jenkins/.local/bin ++ pwd + ROOT=/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv ++ echo TransportMaps-private-master/COMPILER=clang,MACHINE=reynolds-ubuntu14,PYTHON_EXE=python3,VENV_SYS=virtualenv ++ cut -d / -f 1 + TEST_NAME=TransportMaps-private-master + ENV_NAME=venv_TransportMaps-private-master_python3 + VENV_OPTS= + [[ TransportMaps-private-master == *\m\p\i* ]] + TTYPE=serial + MPI=False ++ hostname + [[ reynolds-ubuntu14 == *\m\a\c\y\s* ]] ++ hostname + [[ reynolds-ubuntu14 == \m\a\c\y\s\-\S\i\e\r\r\a ]] ++ hostname + [[ reynolds-ubuntu14 == *\r\e\y\n\o\l\d\s* ]] + export PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/jenkins/.local/bin:/home/jenkins/bin + PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/jenkins/.local/bin:/home/jenkins/bin + '[' virtualenv = virtualenv ']' + rm -rf venv_TransportMaps-private-master_python3 + virtualenv --python=python3 venv_TransportMaps-private-master_python3 Using base prefix '/usr' New python executable in /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/bin/python3 Also creating executable in /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/bin/python Installing setuptools, pip, wheel... done. Running virtualenv with interpreter /usr/bin/python3 + source venv_TransportMaps-private-master_python3/bin/activate ++ deactivate nondestructive ++ unset -f pydoc ++ '[' -z '' ']' ++ '[' -z '' ']' ++ '[' -n /bin/bash ']' ++ hash -r ++ '[' -z '' ']' ++ unset VIRTUAL_ENV ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3 ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/jenkins/.local/bin:/home/jenkins/bin ++ PATH=/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/jenkins/.local/bin:/home/jenkins/bin ++ export PATH ++ '[' -z '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ '[' x '!=' x ']' +++ basename /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3 ++ PS1='(venv_TransportMaps-private-master_python3) ' ++ export PS1 ++ alias pydoc ++ true ++ '[' -n /bin/bash ']' ++ hash -r ++ python -V + PY_VERS='Python 3.4.3' + CMD='import logging;' + CMD+='import TransportMaps as TM;' + CMD+='import warnings;' + CMD+='warnings.simplefilter('\''ignore'\'');' + CMD+='TM.tests.run_all(log_level=logging.ERROR,ttype='\''serial'\'')' + echo '' + echo 'TEST_NAME: TransportMaps-private-master' TEST_NAME: TransportMaps-private-master ++ hostname + echo 'HOSTNAME: reynolds-ubuntu14' HOSTNAME: reynolds-ubuntu14 + echo 'PATH: /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/jenkins/.local/bin:/home/jenkins/bin' PATH: /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/jenkins/.local/bin:/home/jenkins/bin + echo 'VENV_OPTS: ' VENV_OPTS: + echo 'PY-VERS: Python 3.4.3' PY-VERS: Python 3.4.3 + echo 'PY-CMD: import logging;import TransportMaps as TM;import warnings;warnings.simplefilter('\''ignore'\'');TM.tests.run_all(log_level=logging.ERROR,ttype='\''serial'\'')' PY-CMD: import logging;import TransportMaps as TM;import warnings;warnings.simplefilter('ignore');TM.tests.run_all(log_level=logging.ERROR,ttype='serial') + echo '' + echo 'Upgrading pip' Upgrading pip + python /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/bin/pip install --upgrade pip DEPRECATION: Python 3.4 support has been deprecated. pip 19.1 will be the last one supporting it. Please upgrade your Python as Python 3.4 won't be maintained after March 2019 (cf PEP 429). Requirement already up-to-date: pip in ./venv_TransportMaps-private-master_python3/lib/python3.4/site-packages (19.1.1) + echo 'Installing numpy' Installing numpy + python /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/bin/pip install --upgrade numpy DEPRECATION: Python 3.4 support has been deprecated. pip 19.1 will be the last one supporting it. Please upgrade your Python as Python 3.4 won't be maintained after March 2019 (cf PEP 429). Collecting numpy Using cached https://files.pythonhosted.org/packages/d3/4b/f9f4b96c0b1ba43d28a5bdc4b64f0b9d3fbcf31313a51bc766942866a7c7/numpy-1.16.4.zip Building wheels for collected packages: numpy Building wheel for numpy (setup.py): started Building wheel for numpy (setup.py): finished with status 'error' ERROR: Complete output from command /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/bin/python -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-install-xmyxpz4n/numpy/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ym0qx3xx --python-tag cp34: ERROR: Running from numpy source directory. blas_opt_info: blas_mkl_info: customize UnixCCompiler libraries mkl_rt not found in ['/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] NOT AVAILABLE blis_info: customize UnixCCompiler libraries blis not found in ['/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] NOT AVAILABLE openblas_info: customize UnixCCompiler customize UnixCCompiler libraries openblas not found in ['/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] NOT AVAILABLE atlas_3_10_blas_threads_info: Setting PTATLAS=ATLAS customize UnixCCompiler libraries tatlas not found in ['/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] NOT AVAILABLE atlas_3_10_blas_info: customize UnixCCompiler libraries satlas not found in ['/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] NOT AVAILABLE atlas_blas_threads_info: Setting PTATLAS=ATLAS customize UnixCCompiler libraries ptf77blas,ptcblas,atlas not found in ['/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] NOT AVAILABLE atlas_blas_info: customize UnixCCompiler libraries f77blas,cblas,atlas not found in ['/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] NOT AVAILABLE accelerate_info: NOT AVAILABLE /tmp/pip-install-xmyxpz4n/numpy/numpy/distutils/system_info.py:639: UserWarning: Atlas (http://math-atlas.sourceforge.net/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [atlas]) or by setting the ATLAS environment variable. self.calc_info() blas_info: customize UnixCCompiler customize UnixCCompiler C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC creating /tmp/tmpq3u2ecjg/tmp creating /tmp/tmpq3u2ecjg/tmp/tmpq3u2ecjg compile options: '-I/usr/local/include -I/usr/include -I/usr/include/suitesparse -c' x86_64-linux-gnu-gcc: /tmp/tmpq3u2ecjg/source.c x86_64-linux-gnu-gcc -pthread /tmp/tmpq3u2ecjg/tmp/tmpq3u2ecjg/source.o -lcblas -o /tmp/tmpq3u2ecjg/a.out /usr/bin/ld: cannot find -lcblas collect2: error: ld returned 1 exit status x86_64-linux-gnu-gcc -pthread /tmp/tmpq3u2ecjg/tmp/tmpq3u2ecjg/source.o -lblas -o /tmp/tmpq3u2ecjg/a.out customize UnixCCompiler FOUND: define_macros = [('HAVE_CBLAS', None)] libraries = ['blas', 'blas'] library_dirs = ['/usr/lib'] include_dirs = ['/usr/local/include', '/usr/include', '/usr/include/suitesparse'] language = c FOUND: define_macros = [('NO_ATLAS_INFO', 1), ('HAVE_CBLAS', None)] libraries = ['blas', 'blas'] library_dirs = ['/usr/lib'] include_dirs = ['/usr/local/include', '/usr/include', '/usr/include/suitesparse'] language = c /bin/sh: 1: svnversion: not found non-existing path in 'numpy/distutils': 'site.cfg' lapack_opt_info: lapack_mkl_info: customize UnixCCompiler libraries mkl_rt not found in ['/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] NOT AVAILABLE openblas_lapack_info: customize UnixCCompiler customize UnixCCompiler libraries openblas not found in ['/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] NOT AVAILABLE openblas_clapack_info: customize UnixCCompiler customize UnixCCompiler libraries openblas,lapack not found in ['/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] NOT AVAILABLE atlas_3_10_threads_info: Setting PTATLAS=ATLAS customize UnixCCompiler libraries lapack_atlas not found in /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib customize UnixCCompiler libraries tatlas,tatlas not found in /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib customize UnixCCompiler libraries lapack_atlas not found in /usr/local/lib customize UnixCCompiler libraries tatlas,tatlas not found in /usr/local/lib customize UnixCCompiler libraries lapack_atlas not found in /usr/lib customize UnixCCompiler libraries tatlas,tatlas not found in /usr/lib customize UnixCCompiler libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu customize UnixCCompiler libraries tatlas,tatlas not found in /usr/lib/x86_64-linux-gnu <class 'numpy.distutils.system_info.atlas_3_10_threads_info'> NOT AVAILABLE atlas_3_10_info: customize UnixCCompiler libraries lapack_atlas not found in /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib customize UnixCCompiler libraries satlas,satlas not found in /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib customize UnixCCompiler libraries lapack_atlas not found in /usr/local/lib customize UnixCCompiler libraries satlas,satlas not found in /usr/local/lib customize UnixCCompiler libraries lapack_atlas not found in /usr/lib customize UnixCCompiler libraries satlas,satlas not found in /usr/lib customize UnixCCompiler libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu customize UnixCCompiler libraries satlas,satlas not found in /usr/lib/x86_64-linux-gnu <class 'numpy.distutils.system_info.atlas_3_10_info'> NOT AVAILABLE atlas_threads_info: Setting PTATLAS=ATLAS customize UnixCCompiler libraries lapack_atlas not found in /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib customize UnixCCompiler libraries ptf77blas,ptcblas,atlas not found in /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib customize UnixCCompiler libraries lapack_atlas not found in /usr/local/lib customize UnixCCompiler libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib customize UnixCCompiler libraries lapack_atlas not found in /usr/lib customize UnixCCompiler libraries ptf77blas,ptcblas,atlas not found in /usr/lib customize UnixCCompiler libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu customize UnixCCompiler libraries ptf77blas,ptcblas,atlas not found in /usr/lib/x86_64-linux-gnu <class 'numpy.distutils.system_info.atlas_threads_info'> NOT AVAILABLE atlas_info: customize UnixCCompiler libraries lapack_atlas not found in /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib customize UnixCCompiler libraries f77blas,cblas,atlas not found in /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib customize UnixCCompiler libraries lapack_atlas not found in /usr/local/lib customize UnixCCompiler libraries f77blas,cblas,atlas not found in /usr/local/lib customize UnixCCompiler libraries lapack_atlas not found in /usr/lib customize UnixCCompiler libraries f77blas,cblas,atlas not found in /usr/lib customize UnixCCompiler libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu customize UnixCCompiler libraries f77blas,cblas,atlas not found in /usr/lib/x86_64-linux-gnu <class 'numpy.distutils.system_info.atlas_info'> NOT AVAILABLE /tmp/pip-install-xmyxpz4n/numpy/numpy/distutils/system_info.py:639: UserWarning: Atlas (http://math-atlas.sourceforge.net/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [atlas]) or by setting the ATLAS environment variable. self.calc_info() lapack_info: customize UnixCCompiler customize UnixCCompiler FOUND: libraries = ['lapack', 'lapack'] library_dirs = ['/usr/lib'] language = f77 FOUND: define_macros = [('NO_ATLAS_INFO', 1), ('HAVE_CBLAS', None)] libraries = ['lapack', 'lapack', 'blas', 'blas'] library_dirs = ['/usr/lib'] language = c include_dirs = ['/usr/local/include', '/usr/include', '/usr/include/suitesparse'] /usr/lib/python3.4/distutils/dist.py:260: UserWarning: Unknown distribution option: 'define_macros' warnings.warn(msg) running bdist_wheel running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building py_modules sources creating build creating build/src.linux-x86_64-3.4 creating build/src.linux-x86_64-3.4/numpy creating build/src.linux-x86_64-3.4/numpy/distutils building library "npymath" sources get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor']' customize Gnu95FCompiler Found executable /usr/bin/gfortran customize Gnu95FCompiler customize Gnu95FCompiler using config C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC compile options: '-Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/include/python3.4m -I/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/include/python3.4m -c' x86_64-linux-gnu-gcc: _configtest.c x86_64-linux-gnu-gcc -pthread _configtest.o -o _configtest success! removing: _configtest.c _configtest.o _configtest.o.d _configtest C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC compile options: '-Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/include/python3.4m -I/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/include/python3.4m -c' x86_64-linux-gnu-gcc: _configtest.c _configtest.c:1:5: warning: conflicting types for built-in function ‘exp’ [enabled by default] int exp (void); ^ x86_64-linux-gnu-gcc -pthread _configtest.o -o _configtest _configtest.o: In function `main': /tmp/pip-install-xmyxpz4n/numpy/_configtest.c:6: undefined reference to `exp' collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o _configtest.o.d C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC compile options: '-Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/include/python3.4m -I/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/include/python3.4m -c' x86_64-linux-gnu-gcc: _configtest.c _configtest.c:1:5: warning: conflicting types for built-in function ‘exp’ [enabled by default] int exp (void); ^ x86_64-linux-gnu-gcc -pthread _configtest.o -lm -o _configtest success! removing: _configtest.c _configtest.o _configtest.o.d _configtest creating build/src.linux-x86_64-3.4/numpy/core creating build/src.linux-x86_64-3.4/numpy/core/src creating build/src.linux-x86_64-3.4/numpy/core/src/npymath conv_template:> build/src.linux-x86_64-3.4/numpy/core/src/npymath/npy_math_internal.h adding 'build/src.linux-x86_64-3.4/numpy/core/src/npymath' to include_dirs. conv_template:> build/src.linux-x86_64-3.4/numpy/core/src/npymath/ieee754.c conv_template:> build/src.linux-x86_64-3.4/numpy/core/src/npymath/npy_math_complex.c None - nothing done with h_files = ['build/src.linux-x86_64-3.4/numpy/core/src/npymath/npy_math_internal.h'] building library "npysort" sources creating build/src.linux-x86_64-3.4/numpy/core/src/common conv_template:> build/src.linux-x86_64-3.4/numpy/core/src/common/npy_sort.h adding 'build/src.linux-x86_64-3.4/numpy/core/src/common' to include_dirs. creating build/src.linux-x86_64-3.4/numpy/core/src/npysort conv_template:> build/src.linux-x86_64-3.4/numpy/core/src/npysort/quicksort.c conv_template:> build/src.linux-x86_64-3.4/numpy/core/src/npysort/mergesort.c conv_template:> build/src.linux-x86_64-3.4/numpy/core/src/npysort/heapsort.c conv_template:> build/src.linux-x86_64-3.4/numpy/core/src/common/npy_partition.h conv_template:> build/src.linux-x86_64-3.4/numpy/core/src/npysort/selection.c conv_template:> build/src.linux-x86_64-3.4/numpy/core/src/common/npy_binsearch.h conv_template:> build/src.linux-x86_64-3.4/numpy/core/src/npysort/binsearch.c None - nothing done with h_files = ['build/src.linux-x86_64-3.4/numpy/core/src/common/npy_sort.h', 'build/src.linux-x86_64-3.4/numpy/core/src/common/npy_partition.h', 'build/src.linux-x86_64-3.4/numpy/core/src/common/npy_binsearch.h'] building extension "numpy.core._dummy" sources Generating build/src.linux-x86_64-3.4/numpy/core/include/numpy/config.h C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC compile options: '-Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/include/python3.4m -I/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/include/python3.4m -c' x86_64-linux-gnu-gcc: _configtest.c _configtest.c:1:20: fatal error: Python.h: No such file or directory #include <Python.h> ^ compilation terminated. failure. removing: _configtest.c _configtest.o Traceback (most recent call last): File "<string>", line 1, in <module> File "/tmp/pip-install-xmyxpz4n/numpy/setup.py", line 415, in <module> setup_package() File "/tmp/pip-install-xmyxpz4n/numpy/setup.py", line 407, in setup_package setup(**metadata) File "/tmp/pip-install-xmyxpz4n/numpy/numpy/distutils/core.py", line 171, in setup return old_setup(**new_attr) File "/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib/python3.4/site-packages/setuptools/__init__.py", line 145, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.4/distutils/core.py", line 148, in setup dist.run_commands() File "/usr/lib/python3.4/distutils/dist.py", line 955, in run_commands self.run_command(cmd) File "/usr/lib/python3.4/distutils/dist.py", line 974, in run_command cmd_obj.run() File "/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib/python3.4/site-packages/wheel/bdist_wheel.py", line 192, in run self.run_command('build') File "/usr/lib/python3.4/distutils/cmd.py", line 313, in run_command self.distribution.run_command(command) File "/usr/lib/python3.4/distutils/dist.py", line 974, in run_command cmd_obj.run() File "/tmp/pip-install-xmyxpz4n/numpy/numpy/distutils/command/build.py", line 47, in run old_build.run(self) File "/usr/lib/python3.4/distutils/command/build.py", line 126, in run self.run_command(cmd_name) File "/usr/lib/python3.4/distutils/cmd.py", line 313, in run_command self.distribution.run_command(command) File "/usr/lib/python3.4/distutils/dist.py", line 974, in run_command cmd_obj.run() File "/tmp/pip-install-xmyxpz4n/numpy/numpy/distutils/command/build_src.py", line 148, in run self.build_sources() File "/tmp/pip-install-xmyxpz4n/numpy/numpy/distutils/command/build_src.py", line 165, in build_sources self.build_extension_sources(ext) File "/tmp/pip-install-xmyxpz4n/numpy/numpy/distutils/command/build_src.py", line 322, in build_extension_sources sources = self.generate_sources(sources, ext) File "/tmp/pip-install-xmyxpz4n/numpy/numpy/distutils/command/build_src.py", line 375, in generate_sources source = func(extension, build_dir) File "numpy/core/setup.py", line 423, in generate_config_h moredefs, ignored = cocache.check_types(config_cmd, ext, build_dir) File "numpy/core/setup.py", line 47, in check_types out = check_types(*a, **kw) File "numpy/core/setup.py", line 281, in check_types "install {0}-dev|{0}-devel.".format(python)) SystemError: Cannot compile 'Python.h'. Perhaps you need to install python-dev|python-devel. ---------------------------------------- ERROR: Failed building wheel for numpy Running setup.py clean for numpy ERROR: Complete output from command /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/bin/python -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-install-xmyxpz4n/numpy/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all: ERROR: Running from numpy source directory. `setup.py clean` is not supported, use one of the following instead: - `git clean -xdf` (cleans all files) - `git clean -Xdf` (cleans all versioned files, doesn't touch files that aren't checked into the git repo) Add `--force` to your command to use it anyway if you must (unsupported). ---------------------------------------- ERROR: Failed cleaning build dir for numpy Failed to build numpy Installing collected packages: numpy Running setup.py install for numpy: started Running setup.py install for numpy: finished with status 'error' ERROR: Complete output from command /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/bin/python -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-install-xmyxpz4n/numpy/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-sgvjf4k0/install-record.txt --single-version-externally-managed --compile --install-headers /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/include/site/python3.4/numpy: ERROR: Running from numpy source directory. Note: if you need reliable uninstall behavior, then install with pip instead of using `setup.py install`: - `pip install .` (from a git repo or downloaded source release) - `pip install numpy` (last NumPy release on PyPi) blas_opt_info: blas_mkl_info: customize UnixCCompiler libraries mkl_rt not found in ['/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] NOT AVAILABLE blis_info: customize UnixCCompiler libraries blis not found in ['/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] NOT AVAILABLE openblas_info: customize UnixCCompiler customize UnixCCompiler libraries openblas not found in ['/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] NOT AVAILABLE atlas_3_10_blas_threads_info: Setting PTATLAS=ATLAS customize UnixCCompiler libraries tatlas not found in ['/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] NOT AVAILABLE atlas_3_10_blas_info: customize UnixCCompiler libraries satlas not found in ['/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] NOT AVAILABLE atlas_blas_threads_info: Setting PTATLAS=ATLAS customize UnixCCompiler libraries ptf77blas,ptcblas,atlas not found in ['/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] NOT AVAILABLE atlas_blas_info: customize UnixCCompiler libraries f77blas,cblas,atlas not found in ['/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] NOT AVAILABLE accelerate_info: NOT AVAILABLE /tmp/pip-install-xmyxpz4n/numpy/numpy/distutils/system_info.py:639: UserWarning: Atlas (http://math-atlas.sourceforge.net/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [atlas]) or by setting the ATLAS environment variable. self.calc_info() blas_info: customize UnixCCompiler customize UnixCCompiler C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC creating /tmp/tmp6j1sscua/tmp creating /tmp/tmp6j1sscua/tmp/tmp6j1sscua compile options: '-I/usr/local/include -I/usr/include -I/usr/include/suitesparse -c' x86_64-linux-gnu-gcc: /tmp/tmp6j1sscua/source.c x86_64-linux-gnu-gcc -pthread /tmp/tmp6j1sscua/tmp/tmp6j1sscua/source.o -lcblas -o /tmp/tmp6j1sscua/a.out /usr/bin/ld: cannot find -lcblas collect2: error: ld returned 1 exit status x86_64-linux-gnu-gcc -pthread /tmp/tmp6j1sscua/tmp/tmp6j1sscua/source.o -lblas -o /tmp/tmp6j1sscua/a.out customize UnixCCompiler FOUND: language = c include_dirs = ['/usr/local/include', '/usr/include', '/usr/include/suitesparse'] define_macros = [('HAVE_CBLAS', None)] library_dirs = ['/usr/lib'] libraries = ['blas', 'blas'] FOUND: define_macros = [('NO_ATLAS_INFO', 1), ('HAVE_CBLAS', None)] include_dirs = ['/usr/local/include', '/usr/include', '/usr/include/suitesparse'] language = c library_dirs = ['/usr/lib'] libraries = ['blas', 'blas'] /bin/sh: 1: svnversion: not found non-existing path in 'numpy/distutils': 'site.cfg' lapack_opt_info: lapack_mkl_info: customize UnixCCompiler libraries mkl_rt not found in ['/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] NOT AVAILABLE openblas_lapack_info: customize UnixCCompiler customize UnixCCompiler libraries openblas not found in ['/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] NOT AVAILABLE openblas_clapack_info: customize UnixCCompiler customize UnixCCompiler libraries openblas,lapack not found in ['/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] NOT AVAILABLE atlas_3_10_threads_info: Setting PTATLAS=ATLAS customize UnixCCompiler libraries lapack_atlas not found in /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib customize UnixCCompiler libraries tatlas,tatlas not found in /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib customize UnixCCompiler libraries lapack_atlas not found in /usr/local/lib customize UnixCCompiler libraries tatlas,tatlas not found in /usr/local/lib customize UnixCCompiler libraries lapack_atlas not found in /usr/lib customize UnixCCompiler libraries tatlas,tatlas not found in /usr/lib customize UnixCCompiler libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu customize UnixCCompiler libraries tatlas,tatlas not found in /usr/lib/x86_64-linux-gnu <class 'numpy.distutils.system_info.atlas_3_10_threads_info'> NOT AVAILABLE atlas_3_10_info: customize UnixCCompiler libraries lapack_atlas not found in /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib customize UnixCCompiler libraries satlas,satlas not found in /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib customize UnixCCompiler libraries lapack_atlas not found in /usr/local/lib customize UnixCCompiler libraries satlas,satlas not found in /usr/local/lib customize UnixCCompiler libraries lapack_atlas not found in /usr/lib customize UnixCCompiler libraries satlas,satlas not found in /usr/lib customize UnixCCompiler libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu customize UnixCCompiler libraries satlas,satlas not found in /usr/lib/x86_64-linux-gnu <class 'numpy.distutils.system_info.atlas_3_10_info'> NOT AVAILABLE atlas_threads_info: Setting PTATLAS=ATLAS customize UnixCCompiler libraries lapack_atlas not found in /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib customize UnixCCompiler libraries ptf77blas,ptcblas,atlas not found in /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib customize UnixCCompiler libraries lapack_atlas not found in /usr/local/lib customize UnixCCompiler libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib customize UnixCCompiler libraries lapack_atlas not found in /usr/lib customize UnixCCompiler libraries ptf77blas,ptcblas,atlas not found in /usr/lib customize UnixCCompiler libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu customize UnixCCompiler libraries ptf77blas,ptcblas,atlas not found in /usr/lib/x86_64-linux-gnu <class 'numpy.distutils.system_info.atlas_threads_info'> NOT AVAILABLE atlas_info: customize UnixCCompiler libraries lapack_atlas not found in /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib customize UnixCCompiler libraries f77blas,cblas,atlas not found in /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib customize UnixCCompiler libraries lapack_atlas not found in /usr/local/lib customize UnixCCompiler libraries f77blas,cblas,atlas not found in /usr/local/lib customize UnixCCompiler libraries lapack_atlas not found in /usr/lib customize UnixCCompiler libraries f77blas,cblas,atlas not found in /usr/lib customize UnixCCompiler libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu customize UnixCCompiler libraries f77blas,cblas,atlas not found in /usr/lib/x86_64-linux-gnu <class 'numpy.distutils.system_info.atlas_info'> NOT AVAILABLE /tmp/pip-install-xmyxpz4n/numpy/numpy/distutils/system_info.py:639: UserWarning: Atlas (http://math-atlas.sourceforge.net/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [atlas]) or by setting the ATLAS environment variable. self.calc_info() lapack_info: customize UnixCCompiler customize UnixCCompiler FOUND: library_dirs = ['/usr/lib'] language = f77 libraries = ['lapack', 'lapack'] FOUND: define_macros = [('NO_ATLAS_INFO', 1), ('HAVE_CBLAS', None)] library_dirs = ['/usr/lib'] language = c libraries = ['lapack', 'lapack', 'blas', 'blas'] include_dirs = ['/usr/local/include', '/usr/include', '/usr/include/suitesparse'] /usr/lib/python3.4/distutils/dist.py:260: UserWarning: Unknown distribution option: 'define_macros' warnings.warn(msg) running install running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building py_modules sources building library "npymath" sources get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor']' customize Gnu95FCompiler Found executable /usr/bin/gfortran customize Gnu95FCompiler customize Gnu95FCompiler using config C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC compile options: '-Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/include/python3.4m -I/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/include/python3.4m -c' x86_64-linux-gnu-gcc: _configtest.c x86_64-linux-gnu-gcc -pthread _configtest.o -o _configtest success! removing: _configtest.c _configtest.o _configtest.o.d _configtest C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC compile options: '-Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/include/python3.4m -I/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/include/python3.4m -c' x86_64-linux-gnu-gcc: _configtest.c _configtest.c:1:5: warning: conflicting types for built-in function ‘exp’ [enabled by default] int exp (void); ^ x86_64-linux-gnu-gcc -pthread _configtest.o -o _configtest _configtest.o: In function `main': /tmp/pip-install-xmyxpz4n/numpy/_configtest.c:6: undefined reference to `exp' collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o _configtest.o.d C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC compile options: '-Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/include/python3.4m -I/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/include/python3.4m -c' x86_64-linux-gnu-gcc: _configtest.c _configtest.c:1:5: warning: conflicting types for built-in function ‘exp’ [enabled by default] int exp (void); ^ x86_64-linux-gnu-gcc -pthread _configtest.o -lm -o _configtest success! removing: _configtest.c _configtest.o _configtest.o.d _configtest adding 'build/src.linux-x86_64-3.4/numpy/core/src/npymath' to include_dirs. None - nothing done with h_files = ['build/src.linux-x86_64-3.4/numpy/core/src/npymath/npy_math_internal.h'] building library "npysort" sources adding 'build/src.linux-x86_64-3.4/numpy/core/src/common' to include_dirs. None - nothing done with h_files = ['build/src.linux-x86_64-3.4/numpy/core/src/common/npy_sort.h', 'build/src.linux-x86_64-3.4/numpy/core/src/common/npy_partition.h', 'build/src.linux-x86_64-3.4/numpy/core/src/common/npy_binsearch.h'] building extension "numpy.core._dummy" sources Generating build/src.linux-x86_64-3.4/numpy/core/include/numpy/config.h C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC compile options: '-Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/include/python3.4m -I/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/include/python3.4m -c' x86_64-linux-gnu-gcc: _configtest.c _configtest.c:1:20: fatal error: Python.h: No such file or directory #include <Python.h> ^ compilation terminated. failure. removing: _configtest.c _configtest.o Traceback (most recent call last): File "<string>", line 1, in <module> File "/tmp/pip-install-xmyxpz4n/numpy/setup.py", line 415, in <module> setup_package() File "/tmp/pip-install-xmyxpz4n/numpy/setup.py", line 407, in setup_package setup(**metadata) File "/tmp/pip-install-xmyxpz4n/numpy/numpy/distutils/core.py", line 171, in setup return old_setup(**new_attr) File "/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib/python3.4/site-packages/setuptools/__init__.py", line 145, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.4/distutils/core.py", line 148, in setup dist.run_commands() File "/usr/lib/python3.4/distutils/dist.py", line 955, in run_commands self.run_command(cmd) File "/usr/lib/python3.4/distutils/dist.py", line 974, in run_command cmd_obj.run() File "/tmp/pip-install-xmyxpz4n/numpy/numpy/distutils/command/install.py", line 62, in run r = self.setuptools_run() File "/tmp/pip-install-xmyxpz4n/numpy/numpy/distutils/command/install.py", line 36, in setuptools_run return distutils_install.run(self) File "/usr/lib/python3.4/distutils/command/install.py", line 583, in run self.run_command('build') File "/usr/lib/python3.4/distutils/cmd.py", line 313, in run_command self.distribution.run_command(command) File "/usr/lib/python3.4/distutils/dist.py", line 974, in run_command cmd_obj.run() File "/tmp/pip-install-xmyxpz4n/numpy/numpy/distutils/command/build.py", line 47, in run old_build.run(self) File "/usr/lib/python3.4/distutils/command/build.py", line 126, in run self.run_command(cmd_name) File "/usr/lib/python3.4/distutils/cmd.py", line 313, in run_command self.distribution.run_command(command) File "/usr/lib/python3.4/distutils/dist.py", line 974, in run_command cmd_obj.run() File "/tmp/pip-install-xmyxpz4n/numpy/numpy/distutils/command/build_src.py", line 148, in run self.build_sources() File "/tmp/pip-install-xmyxpz4n/numpy/numpy/distutils/command/build_src.py", line 165, in build_sources self.build_extension_sources(ext) File "/tmp/pip-install-xmyxpz4n/numpy/numpy/distutils/command/build_src.py", line 322, in build_extension_sources sources = self.generate_sources(sources, ext) File "/tmp/pip-install-xmyxpz4n/numpy/numpy/distutils/command/build_src.py", line 375, in generate_sources source = func(extension, build_dir) File "numpy/core/setup.py", line 423, in generate_config_h moredefs, ignored = cocache.check_types(config_cmd, ext, build_dir) File "numpy/core/setup.py", line 47, in check_types out = check_types(*a, **kw) File "numpy/core/setup.py", line 281, in check_types "install {0}-dev|{0}-devel.".format(python)) SystemError: Cannot compile 'Python.h'. Perhaps you need to install python-dev|python-devel. ---------------------------------------- ERROR: Command "/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/bin/python -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-install-xmyxpz4n/numpy/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-sgvjf4k0/install-record.txt --single-version-externally-managed --compile --install-headers /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/include/site/python3.4/numpy" failed with error code 1 in /tmp/pip-install-xmyxpz4n/numpy/ Build step 'Execute shell' marked build as failure [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Skipped based on build state FAILURE Finished: FAILURE