Console Output
Started by upstream project "TransportMaps-testpypi-mpi" build number 115
originally caused by:
[URLTrigger] A change within the response URL invocation (log)
Running as SYSTEM
[EnvInject] - Loading node environment variables.
Building remotely on reynolds in workspace /jenkins/workspace/TransportMaps-testpypi-mpi/COMPILER/clang/MACHINE/reynolds/PYTHON_EXE/python2/VENV_SYS/virtualenv
[WS-CLEANUP] Deleting project workspace...
[WS-CLEANUP] Deferred wipeout is used...
[GitCheckoutListener] SCM 'hudson.scm.NullSCM' is not of type GitSCM
[virtualenv] $ /bin/bash /tmp/jenkins12136099939616974741.sh
created virtual environment CPython2.7.18.final.0-64 in 604ms
creator CPython2Posix(dest=/jenkins/workspace/TransportMaps-testpypi-mpi/COMPILER/clang/MACHINE/reynolds/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-testpypi-mpi_python2, clear=False, global=False)
seeder FromAppData(download=False, pip=latest, setuptools=latest, wheel=latest, pkg_resources=latest, via=copy, app_data_dir=/home/jenkins/.local/share/virtualenv/seed-app-data/v1.0.1.debian.1)
activators BashActivator,CShellActivator,FishActivator,PowerShellActivator,PythonActivator
Python 2.7.18
TEST_NAME: TransportMaps-testpypi-mpi
HOSTNAME: reynolds
PATH: /jenkins/workspace/TransportMaps-testpypi-mpi/COMPILER/clang/MACHINE/reynolds/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-testpypi-mpi_python2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/jenkins/bin
VENV_OPTS:
PATH: /jenkins/workspace/TransportMaps-testpypi-mpi/COMPILER/clang/MACHINE/reynolds/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-testpypi-mpi_python2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/jenkins/bin
PY-VERS:
PY-CMD: import logging;import TransportMaps as TM;import warnings;warnings.simplefilter('ignore');TM.tests.run_all(logging.ERROR,ttype='parallel')
Upgrading pip
DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support
Collecting pip
Using cached pip-20.3.4-py2.py3-none-any.whl (1.5 MB)
Installing collected packages: pip
Attempting uninstall: pip
Found existing installation: pip 20.0.2
Uninstalling pip-20.0.2:
Successfully uninstalled pip-20.0.2
Successfully installed pip-20.3.4
Installing numpy
DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. pip 21.0 will drop support for Python 2.7 in January 2021. More details about Python 2 support in pip can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support pip 21.0 will remove support for this functionality.
Collecting numpy
Using cached numpy-1.16.6-cp27-cp27mu-manylinux1_x86_64.whl (17.0 MB)
Installing collected packages: numpy
Successfully installed numpy-1.16.6
Checking out requirements files
Installing requirements
DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. pip 21.0 will drop support for Python 2.7 in January 2021. More details about Python 2 support in pip can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support pip 21.0 will remove support for this functionality.
Requirement already satisfied: numpy>=1.14 in /jenkins/workspace/TransportMaps-testpypi-mpi/COMPILER/clang/MACHINE/reynolds/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-testpypi-mpi_python2/lib/python2.7/site-packages (from -r requirements.txt (line 1)) (1.16.6)
Processing /home/jenkins/.cache/pip/wheels/08/d1/78/bb76eed0589a31eaf4d7f62b3a53ab79c6d4619d99dcf96c0b/orthpol_light-1.0.1-cp27-cp27mu-linux_x86_64.whl
Collecting scipy
Using cached scipy-1.2.3-cp27-cp27mu-manylinux1_x86_64.whl (24.8 MB)
Processing /home/jenkins/.cache/pip/wheels/c8/6c/62/1a4aa12e4622f93d036dc48051256c84838bcf5c56557e68e9/SpectralToolbox-1.0.12-cp27-cp27mu-linux_x86_64.whl
Collecting dill
Using cached dill-0.3.5.1-py2.py3-none-any.whl (95 kB)
Processing /home/jenkins/.cache/pip/wheels/e2/9a/ab/067414de0670f95436345d4ef33337d511a47aabc6c3307062/scikit_sparse-0.4.4-cp27-cp27mu-linux_x86_64.whl
Installing collected packages: orthpol-light, scipy, SpectralToolbox, dill, scikit-sparse
Successfully installed SpectralToolbox-1.0.12 dill-0.3.5.1 orthpol-light-1.0.1 scikit-sparse-0.4.4 scipy-1.2.3
DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. pip 21.0 will drop support for Python 2.7 in January 2021. More details about Python 2 support in pip can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support pip 21.0 will remove support for this functionality.
Collecting mpi4py
Using cached mpi4py-3.1.3.tar.gz (2.5 MB)
Installing build dependencies: started
Installing build dependencies: finished with status 'done'
Getting requirements to build wheel: started
Getting requirements to build wheel: finished with status 'done'
Installing backend dependencies: started
Installing backend dependencies: finished with status 'done'
Preparing wheel metadata: started
Preparing wheel metadata: finished with status 'done'
Collecting h5py
Using cached h5py-2.10.0-cp27-cp27mu-manylinux1_x86_64.whl (2.8 MB)
Requirement already satisfied: numpy>=1.7 in /jenkins/workspace/TransportMaps-testpypi-mpi/COMPILER/clang/MACHINE/reynolds/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-testpypi-mpi_python2/lib/python2.7/site-packages (from h5py->-r requirements-H5PY.txt (line 2)) (1.16.6)
Collecting six
Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
Building wheels for collected packages: mpi4py
Building wheel for mpi4py (PEP 517): started
Building wheel for mpi4py (PEP 517): finished with status 'error'
ERROR: Command errored out with exit status 1:
command: /jenkins/workspace/TransportMaps-testpypi-mpi/COMPILER/clang/MACHINE/reynolds/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-testpypi-mpi_python2/bin/python /jenkins/workspace/TransportMaps-testpypi-mpi/COMPILER/clang/MACHINE/reynolds/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-testpypi-mpi_python2/lib/python2.7/site-packages/pip/_vendor/pep517/_in_process.py build_wheel /tmp/tmpAUuNqA
cwd: /tmp/pip-install-txGZjg/mpi4py
Complete output (241 lines):
running bdist_wheel
running build
running build_src
running build_py
creating build
creating build/lib.linux-x86_64-2.7
creating build/lib.linux-x86_64-2.7/mpi4py
copying src/mpi4py/bench.py -> build/lib.linux-x86_64-2.7/mpi4py
copying src/mpi4py/__init__.py -> build/lib.linux-x86_64-2.7/mpi4py
copying src/mpi4py/__main__.py -> build/lib.linux-x86_64-2.7/mpi4py
copying src/mpi4py/run.py -> build/lib.linux-x86_64-2.7/mpi4py
creating build/lib.linux-x86_64-2.7/mpi4py/futures
copying src/mpi4py/futures/aplus.py -> build/lib.linux-x86_64-2.7/mpi4py/futures
copying src/mpi4py/futures/_lib.py -> build/lib.linux-x86_64-2.7/mpi4py/futures
copying src/mpi4py/futures/__init__.py -> build/lib.linux-x86_64-2.7/mpi4py/futures
copying src/mpi4py/futures/__main__.py -> build/lib.linux-x86_64-2.7/mpi4py/futures
copying src/mpi4py/futures/_base.py -> build/lib.linux-x86_64-2.7/mpi4py/futures
copying src/mpi4py/futures/server.py -> build/lib.linux-x86_64-2.7/mpi4py/futures
copying src/mpi4py/futures/_core.py -> build/lib.linux-x86_64-2.7/mpi4py/futures
copying src/mpi4py/futures/pool.py -> build/lib.linux-x86_64-2.7/mpi4py/futures
creating build/lib.linux-x86_64-2.7/mpi4py/util
copying src/mpi4py/util/dtlib.py -> build/lib.linux-x86_64-2.7/mpi4py/util
copying src/mpi4py/util/__init__.py -> build/lib.linux-x86_64-2.7/mpi4py/util
copying src/mpi4py/util/pkl5.py -> build/lib.linux-x86_64-2.7/mpi4py/util
copying src/mpi4py/py.typed -> build/lib.linux-x86_64-2.7/mpi4py
copying src/mpi4py/dl.pyi -> build/lib.linux-x86_64-2.7/mpi4py
copying src/mpi4py/__main__.pyi -> build/lib.linux-x86_64-2.7/mpi4py
copying src/mpi4py/MPI.pyi -> build/lib.linux-x86_64-2.7/mpi4py
copying src/mpi4py/run.pyi -> build/lib.linux-x86_64-2.7/mpi4py
copying src/mpi4py/bench.pyi -> build/lib.linux-x86_64-2.7/mpi4py
copying src/mpi4py/__init__.pyi -> build/lib.linux-x86_64-2.7/mpi4py
copying src/mpi4py/MPI.pxd -> build/lib.linux-x86_64-2.7/mpi4py
copying src/mpi4py/__init__.pxd -> build/lib.linux-x86_64-2.7/mpi4py
copying src/mpi4py/libmpi.pxd -> build/lib.linux-x86_64-2.7/mpi4py
creating build/lib.linux-x86_64-2.7/mpi4py/include
creating build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.MPI.h -> build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.MPI_api.h -> build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.h -> build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.i -> build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi.pxi -> build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py
copying src/mpi4py/futures/_core.pyi -> build/lib.linux-x86_64-2.7/mpi4py/futures
copying src/mpi4py/futures/__main__.pyi -> build/lib.linux-x86_64-2.7/mpi4py/futures
copying src/mpi4py/futures/aplus.pyi -> build/lib.linux-x86_64-2.7/mpi4py/futures
copying src/mpi4py/futures/pool.pyi -> build/lib.linux-x86_64-2.7/mpi4py/futures
copying src/mpi4py/futures/__init__.pyi -> build/lib.linux-x86_64-2.7/mpi4py/futures
copying src/mpi4py/futures/server.pyi -> build/lib.linux-x86_64-2.7/mpi4py/futures
copying src/mpi4py/futures/_lib.pyi -> build/lib.linux-x86_64-2.7/mpi4py/futures
copying src/mpi4py/util/pkl5.pyi -> build/lib.linux-x86_64-2.7/mpi4py/util
copying src/mpi4py/util/dtlib.pyi -> build/lib.linux-x86_64-2.7/mpi4py/util
copying src/mpi4py/util/__init__.pyi -> build/lib.linux-x86_64-2.7/mpi4py/util
Skipping optional fixer: collections
Skipping optional fixer: int
Skipping optional fixer: memoryview
Skipping optional fixer: unittest
running build_clib
MPI configuration: [mpi] from 'mpi.cfg'
MPI C compiler: /usr/bin/mpicc
MPI C++ compiler: /usr/bin/mpicxx
MPI F compiler: /usr/bin/mpifort
MPI F90 compiler: /usr/bin/mpif90
MPI F77 compiler: /usr/bin/mpif77
checking for library 'lmpe' ...
/usr/bin/mpicc -pthread -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-W1mjrO/python2.7-2.7.18=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -c _configtest.c -o _configtest.o
/usr/bin/mpicc -pthread _configtest.o -llmpe -o _configtest
/usr/bin/ld: cannot find -llmpe
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
building 'mpe' dylib library
creating build/temp.linux-x86_64-2.7
creating build/temp.linux-x86_64-2.7/src
creating build/temp.linux-x86_64-2.7/src/lib-pmpi
/usr/bin/mpicc -pthread -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-W1mjrO/python2.7-2.7.18=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -c src/lib-pmpi/mpe.c -o build/temp.linux-x86_64-2.7/src/lib-pmpi/mpe.o
creating build/lib.linux-x86_64-2.7/mpi4py/lib-pmpi
/usr/bin/mpicc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-W1mjrO/python2.7-2.7.18=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-W1mjrO/python2.7-2.7.18=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,--no-as-needed build/temp.linux-x86_64-2.7/src/lib-pmpi/mpe.o -o build/lib.linux-x86_64-2.7/mpi4py/lib-pmpi/libmpe.so
checking for library 'vt-mpi' ...
/usr/bin/mpicc -pthread -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-W1mjrO/python2.7-2.7.18=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -c _configtest.c -o _configtest.o
/usr/bin/mpicc -pthread _configtest.o -lvt-mpi -o _configtest
/usr/bin/ld: cannot find -lvt-mpi
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
checking for library 'vt.mpi' ...
/usr/bin/mpicc -pthread -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-W1mjrO/python2.7-2.7.18=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -c _configtest.c -o _configtest.o
/usr/bin/mpicc -pthread _configtest.o -lvt.mpi -o _configtest
/usr/bin/ld: cannot find -lvt.mpi
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
building 'vt' dylib library
/usr/bin/mpicc -pthread -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-W1mjrO/python2.7-2.7.18=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -c src/lib-pmpi/vt.c -o build/temp.linux-x86_64-2.7/src/lib-pmpi/vt.o
/usr/bin/mpicc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-W1mjrO/python2.7-2.7.18=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-W1mjrO/python2.7-2.7.18=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,--no-as-needed build/temp.linux-x86_64-2.7/src/lib-pmpi/vt.o -o build/lib.linux-x86_64-2.7/mpi4py/lib-pmpi/libvt.so
checking for library 'vt-mpi' ...
/usr/bin/mpicc -pthread -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-W1mjrO/python2.7-2.7.18=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -c _configtest.c -o _configtest.o
/usr/bin/mpicc -pthread _configtest.o -lvt-mpi -o _configtest
/usr/bin/ld: cannot find -lvt-mpi
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
checking for library 'vt.mpi' ...
/usr/bin/mpicc -pthread -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-W1mjrO/python2.7-2.7.18=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -c _configtest.c -o _configtest.o
/usr/bin/mpicc -pthread _configtest.o -lvt.mpi -o _configtest
/usr/bin/ld: cannot find -lvt.mpi
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
building 'vt-mpi' dylib library
/usr/bin/mpicc -pthread -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-W1mjrO/python2.7-2.7.18=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -c src/lib-pmpi/vt-mpi.c -o build/temp.linux-x86_64-2.7/src/lib-pmpi/vt-mpi.o
/usr/bin/mpicc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-W1mjrO/python2.7-2.7.18=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-W1mjrO/python2.7-2.7.18=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,--no-as-needed build/temp.linux-x86_64-2.7/src/lib-pmpi/vt-mpi.o -o build/lib.linux-x86_64-2.7/mpi4py/lib-pmpi/libvt-mpi.so
checking for library 'vt-hyb' ...
/usr/bin/mpicc -pthread -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-W1mjrO/python2.7-2.7.18=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -c _configtest.c -o _configtest.o
/usr/bin/mpicc -pthread _configtest.o -lvt-hyb -o _configtest
/usr/bin/ld: cannot find -lvt-hyb
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
checking for library 'vt.ompi' ...
/usr/bin/mpicc -pthread -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-W1mjrO/python2.7-2.7.18=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -c _configtest.c -o _configtest.o
/usr/bin/mpicc -pthread _configtest.o -lvt.ompi -o _configtest
/usr/bin/ld: cannot find -lvt.ompi
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
building 'vt-hyb' dylib library
/usr/bin/mpicc -pthread -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-W1mjrO/python2.7-2.7.18=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -c src/lib-pmpi/vt-hyb.c -o build/temp.linux-x86_64-2.7/src/lib-pmpi/vt-hyb.o
/usr/bin/mpicc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-W1mjrO/python2.7-2.7.18=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-W1mjrO/python2.7-2.7.18=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,--no-as-needed build/temp.linux-x86_64-2.7/src/lib-pmpi/vt-hyb.o -o build/lib.linux-x86_64-2.7/mpi4py/lib-pmpi/libvt-hyb.so
running build_ext
MPI configuration: [mpi] from 'mpi.cfg'
MPI C compiler: /usr/bin/mpicc
MPI C++ compiler: /usr/bin/mpicxx
MPI F compiler: /usr/bin/mpifort
MPI F90 compiler: /usr/bin/mpif90
MPI F77 compiler: /usr/bin/mpif77
checking for dlopen() availability ...
checking for header 'dlfcn.h' ...
x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-W1mjrO/python2.7-2.7.18=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/include/python2.7 -c _configtest.c -o _configtest.o
success!
removing: _configtest.c _configtest.o
success!
checking for library 'dl' ...
x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-W1mjrO/python2.7-2.7.18=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/include/python2.7 -c _configtest.c -o _configtest.o
x86_64-linux-gnu-gcc -pthread _configtest.o -Lbuild/temp.linux-x86_64-2.7 -ldl -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
checking for function 'dlopen' ...
x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-W1mjrO/python2.7-2.7.18=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/include/python2.7 -c _configtest.c -o _configtest.o
x86_64-linux-gnu-gcc -pthread _configtest.o -Lbuild/temp.linux-x86_64-2.7 -ldl -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
building 'mpi4py.dl' extension
x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-W1mjrO/python2.7-2.7.18=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DHAVE_DLFCN_H=1 -DHAVE_DLOPEN=1 -I/usr/include/python2.7 -c src/dynload.c -o build/temp.linux-x86_64-2.7/src/dynload.o
src/dynload.c:5:10: fatal error: Python.h: No such file or directory
5 | #include "Python.h"
| ^~~~~~~~~~
compilation terminated.
warning: build_ext: command 'x86_64-linux-gnu-gcc' failed with exit status 1
warning: build_ext: building optional extension "mpi4py.dl" failed
checking for MPI compile and link ...
/usr/bin/mpicc -pthread -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-W1mjrO/python2.7-2.7.18=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/include/python2.7 -c _configtest.c -o _configtest.o
success!
removing: _configtest.c _configtest.o
/usr/bin/mpicc -pthread -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-W1mjrO/python2.7-2.7.18=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/include/python2.7 -c _configtest.c -o _configtest.o
/usr/bin/mpicc -pthread _configtest.o -Lbuild/temp.linux-x86_64-2.7 -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
checking for missing MPI functions/symbols ...
/usr/bin/mpicc -pthread -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-W1mjrO/python2.7-2.7.18=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/include/python2.7 -c _configtest.c -o _configtest.o
success!
removing: _configtest.c _configtest.o
checking for function 'MPI_Type_create_f90_integer' ...
/usr/bin/mpicc -pthread -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-W1mjrO/python2.7-2.7.18=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/include/python2.7 -c _configtest.c -o _configtest.o
/usr/bin/mpicc -pthread _configtest.o -Lbuild/temp.linux-x86_64-2.7 -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
checking for function 'MPI_Type_create_f90_real' ...
/usr/bin/mpicc -pthread -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-W1mjrO/python2.7-2.7.18=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/include/python2.7 -c _configtest.c -o _configtest.o
/usr/bin/mpicc -pthread _configtest.o -Lbuild/temp.linux-x86_64-2.7 -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
checking for function 'MPI_Type_create_f90_complex' ...
/usr/bin/mpicc -pthread -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-W1mjrO/python2.7-2.7.18=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/include/python2.7 -c _configtest.c -o _configtest.o
/usr/bin/mpicc -pthread _configtest.o -Lbuild/temp.linux-x86_64-2.7 -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
checking for function 'MPI_Status_c2f' ...
/usr/bin/mpicc -pthread -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-W1mjrO/python2.7-2.7.18=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/include/python2.7 -c _configtest.c -o _configtest.o
/usr/bin/mpicc -pthread _configtest.o -Lbuild/temp.linux-x86_64-2.7 -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
checking for function 'MPI_Status_f2c' ...
/usr/bin/mpicc -pthread -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-W1mjrO/python2.7-2.7.18=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/include/python2.7 -c _configtest.c -o _configtest.o
/usr/bin/mpicc -pthread _configtest.o -Lbuild/temp.linux-x86_64-2.7 -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
checking for symbol 'MPI_LB' ...
/usr/bin/mpicc -pthread -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-W1mjrO/python2.7-2.7.18=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/include/python2.7 -c _configtest.c -o _configtest.o
_configtest.c: In function ‘main’:
_configtest.c:5:23: error: ‘MPI_LB’ undeclared (first use in this function); did you mean ‘MPI_IO’?
5 | MPI_Datatype s; s = MPI_LB; (void)s;
| ^~~~~~
| MPI_IO
_configtest.c:5:23: note: each undeclared identifier is reported only once for each function it appears in
failure.
removing: _configtest.c _configtest.o
checking for symbol 'MPI_UB' ...
/usr/bin/mpicc -pthread -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-W1mjrO/python2.7-2.7.18=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/include/python2.7 -c _configtest.c -o _configtest.o
_configtest.c: In function ‘main’:
_configtest.c:5:23: error: ‘MPI_UB’ undeclared (first use in this function); did you mean ‘MPI_IO’?
5 | MPI_Datatype s; s = MPI_UB; (void)s;
| ^~~~~~
| MPI_IO
_configtest.c:5:23: note: each undeclared identifier is reported only once for each function it appears in
failure.
removing: _configtest.c _configtest.o
checking for dlopen() availability ...
checking for header 'dlfcn.h' ...
/usr/bin/mpicc -pthread -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-W1mjrO/python2.7-2.7.18=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/include/python2.7 -c _configtest.c -o _configtest.o
success!
removing: _configtest.c _configtest.o
success!
checking for library 'dl' ...
/usr/bin/mpicc -pthread -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-W1mjrO/python2.7-2.7.18=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/include/python2.7 -c _configtest.c -o _configtest.o
/usr/bin/mpicc -pthread _configtest.o -Lbuild/temp.linux-x86_64-2.7 -ldl -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
checking for function 'dlopen' ...
/usr/bin/mpicc -pthread -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-W1mjrO/python2.7-2.7.18=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/include/python2.7 -c _configtest.c -o _configtest.o
/usr/bin/mpicc -pthread _configtest.o -Lbuild/temp.linux-x86_64-2.7 -ldl -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
building 'mpi4py.MPI' extension
/usr/bin/mpicc -pthread -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-W1mjrO/python2.7-2.7.18=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DPyMPI_MISSING_MPI_LB=1 -DPyMPI_MISSING_MPI_UB=1 -DHAVE_DLFCN_H=1 -DHAVE_DLOPEN=1 -I/usr/include/python2.7 -c src/MPI.c -o build/temp.linux-x86_64-2.7/src/MPI.o
In file included from src/MPI.c:4:
src/mpi4py.MPI.c:6:10: fatal error: Python.h: No such file or directory
6 | #include "Python.h"
| ^~~~~~~~~~
compilation terminated.
error: command '/usr/bin/mpicc' failed with exit status 1
----------------------------------------
ERROR: Failed building wheel for mpi4py
Failed to build mpi4py
ERROR: Could not build wheels for mpi4py which use PEP 517 and cannot be installed directly
Build step 'Execute shell' marked build as failure
Sending e-mails to: tmteam-dev@mit.edu
[WS-CLEANUP] Deleting project workspace...
[WS-CLEANUP] Skipped based on build state FAILURE
Finished: FAILURE