Started by upstream project "TransportMaps-private-master" build number 111
originally caused by:
Started by BitBucket push by Daniele Bigoni
Started by BitBucket push by Daniele Bigoni
Running as SYSTEM
[EnvInject] - Loading node environment variables.
Building remotely on reynolds-ubuntu14 in workspace /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv
[WS-CLEANUP] Deleting project workspace...
[WS-CLEANUP] Deferred wipeout is used...
No credentials specified
Cloning the remote Git repository
Cloning repository git@bitbucket.org:dabi86/transportmaps-private.git
> git init /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv # timeout=10
Fetching upstream changes from git@bitbucket.org:dabi86/transportmaps-private.git
> git --version # timeout=10
> git fetch --tags --progress git@bitbucket.org:dabi86/transportmaps-private.git +refs/heads/*:refs/remotes/origin/* # timeout=10
> git config remote.origin.url git@bitbucket.org:dabi86/transportmaps-private.git # timeout=10
> git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
> git config remote.origin.url git@bitbucket.org:dabi86/transportmaps-private.git # timeout=10
Fetching upstream changes from git@bitbucket.org:dabi86/transportmaps-private.git
> git fetch --tags --progress git@bitbucket.org:dabi86/transportmaps-private.git +refs/heads/*:refs/remotes/origin/* # timeout=10
Checking out Revision 9574b9da2c23e7d99c522541ec6046368b04b795 (refs/remotes/origin/master)
> git config core.sparsecheckout # timeout=10
> git checkout -f 9574b9da2c23e7d99c522541ec6046368b04b795 # timeout=10
Commit message: "test-source.sh added PATH for Jenkins"
First time build. Skipping changelog.
[virtualenv] $ /bin/bash -xe /tmp/jenkins5011384498916870290.sh
+ bash -ex jenkins/test-source.sh
+ set -e
+ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/jenkins/.local/bin
++ pwd
+ ROOT=/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv
++ echo TransportMaps-private-master/COMPILER=clang,MACHINE=reynolds-ubuntu14,PYTHON_EXE=python3,VENV_SYS=virtualenv
++ cut -d / -f 1
+ TEST_NAME=TransportMaps-private-master
+ ENV_NAME=venv_TransportMaps-private-master_python3
+ VENV_OPTS=
+ [[ TransportMaps-private-master == *\m\p\i* ]]
+ TTYPE=serial
+ MPI=False
++ hostname
+ [[ reynolds-ubuntu14 == *\m\a\c\y\s* ]]
++ hostname
+ [[ reynolds-ubuntu14 == \m\a\c\y\s\-\S\i\e\r\r\a ]]
++ hostname
+ [[ reynolds-ubuntu14 == *\r\e\y\n\o\l\d\s* ]]
+ export PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/jenkins/.local/bin:/home/jenkins/bin
+ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/jenkins/.local/bin:/home/jenkins/bin
+ '[' virtualenv = virtualenv ']'
+ rm -rf venv_TransportMaps-private-master_python3
+ virtualenv --python=python3 venv_TransportMaps-private-master_python3
Using base prefix '/usr'
New python executable in /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/bin/python3
Also creating executable in /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/bin/python
Installing setuptools, pip, wheel...
done.
Running virtualenv with interpreter /usr/bin/python3
+ source venv_TransportMaps-private-master_python3/bin/activate
++ deactivate nondestructive
++ unset -f pydoc
++ '[' -z '' ']'
++ '[' -z '' ']'
++ '[' -n /bin/bash ']'
++ hash -r
++ '[' -z '' ']'
++ unset VIRTUAL_ENV
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/jenkins/.local/bin:/home/jenkins/bin
++ PATH=/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/jenkins/.local/bin:/home/jenkins/bin
++ export PATH
++ '[' -z '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ '[' x '!=' x ']'
+++ basename /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3
++ PS1='(venv_TransportMaps-private-master_python3) '
++ export PS1
++ alias pydoc
++ true
++ '[' -n /bin/bash ']'
++ hash -r
++ python -V
+ PY_VERS='Python 3.4.3'
+ CMD='import logging;'
+ CMD+='import TransportMaps as TM;'
+ CMD+='import warnings;'
+ CMD+='warnings.simplefilter('\''ignore'\'');'
+ CMD+='TM.tests.run_all(log_level=logging.ERROR,ttype='\''serial'\'')'
+ echo ''
+ echo 'TEST_NAME: TransportMaps-private-master'
TEST_NAME: TransportMaps-private-master
++ hostname
+ echo 'HOSTNAME: reynolds-ubuntu14'
HOSTNAME: reynolds-ubuntu14
+ echo 'PATH: /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/jenkins/.local/bin:/home/jenkins/bin'
PATH: /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/jenkins/.local/bin:/home/jenkins/bin
+ echo 'VENV_OPTS: '
VENV_OPTS:
+ echo 'PY-VERS: Python 3.4.3'
PY-VERS: Python 3.4.3
+ echo 'PY-CMD: import logging;import TransportMaps as TM;import warnings;warnings.simplefilter('\''ignore'\'');TM.tests.run_all(log_level=logging.ERROR,ttype='\''serial'\'')'
PY-CMD: import logging;import TransportMaps as TM;import warnings;warnings.simplefilter('ignore');TM.tests.run_all(log_level=logging.ERROR,ttype='serial')
+ echo ''
+ echo 'Upgrading pip'
Upgrading pip
+ python /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/bin/pip install --upgrade pip
DEPRECATION: Python 3.4 support has been deprecated. pip 19.1 will be the last one supporting it. Please upgrade your Python as Python 3.4 won't be maintained after March 2019 (cf PEP 429).
Requirement already up-to-date: pip in ./venv_TransportMaps-private-master_python3/lib/python3.4/site-packages (19.1.1)
+ echo 'Installing numpy'
Installing numpy
+ python /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/bin/pip install --upgrade numpy
DEPRECATION: Python 3.4 support has been deprecated. pip 19.1 will be the last one supporting it. Please upgrade your Python as Python 3.4 won't be maintained after March 2019 (cf PEP 429).
Collecting numpy
Using cached https://files.pythonhosted.org/packages/d3/4b/f9f4b96c0b1ba43d28a5bdc4b64f0b9d3fbcf31313a51bc766942866a7c7/numpy-1.16.4.zip
Building wheels for collected packages: numpy
Building wheel for numpy (setup.py): started
Building wheel for numpy (setup.py): finished with status 'error'
ERROR: Complete output from command /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/bin/python -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-install-xmyxpz4n/numpy/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ym0qx3xx --python-tag cp34:
ERROR: Running from numpy source directory.
blas_opt_info:
blas_mkl_info:
customize UnixCCompiler
libraries mkl_rt not found in ['/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
blis_info:
customize UnixCCompiler
libraries blis not found in ['/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
openblas_info:
customize UnixCCompiler
customize UnixCCompiler
libraries openblas not found in ['/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
atlas_3_10_blas_threads_info:
Setting PTATLAS=ATLAS
customize UnixCCompiler
libraries tatlas not found in ['/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
atlas_3_10_blas_info:
customize UnixCCompiler
libraries satlas not found in ['/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
atlas_blas_threads_info:
Setting PTATLAS=ATLAS
customize UnixCCompiler
libraries ptf77blas,ptcblas,atlas not found in ['/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
atlas_blas_info:
customize UnixCCompiler
libraries f77blas,cblas,atlas not found in ['/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
accelerate_info:
NOT AVAILABLE
/tmp/pip-install-xmyxpz4n/numpy/numpy/distutils/system_info.py:639: UserWarning:
Atlas (http://math-atlas.sourceforge.net/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [atlas]) or by setting
the ATLAS environment variable.
self.calc_info()
blas_info:
customize UnixCCompiler
customize UnixCCompiler
C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC
creating /tmp/tmpq3u2ecjg/tmp
creating /tmp/tmpq3u2ecjg/tmp/tmpq3u2ecjg
compile options: '-I/usr/local/include -I/usr/include -I/usr/include/suitesparse -c'
x86_64-linux-gnu-gcc: /tmp/tmpq3u2ecjg/source.c
x86_64-linux-gnu-gcc -pthread /tmp/tmpq3u2ecjg/tmp/tmpq3u2ecjg/source.o -lcblas -o /tmp/tmpq3u2ecjg/a.out
/usr/bin/ld: cannot find -lcblas
collect2: error: ld returned 1 exit status
x86_64-linux-gnu-gcc -pthread /tmp/tmpq3u2ecjg/tmp/tmpq3u2ecjg/source.o -lblas -o /tmp/tmpq3u2ecjg/a.out
customize UnixCCompiler
FOUND:
define_macros = [('HAVE_CBLAS', None)]
libraries = ['blas', 'blas']
library_dirs = ['/usr/lib']
include_dirs = ['/usr/local/include', '/usr/include', '/usr/include/suitesparse']
language = c
FOUND:
define_macros = [('NO_ATLAS_INFO', 1), ('HAVE_CBLAS', None)]
libraries = ['blas', 'blas']
library_dirs = ['/usr/lib']
include_dirs = ['/usr/local/include', '/usr/include', '/usr/include/suitesparse']
language = c
/bin/sh: 1: svnversion: not found
non-existing path in 'numpy/distutils': 'site.cfg'
lapack_opt_info:
lapack_mkl_info:
customize UnixCCompiler
libraries mkl_rt not found in ['/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
openblas_lapack_info:
customize UnixCCompiler
customize UnixCCompiler
libraries openblas not found in ['/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
openblas_clapack_info:
customize UnixCCompiler
customize UnixCCompiler
libraries openblas,lapack not found in ['/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
atlas_3_10_threads_info:
Setting PTATLAS=ATLAS
customize UnixCCompiler
libraries lapack_atlas not found in /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib
customize UnixCCompiler
libraries tatlas,tatlas not found in /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/local/lib
customize UnixCCompiler
libraries tatlas,tatlas not found in /usr/local/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib
customize UnixCCompiler
libraries tatlas,tatlas not found in /usr/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu
customize UnixCCompiler
libraries tatlas,tatlas not found in /usr/lib/x86_64-linux-gnu
<class 'numpy.distutils.system_info.atlas_3_10_threads_info'>
NOT AVAILABLE
atlas_3_10_info:
customize UnixCCompiler
libraries lapack_atlas not found in /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib
customize UnixCCompiler
libraries satlas,satlas not found in /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/local/lib
customize UnixCCompiler
libraries satlas,satlas not found in /usr/local/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib
customize UnixCCompiler
libraries satlas,satlas not found in /usr/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu
customize UnixCCompiler
libraries satlas,satlas not found in /usr/lib/x86_64-linux-gnu
<class 'numpy.distutils.system_info.atlas_3_10_info'>
NOT AVAILABLE
atlas_threads_info:
Setting PTATLAS=ATLAS
customize UnixCCompiler
libraries lapack_atlas not found in /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib
customize UnixCCompiler
libraries ptf77blas,ptcblas,atlas not found in /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/local/lib
customize UnixCCompiler
libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib
customize UnixCCompiler
libraries ptf77blas,ptcblas,atlas not found in /usr/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu
customize UnixCCompiler
libraries ptf77blas,ptcblas,atlas not found in /usr/lib/x86_64-linux-gnu
<class 'numpy.distutils.system_info.atlas_threads_info'>
NOT AVAILABLE
atlas_info:
customize UnixCCompiler
libraries lapack_atlas not found in /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib
customize UnixCCompiler
libraries f77blas,cblas,atlas not found in /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/local/lib
customize UnixCCompiler
libraries f77blas,cblas,atlas not found in /usr/local/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib
customize UnixCCompiler
libraries f77blas,cblas,atlas not found in /usr/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu
customize UnixCCompiler
libraries f77blas,cblas,atlas not found in /usr/lib/x86_64-linux-gnu
<class 'numpy.distutils.system_info.atlas_info'>
NOT AVAILABLE
/tmp/pip-install-xmyxpz4n/numpy/numpy/distutils/system_info.py:639: UserWarning:
Atlas (http://math-atlas.sourceforge.net/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [atlas]) or by setting
the ATLAS environment variable.
self.calc_info()
lapack_info:
customize UnixCCompiler
customize UnixCCompiler
FOUND:
libraries = ['lapack', 'lapack']
library_dirs = ['/usr/lib']
language = f77
FOUND:
define_macros = [('NO_ATLAS_INFO', 1), ('HAVE_CBLAS', None)]
libraries = ['lapack', 'lapack', 'blas', 'blas']
library_dirs = ['/usr/lib']
language = c
include_dirs = ['/usr/local/include', '/usr/include', '/usr/include/suitesparse']
/usr/lib/python3.4/distutils/dist.py:260: UserWarning: Unknown distribution option: 'define_macros'
warnings.warn(msg)
running bdist_wheel
running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands --compiler options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
running build_src
build_src
building py_modules sources
creating build
creating build/src.linux-x86_64-3.4
creating build/src.linux-x86_64-3.4/numpy
creating build/src.linux-x86_64-3.4/numpy/distutils
building library "npymath" sources
get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor']'
customize Gnu95FCompiler
Found executable /usr/bin/gfortran
customize Gnu95FCompiler
customize Gnu95FCompiler using config
C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC
compile options: '-Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/include/python3.4m -I/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/include/python3.4m -c'
x86_64-linux-gnu-gcc: _configtest.c
x86_64-linux-gnu-gcc -pthread _configtest.o -o _configtest
success!
removing: _configtest.c _configtest.o _configtest.o.d _configtest
C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC
compile options: '-Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/include/python3.4m -I/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/include/python3.4m -c'
x86_64-linux-gnu-gcc: _configtest.c
_configtest.c:1:5: warning: conflicting types for built-in function ‘exp’ [enabled by default]
int exp (void);
^
x86_64-linux-gnu-gcc -pthread _configtest.o -o _configtest
_configtest.o: In function `main':
/tmp/pip-install-xmyxpz4n/numpy/_configtest.c:6: undefined reference to `exp'
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o _configtest.o.d
C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC
compile options: '-Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/include/python3.4m -I/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/include/python3.4m -c'
x86_64-linux-gnu-gcc: _configtest.c
_configtest.c:1:5: warning: conflicting types for built-in function ‘exp’ [enabled by default]
int exp (void);
^
x86_64-linux-gnu-gcc -pthread _configtest.o -lm -o _configtest
success!
removing: _configtest.c _configtest.o _configtest.o.d _configtest
creating build/src.linux-x86_64-3.4/numpy/core
creating build/src.linux-x86_64-3.4/numpy/core/src
creating build/src.linux-x86_64-3.4/numpy/core/src/npymath
conv_template:> build/src.linux-x86_64-3.4/numpy/core/src/npymath/npy_math_internal.h
adding 'build/src.linux-x86_64-3.4/numpy/core/src/npymath' to include_dirs.
conv_template:> build/src.linux-x86_64-3.4/numpy/core/src/npymath/ieee754.c
conv_template:> build/src.linux-x86_64-3.4/numpy/core/src/npymath/npy_math_complex.c
None - nothing done with h_files = ['build/src.linux-x86_64-3.4/numpy/core/src/npymath/npy_math_internal.h']
building library "npysort" sources
creating build/src.linux-x86_64-3.4/numpy/core/src/common
conv_template:> build/src.linux-x86_64-3.4/numpy/core/src/common/npy_sort.h
adding 'build/src.linux-x86_64-3.4/numpy/core/src/common' to include_dirs.
creating build/src.linux-x86_64-3.4/numpy/core/src/npysort
conv_template:> build/src.linux-x86_64-3.4/numpy/core/src/npysort/quicksort.c
conv_template:> build/src.linux-x86_64-3.4/numpy/core/src/npysort/mergesort.c
conv_template:> build/src.linux-x86_64-3.4/numpy/core/src/npysort/heapsort.c
conv_template:> build/src.linux-x86_64-3.4/numpy/core/src/common/npy_partition.h
conv_template:> build/src.linux-x86_64-3.4/numpy/core/src/npysort/selection.c
conv_template:> build/src.linux-x86_64-3.4/numpy/core/src/common/npy_binsearch.h
conv_template:> build/src.linux-x86_64-3.4/numpy/core/src/npysort/binsearch.c
None - nothing done with h_files = ['build/src.linux-x86_64-3.4/numpy/core/src/common/npy_sort.h', 'build/src.linux-x86_64-3.4/numpy/core/src/common/npy_partition.h', 'build/src.linux-x86_64-3.4/numpy/core/src/common/npy_binsearch.h']
building extension "numpy.core._dummy" sources
Generating build/src.linux-x86_64-3.4/numpy/core/include/numpy/config.h
C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC
compile options: '-Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/include/python3.4m -I/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/include/python3.4m -c'
x86_64-linux-gnu-gcc: _configtest.c
_configtest.c:1:20: fatal error: Python.h: No such file or directory
#include <Python.h>
^
compilation terminated.
failure.
removing: _configtest.c _configtest.o
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/pip-install-xmyxpz4n/numpy/setup.py", line 415, in <module>
setup_package()
File "/tmp/pip-install-xmyxpz4n/numpy/setup.py", line 407, in setup_package
setup(**metadata)
File "/tmp/pip-install-xmyxpz4n/numpy/numpy/distutils/core.py", line 171, in setup
return old_setup(**new_attr)
File "/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib/python3.4/site-packages/setuptools/__init__.py", line 145, in setup
return distutils.core.setup(**attrs)
File "/usr/lib/python3.4/distutils/core.py", line 148, in setup
dist.run_commands()
File "/usr/lib/python3.4/distutils/dist.py", line 955, in run_commands
self.run_command(cmd)
File "/usr/lib/python3.4/distutils/dist.py", line 974, in run_command
cmd_obj.run()
File "/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib/python3.4/site-packages/wheel/bdist_wheel.py", line 192, in run
self.run_command('build')
File "/usr/lib/python3.4/distutils/cmd.py", line 313, in run_command
self.distribution.run_command(command)
File "/usr/lib/python3.4/distutils/dist.py", line 974, in run_command
cmd_obj.run()
File "/tmp/pip-install-xmyxpz4n/numpy/numpy/distutils/command/build.py", line 47, in run
old_build.run(self)
File "/usr/lib/python3.4/distutils/command/build.py", line 126, in run
self.run_command(cmd_name)
File "/usr/lib/python3.4/distutils/cmd.py", line 313, in run_command
self.distribution.run_command(command)
File "/usr/lib/python3.4/distutils/dist.py", line 974, in run_command
cmd_obj.run()
File "/tmp/pip-install-xmyxpz4n/numpy/numpy/distutils/command/build_src.py", line 148, in run
self.build_sources()
File "/tmp/pip-install-xmyxpz4n/numpy/numpy/distutils/command/build_src.py", line 165, in build_sources
self.build_extension_sources(ext)
File "/tmp/pip-install-xmyxpz4n/numpy/numpy/distutils/command/build_src.py", line 322, in build_extension_sources
sources = self.generate_sources(sources, ext)
File "/tmp/pip-install-xmyxpz4n/numpy/numpy/distutils/command/build_src.py", line 375, in generate_sources
source = func(extension, build_dir)
File "numpy/core/setup.py", line 423, in generate_config_h
moredefs, ignored = cocache.check_types(config_cmd, ext, build_dir)
File "numpy/core/setup.py", line 47, in check_types
out = check_types(*a, **kw)
File "numpy/core/setup.py", line 281, in check_types
"install {0}-dev|{0}-devel.".format(python))
SystemError: Cannot compile 'Python.h'. Perhaps you need to install python-dev|python-devel.
----------------------------------------
ERROR: Failed building wheel for numpy
Running setup.py clean for numpy
ERROR: Complete output from command /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/bin/python -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-install-xmyxpz4n/numpy/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all:
ERROR: Running from numpy source directory.
`setup.py clean` is not supported, use one of the following instead:
- `git clean -xdf` (cleans all files)
- `git clean -Xdf` (cleans all versioned files, doesn't touch
files that aren't checked into the git repo)
Add `--force` to your command to use it anyway if you must (unsupported).
----------------------------------------
ERROR: Failed cleaning build dir for numpy
Failed to build numpy
Installing collected packages: numpy
Running setup.py install for numpy: started
Running setup.py install for numpy: finished with status 'error'
ERROR: Complete output from command /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/bin/python -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-install-xmyxpz4n/numpy/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-sgvjf4k0/install-record.txt --single-version-externally-managed --compile --install-headers /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/include/site/python3.4/numpy:
ERROR: Running from numpy source directory.
Note: if you need reliable uninstall behavior, then install
with pip instead of using `setup.py install`:
- `pip install .` (from a git repo or downloaded source
release)
- `pip install numpy` (last NumPy release on PyPi)
blas_opt_info:
blas_mkl_info:
customize UnixCCompiler
libraries mkl_rt not found in ['/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
blis_info:
customize UnixCCompiler
libraries blis not found in ['/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
openblas_info:
customize UnixCCompiler
customize UnixCCompiler
libraries openblas not found in ['/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
atlas_3_10_blas_threads_info:
Setting PTATLAS=ATLAS
customize UnixCCompiler
libraries tatlas not found in ['/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
atlas_3_10_blas_info:
customize UnixCCompiler
libraries satlas not found in ['/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
atlas_blas_threads_info:
Setting PTATLAS=ATLAS
customize UnixCCompiler
libraries ptf77blas,ptcblas,atlas not found in ['/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
atlas_blas_info:
customize UnixCCompiler
libraries f77blas,cblas,atlas not found in ['/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
accelerate_info:
NOT AVAILABLE
/tmp/pip-install-xmyxpz4n/numpy/numpy/distutils/system_info.py:639: UserWarning:
Atlas (http://math-atlas.sourceforge.net/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [atlas]) or by setting
the ATLAS environment variable.
self.calc_info()
blas_info:
customize UnixCCompiler
customize UnixCCompiler
C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC
creating /tmp/tmp6j1sscua/tmp
creating /tmp/tmp6j1sscua/tmp/tmp6j1sscua
compile options: '-I/usr/local/include -I/usr/include -I/usr/include/suitesparse -c'
x86_64-linux-gnu-gcc: /tmp/tmp6j1sscua/source.c
x86_64-linux-gnu-gcc -pthread /tmp/tmp6j1sscua/tmp/tmp6j1sscua/source.o -lcblas -o /tmp/tmp6j1sscua/a.out
/usr/bin/ld: cannot find -lcblas
collect2: error: ld returned 1 exit status
x86_64-linux-gnu-gcc -pthread /tmp/tmp6j1sscua/tmp/tmp6j1sscua/source.o -lblas -o /tmp/tmp6j1sscua/a.out
customize UnixCCompiler
FOUND:
language = c
include_dirs = ['/usr/local/include', '/usr/include', '/usr/include/suitesparse']
define_macros = [('HAVE_CBLAS', None)]
library_dirs = ['/usr/lib']
libraries = ['blas', 'blas']
FOUND:
define_macros = [('NO_ATLAS_INFO', 1), ('HAVE_CBLAS', None)]
include_dirs = ['/usr/local/include', '/usr/include', '/usr/include/suitesparse']
language = c
library_dirs = ['/usr/lib']
libraries = ['blas', 'blas']
/bin/sh: 1: svnversion: not found
non-existing path in 'numpy/distutils': 'site.cfg'
lapack_opt_info:
lapack_mkl_info:
customize UnixCCompiler
libraries mkl_rt not found in ['/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
openblas_lapack_info:
customize UnixCCompiler
customize UnixCCompiler
libraries openblas not found in ['/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
openblas_clapack_info:
customize UnixCCompiler
customize UnixCCompiler
libraries openblas,lapack not found in ['/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
atlas_3_10_threads_info:
Setting PTATLAS=ATLAS
customize UnixCCompiler
libraries lapack_atlas not found in /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib
customize UnixCCompiler
libraries tatlas,tatlas not found in /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/local/lib
customize UnixCCompiler
libraries tatlas,tatlas not found in /usr/local/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib
customize UnixCCompiler
libraries tatlas,tatlas not found in /usr/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu
customize UnixCCompiler
libraries tatlas,tatlas not found in /usr/lib/x86_64-linux-gnu
<class 'numpy.distutils.system_info.atlas_3_10_threads_info'>
NOT AVAILABLE
atlas_3_10_info:
customize UnixCCompiler
libraries lapack_atlas not found in /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib
customize UnixCCompiler
libraries satlas,satlas not found in /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/local/lib
customize UnixCCompiler
libraries satlas,satlas not found in /usr/local/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib
customize UnixCCompiler
libraries satlas,satlas not found in /usr/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu
customize UnixCCompiler
libraries satlas,satlas not found in /usr/lib/x86_64-linux-gnu
<class 'numpy.distutils.system_info.atlas_3_10_info'>
NOT AVAILABLE
atlas_threads_info:
Setting PTATLAS=ATLAS
customize UnixCCompiler
libraries lapack_atlas not found in /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib
customize UnixCCompiler
libraries ptf77blas,ptcblas,atlas not found in /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/local/lib
customize UnixCCompiler
libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib
customize UnixCCompiler
libraries ptf77blas,ptcblas,atlas not found in /usr/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu
customize UnixCCompiler
libraries ptf77blas,ptcblas,atlas not found in /usr/lib/x86_64-linux-gnu
<class 'numpy.distutils.system_info.atlas_threads_info'>
NOT AVAILABLE
atlas_info:
customize UnixCCompiler
libraries lapack_atlas not found in /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib
customize UnixCCompiler
libraries f77blas,cblas,atlas not found in /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/local/lib
customize UnixCCompiler
libraries f77blas,cblas,atlas not found in /usr/local/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib
customize UnixCCompiler
libraries f77blas,cblas,atlas not found in /usr/lib
customize UnixCCompiler
libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu
customize UnixCCompiler
libraries f77blas,cblas,atlas not found in /usr/lib/x86_64-linux-gnu
<class 'numpy.distutils.system_info.atlas_info'>
NOT AVAILABLE
/tmp/pip-install-xmyxpz4n/numpy/numpy/distutils/system_info.py:639: UserWarning:
Atlas (http://math-atlas.sourceforge.net/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [atlas]) or by setting
the ATLAS environment variable.
self.calc_info()
lapack_info:
customize UnixCCompiler
customize UnixCCompiler
FOUND:
library_dirs = ['/usr/lib']
language = f77
libraries = ['lapack', 'lapack']
FOUND:
define_macros = [('NO_ATLAS_INFO', 1), ('HAVE_CBLAS', None)]
library_dirs = ['/usr/lib']
language = c
libraries = ['lapack', 'lapack', 'blas', 'blas']
include_dirs = ['/usr/local/include', '/usr/include', '/usr/include/suitesparse']
/usr/lib/python3.4/distutils/dist.py:260: UserWarning: Unknown distribution option: 'define_macros'
warnings.warn(msg)
running install
running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands --compiler options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
running build_src
build_src
building py_modules sources
building library "npymath" sources
get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor']'
customize Gnu95FCompiler
Found executable /usr/bin/gfortran
customize Gnu95FCompiler
customize Gnu95FCompiler using config
C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC
compile options: '-Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/include/python3.4m -I/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/include/python3.4m -c'
x86_64-linux-gnu-gcc: _configtest.c
x86_64-linux-gnu-gcc -pthread _configtest.o -o _configtest
success!
removing: _configtest.c _configtest.o _configtest.o.d _configtest
C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC
compile options: '-Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/include/python3.4m -I/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/include/python3.4m -c'
x86_64-linux-gnu-gcc: _configtest.c
_configtest.c:1:5: warning: conflicting types for built-in function ‘exp’ [enabled by default]
int exp (void);
^
x86_64-linux-gnu-gcc -pthread _configtest.o -o _configtest
_configtest.o: In function `main':
/tmp/pip-install-xmyxpz4n/numpy/_configtest.c:6: undefined reference to `exp'
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o _configtest.o.d
C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC
compile options: '-Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/include/python3.4m -I/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/include/python3.4m -c'
x86_64-linux-gnu-gcc: _configtest.c
_configtest.c:1:5: warning: conflicting types for built-in function ‘exp’ [enabled by default]
int exp (void);
^
x86_64-linux-gnu-gcc -pthread _configtest.o -lm -o _configtest
success!
removing: _configtest.c _configtest.o _configtest.o.d _configtest
adding 'build/src.linux-x86_64-3.4/numpy/core/src/npymath' to include_dirs.
None - nothing done with h_files = ['build/src.linux-x86_64-3.4/numpy/core/src/npymath/npy_math_internal.h']
building library "npysort" sources
adding 'build/src.linux-x86_64-3.4/numpy/core/src/common' to include_dirs.
None - nothing done with h_files = ['build/src.linux-x86_64-3.4/numpy/core/src/common/npy_sort.h', 'build/src.linux-x86_64-3.4/numpy/core/src/common/npy_partition.h', 'build/src.linux-x86_64-3.4/numpy/core/src/common/npy_binsearch.h']
building extension "numpy.core._dummy" sources
Generating build/src.linux-x86_64-3.4/numpy/core/include/numpy/config.h
C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC
compile options: '-Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/include/python3.4m -I/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/include/python3.4m -c'
x86_64-linux-gnu-gcc: _configtest.c
_configtest.c:1:20: fatal error: Python.h: No such file or directory
#include <Python.h>
^
compilation terminated.
failure.
removing: _configtest.c _configtest.o
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/pip-install-xmyxpz4n/numpy/setup.py", line 415, in <module>
setup_package()
File "/tmp/pip-install-xmyxpz4n/numpy/setup.py", line 407, in setup_package
setup(**metadata)
File "/tmp/pip-install-xmyxpz4n/numpy/numpy/distutils/core.py", line 171, in setup
return old_setup(**new_attr)
File "/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/lib/python3.4/site-packages/setuptools/__init__.py", line 145, in setup
return distutils.core.setup(**attrs)
File "/usr/lib/python3.4/distutils/core.py", line 148, in setup
dist.run_commands()
File "/usr/lib/python3.4/distutils/dist.py", line 955, in run_commands
self.run_command(cmd)
File "/usr/lib/python3.4/distutils/dist.py", line 974, in run_command
cmd_obj.run()
File "/tmp/pip-install-xmyxpz4n/numpy/numpy/distutils/command/install.py", line 62, in run
r = self.setuptools_run()
File "/tmp/pip-install-xmyxpz4n/numpy/numpy/distutils/command/install.py", line 36, in setuptools_run
return distutils_install.run(self)
File "/usr/lib/python3.4/distutils/command/install.py", line 583, in run
self.run_command('build')
File "/usr/lib/python3.4/distutils/cmd.py", line 313, in run_command
self.distribution.run_command(command)
File "/usr/lib/python3.4/distutils/dist.py", line 974, in run_command
cmd_obj.run()
File "/tmp/pip-install-xmyxpz4n/numpy/numpy/distutils/command/build.py", line 47, in run
old_build.run(self)
File "/usr/lib/python3.4/distutils/command/build.py", line 126, in run
self.run_command(cmd_name)
File "/usr/lib/python3.4/distutils/cmd.py", line 313, in run_command
self.distribution.run_command(command)
File "/usr/lib/python3.4/distutils/dist.py", line 974, in run_command
cmd_obj.run()
File "/tmp/pip-install-xmyxpz4n/numpy/numpy/distutils/command/build_src.py", line 148, in run
self.build_sources()
File "/tmp/pip-install-xmyxpz4n/numpy/numpy/distutils/command/build_src.py", line 165, in build_sources
self.build_extension_sources(ext)
File "/tmp/pip-install-xmyxpz4n/numpy/numpy/distutils/command/build_src.py", line 322, in build_extension_sources
sources = self.generate_sources(sources, ext)
File "/tmp/pip-install-xmyxpz4n/numpy/numpy/distutils/command/build_src.py", line 375, in generate_sources
source = func(extension, build_dir)
File "numpy/core/setup.py", line 423, in generate_config_h
moredefs, ignored = cocache.check_types(config_cmd, ext, build_dir)
File "numpy/core/setup.py", line 47, in check_types
out = check_types(*a, **kw)
File "numpy/core/setup.py", line 281, in check_types
"install {0}-dev|{0}-devel.".format(python))
SystemError: Cannot compile 'Python.h'. Perhaps you need to install python-dev|python-devel.
----------------------------------------
ERROR: Command "/home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/bin/python -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-install-xmyxpz4n/numpy/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-sgvjf4k0/install-record.txt --single-version-externally-managed --compile --install-headers /home/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/reynolds-ubuntu14/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python3/include/site/python3.4/numpy" failed with error code 1 in /tmp/pip-install-xmyxpz4n/numpy/
Build step 'Execute shell' marked build as failure
[WS-CLEANUP] Deleting project workspace...
[WS-CLEANUP] Skipped based on build state FAILURE
Finished: FAILURE