Console Output

Started by upstream project "avro_commit" build number 394
originally caused by:
 Started by GitLab push by Philip
Running as SYSTEM
[EnvInject] - Loading node environment variables.
Building remotely on reynolds in workspace /jenkins/workspace/avro_commit/builddir/coverage_gnu5/buildnode/reynolds
using credential 3614a4cf-01de-4393-97de-73734b7dd5a2
 > git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url git@gitlab.com:philipclaude/avro.git # timeout=10
Pruning obsolete local branches
Cleaning workspace
 > git rev-parse --verify HEAD # timeout=10
Resetting working tree
 > git reset --hard # timeout=10
 > git clean -fdx # timeout=10
Fetching upstream changes from git@gitlab.com:philipclaude/avro.git
 > git --version # timeout=10
using GIT_SSH to set credentials 
 > git fetch --tags --progress --prune git@gitlab.com:philipclaude/avro.git +refs/heads/*:refs/remotes/origin/* # timeout=10
Checking out Revision 05b1890fb0b375ddb1dd1cddb36932b94f1418c4 (origin/master)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 05b1890fb0b375ddb1dd1cddb36932b94f1418c4 # timeout=10
Commit message: "Merge branch 'philip' into 'master'"
 > git rev-list --no-walk 5406a94c463acec854c6ae3d4132f42c50702691 # timeout=10
[reynolds] $ /bin/bash -xe /tmp/jenkins865916533092722906.sh
+ /bin/bash -ex /jenkins/workspace/avro_commit/builddir/coverage_gnu5/buildnode/reynolds/util/jenkins/commit.sh
+ cd /jenkins/workspace/avro_commit/builddir/coverage_gnu5/buildnode/reynolds
+ echo 'Removing any lingering untracked files'
Removing any lingering untracked files
++ git ls-files --others --exclude-standard
+ [[ coverage_gnu5 == *\c\o\v\e\r\a\g\e* ]]
+ scp /jenkins/workspace/avro_commit/builddir/coverage_gnu5/buildnode/reynolds/util/jenkins/avro_email.template jenkins@acdl.mit.edu:email-templates/
+ scp /jenkins/workspace/avro_commit/builddir/coverage_gnu5/buildnode/reynolds/util/jenkins/avro_parse jenkins@acdl.mit.edu:logparse/
+ cmakedir=/jenkins/workspace/avro_commit/builddir/coverage_gnu5/buildnode/reynolds/build/coverage_gnu5
+ mkdir -p /jenkins/workspace/avro_commit/builddir/coverage_gnu5/buildnode/reynolds/build/coverage_gnu5
+ cd /jenkins/workspace/avro_commit/builddir/coverage_gnu5/buildnode/reynolds/build/coverage_gnu5
+ rm -rf '/jenkins/workspace/avro_commit/builddir/coverage_gnu5/buildnode/reynolds/test/*.dat'
+ rm -rf '/jenkins/workspace/avro_commit/builddir/coverage_gnu5/buildnode/reynolds/text/*.mesh'
+ rm -f /jenkins/workspace/avro_commit/builddir/coverage_gnu5/buildnode/reynolds/build/coverage.xml
+ [[ coverage_gnu5 == *\c\o\v\e\r\a\g\e* ]]
+ CMAKE_ARGS=
+ [[ coverage_gnu5 == *\m\e\m\c\h\e\c\k* ]]
+ [[ coverage_gnu5 == *\g\n\u\4\8* ]]
+ source /jenkins/workspace/avro_commit/builddir/coverage_gnu5/buildnode/reynolds/util/jenkins/configure.sh
+++ git rev-parse --show-toplevel
++ WORKSPACE=/jenkins/workspace/avro_commit/builddir/coverage_gnu5/buildnode/reynolds
++ source /jenkins/workspace/avro_commit/builddir/coverage_gnu5/buildnode/reynolds/util/jenkins/environment.sh
+++ shopt -s nocasematch
++++ pwd
+++ dir=/jenkins/workspace/avro_commit/builddir/coverage_gnu5/buildnode/reynolds/build/coverage_gnu5
++++ basename /jenkins/workspace/avro_commit/builddir/coverage_gnu5/buildnode/reynolds/build/coverage_gnu5
+++ builddir=coverage_gnu5
++++ hostname
+++ [[ reynolds == *\r\e\y\n\o\l\d\s* ]]
+++ [[ coverage_gnu5 == *\i\n\t\e\l\1\4* ]]
+++ [[ coverage_gnu5 == *\i\n\t\e\l\1\5* ]]
+++ [[ coverage_gnu5 == *\i\n\t\e\l\1\7* ]]
+++ [[ coverage_gnu5 == *\i\n\t\e\l\1\8* ]]
+++ export PATH=/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
+++ PATH=/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
+++ export LD_LIBRARY_PATH=/usr/lib:
+++ LD_LIBRARY_PATH=/usr/lib:
+++ export LAPACK_DIR=/home/jenkins/util/lapack/lapack-3.6.1/install
+++ LAPACK_DIR=/home/jenkins/util/lapack/lapack-3.6.1/install
+++ export ESP_DIR=/home/jenkins/util/ESP/EngSketchPad
+++ ESP_DIR=/home/jenkins/util/ESP/EngSketchPad
+++ export CAS_DIR=/home/jenkins/util/ESP/OpenCASCADE-7.4.1
+++ CAS_DIR=/home/jenkins/util/ESP/OpenCASCADE-7.4.1
+++ export PARMETIS_DIR=/home/jenkins/util/parmetis/parmetis-4.0.3/install
+++ PARMETIS_DIR=/home/jenkins/util/parmetis/parmetis-4.0.3/install
+++ export METIS_DIR=/home/jenkins/util/parmetis/metis-5.1.0/install
+++ METIS_DIR=/home/jenkins/util/parmetis/metis-5.1.0/install
+++ export PATH=/home/jenkins/util/lcov/lcov-1.13/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
+++ PATH=/home/jenkins/util/lcov/lcov-1.13/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
+++ export PATH=/home/jenkins/util/fefloa/bin:/home/jenkins/util/lcov/lcov-1.13/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
+++ PATH=/home/jenkins/util/fefloa/bin:/home/jenkins/util/lcov/lcov-1.13/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
++++ hostname
+++ [[ reynolds == *\c\e\n\t\O\S* ]]
+++ env
+++ hostname
++ [[ reynolds == *\m\a\c\y\s* ]]
++ cmake -DAVRO_WITH_MPI=ON /jenkins/workspace/avro_commit/builddir/coverage_gnu5/buildnode/reynolds
-- Build type = coverage
-- The C compiler identification is GNU 5.5.0
-- The CXX compiler identification is GNU 5.5.0
-- Check for working C compiler: /usr/bin/gcc-5
-- Check for working C compiler: /usr/bin/gcc-5 -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/g++-5
-- Check for working CXX compiler: /usr/bin/g++-5 -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.1") 
-- Found NLOPT: /usr/lib/x86_64-linux-gnu/libnlopt.so  
-- Found MPI_C: /usr/lib/openmpi/lib/libmpi.so  
-- Found MPI_CXX: /usr/lib/openmpi/lib/libmpi_cxx.so;/usr/lib/openmpi/lib/libmpi.so  
-- MPI not found
-- Found PARMETIS: /usr/lib/libparmetis.so  
-- Setting gnu compiler flags
-- using internal smart pointers since not cpp11 (shared_ptr)
-- Try OpenMP C flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Try OpenMP CXX flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Found OpenMP: -fopenmp  
-- CPU thread manager = c++11.
-- GPU threading not enabled. GPU thread manager = serial.
-- Please install kcachegrind for graphical profiling.
-- Please install massif-visualizer for graphical heap memory usage.
-- Configuring done
-- Generating done
-- Build files have been written to: /jenkins/workspace/avro_commit/builddir/coverage_gnu5/buildnode/reynolds/build/coverage_gnu5

real	0m2.038s
user	0m1.348s
sys	0m0.368s
+ nproc=1
+ [[ coverage_gnu5 == *\c\o\v\e\r\a\g\e* ]]
+ nproc=6
+ make coverage_cleaner
Scanning dependencies of target coverage_clean
-- Removed all coverage files
Built target coverage_clean
Scanning dependencies of target coverage_cleaner
-- Removed all binary and .gcno files
Built target coverage_cleaner

real	0m7.441s
user	0m3.484s
sys	0m0.964s
+ make -j 6
Scanning dependencies of target avro_third_party
[  1%] Building CXX object src/third_party/CMakeFiles/avro_third_party.dir/tetgen1.5.0/tetgen.cxx.o
[  1%] Building C object src/third_party/CMakeFiles/avro_third_party.dir/libMeshb/libMeshb7/libmeshb7.c.o
[  1%] Building CXX object src/third_party/CMakeFiles/avro_third_party.dir/tetgen1.5.0/predicates.cxx.o
[  1%] Building C object src/third_party/CMakeFiles/avro_third_party.dir/tinyexpr/tests.c.o
[  1%] Building C object src/third_party/CMakeFiles/avro_third_party.dir/tinyexpr/tinyexpr.c.o
Scanning dependencies of target avro_src
[  1%] Building C object src/third_party/CMakeFiles/avro_third_party.dir/triangle/triangle.c.o
[  1%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/dummy.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_cpu.cpp.o
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[  2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/data.cpp.o
[  2%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/pointer.cpp.o
[  3%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_gpu.cpp.o
[  3%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/process_mpi.cpp.o
[  3%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/error.cpp.o
[  3%] Building CXX object src/CMakeFiles/avro_src.dir/lib/common/tools.cpp.o
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[  4%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/vertices.cpp.o
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[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/domain.cpp.o
[  5%] Built target avro_third_party
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/curvilinear.cpp.o
[  5%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/search.cpp.o
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[  6%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/inverse.cpp.o
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[  7%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/edges.cpp.o
[  7%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/topology_curvilinear.cpp.o
[  7%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/topology.cpp.o
[  7%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/topology_simplex.cpp.o
[  8%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/detective.cpp.o
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[  9%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/delaunay/mesher.cpp.o
[  9%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/delaunay/delaunay.cpp.o
[  9%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/delaunay/voronoi_vertex.cpp.o
[ 10%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/delaunay/voronoi_diagram.cpp.o
[ 10%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/delaunay/triangulation.cpp.o
[ 10%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/local/properties.cpp.o
[ 10%] Building CXX object src/CMakeFiles/avro_src.dir/lib/mesh/local/filter.cpp.o
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[ 30%] Built target avro_src
Scanning dependencies of target avro_shared
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Scanning dependencies of target avro_lib
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real	1m39.061s
user	8m17.452s
sys	1m0.244s
+ [[ coverage_gnu5 == *\c\o\v\e\r\a\g\e* ]]
+ make unit_coverage
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Scanning dependencies of target unit

avro compiled with c++11deleting memory upon termination using std::shared_ptr (c++11).

enabling cpp threads
only enabling serial computations
  Initializing robust predicates.
  sizeof(double) =  8
  machine epsilon =   2.22045e-16 [IEEE 754 64-bit macheps]
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running suite: VertexSmoothing                with   2 tests ... done [ 23 s : 655 ms]
running suite: API_adapt3d_suite              with   1 tests ... unit_exe: /jenkins/workspace/avro_commit/builddir/coverage_gnu5/buildnode/reynolds/src/lib/numerics/metric.cpp:998: void avro::numerics::DiscreteField::limit(const avro::Topology<type>&, avro::real) [with type = avro::Simplex; avro::real = double]: Assertion `false' failed.
Aborted (core dumped)
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make: *** [unit_coverage] Error 2
Build step 'Execute shell' marked build as failure
[WARNINGS] Skipping publisher since build result is FAILURE
[Cobertura] Publishing Cobertura coverage report...

[PostBuildScript] - [INFO] Executing post build scripts.
[PostBuildScript] - [INFO] build step #0 should only be executed on MATRIX
Finished: FAILURE