Console Output

Started by upstream project "TransportMaps-private-master" build number 111
originally caused by:
 Started by BitBucket push by Daniele Bigoni
 Started by BitBucket push by Daniele Bigoni
Running as SYSTEM
[EnvInject] - Loading node environment variables.
Building remotely on reynolds-ubuntu14 in workspace /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv
[WS-CLEANUP] Deleting project workspace...
[WS-CLEANUP] Deferred wipeout is used...
No credentials specified
Cloning the remote Git repository
Cloning repository git@bitbucket.org:dabi86/transportmaps-private.git
 > git init /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv # timeout=10
Fetching upstream changes from git@bitbucket.org:dabi86/transportmaps-private.git
 > git --version # timeout=10
 > git fetch --tags --progress git@bitbucket.org:dabi86/transportmaps-private.git +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git config remote.origin.url git@bitbucket.org:dabi86/transportmaps-private.git # timeout=10
 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git config remote.origin.url git@bitbucket.org:dabi86/transportmaps-private.git # timeout=10
Fetching upstream changes from git@bitbucket.org:dabi86/transportmaps-private.git
 > git fetch --tags --progress git@bitbucket.org:dabi86/transportmaps-private.git +refs/heads/*:refs/remotes/origin/* # timeout=10
Checking out Revision 9574b9da2c23e7d99c522541ec6046368b04b795 (refs/remotes/origin/master)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 9574b9da2c23e7d99c522541ec6046368b04b795 # timeout=10
Commit message: "test-source.sh added PATH for Jenkins"
First time build. Skipping changelog.
[virtualenv] $ /bin/bash -xe /tmp/jenkins4619568358595425651.sh
+ bash -ex jenkins/test-source.sh
+ set -e
+ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/jenkins/.local/bin
++ pwd
+ ROOT=/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv
++ echo TransportMaps-private-master/COMPILER=clang,MACHINE=reynolds-ubuntu14,PYTHON_EXE=python2,VENV_SYS=virtualenv
++ cut -d / -f 1
+ TEST_NAME=TransportMaps-private-master
+ ENV_NAME=venv_TransportMaps-private-master_python2
+ VENV_OPTS=
+ [[ TransportMaps-private-master == *\m\p\i* ]]
+ TTYPE=serial
+ MPI=False
++ hostname
+ [[ reynolds-ubuntu14 == *\m\a\c\y\s* ]]
++ hostname
+ [[ reynolds-ubuntu14 == \m\a\c\y\s\-\S\i\e\r\r\a ]]
++ hostname
+ [[ reynolds-ubuntu14 == *\r\e\y\n\o\l\d\s* ]]
+ export PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/jenkins/.local/bin:/home/jenkins/bin
+ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/jenkins/.local/bin:/home/jenkins/bin
+ '[' virtualenv = virtualenv ']'
+ rm -rf venv_TransportMaps-private-master_python2
+ virtualenv --python=python2 venv_TransportMaps-private-master_python2
New python executable in /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/bin/python2
Also creating executable in /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/bin/python
Installing setuptools, pip, wheel...
done.
Running virtualenv with interpreter /usr/bin/python2
+ source venv_TransportMaps-private-master_python2/bin/activate
++ deactivate nondestructive
++ unset -f pydoc
++ '[' -z '' ']'
++ '[' -z '' ']'
++ '[' -n /bin/bash ']'
++ hash -r
++ '[' -z '' ']'
++ unset VIRTUAL_ENV
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/jenkins/.local/bin:/home/jenkins/bin
++ PATH=/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/jenkins/.local/bin:/home/jenkins/bin
++ export PATH
++ '[' -z '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ '[' x '!=' x ']'
+++ basename /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2
++ PS1='(venv_TransportMaps-private-master_python2) '
++ export PS1
++ alias pydoc
++ true
++ '[' -n /bin/bash ']'
++ hash -r
++ python -V
Python 2.7.6
+ PY_VERS=
+ CMD='import logging;'
+ CMD+='import TransportMaps as TM;'
+ CMD+='import warnings;'
+ CMD+='warnings.simplefilter('\''ignore'\'');'
+ CMD+='TM.tests.run_all(log_level=logging.ERROR,ttype='\''serial'\'')'
+ echo ''

+ echo 'TEST_NAME: TransportMaps-private-master'
TEST_NAME: TransportMaps-private-master
++ hostname
+ echo 'HOSTNAME: reynolds-ubuntu14'
HOSTNAME: reynolds-ubuntu14
+ echo 'PATH: /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/jenkins/.local/bin:/home/jenkins/bin'
PATH: /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/jenkins/.local/bin:/home/jenkins/bin
+ echo 'VENV_OPTS: '
VENV_OPTS: 
+ echo 'PY-VERS: '
PY-VERS: 
+ echo 'PY-CMD: import logging;import TransportMaps as TM;import warnings;warnings.simplefilter('\''ignore'\'');TM.tests.run_all(log_level=logging.ERROR,ttype='\''serial'\'')'
PY-CMD: import logging;import TransportMaps as TM;import warnings;warnings.simplefilter('ignore');TM.tests.run_all(log_level=logging.ERROR,ttype='serial')
+ echo ''

+ echo 'Upgrading pip'
Upgrading pip
+ python /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/bin/pip install --upgrade pip
DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7.
/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/local/lib/python2.7/site-packages/pip/_vendor/urllib3/util/ssl_.py:354: SNIMissingWarning: An HTTPS request has been made, but the SNI (Server Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
  SNIMissingWarning
/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/local/lib/python2.7/site-packages/pip/_vendor/urllib3/util/ssl_.py:150: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
  InsecurePlatformWarning
Requirement already up-to-date: pip in ./venv_TransportMaps-private-master_python2/lib/python2.7/site-packages (19.1.1)
+ echo 'Installing numpy'
Installing numpy
+ python /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/bin/pip install --upgrade numpy
DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7.
Collecting numpy
/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/local/lib/python2.7/site-packages/pip/_vendor/urllib3/util/ssl_.py:354: SNIMissingWarning: An HTTPS request has been made, but the SNI (Server Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
  SNIMissingWarning
/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/local/lib/python2.7/site-packages/pip/_vendor/urllib3/util/ssl_.py:150: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
  InsecurePlatformWarning
/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/local/lib/python2.7/site-packages/pip/_vendor/urllib3/util/ssl_.py:150: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
  InsecurePlatformWarning
  Downloading https://files.pythonhosted.org/packages/1f/c7/198496417c9c2f6226616cff7dedf2115a4f4d0276613bab842ec8ac1e23/numpy-1.16.4-cp27-cp27mu-manylinux1_x86_64.whl (17.0MB)
Installing collected packages: numpy
Successfully installed numpy-1.16.4
+ echo Packaging
Packaging
+ rm -fr tmp_sdist
+ mkdir tmp_sdist
+ python setup.py clean --all
running clean
'build/lib.linux-x86_64-2.7' does not exist -- can't clean it
'build/bdist.linux-x86_64' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
+ python setup.py sdist --dist-dir=tmp_sdist
running sdist
running egg_info
creating TransportMaps.egg-info
writing requirements to TransportMaps.egg-info/requires.txt
writing TransportMaps.egg-info/PKG-INFO
writing top-level names to TransportMaps.egg-info/top_level.txt
writing dependency_links to TransportMaps.egg-info/dependency_links.txt
writing manifest file 'TransportMaps.egg-info/SOURCES.txt'
reading manifest file 'TransportMaps.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
no previously-included directories found matching 'Examples/stable/?/data'
warning: no previously-included files found matching '.git'
warning: no previously-included files found matching '*.dill'
warning: no previously-included files found matching '*.hdf5'
warning: no previously-included files found matching '*.pkl'
warning: no previously-included files found matching '*.pkl.old'
warning: no previously-included files found matching '*~'
writing manifest file 'TransportMaps.egg-info/SOURCES.txt'
running check
creating TransportMaps-2.0b3
creating TransportMaps-2.0b3/Examples
creating TransportMaps-2.0b3/Examples/stable
creating TransportMaps-2.0b3/Examples/stable/BODmodel
creating TransportMaps-2.0b3/Examples/stable/CPP-Module
creating TransportMaps-2.0b3/Examples/stable/CPP-Module/xun
creating TransportMaps-2.0b3/Examples/stable/CPP-Module/xun/tests
creating TransportMaps-2.0b3/Examples/stable/StochasticVolatility
creating TransportMaps-2.0b3/Examples/stable/TestDistributions
creating TransportMaps-2.0b3/Examples/stable/cluster
creating TransportMaps-2.0b3/Examples/stable/cluster/voyager
creating TransportMaps-2.0b3/TransportMaps
creating TransportMaps-2.0b3/TransportMaps.egg-info
creating TransportMaps-2.0b3/TransportMaps/Algorithms
creating TransportMaps-2.0b3/TransportMaps/Algorithms/Adaptivity
creating TransportMaps-2.0b3/TransportMaps/Algorithms/SequentialInference
creating TransportMaps-2.0b3/TransportMaps/Algorithms/SparsityIdentification
creating TransportMaps-2.0b3/TransportMaps/CLI
creating TransportMaps-2.0b3/TransportMaps/Densities
creating TransportMaps-2.0b3/TransportMaps/Densities/Decomposable
creating TransportMaps-2.0b3/TransportMaps/Densities/Inference
creating TransportMaps-2.0b3/TransportMaps/Diagnostics
creating TransportMaps-2.0b3/TransportMaps/Distributions
creating TransportMaps-2.0b3/TransportMaps/Distributions/Decomposable
creating TransportMaps-2.0b3/TransportMaps/Distributions/Examples
creating TransportMaps-2.0b3/TransportMaps/Distributions/Examples/BiochemicalOxigenDemand
creating TransportMaps-2.0b3/TransportMaps/Distributions/Examples/InertialNavigationSystem
creating TransportMaps-2.0b3/TransportMaps/Distributions/Examples/LogGaussianCoxProcess
creating TransportMaps-2.0b3/TransportMaps/Distributions/Examples/RailwayVehicleDynamics
creating TransportMaps-2.0b3/TransportMaps/Distributions/Examples/RailwayVehicleDynamics/Coradia175
creating TransportMaps-2.0b3/TransportMaps/Distributions/Examples/ScalarLinearGaussMarkovProcess
creating TransportMaps-2.0b3/TransportMaps/Distributions/Examples/StochasticVolatility
creating TransportMaps-2.0b3/TransportMaps/Distributions/Inference
creating TransportMaps-2.0b3/TransportMaps/Functionals
creating TransportMaps-2.0b3/TransportMaps/Likelihoods
creating TransportMaps-2.0b3/TransportMaps/Maps
creating TransportMaps-2.0b3/TransportMaps/Maps/Decomposable
creating TransportMaps-2.0b3/TransportMaps/Optimization
creating TransportMaps-2.0b3/TransportMaps/RandomizedLinearAlgebra
creating TransportMaps-2.0b3/TransportMaps/Samplers
creating TransportMaps-2.0b3/TransportMaps/XML
creating TransportMaps-2.0b3/TransportMaps/XML/schema
creating TransportMaps-2.0b3/TransportMaps/tests
creating TransportMaps-2.0b3/TransportMaps/tests/xml
creating TransportMaps-2.0b3/TransportMaps/tests/xml/maps
creating TransportMaps-2.0b3/scripts
copying files to TransportMaps-2.0b3...
copying COPYING -> TransportMaps-2.0b3
copying COPYING.LESSER -> TransportMaps-2.0b3
copying MANIFEST.in -> TransportMaps-2.0b3
copying README.rst -> TransportMaps-2.0b3
copying requirements-H5PY.txt -> TransportMaps-2.0b3
copying requirements-MPI.txt -> TransportMaps-2.0b3
copying requirements-PLOT.txt -> TransportMaps-2.0b3
copying requirements-PYHMC.txt -> TransportMaps-2.0b3
copying requirements-SPHINX.txt -> TransportMaps-2.0b3
copying requirements.txt -> TransportMaps-2.0b3
copying setup.cfg -> TransportMaps-2.0b3
copying setup.py -> TransportMaps-2.0b3
copying Examples/stable/BODmodel/DataGeneration.py -> TransportMaps-2.0b3/Examples/stable/BODmodel
copying Examples/stable/CPP-Module/KLdivergence-InverseMap-InverseConstruction.py -> TransportMaps-2.0b3/Examples/stable/CPP-Module
copying Examples/stable/CPP-Module/xun/setup.py -> TransportMaps-2.0b3/Examples/stable/CPP-Module/xun
copying Examples/stable/CPP-Module/xun/tests/test.py -> TransportMaps-2.0b3/Examples/stable/CPP-Module/xun/tests
copying Examples/stable/StochasticVolatility/DataGeneration.py -> TransportMaps-2.0b3/Examples/stable/StochasticVolatility
copying Examples/stable/StochasticVolatility/PlotExchanges.py -> TransportMaps-2.0b3/Examples/stable/StochasticVolatility
copying Examples/stable/StochasticVolatility/mcmc.py -> TransportMaps-2.0b3/Examples/stable/StochasticVolatility
copying Examples/stable/StochasticVolatility/postprocess-plotting.py -> TransportMaps-2.0b3/Examples/stable/StochasticVolatility
copying Examples/stable/TestDistributions/KLdivergence-InverseMap-DirectConstruction-ByStep.py -> TransportMaps-2.0b3/Examples/stable/TestDistributions
copying Examples/stable/TestDistributions/KLdivergence-InverseMap-DirectConstruction.py -> TransportMaps-2.0b3/Examples/stable/TestDistributions
copying Examples/stable/TestDistributions/KLdivergence-InverseMap-InverseConstruction.py -> TransportMaps-2.0b3/Examples/stable/TestDistributions
copying Examples/stable/TestDistributions/KLdivergence.py -> TransportMaps-2.0b3/Examples/stable/TestDistributions
copying Examples/stable/TestDistributions/Regression.py -> TransportMaps-2.0b3/Examples/stable/TestDistributions
copying Examples/stable/cluster/voyager/run_unit_tests.py -> TransportMaps-2.0b3/Examples/stable/cluster/voyager
copying TransportMaps/Defaults.py -> TransportMaps-2.0b3/TransportMaps
copying TransportMaps/External.py -> TransportMaps-2.0b3/TransportMaps
copying TransportMaps/FiniteDifference.py -> TransportMaps-2.0b3/TransportMaps
copying TransportMaps/Misc.py -> TransportMaps-2.0b3/TransportMaps
copying TransportMaps/ObjectBase.py -> TransportMaps-2.0b3/TransportMaps
copying TransportMaps/Routines.py -> TransportMaps-2.0b3/TransportMaps
copying TransportMaps/__init__.py -> TransportMaps-2.0b3/TransportMaps
copying TransportMaps/_version.py -> TransportMaps-2.0b3/TransportMaps
copying TransportMaps.egg-info/PKG-INFO -> TransportMaps-2.0b3/TransportMaps.egg-info
copying TransportMaps.egg-info/SOURCES.txt -> TransportMaps-2.0b3/TransportMaps.egg-info
copying TransportMaps.egg-info/dependency_links.txt -> TransportMaps-2.0b3/TransportMaps.egg-info
copying TransportMaps.egg-info/not-zip-safe -> TransportMaps-2.0b3/TransportMaps.egg-info
copying TransportMaps.egg-info/requires.txt -> TransportMaps-2.0b3/TransportMaps.egg-info
copying TransportMaps.egg-info/top_level.txt -> TransportMaps-2.0b3/TransportMaps.egg-info
copying TransportMaps/Algorithms/__init__.py -> TransportMaps-2.0b3/TransportMaps/Algorithms
copying TransportMaps/Algorithms/Adaptivity/AdaptivityBase.py -> TransportMaps-2.0b3/TransportMaps/Algorithms/Adaptivity
copying TransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py -> TransportMaps-2.0b3/TransportMaps/Algorithms/Adaptivity
copying TransportMaps/Algorithms/Adaptivity/RegressionAdaptivity.py -> TransportMaps-2.0b3/TransportMaps/Algorithms/Adaptivity
copying TransportMaps/Algorithms/Adaptivity/__init__.py -> TransportMaps-2.0b3/TransportMaps/Algorithms/Adaptivity
copying TransportMaps/Algorithms/SequentialInference/LinearSequentialInference.py -> TransportMaps-2.0b3/TransportMaps/Algorithms/SequentialInference
copying TransportMaps/Algorithms/SequentialInference/NonLinearSequentialInference.py -> TransportMaps-2.0b3/TransportMaps/Algorithms/SequentialInference
copying TransportMaps/Algorithms/SequentialInference/SequentialInferenceBase.py -> TransportMaps-2.0b3/TransportMaps/Algorithms/SequentialInference
copying TransportMaps/Algorithms/SequentialInference/__init__.py -> TransportMaps-2.0b3/TransportMaps/Algorithms/SequentialInference
copying TransportMaps/Algorithms/SparsityIdentification/GeneralizedPrecision.py -> TransportMaps-2.0b3/TransportMaps/Algorithms/SparsityIdentification
copying TransportMaps/Algorithms/SparsityIdentification/NodeOrdering.py -> TransportMaps-2.0b3/TransportMaps/Algorithms/SparsityIdentification
copying TransportMaps/Algorithms/SparsityIdentification/RegularizedMap.py -> TransportMaps-2.0b3/TransportMaps/Algorithms/SparsityIdentification
copying TransportMaps/Algorithms/SparsityIdentification/SparsityIdentificationNonGaussian.py -> TransportMaps-2.0b3/TransportMaps/Algorithms/SparsityIdentification
copying TransportMaps/Algorithms/SparsityIdentification/__init__.py -> TransportMaps-2.0b3/TransportMaps/Algorithms/SparsityIdentification
copying TransportMaps/CLI/AdaptivityPostprocessBase.py -> TransportMaps-2.0b3/TransportMaps/CLI
copying TransportMaps/CLI/AvailableOptions.py -> TransportMaps-2.0b3/TransportMaps/CLI
copying TransportMaps/CLI/PostprocessBase.py -> TransportMaps-2.0b3/TransportMaps/CLI
copying TransportMaps/CLI/ScriptBase.py -> TransportMaps-2.0b3/TransportMaps/CLI
copying TransportMaps/CLI/SequentialPostprocessBase.py -> TransportMaps-2.0b3/TransportMaps/CLI
copying TransportMaps/CLI/__init__.py -> TransportMaps-2.0b3/TransportMaps/CLI
copying TransportMaps/Densities/Densities.py -> TransportMaps-2.0b3/TransportMaps/Densities
copying TransportMaps/Densities/__init__.py -> TransportMaps-2.0b3/TransportMaps/Densities
copying TransportMaps/Densities/Decomposable/SequentialInferenceDensities.py -> TransportMaps-2.0b3/TransportMaps/Densities/Decomposable
copying TransportMaps/Densities/Decomposable/__init__.py -> TransportMaps-2.0b3/TransportMaps/Densities/Decomposable
copying TransportMaps/Densities/Inference/InferenceBase.py -> TransportMaps-2.0b3/TransportMaps/Densities/Inference
copying TransportMaps/Densities/Inference/__init__.py -> TransportMaps-2.0b3/TransportMaps/Densities/Inference
copying TransportMaps/Diagnostics/Plotting.py -> TransportMaps-2.0b3/TransportMaps/Diagnostics
copying TransportMaps/Diagnostics/Routines.py -> TransportMaps-2.0b3/TransportMaps/Diagnostics
copying TransportMaps/Diagnostics/Validators.py -> TransportMaps-2.0b3/TransportMaps/Diagnostics
copying TransportMaps/Diagnostics/__init__.py -> TransportMaps-2.0b3/TransportMaps/Diagnostics
copying TransportMaps/Distributions/ConditionalDistributions.py -> TransportMaps-2.0b3/TransportMaps/Distributions
copying TransportMaps/Distributions/DistributionBase.py -> TransportMaps-2.0b3/TransportMaps/Distributions
copying TransportMaps/Distributions/FrozenDistributions.py -> TransportMaps-2.0b3/TransportMaps/Distributions
copying TransportMaps/Distributions/ParametricDistributionBase.py -> TransportMaps-2.0b3/TransportMaps/Distributions
copying TransportMaps/Distributions/TransportMapDistributions.py -> TransportMaps-2.0b3/TransportMaps/Distributions
copying TransportMaps/Distributions/__init__.py -> TransportMaps-2.0b3/TransportMaps/Distributions
copying TransportMaps/Distributions/Decomposable/LinearGaussianSequentialInferenceDistributions.py -> TransportMaps-2.0b3/TransportMaps/Distributions/Decomposable
copying TransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.py -> TransportMaps-2.0b3/TransportMaps/Distributions/Decomposable
copying TransportMaps/Distributions/Decomposable/__init__.py -> TransportMaps-2.0b3/TransportMaps/Distributions/Decomposable
copying TransportMaps/Distributions/Examples/SimpleDistributions.py -> TransportMaps-2.0b3/TransportMaps/Distributions/Examples
copying TransportMaps/Distributions/Examples/__init__.py -> TransportMaps-2.0b3/TransportMaps/Distributions/Examples
copying TransportMaps/Distributions/Examples/BiochemicalOxigenDemand/BODDistributions.py -> TransportMaps-2.0b3/TransportMaps/Distributions/Examples/BiochemicalOxigenDemand
copying TransportMaps/Distributions/Examples/BiochemicalOxigenDemand/__init__.py -> TransportMaps-2.0b3/TransportMaps/Distributions/Examples/BiochemicalOxigenDemand
copying TransportMaps/Distributions/Examples/InertialNavigationSystem/INSDistributions.py -> TransportMaps-2.0b3/TransportMaps/Distributions/Examples/InertialNavigationSystem
copying TransportMaps/Distributions/Examples/InertialNavigationSystem/__init__.py -> TransportMaps-2.0b3/TransportMaps/Distributions/Examples/InertialNavigationSystem
copying TransportMaps/Distributions/Examples/LogGaussianCoxProcess/__init__.py -> TransportMaps-2.0b3/TransportMaps/Distributions/Examples/LogGaussianCoxProcess
copying TransportMaps/Distributions/Examples/RailwayVehicleDynamics/__init__.py -> TransportMaps-2.0b3/TransportMaps/Distributions/Examples/RailwayVehicleDynamics
copying TransportMaps/Distributions/Examples/RailwayVehicleDynamics/Coradia175/Coradia175VehicleParametersEstimation.py -> TransportMaps-2.0b3/TransportMaps/Distributions/Examples/RailwayVehicleDynamics/Coradia175
copying TransportMaps/Distributions/Examples/RailwayVehicleDynamics/Coradia175/Coradia175VehicleStateSpace.py -> TransportMaps-2.0b3/TransportMaps/Distributions/Examples/RailwayVehicleDynamics/Coradia175
copying TransportMaps/Distributions/Examples/RailwayVehicleDynamics/Coradia175/__init__.py -> TransportMaps-2.0b3/TransportMaps/Distributions/Examples/RailwayVehicleDynamics/Coradia175
copying TransportMaps/Distributions/Examples/ScalarLinearGaussMarkovProcess/Distributions.py -> TransportMaps-2.0b3/TransportMaps/Distributions/Examples/ScalarLinearGaussMarkovProcess
copying TransportMaps/Distributions/Examples/ScalarLinearGaussMarkovProcess/__init__.py -> TransportMaps-2.0b3/TransportMaps/Distributions/Examples/ScalarLinearGaussMarkovProcess
copying TransportMaps/Distributions/Examples/StochasticVolatility/StocVolHyperDistributions.py -> TransportMaps-2.0b3/TransportMaps/Distributions/Examples/StochasticVolatility
copying TransportMaps/Distributions/Examples/StochasticVolatility/__init__.py -> TransportMaps-2.0b3/TransportMaps/Distributions/Examples/StochasticVolatility
copying TransportMaps/Distributions/Inference/InferenceBase.py -> TransportMaps-2.0b3/TransportMaps/Distributions/Inference
copying TransportMaps/Distributions/Inference/__init__.py -> TransportMaps-2.0b3/TransportMaps/Distributions/Inference
copying TransportMaps/Functionals/AlgebraicLinearSpanApproximations.py -> TransportMaps-2.0b3/TransportMaps/Functionals
copying TransportMaps/Functionals/FrozenMonotonicFunctions.py -> TransportMaps-2.0b3/TransportMaps/Functionals
copying TransportMaps/Functionals/FunctionBase.py -> TransportMaps-2.0b3/TransportMaps/Functionals
copying TransportMaps/Functionals/LinearSpanApproximationBase.py -> TransportMaps-2.0b3/TransportMaps/Functionals
copying TransportMaps/Functionals/MonotonicFunctionApproximations.py -> TransportMaps-2.0b3/TransportMaps/Functionals
copying TransportMaps/Functionals/ParametricFunctionApproximationBase.py -> TransportMaps-2.0b3/TransportMaps/Functionals
copying TransportMaps/Functionals/ProductDistributionParametricPullbackComponentFunctionBase.py -> TransportMaps-2.0b3/TransportMaps/Functionals
copying TransportMaps/Functionals/__init__.py -> TransportMaps-2.0b3/TransportMaps/Functionals
copying TransportMaps/Likelihoods/LikelihoodBase.py -> TransportMaps-2.0b3/TransportMaps/Likelihoods
copying TransportMaps/Likelihoods/__init__.py -> TransportMaps-2.0b3/TransportMaps/Likelihoods
copying TransportMaps/Maps/FrozenTriangularTransportMaps.py -> TransportMaps-2.0b3/TransportMaps/Maps
copying TransportMaps/Maps/FullTransportMaps.py -> TransportMaps-2.0b3/TransportMaps/Maps
copying TransportMaps/Maps/MapBase.py -> TransportMaps-2.0b3/TransportMaps/Maps
copying TransportMaps/Maps/SimpleTransportMaps.py -> TransportMaps-2.0b3/TransportMaps/Maps
copying TransportMaps/Maps/TransportMapBase.py -> TransportMaps-2.0b3/TransportMaps/Maps
copying TransportMaps/Maps/TriangularTransportMapBase.py -> TransportMaps-2.0b3/TransportMaps/Maps
copying TransportMaps/Maps/TriangularTransportMaps.py -> TransportMaps-2.0b3/TransportMaps/Maps
copying TransportMaps/Maps/__init__.py -> TransportMaps-2.0b3/TransportMaps/Maps
copying TransportMaps/Maps/Decomposable/SequentialInferenceMaps.py -> TransportMaps-2.0b3/TransportMaps/Maps/Decomposable
copying TransportMaps/Maps/Decomposable/__init__.py -> TransportMaps-2.0b3/TransportMaps/Maps/Decomposable
copying TransportMaps/Optimization/Optimizers.py -> TransportMaps-2.0b3/TransportMaps/Optimization
copying TransportMaps/Optimization/__init__.py -> TransportMaps-2.0b3/TransportMaps/Optimization
copying TransportMaps/RandomizedLinearAlgebra/RandomizedLinearAlgebra.py -> TransportMaps-2.0b3/TransportMaps/RandomizedLinearAlgebra
copying TransportMaps/RandomizedLinearAlgebra/__init__.py -> TransportMaps-2.0b3/TransportMaps/RandomizedLinearAlgebra
copying TransportMaps/Samplers/IndependentSamplers.py -> TransportMaps-2.0b3/TransportMaps/Samplers
copying TransportMaps/Samplers/MarkovChainSamplers.py -> TransportMaps-2.0b3/TransportMaps/Samplers
copying TransportMaps/Samplers/Routines.py -> TransportMaps-2.0b3/TransportMaps/Samplers
copying TransportMaps/Samplers/SamplerBase.py -> TransportMaps-2.0b3/TransportMaps/Samplers
copying TransportMaps/Samplers/__init__.py -> TransportMaps-2.0b3/TransportMaps/Samplers
copying TransportMaps/XML/Parser.py -> TransportMaps-2.0b3/TransportMaps/XML
copying TransportMaps/XML/__init__.py -> TransportMaps-2.0b3/TransportMaps/XML
copying TransportMaps/XML/schema/map.xsd -> TransportMaps-2.0b3/TransportMaps/XML/schema
copying TransportMaps/tests/TestFunctions.py -> TransportMaps-2.0b3/TransportMaps/tests
copying TransportMaps/tests/__init__.py -> TransportMaps-2.0b3/TransportMaps/tests
copying TransportMaps/tests/test_L2_minimization.py -> TransportMaps-2.0b3/TransportMaps/tests
copying TransportMaps/tests/test_L2_misfit.py -> TransportMaps-2.0b3/TransportMaps/tests
copying TransportMaps/tests/test_all.py -> TransportMaps-2.0b3/TransportMaps/tests
copying TransportMaps/tests/test_distributions.py -> TransportMaps-2.0b3/TransportMaps/tests
copying TransportMaps/tests/test_functions.py -> TransportMaps-2.0b3/TransportMaps/tests
copying TransportMaps/tests/test_kl_divergence.py -> TransportMaps-2.0b3/TransportMaps/tests
copying TransportMaps/tests/test_kl_minimization.py -> TransportMaps-2.0b3/TransportMaps/tests
copying TransportMaps/tests/test_laplace.py -> TransportMaps-2.0b3/TransportMaps/tests
copying TransportMaps/tests/test_rla.py -> TransportMaps-2.0b3/TransportMaps/tests
copying TransportMaps/tests/test_scripts.py -> TransportMaps-2.0b3/TransportMaps/tests
copying TransportMaps/tests/test_sequential_inference.py -> TransportMaps-2.0b3/TransportMaps/tests
copying TransportMaps/tests/test_transportmap_distributions.py -> TransportMaps-2.0b3/TransportMaps/tests
copying TransportMaps/tests/test_transportmap_distributions_sampling.py -> TransportMaps-2.0b3/TransportMaps/tests
copying TransportMaps/tests/test_transportmaps.py -> TransportMaps-2.0b3/TransportMaps/tests
copying TransportMaps/tests/test_xml.py -> TransportMaps-2.0b3/TransportMaps/tests
copying TransportMaps/tests/xml/maps/FullOrdIntExpLinearMap_5d.xml -> TransportMaps-2.0b3/TransportMaps/tests/xml/maps
copying TransportMaps/tests/xml/maps/FullOrdIntExpNonLinearHeadMap_5d.xml -> TransportMaps-2.0b3/TransportMaps/tests/xml/maps
copying TransportMaps/tests/xml/maps/FullOrdIntExpNonLinearMap_5d.xml -> TransportMaps-2.0b3/TransportMaps/tests/xml/maps
copying TransportMaps/tests/xml/maps/FullOrdIntExpTriDiagonalMap_5d.xml -> TransportMaps-2.0b3/TransportMaps/tests/xml/maps
copying TransportMaps/tests/xml/maps/FullOrdMonotLinearSpanLinearMap_5d.xml -> TransportMaps-2.0b3/TransportMaps/tests/xml/maps
copying TransportMaps/tests/xml/maps/MultiIdxMonotLinearSpanLinearMap_5d.xml -> TransportMaps-2.0b3/TransportMaps/tests/xml/maps
copying TransportMaps/tests/xml/maps/TotalOrdIntExpDiagonalMap_5d.xml -> TransportMaps-2.0b3/TransportMaps/tests/xml/maps
copying TransportMaps/tests/xml/maps/TotalOrdIntExpLinearMap_5d.xml -> TransportMaps-2.0b3/TransportMaps/tests/xml/maps
copying TransportMaps/tests/xml/maps/TotalOrdIntExpNonLinearHeadMap_5d.xml -> TransportMaps-2.0b3/TransportMaps/tests/xml/maps
copying TransportMaps/tests/xml/maps/TotalOrdIntExpNonLinearMap_5d.xml -> TransportMaps-2.0b3/TransportMaps/tests/xml/maps
copying TransportMaps/tests/xml/maps/TotalOrdIntExpNonLinearRBFMap_5d.xml -> TransportMaps-2.0b3/TransportMaps/tests/xml/maps
copying TransportMaps/tests/xml/maps/TotalOrdIntExpTriDiagonalMap_5d.xml -> TransportMaps-2.0b3/TransportMaps/tests/xml/maps
copying TransportMaps/tests/xml/maps/TotalOrdIntSqLinearMap_5d.xml -> TransportMaps-2.0b3/TransportMaps/tests/xml/maps
copying TransportMaps/tests/xml/maps/TotalOrdIntSqNonLinearHeadMap_5d.xml -> TransportMaps-2.0b3/TransportMaps/tests/xml/maps
copying TransportMaps/tests/xml/maps/TotalOrdMonotLinearSpanLinearMap_5d.xml -> TransportMaps-2.0b3/TransportMaps/tests/xml/maps
copying scripts/tmap-adaptivity-postprocess -> TransportMaps-2.0b3/scripts
copying scripts/tmap-laplace -> TransportMaps-2.0b3/scripts
copying scripts/tmap-load-dill -> TransportMaps-2.0b3/scripts
copying scripts/tmap-max-likelihood -> TransportMaps-2.0b3/scripts
copying scripts/tmap-postprocess -> TransportMaps-2.0b3/scripts
copying scripts/tmap-sequential-postprocess -> TransportMaps-2.0b3/scripts
copying scripts/tmap-sequential-tm -> TransportMaps-2.0b3/scripts
copying scripts/tmap-tm -> TransportMaps-2.0b3/scripts
Writing TransportMaps-2.0b3/setup.cfg
Creating tar archive
removing 'TransportMaps-2.0b3' (and everything under it)
+ cd tmp_sdist
+ echo Installing
Installing
++ ls
+ INSTALLER=TransportMaps-2.0b3.tar.gz
+ PIP_FLAGS=--no-cache-dir
+ CC=clang
+ MPI=False
+ H5PY=True
+ python /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/bin/pip install --upgrade TransportMaps-2.0b3.tar.gz
DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7.
Processing ./TransportMaps-2.0b3.tar.gz
Requirement already satisfied, skipping upgrade: numpy>=1.14 in /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/lib/python2.7/site-packages (from TransportMaps==2.0b3) (1.16.4)
Collecting orthpol_light>=1.0.1 (from TransportMaps==2.0b3)
/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/local/lib/python2.7/site-packages/pip/_vendor/urllib3/util/ssl_.py:354: SNIMissingWarning: An HTTPS request has been made, but the SNI (Server Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
  SNIMissingWarning
/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/local/lib/python2.7/site-packages/pip/_vendor/urllib3/util/ssl_.py:150: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
  InsecurePlatformWarning
/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/local/lib/python2.7/site-packages/pip/_vendor/urllib3/util/ssl_.py:150: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
  InsecurePlatformWarning
  Downloading https://files.pythonhosted.org/packages/0c/93/7a8d45bd2865757014c9910ca0a05962c879a2ca3a33498e347bda341df2/orthpol_light-1.0.1.tar.gz
Collecting scipy (from TransportMaps==2.0b3)
  Downloading https://files.pythonhosted.org/packages/1d/f6/7c16d60aeb3694e5611976cb4f1eaf1c6b7f1e7c55771d691013405a02ea/scipy-1.2.2-cp27-cp27mu-manylinux1_x86_64.whl (24.8MB)
Collecting SpectralToolbox>=1.0.7 (from TransportMaps==2.0b3)
  Downloading https://files.pythonhosted.org/packages/92/35/13b7eb420c245721d10b4ea7b7f7f8bbfe85a46008d0d8d6dec4aed0f552/SpectralToolbox-1.0.12.tar.gz (697kB)
Collecting dill (from TransportMaps==2.0b3)
  Downloading https://files.pythonhosted.org/packages/fe/42/bfe2e0857bc284cbe6a011d93f2a9ad58a22cb894461b199ae72cfef0f29/dill-0.2.9.tar.gz (150kB)
Collecting scikit-sparse (from TransportMaps==2.0b3)
  Downloading https://files.pythonhosted.org/packages/af/14/08a13ccf3b4e0300cf47641f959b8062376a73efc4c8265f2b6f6eae04fc/scikit-sparse-0.4.4.tar.gz (385kB)
Collecting mpi4py (from TransportMaps==2.0b3)
  Downloading https://files.pythonhosted.org/packages/04/f5/a615603ce4ab7f40b65dba63759455e3da610d9a155d4d4cece1d8fd6706/mpi4py-3.0.2.tar.gz (1.4MB)
Collecting h5py (from TransportMaps==2.0b3)
  Downloading https://files.pythonhosted.org/packages/53/08/27e4e9a369321862ffdce80ff1770553e9daec65d98befb2e14e7478b698/h5py-2.9.0-cp27-cp27mu-manylinux1_x86_64.whl (2.8MB)
Collecting six (from h5py->TransportMaps==2.0b3)
  Downloading https://files.pythonhosted.org/packages/73/fb/00a976f728d0d1fecfe898238ce23f502a721c0ac0ecfedb80e0d88c64e9/six-1.12.0-py2.py3-none-any.whl
Building wheels for collected packages: TransportMaps, orthpol-light, SpectralToolbox, dill, scikit-sparse, mpi4py
  Building wheel for TransportMaps (setup.py): started
  Building wheel for TransportMaps (setup.py): finished with status 'done'
  Stored in directory: /home/jenkins/.cache/pip/wheels/0b/c5/b5/e1efca364f31aac7ab2ee927d66735dcd10db40456ad88235f
  Building wheel for orthpol-light (setup.py): started
  Building wheel for orthpol-light (setup.py): finished with status 'error'
  ERROR: Complete output from command /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/bin/python -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-install-XmiENy/orthpol-light/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-zfNOh8 --python-tag cp27:
  ERROR: running bdist_wheel
  running build
  running config_cc
  unifing config_cc, config, build_clib, build_ext, build commands --compiler options
  running config_fc
  unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
  running build_src
  build_src
  building extension "orthpol_light" sources
  f2py options: []
    adding 'build/src.linux-x86_64-2.7/build/src.linux-x86_64-2.7/fortranobject.c' to sources.
    adding 'build/src.linux-x86_64-2.7/build/src.linux-x86_64-2.7' to include_dirs.
    adding 'build/src.linux-x86_64-2.7/orthpol_light-f2pywrappers.f' to sources.
  build_src: building npy-pkg config files
  running build_ext
  customize UnixCCompiler
  customize UnixCCompiler using build_ext
  get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor']'
  customize Gnu95FCompiler
  Found executable /usr/bin/gfortran
  customize Gnu95FCompiler
  customize Gnu95FCompiler using build_ext
  building 'orthpol_light' extension
  compiling C sources
  C compiler: clang -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC
  
  creating build/temp.linux-x86_64-2.7/build
  creating build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7
  creating build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/build
  creating build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/build/src.linux-x86_64-2.7
  compile options: '-Ibuild/src.linux-x86_64-2.7/build/src.linux-x86_64-2.7 -I/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/local/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c'
  clang: build/src.linux-x86_64-2.7/orthpol_lightmodule.c
  clang: build/src.linux-x86_64-2.7/build/src.linux-x86_64-2.7/fortranobject.c
  error: Command "clang -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -Ibuild/src.linux-x86_64-2.7/build/src.linux-x86_64-2.7 -I/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/local/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c build/src.linux-x86_64-2.7/build/src.linux-x86_64-2.7/fortranobject.c -o build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/build/src.linux-x86_64-2.7/fortranobject.o -MMD -MF build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/build/src.linux-x86_64-2.7/fortranobject.o.d" failed with exit status 127
  ----------------------------------------
  ERROR: Failed building wheel for orthpol-light
  Running setup.py clean for orthpol-light
  Building wheel for SpectralToolbox (setup.py): started
  Building wheel for SpectralToolbox (setup.py): finished with status 'error'
  ERROR: Complete output from command /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/bin/python -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-install-XmiENy/SpectralToolbox/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-rUmILC --python-tag cp27:
  ERROR: running bdist_wheel
  running build
  running build_py
  creating build
  creating build/lib.linux-x86_64-2.7
  creating build/lib.linux-x86_64-2.7/SpectralToolbox
  copying SpectralToolbox/Stroud.py -> build/lib.linux-x86_64-2.7/SpectralToolbox
  copying SpectralToolbox/HeterogeneousSparseGrids.py -> build/lib.linux-x86_64-2.7/SpectralToolbox
  copying SpectralToolbox/SparseGrids.py -> build/lib.linux-x86_64-2.7/SpectralToolbox
  copying SpectralToolbox/SpectralND.py -> build/lib.linux-x86_64-2.7/SpectralToolbox
  copying SpectralToolbox/Misc.py -> build/lib.linux-x86_64-2.7/SpectralToolbox
  copying SpectralToolbox/_version.py -> build/lib.linux-x86_64-2.7/SpectralToolbox
  copying SpectralToolbox/__init__.py -> build/lib.linux-x86_64-2.7/SpectralToolbox
  creating build/lib.linux-x86_64-2.7/SpectralToolbox/Spectral1D
  copying SpectralToolbox/Spectral1D/Constants.py -> build/lib.linux-x86_64-2.7/SpectralToolbox/Spectral1D
  copying SpectralToolbox/Spectral1D/LagrangePolynomials.py -> build/lib.linux-x86_64-2.7/SpectralToolbox/Spectral1D
  copying SpectralToolbox/Spectral1D/OldInterface.py -> build/lib.linux-x86_64-2.7/SpectralToolbox/Spectral1D
  copying SpectralToolbox/Spectral1D/OrthogonalPolynomials.py -> build/lib.linux-x86_64-2.7/SpectralToolbox/Spectral1D
  copying SpectralToolbox/Spectral1D/auxiliary.py -> build/lib.linux-x86_64-2.7/SpectralToolbox/Spectral1D
  copying SpectralToolbox/Spectral1D/OrthogonalFunctions.py -> build/lib.linux-x86_64-2.7/SpectralToolbox/Spectral1D
  copying SpectralToolbox/Spectral1D/NonOrthogonalBasis.py -> build/lib.linux-x86_64-2.7/SpectralToolbox/Spectral1D
  copying SpectralToolbox/Spectral1D/LinearInterpolation.py -> build/lib.linux-x86_64-2.7/SpectralToolbox/Spectral1D
  copying SpectralToolbox/Spectral1D/__init__.py -> build/lib.linux-x86_64-2.7/SpectralToolbox/Spectral1D
  copying SpectralToolbox/Spectral1D/AbstractClasses.py -> build/lib.linux-x86_64-2.7/SpectralToolbox/Spectral1D
  copying SpectralToolbox/Spectral1D/AlgebraicPolynomials.py -> build/lib.linux-x86_64-2.7/SpectralToolbox/Spectral1D
  creating build/lib.linux-x86_64-2.7/SpectralToolbox/tests
  copying SpectralToolbox/tests/test_all.py -> build/lib.linux-x86_64-2.7/SpectralToolbox/tests
  copying SpectralToolbox/tests/plot_integrated_squared.py -> build/lib.linux-x86_64-2.7/SpectralToolbox/tests
  copying SpectralToolbox/tests/test_squared_orth.py -> build/lib.linux-x86_64-2.7/SpectralToolbox/tests
  copying SpectralToolbox/tests/__init__.py -> build/lib.linux-x86_64-2.7/SpectralToolbox/tests
  copying SpectralToolbox/tests/test_spectral1d.py -> build/lib.linux-x86_64-2.7/SpectralToolbox/tests
  running egg_info
  writing requirements to SpectralToolbox.egg-info/requires.txt
  writing SpectralToolbox.egg-info/PKG-INFO
  writing top-level names to SpectralToolbox.egg-info/top_level.txt
  writing dependency_links to SpectralToolbox.egg-info/dependency_links.txt
  reading manifest file 'SpectralToolbox.egg-info/SOURCES.txt'
  reading manifest template 'MANIFEST.in'
  warning: no previously-included files found matching '.hgignore'
  writing manifest file 'SpectralToolbox.egg-info/SOURCES.txt'
  creating build/lib.linux-x86_64-2.7/SpectralToolbox/Spectral1D/XML
  creating build/lib.linux-x86_64-2.7/SpectralToolbox/Spectral1D/XML/schema
  copying SpectralToolbox/Spectral1D/XML/schema/basis.xsd -> build/lib.linux-x86_64-2.7/SpectralToolbox/Spectral1D/XML/schema
  running build_ext
  building 'polymod' extension
  creating build/temp.linux-x86_64-2.7
  creating build/temp.linux-x86_64-2.7/src
  clang -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -I/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/local/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c src/tools.cpp -o build/temp.linux-x86_64-2.7/src/tools.o -O3
  unable to execute 'clang': No such file or directory
  error: command 'clang' failed with exit status 1
  ----------------------------------------
  ERROR: Failed building wheel for SpectralToolbox
  Running setup.py clean for SpectralToolbox
  Building wheel for dill (setup.py): started
  Building wheel for dill (setup.py): finished with status 'done'
  Stored in directory: /home/jenkins/.cache/pip/wheels/5b/d7/0f/e58eae695403de585269f4e4a94e0cd6ca60ec0c202936fa4a
  Building wheel for scikit-sparse (setup.py): started
  Building wheel for scikit-sparse (setup.py): finished with status 'error'
  ERROR: Complete output from command /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/bin/python -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-install-XmiENy/scikit-sparse/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-4kdOMe --python-tag cp27:
  ERROR: running bdist_wheel
  running build
  running build_py
  creating build
  creating build/lib.linux-x86_64-2.7
  creating build/lib.linux-x86_64-2.7/sksparse
  copying sksparse/test_cholmod.py -> build/lib.linux-x86_64-2.7/sksparse
  copying sksparse/_version.py -> build/lib.linux-x86_64-2.7/sksparse
  copying sksparse/__init__.py -> build/lib.linux-x86_64-2.7/sksparse
  creating build/lib.linux-x86_64-2.7/sksparse/test_data
  copying sksparse/test_data/illc1033.mtx.gz -> build/lib.linux-x86_64-2.7/sksparse/test_data
  copying sksparse/test_data/well1033_rhs1.mtx.gz -> build/lib.linux-x86_64-2.7/sksparse/test_data
  copying sksparse/test_data/illc1850_rhs1.mtx.gz -> build/lib.linux-x86_64-2.7/sksparse/test_data
  copying sksparse/test_data/well1033.mtx.gz -> build/lib.linux-x86_64-2.7/sksparse/test_data
  copying sksparse/test_data/well1850.mtx.gz -> build/lib.linux-x86_64-2.7/sksparse/test_data
  copying sksparse/test_data/illc1033_rhs1.mtx.gz -> build/lib.linux-x86_64-2.7/sksparse/test_data
  copying sksparse/test_data/illc1850.mtx.gz -> build/lib.linux-x86_64-2.7/sksparse/test_data
  copying sksparse/test_data/well1850_rhs1.mtx.gz -> build/lib.linux-x86_64-2.7/sksparse/test_data
  UPDATING build/lib.linux-x86_64-2.7/sksparse/_version.py
  set build/lib.linux-x86_64-2.7/sksparse/_version.py to '0.4.4'
  running build_ext
  skipping 'sksparse/cholmod.c' Cython extension (up-to-date)
  building 'sksparse.cholmod' extension
  creating build/temp.linux-x86_64-2.7
  creating build/temp.linux-x86_64-2.7/sksparse
  clang -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -I/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/local/lib/python2.7/site-packages/numpy/core/include -I/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/include -I/usr/include/suitesparse -I/usr/include/python2.7 -c sksparse/cholmod.c -o build/temp.linux-x86_64-2.7/sksparse/cholmod.o
  unable to execute 'clang': No such file or directory
  error: command 'clang' failed with exit status 1
  ----------------------------------------
  ERROR: Failed building wheel for scikit-sparse
  Running setup.py clean for scikit-sparse
  Building wheel for mpi4py (setup.py): started
  Building wheel for mpi4py (setup.py): finished with status 'done'
  Stored in directory: /home/jenkins/.cache/pip/wheels/a7/12/be/11b9ba83d337f1647a0fdea73fbe28a58b0593e64723233d64
Successfully built TransportMaps dill mpi4py
Failed to build orthpol-light SpectralToolbox scikit-sparse
Installing collected packages: orthpol-light, scipy, SpectralToolbox, dill, scikit-sparse, mpi4py, six, h5py, TransportMaps
  Running setup.py install for orthpol-light: started
    Running setup.py install for orthpol-light: finished with status 'error'
    ERROR: Complete output from command /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/bin/python -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-install-XmiENy/orthpol-light/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-ZUxc_g/install-record.txt --single-version-externally-managed --compile --install-headers /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/include/site/python2.7/orthpol-light:
    ERROR: running install
    running build
    running config_cc
    unifing config_cc, config, build_clib, build_ext, build commands --compiler options
    running config_fc
    unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
    running build_src
    build_src
    building extension "orthpol_light" sources
    f2py options: []
      adding 'build/src.linux-x86_64-2.7/build/src.linux-x86_64-2.7/fortranobject.c' to sources.
      adding 'build/src.linux-x86_64-2.7/build/src.linux-x86_64-2.7' to include_dirs.
      adding 'build/src.linux-x86_64-2.7/orthpol_light-f2pywrappers.f' to sources.
    build_src: building npy-pkg config files
    running build_ext
    customize UnixCCompiler
    customize UnixCCompiler using build_ext
    get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor']'
    customize Gnu95FCompiler
    Found executable /usr/bin/gfortran
    customize Gnu95FCompiler
    customize Gnu95FCompiler using build_ext
    building 'orthpol_light' extension
    compiling C sources
    C compiler: clang -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC
    
    creating build/temp.linux-x86_64-2.7/build
    creating build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7
    creating build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/build
    creating build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/build/src.linux-x86_64-2.7
    compile options: '-Ibuild/src.linux-x86_64-2.7/build/src.linux-x86_64-2.7 -I/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/local/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c'
    clang: build/src.linux-x86_64-2.7/orthpol_lightmodule.c
    clang: build/src.linux-x86_64-2.7/build/src.linux-x86_64-2.7/fortranobject.c
    error: Command "clang -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -Ibuild/src.linux-x86_64-2.7/build/src.linux-x86_64-2.7 -I/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/local/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c build/src.linux-x86_64-2.7/orthpol_lightmodule.c -o build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/orthpol_lightmodule.o -MMD -MF build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/orthpol_lightmodule.o.d" failed with exit status 127
    ----------------------------------------
ERROR: Command "/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/bin/python -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-install-XmiENy/orthpol-light/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-ZUxc_g/install-record.txt --single-version-externally-managed --compile --install-headers /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/include/site/python2.7/orthpol-light" failed with error code 1 in /tmp/pip-install-XmiENy/orthpol-light/
Build step 'Execute shell' marked build as failure
[WS-CLEANUP] Deleting project workspace...
[WS-CLEANUP] Skipped based on build state FAILURE
Finished: FAILURE