Started by upstream project "TransportMaps-pypi-mpi" build number 157
originally caused by:
[URLTrigger] A change within the response URL invocation (log)
Running as SYSTEM
[EnvInject] - Loading node environment variables.
Building remotely on reynolds in workspace /jenkins/workspace/TransportMaps-pypi-mpi/COMPILER/gcc/MACHINE/reynolds/PYTHON_EXE/python3/VENV_SYS/virtualenv
[WS-CLEANUP] Deleting project workspace...
[WS-CLEANUP] Deferred wipeout is used...
[GitCheckoutListener] SCM 'hudson.scm.NullSCM' is not of type GitSCM
[virtualenv] $ /bin/bash -ex /tmp/jenkins217917769875415134.sh
+ tar -x
+ git archive --remote=git@bitbucket.org:dabi86/transportmaps.git HEAD:jenkins/ test-pypi.sh
+ bash test-pypi.sh
created virtual environment CPython3.10.6.final.0-64 in 133ms
creator CPython3Posix(dest=/jenkins/workspace/TransportMaps-pypi-mpi/COMPILER/gcc/MACHINE/reynolds/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-pypi-mpi_python3, clear=False, no_vcs_ignore=False, global=False)
seeder FromAppData(download=False, pip=bundle, setuptools=bundle, wheel=bundle, via=copy, app_data_dir=/home/jenkins/.local/share/virtualenv)
added seed packages: pip==22.0.2, setuptools==59.6.0, wheel==0.37.1
activators BashActivator,CShellActivator,FishActivator,NushellActivator,PowerShellActivator,PythonActivator
TEST_NAME: TransportMaps-pypi-mpi
HOSTNAME: reynolds
PATH: /jenkins/workspace/TransportMaps-pypi-mpi/COMPILER/gcc/MACHINE/reynolds/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-pypi-mpi_python3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/jenkins/bin:/home/jenkins/.local/bin
VENV_OPTS:
PATH: /jenkins/workspace/TransportMaps-pypi-mpi/COMPILER/gcc/MACHINE/reynolds/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-pypi-mpi_python3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/jenkins/bin:/home/jenkins/.local/bin
PY-VERS: Python 3.10.6
Upgrading pip
Requirement already satisfied: pip in /jenkins/workspace/TransportMaps-pypi-mpi/COMPILER/gcc/MACHINE/reynolds/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-pypi-mpi_python3/lib/python3.10/site-packages (22.0.2)
Collecting pip
Using cached pip-23.0.1-py3-none-any.whl (2.1 MB)
Installing collected packages: pip
Attempting uninstall: pip
Found existing installation: pip 22.0.2
Uninstalling pip-22.0.2:
Successfully uninstalled pip-22.0.2
Successfully installed pip-23.0.1
Installing numpy
Collecting numpy
Using cached numpy-1.24.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (17.3 MB)
Installing collected packages: numpy
Successfully installed numpy-1.24.2
Installing cython
Collecting cython
Using cached Cython-0.29.33-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (1.9 MB)
Installing collected packages: cython
Successfully installed cython-0.29.33
Installing TransportMaps
Collecting TransportMaps
Using cached transportmaps-3.0.5-py3-none-any.whl (555 kB)
Collecting fasteners
Using cached fasteners-0.18-py3-none-any.whl (18 kB)
Collecting orthpol-light>=1.0.1
Using cached orthpol_light-2.0.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_28_x86_64.whl (24 kB)
Requirement already satisfied: numpy>=1.15 in /jenkins/workspace/TransportMaps-pypi-mpi/COMPILER/gcc/MACHINE/reynolds/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-pypi-mpi_python3/lib/python3.10/site-packages (from TransportMaps) (1.24.2)
Collecting click
Using cached click-8.1.3-py3-none-any.whl (96 kB)
Collecting scipy
Using cached scipy-1.10.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (34.4 MB)
Collecting scikit-learn
Using cached scikit_learn-1.2.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (9.6 MB)
Collecting matplotlib
Using cached matplotlib-3.7.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (11.6 MB)
Collecting pyhmc
Using cached pyhmc-0.1.2-cp310-cp310-linux_x86_64.whl
Collecting tqdm
Using cached tqdm-4.65.0-py3-none-any.whl (77 kB)
Collecting SpectralToolbox>=1.0.7
Using cached spectraltoolbox-2.0.3-cp310-cp310-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (109 kB)
Collecting sortedcontainers
Using cached sortedcontainers-2.4.0-py2.py3-none-any.whl (29 kB)
Collecting mpi4py
Using cached mpi4py-3.1.4-cp310-cp310-linux_x86_64.whl
Collecting semilattices>=1.0
Using cached semilattices-1.0.1-py3-none-any.whl (78 kB)
Collecting mpi-map>=2.5
Using cached mpi_map-2.6-py3-none-any.whl (37 kB)
Collecting h5py
Using cached h5py-3.8.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.6 MB)
Collecting dill
Using cached dill-0.3.6-py3-none-any.whl (110 kB)
Collecting importlib-metadata
Using cached importlib_metadata-6.1.0-py3-none-any.whl (21 kB)
Collecting six
Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
Collecting pyparsing>=2.3.1
Using cached pyparsing-3.0.9-py3-none-any.whl (98 kB)
Collecting packaging>=20.0
Using cached packaging-23.0-py3-none-any.whl (42 kB)
Collecting fonttools>=4.22.0
Using cached fonttools-4.39.2-py3-none-any.whl (1.0 MB)
Collecting python-dateutil>=2.7
Using cached python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB)
Collecting kiwisolver>=1.0.1
Using cached kiwisolver-1.4.4-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (1.6 MB)
Collecting pillow>=6.2.0
Using cached Pillow-9.4.0-cp310-cp310-manylinux_2_28_x86_64.whl (3.4 MB)
Collecting contourpy>=1.0.1
Using cached contourpy-1.0.7-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (300 kB)
Collecting cycler>=0.10
Using cached cycler-0.11.0-py3-none-any.whl (6.4 kB)
Collecting joblib>=1.1.1
Using cached joblib-1.2.0-py3-none-any.whl (297 kB)
Collecting threadpoolctl>=2.0.0
Using cached threadpoolctl-3.1.0-py3-none-any.whl (14 kB)
Collecting zipp>=0.5
Using cached zipp-3.15.0-py3-none-any.whl (6.8 kB)
Installing collected packages: sortedcontainers, zipp, tqdm, threadpoolctl, six, scipy, pyparsing, pyhmc, pillow, packaging, orthpol-light, mpi4py, kiwisolver, joblib, h5py, fonttools, fasteners, dill, cycler, contourpy, click, SpectralToolbox, scikit-learn, python-dateutil, mpi-map, importlib-metadata, semilattices, matplotlib, TransportMaps
Successfully installed SpectralToolbox-2.0.3 TransportMaps-3.0.5 click-8.1.3 contourpy-1.0.7 cycler-0.11.0 dill-0.3.6 fasteners-0.18 fonttools-4.39.2 h5py-3.8.0 importlib-metadata-6.1.0 joblib-1.2.0 kiwisolver-1.4.4 matplotlib-3.7.1 mpi-map-2.6 mpi4py-3.1.4 orthpol-light-2.0.2 packaging-23.0 pillow-9.4.0 pyhmc-0.1.2 pyparsing-3.0.9 python-dateutil-2.8.2 scikit-learn-1.2.2 scipy-1.10.1 semilattices-1.0.1 six-1.16.0 sortedcontainers-2.4.0 threadpoolctl-3.1.0 tqdm-4.65.0 zipp-3.15.0
Running tests
Authorization required, but no authorization protocol specified
Authorization required, but no authorization protocol specified
Authorization required, but no authorization protocol specified
/jenkins/workspace/TransportMaps-pypi-mpi/COMPILER/gcc/MACHINE/reynolds/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-pypi-mpi_python3/lib/python3.10/site-packages/TransportMaps/__init__.py:148: UserWarning: Re-linking to SpectralToolbox. This is done every time a new version of either SpectralToolbox or TransportMaps are updated.
warnings.warn("Re-linking to SpectralToolbox. " + \
Traceback (most recent call last):
File "/usr/lib/python3.10/runpy.py", line 196, in _run_module_as_main
return _run_code(code, main_globals, None,
File "/usr/lib/python3.10/runpy.py", line 86, in _run_code
exec(code, run_globals)
File "/usr/lib/python3.10/unittest/__main__.py", line 18, in <module>
main(module=None)
File "/usr/lib/python3.10/unittest/main.py", line 100, in __init__
self.parseArgs(argv)
File "/usr/lib/python3.10/unittest/main.py", line 147, in parseArgs
self.createTests()
File "/usr/lib/python3.10/unittest/main.py", line 158, in createTests
self.test = self.testLoader.loadTestsFromNames(self.testNames,
File "/usr/lib/python3.10/unittest/loader.py", line 220, in loadTestsFromNames
suites = [self.loadTestsFromName(name, module) for name in names]
File "/usr/lib/python3.10/unittest/loader.py", line 220, in <listcomp>
suites = [self.loadTestsFromName(name, module) for name in names]
File "/usr/lib/python3.10/unittest/loader.py", line 154, in loadTestsFromName
module = __import__(module_name)
File "/jenkins/workspace/TransportMaps-pypi-mpi/COMPILER/gcc/MACHINE/reynolds/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-pypi-mpi_python3/lib/python3.10/site-packages/TransportMaps/__init__.py", line 155, in <module>
linking()
File "/jenkins/workspace/TransportMaps-pypi-mpi/COMPILER/gcc/MACHINE/reynolds/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-pypi-mpi_python3/lib/python3.10/site-packages/TransportMaps/__init__.py", line 153, in linking
os.symlink(s1d_dir + '/XML/schema/basis.xsd',
FileNotFoundError: [Errno 2] No such file or directory: '/jenkins/workspace/TransportMaps-pypi-mpi/COMPILER/gcc/MACHINE/reynolds/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-pypi-mpi_python3/lib/python3.10/site-packages/SpectralToolbox/Spectral1D/XML/schema/basis.xsd' -> '/jenkins/workspace/TransportMaps-pypi-mpi/COMPILER/gcc/MACHINE/reynolds/PYTHON_EXE/python3/VENV_SYS/virtualenv/venv_TransportMaps-pypi-mpi_python3/lib/python3.10/site-packages/TransportMaps/XML/schema/basis.xsd'
Build step 'Execute shell' marked build as failure
Sending e-mails to: tmteam-dev@mit.edu
[WS-CLEANUP] Deleting project workspace...
[WS-CLEANUP] Skipped based on build state FAILURE
Finished: FAILURE