![[Jenkins]](/csi/static/19a05900/images/svgs/logo.svg){kind=logo}
Started by upstream project "avro_commit" build number 390 originally caused by: Started by GitLab push by Philip Running as SYSTEM [EnvInject] - Loading node environment variables. Building remotely on reynolds in workspace /jenkins/workspace/avro_commit/builddir/coverage_gnu5/buildnode/reynolds using credential 3614a4cf-01de-4393-97de-73734b7dd5a2 Cloning the remote Git repository Cloning repository git@gitlab.com:philipclaude/avro.git > git init /jenkins/workspace/avro_commit/builddir/coverage_gnu5/buildnode/reynolds # timeout=10 Fetching upstream changes from git@gitlab.com:philipclaude/avro.git > git --version # timeout=10 using GIT_SSH to set credentials > git fetch --tags --progress git@gitlab.com:philipclaude/avro.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url git@gitlab.com:philipclaude/avro.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url git@gitlab.com:philipclaude/avro.git # timeout=10 Pruning obsolete local branches Cleaning workspace > git rev-parse --verify HEAD # timeout=10 No valid HEAD. Skipping the resetting > git clean -fdx # timeout=10 Fetching upstream changes from git@gitlab.com:philipclaude/avro.git using GIT_SSH to set credentials > git fetch --tags --progress --prune git@gitlab.com:philipclaude/avro.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision c3154206e0937767a66651742eb8d460b42958ce (origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f c3154206e0937767a66651742eb8d460b42958ce # timeout=10 Commit message: "Merge branch 'master' of https://gitlab.com/philipclaude/avro" > git rev-list --no-walk 7d6b46f78c66a2d06d0f07da9690ab7cdfd3290f # timeout=10 [reynolds] $ /bin/bash -xe /tmp/jenkins7070705636291796670.sh + /bin/bash -ex /jenkins/workspace/avro_commit/builddir/coverage_gnu5/buildnode/reynolds/util/jenkins/commit.sh + cd /jenkins/workspace/avro_commit/builddir/coverage_gnu5/buildnode/reynolds + echo 'Removing any lingering untracked files' Removing any lingering untracked files ++ git ls-files --others --exclude-standard + [[ coverage_gnu5 == *\c\o\v\e\r\a\g\e* ]] + scp /jenkins/workspace/avro_commit/builddir/coverage_gnu5/buildnode/reynolds/util/jenkins/avro_email.template jenkins@acdl.mit.edu:email-templates/ + scp /jenkins/workspace/avro_commit/builddir/coverage_gnu5/buildnode/reynolds/util/jenkins/avro_parse jenkins@acdl.mit.edu:logparse/ + cmakedir=/jenkins/workspace/avro_commit/builddir/coverage_gnu5/buildnode/reynolds/build/coverage_gnu5 + mkdir -p /jenkins/workspace/avro_commit/builddir/coverage_gnu5/buildnode/reynolds/build/coverage_gnu5 + cd /jenkins/workspace/avro_commit/builddir/coverage_gnu5/buildnode/reynolds/build/coverage_gnu5 + rm -rf '/jenkins/workspace/avro_commit/builddir/coverage_gnu5/buildnode/reynolds/test/*.dat' + rm -rf '/jenkins/workspace/avro_commit/builddir/coverage_gnu5/buildnode/reynolds/text/*.mesh' + rm -f /jenkins/workspace/avro_commit/builddir/coverage_gnu5/buildnode/reynolds/build/coverage.xml + [[ coverage_gnu5 == *\c\o\v\e\r\a\g\e* ]] + CMAKE_ARGS= + [[ coverage_gnu5 == *\m\e\m\c\h\e\c\k* ]] + [[ coverage_gnu5 == *\g\n\u\4\8* ]] + source /jenkins/workspace/avro_commit/builddir/coverage_gnu5/buildnode/reynolds/util/jenkins/configure.sh +++ git rev-parse --show-toplevel ++ WORKSPACE=/jenkins/workspace/avro_commit/builddir/coverage_gnu5/buildnode/reynolds ++ source /jenkins/workspace/avro_commit/builddir/coverage_gnu5/buildnode/reynolds/util/jenkins/environment.sh +++ shopt -s nocasematch ++++ pwd +++ dir=/jenkins/workspace/avro_commit/builddir/coverage_gnu5/buildnode/reynolds/build/coverage_gnu5 ++++ basename /jenkins/workspace/avro_commit/builddir/coverage_gnu5/buildnode/reynolds/build/coverage_gnu5 +++ builddir=coverage_gnu5 ++++ hostname +++ [[ reynolds == *\r\e\y\n\o\l\d\s* ]] +++ [[ coverage_gnu5 == *\i\n\t\e\l\1\4* ]] +++ [[ coverage_gnu5 == *\i\n\t\e\l\1\5* ]] +++ [[ coverage_gnu5 == *\i\n\t\e\l\1\7* ]] +++ [[ coverage_gnu5 == *\i\n\t\e\l\1\8* ]] +++ export PATH=/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games +++ PATH=/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games +++ export LD_LIBRARY_PATH=/usr/lib: +++ LD_LIBRARY_PATH=/usr/lib: +++ export LAPACK_DIR=/home/jenkins/util/lapack/lapack-3.6.1/install +++ LAPACK_DIR=/home/jenkins/util/lapack/lapack-3.6.1/install +++ export ESP_DIR=/home/jenkins/util/ESP/EngSketchPad +++ ESP_DIR=/home/jenkins/util/ESP/EngSketchPad +++ export CAS_DIR=/home/jenkins/util/ESP/OpenCASCADE-6.8.1 +++ CAS_DIR=/home/jenkins/util/ESP/OpenCASCADE-6.8.1 +++ export PARMETIS_DIR=/home/jenkins/util/parmetis/parmetis-4.0.3/install +++ PARMETIS_DIR=/home/jenkins/util/parmetis/parmetis-4.0.3/install +++ export METIS_DIR=/home/jenkins/util/parmetis/metis-5.1.0/install +++ METIS_DIR=/home/jenkins/util/parmetis/metis-5.1.0/install +++ export PATH=/home/jenkins/util/lcov/lcov-1.13/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games +++ PATH=/home/jenkins/util/lcov/lcov-1.13/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games +++ export PATH=/home/jenkins/util/fefloa/bin:/home/jenkins/util/lcov/lcov-1.13/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games +++ PATH=/home/jenkins/util/fefloa/bin:/home/jenkins/util/lcov/lcov-1.13/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games ++++ hostname +++ [[ reynolds == *\c\e\n\t\O\S* ]] +++ env +++ hostname ++ [[ reynolds == *\m\a\c\y\s* ]] ++ cmake -DAVRO_WITH_MPI=ON /jenkins/workspace/avro_commit/builddir/coverage_gnu5/buildnode/reynolds -- Build type = coverage -- The C compiler identification is GNU 5.5.0 -- The CXX compiler identification is GNU 5.5.0 -- Check for working C compiler: /usr/bin/gcc-5 -- Check for working C compiler: /usr/bin/gcc-5 -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/g++-5 -- Check for working CXX compiler: /usr/bin/g++-5 -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.1") -- Found NLOPT: /usr/lib/x86_64-linux-gnu/libnlopt.so -- Found MPI_C: /usr/lib/openmpi/lib/libmpi.so -- Found MPI_CXX: /usr/lib/openmpi/lib/libmpi_cxx.so;/usr/lib/openmpi/lib/libmpi.so -- MPI not found -- Found PARMETIS: /usr/lib/libparmetis.so -- Setting gnu compiler flags -- using internal smart pointers since not cpp11 (shared_ptr) -- Try OpenMP C flag = [-fopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Success -- Try OpenMP CXX flag = [-fopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Success -- Found OpenMP: -fopenmp -- CPU thread manager = c++11. -- GPU threading not enabled. GPU thread manager = serial. -- Please install kcachegrind for graphical profiling. -- Please install massif-visualizer for graphical heap memory usage. -- Configuring done -- Generating done -- Build files have been written to: /jenkins/workspace/avro_commit/builddir/coverage_gnu5/buildnode/reynolds/build/coverage_gnu5 real 0m3.350s user 0m1.592s sys 0m0.428s + nproc=1 + [[ coverage_gnu5 == *\c\o\v\e\r\a\g\e* ]] + nproc=6 + make coverage_cleaner Scanning dependencies of target coverage_clean -- Removed all coverage files Built target coverage_clean Scanning dependencies of target coverage_cleaner -- Removed all binary and .gcno files Built target coverage_cleaner real 0m7.670s user 0m3.736s sys 0m1.568s + make -j 6 Scanning dependencies of target avro_third_party [ 0%] Building CXX object src/third_party/CMakeFiles/avro_third_party.dir/tetgen1.5.0/predicates.cxx.o [ 1%] Building C object src/third_party/CMakeFiles/avro_third_party.dir/libMeshb/libMeshb7/libmeshb7.c.o [ 1%] Building C object src/third_party/CMakeFiles/avro_third_party.dir/tinyexpr/tinyexpr.c.o [ 1%] Building CXX object src/third_party/CMakeFiles/avro_third_party.dir/tetgen1.5.0/tetgen.cxx.o [ 1%] Building C object src/third_party/CMakeFiles/avro_third_party.dir/tinyexpr/tests.c.o Scanning dependencies of target avro_src [ 1%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/dummy.cpp.o [ 2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_cpu.cpp.o [ 2%] Building C object src/third_party/CMakeFiles/avro_third_party.dir/triangle/triangle.c.o [ 2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/field.cpp.o [ 2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/data.cpp.o [ 2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/pointer.cpp.o [ 3%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_gpu.cpp.o [ 3%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_mpi.cpp.o [ 3%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/error.cpp.o [ 3%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/tools.cpp.o [ 3%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/geometrics.cpp.o [ 4%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/vertices.cpp.o [ 4%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/tecplot.cpp.o [ 4%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/simplex.cpp.o [ 4%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/boundary.cpp.o [ 4%] Built target avro_third_party [ 5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/convexPolytope.cpp.o [ 5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/domain.cpp.o [ 5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/curvilinear.cpp.o [ 5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/search.cpp.o [ 5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/gamma.cpp.o [ 6%] Building CXX object 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src/CMakeFiles/avro_src.dir/lib/mesh/local/avro.cpp.o [ 11%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/local/partition.cpp.o [ 11%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/local/debug.cpp.o [ 12%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/local/adaptation.cpp.o [ 12%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/local/topology.cpp.o [ 12%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/local/primitive.cpp.o [ 12%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/external/mesher.cpp.o [ 12%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/airfoils.cpp.o [ 13%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/vertices.cpp.o [ 13%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/mda3.cpp.o [ 13%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/wings.cpp.o [ 13%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/geometry.cpp.o [ 14%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/tesseract.cpp.o [ 14%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/sphere.cpp.o [ 14%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/plots.cpp.o [ 14%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/bisectors.cpp.o [ 14%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/polytope.cpp.o [ 15%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/unit.cpp.o [ 15%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/cube.cpp.o [ 15%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/topology.cpp.o [ 15%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/mesh.cpp.o [ 16%] Building CXX object src/CMakeFiles/avro_src.dir/lib/library/metric.cpp.o [ 16%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/context.cpp.o [ 16%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/boundary.cpp.o [ 16%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/object.cpp.o [ 16%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/transformation.cpp.o [ 17%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/domain.cpp.o [ 17%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/model.cpp.o [ 17%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/temporal.cpp.o [ 17%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/builder.cpp.o [ 18%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/error.cpp.o [ 18%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/tessellation.cpp.o [ 18%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/entity.cpp.o [ 18%] Building CXX object src/CMakeFiles/avro_src.dir/lib/geometry/body.cpp.o [ 19%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/densmat.cpp.o [ 19%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/determinant.cpp.o [ 19%] Building CXX object 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22%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/metric.cpp.o [ 22%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side2_exact.cpp.o [ 22%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_4d.cpp.o [ 22%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_7d.cpp.o [ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side1_exact.cpp.o [ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side4_exact.cpp.o [ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_9d.cpp.o [ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_5d.cpp.o [ 23%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_10d.cpp.o [ 24%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_8d.cpp.o [ 24%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/orient4d.cpp.o [ 24%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side3_exact.cpp.o [ 24%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_6d.cpp.o [ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side5_exact.cpp.o [ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/numerics/predicates/side_filters_3d.cpp.o [ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/colormap.cpp.o [ 25%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/plot.cpp.o [ 26%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/plotter.cpp.o [ 26%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/server.cpp.o [ 26%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/slice.cpp.o [ 26%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/plane.cpp.o [ 26%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/hyperplane.cpp.o [ 27%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/primitive.cpp.o [ 27%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graphics/message.cpp.o [ 27%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graph/dijkstra.cpp.o [ 27%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graph/kdtree.cpp.o [ 28%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graph/graph.cpp.o [ 28%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graph/path.cpp.o [ 28%] Building CXX object src/CMakeFiles/avro_src.dir/lib/graph/neighbours.cpp.o Build was aborted [WARNINGS] Skipping publisher since build result is ABORTED [Cobertura] Skipping Cobertura coverage report as build was not FAILURE or better ... [PostBuildScript] - [INFO] Executing post build scripts. [PostBuildScript] - [INFO] build step #0 should only be executed on MATRIX Finished: ABORTED