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Executable/home1/jenkins/workspace/ProjectX_Weekly/PX_ARC/relwithdebinfo_gnu/buildnode/reynolds/platforms/relwithdebinfo_gnu/bin/ProjectXExec
PID26354
PPID16382
Unique ID0x1137
Text2,480 bytes in 1 blocks are still reachable in loss record 4,406 of 4,624
Auxiliary
Suppression{
   <insert_a_suppression_name_here>
   Memcheck:Leak
   match-leak-kinds: reachable
   fun:malloc
   fun:PXAllocate2
   fun:PXCreateLocAttachGlobRealElem
   fun:PXCreateAttachGlobRealElem
   fun:PXInitializeGridData
   fun:PXPreProcessBackgroundGridToRemoveDoubleSplineFace
   fun:PXIntersect2DCutGrid
   fun:PXBuildCutGrid2D
   fun:ReadCutGridInputFiles
   fun:PXReadInputFile
   fun:PXReadGridBcFuncFiles
   fun:PXInitializePre
   fun:main
}

Stacktrace

Object/usr/lib/valgrind/vgpreload_memcheck-amd64-linux.so
Functionmalloc
File/Line
CodeSource code not available

Object/home1/jenkins/workspace/ProjectX_Weekly/PX_ARC/relwithdebinfo_gnu/buildnode/reynolds/platforms/relwithdebinfo_gnu/bin/ProjectXExec
FunctionPXAllocate2
File/Line/home1/jenkins/workspace/ProjectX_Weekly/PX_ARC/relwithdebinfo_gnu/buildnode/reynolds/src/Fundamentals/PXMemory.c:140
Code
130     printf("Error, requesting allocation of negative memory size.\n"); fflush(stdout);
131     *po=NULL;
132     return PXError(PX_MEMORY_ERROR);
133   }
134 
135   if ( unlikely( n1 == 0 ) ){
136     *po=NULL;
137     return PX_NO_ERROR;
138   }
139 
140   if ( (_po   = (char **)malloc( n1*sizeof(char *) )) == NULL ){
141     *po=NULL;
142     return PXError(PX_MEMORY_ERROR);
143   }
144 
145   if (n2 != 0){

Object/home1/jenkins/workspace/ProjectX_Weekly/PX_ARC/relwithdebinfo_gnu/buildnode/reynolds/platforms/relwithdebinfo_gnu/bin/ProjectXExec
FunctionPXCreateLocAttachGlobRealElem
File/Line/home1/jenkins/workspace/ProjectX_Weekly/PX_ARC/relwithdebinfo_gnu/buildnode/reynolds/src/Grid/PXGridAttachments.c:1534
Code
1524   (*GlobRealElemData)->stepIndex = 0;
1525 
1526   /*--------------------------*/
1527   /* Allocate space for Value */
1528   /*--------------------------*/
1529   PXErrorReturn( PXAllocate( negrp+nghostegrp, sizeof(PX_REAL **), (void **)&((*GlobRealElemData)->value) ) );
1530 
1531   for (egrp = 0; egrp < negrp+nghostegrp; egrp++) {
1532     /* printf("egrp = %d, allocated (nelem x rank) = (%d,%d)\n",egrp,pg->ElementGroup[egrp].nElement,(*GlobRealElemData)->rank[egrp%negrp]); */
1533     (*GlobRealElemData)->value[egrp] = NULL;
1534     PXErrorReturn( PXAllocate2( pg->ElementGroup[egrp].nElement, (*GlobRealElemData)->rank[egrp%negrp], sizeof(PX_REAL), (void **)&((*GlobRealElemData)->value[egrp]) ) );
1535   }
1536 
1537   /* Parallel Data */
1538   (*GlobRealElemData)->recv_request = NULL;
1539   if ( ParallelFlag == PXE_True ) {

Object/home1/jenkins/workspace/ProjectX_Weekly/PX_ARC/relwithdebinfo_gnu/buildnode/reynolds/platforms/relwithdebinfo_gnu/bin/ProjectXExec
FunctionPXCreateAttachGlobRealElem
File/Line/home1/jenkins/workspace/ProjectX_Weekly/PX_ARC/relwithdebinfo_gnu/buildnode/reynolds/src/Grid/PXGridAttachments.c:1897
Code
1887 
1888   /* Create Generic Attachment */
1889   PXErrorReturn( PXCreateGenAttach( pg, title, &an ) );
1890 
1891 /*   printf("                                                                                                   title = %s\n",title); */
1892 
1893   /* Set Attachment Type */
1894   pg->Attachment[an].type = PXE_AttachmentGlobRealElem;
1895 
1896   /* Create Local Attachment */
1897   PXErrorReturn( PXCreateLocAttachGlobRealElem( pg, order, StateRank, (PX_AttachmentGlobRealElem **) &(pg->Attachment[an].data)) );
1898 
1899   /* Set Reader and Write */
1900   pg->Attachment[an].Writer = PXWriteLocAttachGlobRealElem;
1901   pg->Attachment[an].Reader = PXReadLocAttachGlobRealElem;
1902 

Object/home1/jenkins/workspace/ProjectX_Weekly/PX_ARC/relwithdebinfo_gnu/buildnode/reynolds/platforms/relwithdebinfo_gnu/bin/ProjectXExec
FunctionPXInitializeGridData
File/Line/home1/jenkins/workspace/ProjectX_Weekly/PX_ARC/relwithdebinfo_gnu/buildnode/reynolds/src/Grid/PXMeshSize.c:701
Code
0691   ierr = PXAttachSearch( pg, GDName , &iAttach, NULL);
0692   if (ierr== PX_NO_ERROR){
0693     /* we need to destory existin grid data attachment */
0694     PXErrorReturn( PXDestroyAttach( pg, iAttach) );
0695   }
0696   else if (ierr!=PX_SEARCH_NOT_FOUND){
0697     return PXError(ierr);
0698   }
0699 
0700   /* now we need to create an GridData attachment */
0701   PXErrorReturn( PXCreateAttachGlobRealElem( pg, GDName, NULL, 5, &GridData) );
0702   PXErrorReturn( PXAttachGRESetZero( pg, GridData ) );
0703 
0704   /* set data type */
0705   GridData->DataType = PXE_AttachmentDataType_GridData;
0706 

Object/home1/jenkins/workspace/ProjectX_Weekly/PX_ARC/relwithdebinfo_gnu/buildnode/reynolds/platforms/relwithdebinfo_gnu/bin/ProjectXExec
FunctionPXPreProcessBackgroundGridToRemoveDoubleSplineFace
File/Line/home1/jenkins/workspace/ProjectX_Weekly/PX_ARC/relwithdebinfo_gnu/buildnode/reynolds/src/Grid/PXIntersect2d.c:13321
Code
13311     /* split the element */
13312     PXErrorReturn( PXSingleTriangleDoubleSplitLface(pgback, egrp, elem, splitlface, Sedge) );
13313 
13314   }// io
13315 
13316    /* create the node structure for our grid */
13317   if(pg->pgback->Node == NULL)
13318     PXErrorReturn( PXCreateNodeStructure(pg->pgback) );
13319 
13320   /*Grid data*/
13321   PXErrorReturn( PXInitializeGridData(pg->pgback, PXE_False) );
13322 
13323   /* destroy loc attachments */
13324   PXErrorReturn( PXDestroyLocAttachIntNode(pgsurf, SplitNode) );
13325 
13326   /* release memory */

Object/home1/jenkins/workspace/ProjectX_Weekly/PX_ARC/relwithdebinfo_gnu/buildnode/reynolds/platforms/relwithdebinfo_gnu/bin/ProjectXExec
FunctionPXIntersect2DCutGrid
File/Line/home1/jenkins/workspace/ProjectX_Weekly/PX_ARC/relwithdebinfo_gnu/buildnode/reynolds/src/Grid/PXIntersect2d.c:13356
Code
13346   //int oned;
13347   //int twod;
13348   //int nCanonical;
13349   //PX_REAL xglobal[3];
13350   PX_TwoD_Intersect *TwoD=NULL;
13351 
13352   /****************************************************************************************/
13353   /* preproccess to remove trailing edge elements (or elements with two spline faces next to each other */
13354   /****************************************************************************************/
13355   if (RemoveDoubleSplineFace==PXE_True){
13356     PXErrorReturn( PXPreProcessBackgroundGridToRemoveDoubleSplineFace(pg) );
13357   }
13358   /* create the node structure for our grid */
13359   if(pg->pgback->Node == NULL)
13360     PXErrorReturn( PXCreateNodeStructure(pg->pgback) );
13361 

Object/home1/jenkins/workspace/ProjectX_Weekly/PX_ARC/relwithdebinfo_gnu/buildnode/reynolds/platforms/relwithdebinfo_gnu/bin/ProjectXExec
FunctionPXBuildCutGrid2D
File/Line/home1/jenkins/workspace/ProjectX_Weekly/PX_ARC/relwithdebinfo_gnu/buildnode/reynolds/src/Grid/PXCutQuad.c:6717
Code
6707   //PX_REAL *xref = NULL;
6708   //PX_REAL xglobal[3];
6709 
6710   /* seed the random number generator */
6711   PXErrorReturn( PXRandNumGen(2, &rand_num, PXE_True) );
6712 //  PXErrorReturn( PXRandNumGen(0, &rand_num, PXE_False) );
6713 /*   printf("rand_num = %.15e\n",rand_num); */
6714 
6715 
6716   /* intersect our grid and generate our TwoD intersection Structure */
6717   PXErrorReturn( PXIntersect2DCutGrid(pg, &TwoD, MoveToCanonicalFlag, RemoveDoubleSplineFace, PrintCutGridInfoToScreen) );
6718   pg->TwoD = TwoD;
6719 
6720   /* generate the quadrature rules for all the cut elements and faces */
6721 
6722   PXErrorReturn( Generate2DCutQuadRules(pg, TwoD, FaceQuadOrder, ElemQuadOrder, TotalDegreeFlag) );

Object/home1/jenkins/workspace/ProjectX_Weekly/PX_ARC/relwithdebinfo_gnu/buildnode/reynolds/platforms/relwithdebinfo_gnu/bin/ProjectXExec
FunctionReadCutGridInputFiles
File/Line/home1/jenkins/workspace/ProjectX_Weekly/PX_ARC/relwithdebinfo_gnu/buildnode/reynolds/src/PXCDAll.c:1324
Code
1314   PXErrorReturn( PXGetKeyValueBool(pxa->Parameter, "MoveToCanonical", &MoveToCanonicalFlag) );
1315   PXErrorReturn( PXGetKeyValueBool(pxa->Parameter, "CanonicalBasis", &CanonicalBasisFlag) );
1316   PXErrorReturn( PXGetKeyValueBool(pxa->Parameter, "RemoveDoubleSplineFace", &RemoveDoubleSplineFace) );
1317 
1318   /*Get merging flag*/
1319   PXErrorReturn( PXGetKeyValueBool(pxa->Parameter, "MergeFlag", &MergeFlag) );
1320   PXErrorReturn( PXGetKeyValueReal(pxa->Parameter, "CriticalMinVR", &CriticalMinVR) );
1321 
1322   if(Dim == 2){
1323     /* we are now ready to intersect our geometry and generate quadrature rules */
1324     PXErrorReturn( PXBuildCutGrid2D(pg, &TwoD, MoveToCanonicalFlag, CanonicalBasisFlag, RemoveDoubleSplineFace, FaceQuadOrder, ElemQuadOrder, TotalDegreeFlag, PrintCutGridInfoToScreen) );
1325     /* set pointer to TwoD */
1326     pg->TwoD = TwoD;
1327   }
1328   else{
1329     PXErrorReturn(PXOutputFileName(pxa->Parameter, -1, NULL, NULL, "cc3d", cutFileName));

Object/home1/jenkins/workspace/ProjectX_Weekly/PX_ARC/relwithdebinfo_gnu/buildnode/reynolds/platforms/relwithdebinfo_gnu/bin/ProjectXExec
FunctionPXReadInputFile
File/Line/home1/jenkins/workspace/ProjectX_Weekly/PX_ARC/relwithdebinfo_gnu/buildnode/reynolds/src/PXCDAll.c:1710
Code
1700 
1701   /* Copy InputFile to GridFile */
1702   strcpy(GridFile, InputFile);
1703   GridFileType = FileType;
1704 
1705   /*-------------------------*/
1706   /* Check for embedded mesh */
1707   /*-------------------------*/
1708   if ((FileType == PXE_FileType_ebg) || (FileType == PXE_FileType_eb3)) {
1709     /* get the background and surface grids */
1710     PXErrorReturn( ReadCutGridInputFiles(pxa, InputFile) );
1711 
1712     return PX_NO_ERROR;
1713   }
1714 
1715 

Object/home1/jenkins/workspace/ProjectX_Weekly/PX_ARC/relwithdebinfo_gnu/buildnode/reynolds/platforms/relwithdebinfo_gnu/bin/ProjectXExec
FunctionPXReadGridBcFuncFiles
File/Line/home1/jenkins/workspace/ProjectX_Weekly/PX_ARC/relwithdebinfo_gnu/buildnode/reynolds/src/PXInit.c:1310
Code
1300   /*----------------*/
1301   /* Read grid file */
1302   /*----------------*/
1303 
1304   /*  Read grid on process 0 */
1305   if ( myRank == 0 ) {
1306     /* Retrieve input file name */
1307     PXErrorReturn( PXGetKeyValue( pxa->Parameter, "InputFile", InputFile ) );
1308 
1309     /* Read in grid */
1310     PXErrorReturn( PXReadInputFile( pxa, InputFile) );
1311 
1312     /* Check grid validity */
1313     PXErrorReturn( PXCheckGrid( pxa->pg ) );
1314 
1315     /* Get Restart flag */

Object/home1/jenkins/workspace/ProjectX_Weekly/PX_ARC/relwithdebinfo_gnu/buildnode/reynolds/platforms/relwithdebinfo_gnu/bin/ProjectXExec
FunctionPXInitializePre
File/Line/home1/jenkins/workspace/ProjectX_Weekly/PX_ARC/relwithdebinfo_gnu/buildnode/reynolds/src/PXRunSolver.c:255
Code
0245   PXErrorReturn( PXDestroyParameter( &KnobFileParameter) );
0246 
0247   /* Initialize EqnSetStruct */
0248   PXErrorReturn( PXInitEqnSetStruct( pxa->Parameter, pxa->pRegionAttribute, &(pxa->EqnSetStruct) ) );
0249 
0250   /* Initialize Equation Set Entry Point Structure */
0251   PXErrorReturn( PXFillEqnSetEntryStruct( pxa->EqnSetStruct,
0252             pxa->EqnSetEntryStruct ) );
0253 
0254   /* Read grid, .bc file, and .func file (marked for change) */
0255   PXErrorReturn( PXReadGridBcFuncFiles( pxa ) );
0256 
0257   /* Initialize Polynomial precalc struct */
0258   /* Only proc0 reads the Grid in PXReadGridBcFuncFiles, but
0259      pg->Dim is needed by ALL processors, so Bcast it
0260 

Object/home1/jenkins/workspace/ProjectX_Weekly/PX_ARC/relwithdebinfo_gnu/buildnode/reynolds/platforms/relwithdebinfo_gnu/bin/ProjectXExec
Functionmain
File/Line/home1/jenkins/workspace/ProjectX_Weekly/PX_ARC/relwithdebinfo_gnu/buildnode/reynolds/src/PXRunSolver.c:956
Code
0946     PXPrintf("Where casename is the name of the job file.\n");
0947     PXPrintf("\n");
0948     return PX_READWRITE_ERROR;
0949   }
0950 
0951 #ifdef PX_SHADOW
0952   printf("\nWARNING: You Are Running With Shadow Basis Turned On.\n\n");
0953 #endif
0954 
0955   /* Perform non-repeated initializations */
0956   PXErrorReturn( PXInitializePre( JobFile, &pxa ) );
0957 #ifdef PX_TIMING
0958   PXBarrier();
0959   c1=PXclock();
0960   PXPrintf("Time : (InitializePre) = %f\n",  c1 - c0 );
0961 #endif