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Started by upstream project "SANS_Commit" build number 9788 originally caused by: Started by remote host 18.18.33.14 Running as SYSTEM [EnvInject] - Loading node environment variables. Building remotely on macys_VM in workspace /Users/jenkins/workspace/SANS_Commit/builddir/release_clang/buildnode/macys_VM [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Done The recommended git tool is: NONE using credential 3614a4cf-01de-4393-97de-73734b7dd5a2 Fetching changes from the remote Git repository Pruning obsolete local branches > JGit fetch # timeout=10 Verifying host key for acdl.mit.edu using /Users/jenkins/.ssh/known_hosts Merging Revision 9561034abcc98dd1e0792abcdea8382106b0a9b5 (refs/remotes/acdl/mbottot/develop) to acdl/develop, UserMergeOptions{mergeRemote='acdl', mergeTarget='develop', mergeStrategy='DEFAULT', fastForwardMode='FF'} Checking out Revision 9561034abcc98dd1e0792abcdea8382106b0a9b5 (HEAD, acdl/mbottot/develop, acdl/develop) Commit message: "Add cubic Hermite basis functions for triangles" Using 'Changelog to branch' strategy. The recommended git tool is: NONE using credential 3614a4cf-01de-4393-97de-73734b7dd5a2 The recommended git tool is: NONE using credential 3614a4cf-01de-4393-97de-73734b7dd5a2 [GitCheckoutListener] Recording commits of 'git ssh://jenkins@acdl.mit.edu/home/svnroot/SANSproto' [GitCheckoutListener] Found previous build 'SANS_Commit/builddir=release_clang,buildnode=macys_VM #9787' that contains recorded Git commits [GitCheckoutListener] -> Starting recording of new commits since 'ebf3317' [GitCheckoutListener] -> Single parent commit found - branch is already descendant of target branch head [GitCheckoutListener] -> Using head commit '9561034' as starting point [GitCheckoutListener] -> Recorded 200 new commits [GitCheckoutListener] -> Git commit decorator could not be created for SCM 'hudson.plugins.git.GitSCM@1bda0a87' [macys_VM] $ /bin/bash -xe /var/folders/qk/9zkf0syn149fvhw9mh7hgd5w0000gp/T/jenkins9931490668369703376.sh + [[ macys_VM == *\v\i\g\g\e\n* ]] + /bin/bash -ex /Users/jenkins/workspace/SANS_Commit/builddir/release_clang/buildnode/macys_VM/scripts/jenkins/SANS_Commit.sh + cd /Users/jenkins/workspace/SANS_Commit/builddir/release_clang/buildnode/macys_VM + echo 'Removing any lingering untracked files' Removing any lingering untracked files ++ git ls-files --others --exclude=build --exclude=external + [[ release_clang == *\c\o\v\e\r\a\g\e* ]] + source /Users/jenkins/workspace/SANS_Commit/builddir/release_clang/buildnode/macys_VM/scripts/jenkins/copy_external.sh +++ hostname ++ [[ macys-VM == \r\e\y\n\o\l\d\s* ]] +++ hostname ++ [[ macys-VM == \m\a\c\y\s* ]] ++ cp /Users/jenkins/util/SANSexternal/tetgen1.5.0.tar.gz /Users/jenkins/util/SANSexternal/tetgen1.6.0.tar.gz /Users/jenkins/util/SANSexternal/triangle.zip /Users/jenkins/workspace/SANS_Commit/builddir/release_clang/buildnode/macys_VM/external/ + cmakedir=/Users/jenkins/workspace/SANS_Commit/builddir/release_clang/buildnode/macys_VM/build/release_clang + mkdir -p /Users/jenkins/workspace/SANS_Commit/builddir/release_clang/buildnode/macys_VM/build/release_clang + cd /Users/jenkins/workspace/SANS_Commit/builddir/release_clang/buildnode/macys_VM/build/release_clang + mkdir -p /Users/jenkins/workspace/SANS_Commit/builddir/release_clang/buildnode/macys_VM/build/boosttest + rm -rf '/Users/jenkins/workspace/SANS_Commit/builddir/release_clang/buildnode/macys_VM/test/unit/tmp/*' + rm -rf '/Users/jenkins/workspace/SANS_Commit/builddir/release_clang/buildnode/macys_VM/test/system/tmp/*' + rm -f '/Users/jenkins/workspace/SANS_Commit/builddir/release_clang/buildnode/macys_VM/build/boosttest/*.xml' + rm -f /Users/jenkins/workspace/SANS_Commit/builddir/release_clang/buildnode/macys_VM/build/coverage.xml + [[ release_clang == *\c\o\v\e\r\a\g\e* ]] + CMAKE_ARGS=-DUSE_COTIRE=OFF ++ hostname + [[ macys-VM == \r\e\y\n\o\l\d\s ]] ++ hostname + [[ macys-VM != \m\a\c\y\s\.\m\i\t\.\e\d\u ]] + CMAKE_ARGS='-DUSE_COTIRE=OFF -DVERA_ERROR=ON' + CMAKE_ARGS='-DUSE_COTIRE=OFF -DVERA_ERROR=ON -DUSE_CCACHE=ON -DCCACHE_MAX_SIZE=10G -DCCACHE_CONFIGPATH=/Users/jenkins/SANS_ccache/builddir/release_clang/buildnode/macys_VM' + source /Users/jenkins/workspace/SANS_Commit/builddir/release_clang/buildnode/macys_VM/scripts/jenkins/jenkins_env.sh ++ shopt -s nocasematch +++ pwd ++ dir=/Users/jenkins/workspace/SANS_Commit/builddir/release_clang/buildnode/macys_VM/build/release_clang +++ basename /Users/jenkins/workspace/SANS_Commit/builddir/release_clang/buildnode/macys_VM/build/release_clang ++ builddir=release_clang ++ export AFLR_VERSION=10.17.5 ++ AFLR_VERSION=10.17.5 ++ CAS_VERSION=7.7.0 +++ hostname ++ [[ macys-VM == *\r\e\y\n\o\l\d\s* ]] +++ hostname ++ [[ macys-VM == *\m\a\c\y\s* ]] ++ export PATH=/usr/local/bin:/usr/local/sbin:/usr/local/opt/python/libexec/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ PATH=/usr/local/bin:/usr/local/sbin:/usr/local/opt/python/libexec/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export LAPACK_DIR=/usr/local/opt/lapack/ ++ LAPACK_DIR=/usr/local/opt/lapack/ ++ export ESP_DIR=/Users/jenkins/util/ESP/EngSketchPad ++ ESP_DIR=/Users/jenkins/util/ESP/EngSketchPad ++ export CAS_DIR=/Users/jenkins/util/ESP/OpenCASCADE-7.7.0 ++ CAS_DIR=/Users/jenkins/util/ESP/OpenCASCADE-7.7.0 ++ export AFLR_DIR=/Users/jenkins/util/AFLR/aflr_lib_10.17.5 ++ AFLR_DIR=/Users/jenkins/util/AFLR/aflr_lib_10.17.5 +++ ls -d /Users/jenkins/util/PETSc/petsc/install_dir ++ export PETSC_DIR=/Users/jenkins/util/PETSc/petsc/install_dir ++ PETSC_DIR=/Users/jenkins/util/PETSc/petsc/install_dir ++ export PARMETIS_DIR=/Users/jenkins/util/parmetis/parmetis-4.0.3/install ++ PARMETIS_DIR=/Users/jenkins/util/parmetis/parmetis-4.0.3/install ++ export PATH=/Users/jenkins/util/fefloa/bin:/usr/local/bin:/usr/local/sbin:/usr/local/opt/python/libexec/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ PATH=/Users/jenkins/util/fefloa/bin:/usr/local/bin:/usr/local/sbin:/usr/local/opt/python/libexec/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export Boost_NO_SYSTEM_PATHS=OFF ++ Boost_NO_SYSTEM_PATHS=OFF ++ export ASAN_OPTIONS=detect_odr_violation=0 ++ ASAN_OPTIONS=detect_odr_violation=0 ++ env + source /Users/jenkins/workspace/SANS_Commit/builddir/release_clang/buildnode/macys_VM/scripts/jenkins/cmake_jenkins.sh -DXML_BOOST_CHECK=ON -DUSE_LAPACK=ON -DUSE_COTIRE=OFF -DVERA_ERROR=ON -DUSE_CCACHE=ON -DCCACHE_MAX_SIZE=10G -DCCACHE_CONFIGPATH=/Users/jenkins/SANS_ccache/builddir/release_clang/buildnode/macys_VM +++ git rev-parse --show-toplevel ++ WORKSPACE=/Users/jenkins/workspace/SANS_Commit/builddir/release_clang/buildnode/macys_VM +++ uname -a ++ [[ Darwin macys-VM 20.6.0 Darwin Kernel Version 20.6.0: Thu Sep 29 20:15:11 PDT 2022; root:xnu-7195.141.42~1/RELEASE_X86_64 x86_64 == \D\a\r\w\i\n* ]] ++ CMAKEARGS=' -DMPIEXEC_MAX_NUMPROCS=2' +++ hostname ++ [[ macys-VM == \r\e\y\n\o\l\d\s ]] +++ hostname ++ [[ macys-VM == \m\a\c\y\s* ]] ++ CMAKEARGS=' -DMPIEXEC_MAX_NUMPROCS=2 -DUSE_TETGEN=ON -DUSE_TRIANGLE=ON' ++ cmake -DBoost_NO_SYSTEM_PATHS=OFF -DXDIR_DEFAULT=ON -DUI_CAPSAIM=ON -DUI_OPENCSM_UDF=ON -DMPIEXEC_MAX_NUMPROCS=2 -DUSE_TETGEN=ON -DUSE_TRIANGLE=ON -DXML_BOOST_CHECK=ON -DUSE_LAPACK=ON -DUSE_COTIRE=OFF -DVERA_ERROR=ON -DUSE_CCACHE=ON -DCCACHE_MAX_SIZE=10G -DCCACHE_CONFIGPATH=/Users/jenkins/SANS_ccache/builddir/release_clang/buildnode/macys_VM /Users/jenkins/workspace/SANS_Commit/builddir/release_clang/buildnode/macys_VM CMake Deprecation Warning at CMakeLists.txt:3 (CMAKE_MINIMUM_REQUIRED): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument <min> value or use a ...<max> suffix to tell CMake that the project does not need compatibility with older versions. _____ ___ _ _______ / ___// | / | / / ___/ \__ \/ /| | / |/ /\__ \ ___/ / ___ |/ /| /___/ / /____/_/ |_/_/ |_//____/ Solution Adaptive Numerical Simulator -- Found Boost: /usr/local/include (found suitable version "1.82.0", minimum required is "1.50") found components: unit_test_framework iostreams filesystem system mpi serialization regex -- Found Boost: /usr/local/include (found version "1.82.0") found components: unit_test_framework iostreams filesystem system mpi serialization python311 numpy311 regex -- Found Accelerate BLAS -- Could NOT find TETGEN (missing: TETGEN_LIBRARIES TETGEN_INCLUDE_DIRS) -- Checking for /Users/jenkins/workspace/SANS_Commit/builddir/release_clang/buildnode/macys_VM/external/tetgen1.6.0.tar.gz -- Using /Users/jenkins/workspace/SANS_Commit/builddir/release_clang/buildnode/macys_VM/external/tetgen1.6.0.tar.gz -- Could NOT find AVRO (missing: AVRO_LIBRARY) -- Checking for /Users/jenkins/workspace/SANS_Commit/builddir/release_clang/buildnode/macys_VM/external/triangle.zip -- Using /Users/jenkins/workspace/SANS_Commit/builddir/release_clang/buildnode/macys_VM/external/triangle.zip -- Could NOT find SEACAS (missing: SEACAS_LIBRARIES SEACAS_INCLUDE_DIRS) -- Please install qcachegrind for graphical profiling. -- Please install massif-visualizer for graphical heap memory usage. ############################################# # # SANS configuration: # # CMAKE_BUILD_TYPE: Release # CMAKE_INSTALL_PREFIX: /usr/local # CMAKE_CXX_COMPILER name: Clang 12.0.5.12050022 on platform Darwin x86_64 # CMAKE_CXX_COMPILER path: /usr/bin/clang++ # # CMAKE_CXX_IMPLICIT_INCLUDE_DIRECTORIES: # # /Library/Developer/CommandLineTools/SDKs/MacOSX12.1.sdk/usr/include/c++/v1 # /Library/Developer/CommandLineTools/usr/lib/clang/12.0.5/include # /Library/Developer/CommandLineTools/SDKs/MacOSX12.1.sdk/usr/include # /Library/Developer/CommandLineTools/usr/include # # CMAKE_CXX_IMPLICIT_LINK_DIRECTORIES: # # /Library/Developer/CommandLineTools/SDKs/MacOSX12.1.sdk/usr/lib # # Compiler flags used for this build: # # CMAKE_CXX_FLAGS: -std=c++11 -Wall -Wstrict-aliasing # -Wnon-virtual-dtor -pedantic -Wno-variadic-macros # -Wno-#pragma-messages -Wno-undefined-var-template -fstrict-aliasing # -fPIC # # CMAKE_CXX_FLAGS_RELEASE: -O3 -funroll-loops # # Required dependencies: # # EGADS -----------> Met with existing library: # Include Directories: # /Users/jenkins/util/ESP/EngSketchPad/include # Libraries: # /Users/jenkins/util/ESP/EngSketchPad/lib/libegads.dylib # # Boost -----------> Met with existing library: # Include Directories: # /usr/local/include # Libraries: # /usr/local/lib/libboost_unit_test_framework-mt.dylib # /usr/local/lib/libboost_iostreams-mt.dylib # /usr/local/lib/libboost_filesystem-mt.dylib # /usr/local/lib/libboost_system-mt.dylib # /usr/local/lib/libboost_mpi-mt.dylib # /usr/local/lib/libboost_serialization-mt.dylib # /usr/local/lib/libboost_python311-mt.dylib # /usr/local/lib/libboost_numpy311-mt.dylib # /usr/local/lib/libboost_regex-mt.dylib # # PYTHON ----------> Met with existing library: # Include Directories: # /usr/local/opt/python@3.11/Frameworks/Python.framework/Versions/3.11/include/python3.11 # Libraries: # /usr/local/opt/python@3.11/Frameworks/Python.framework/Versions/3.11/lib/libpython3.11.dylib # # NLOPT -----------> Met with existing library: # Include Directories: # /usr/local/include # Libraries: # /usr/local/lib/libnlopt.dylib # # SUITESPARSE -----> Met with existing library: # Include Directories: # /usr/local/include # Libraries: # /usr/local/lib/libumfpack.dylib # /usr/local/lib/libamd.dylib # /usr/local/lib/libcholmod.dylib # /usr/local/lib/libcamd.dylib # /usr/local/lib/libcolamd.dylib # /usr/local/lib/libccolamd.dylib # /usr/local/lib/libsuitesparseconfig.dylib # # BLAS ------------> Met with existing library: # Include Directories: # Libraries: # /Library/Developer/CommandLineTools/SDKs/MacOSX12.1.sdk/System/Library/Frameworks/Accelerate.framework # # METIS -----------> Met with existing library: # Include Directories: # /usr/local/include # Libraries: # /usr/local/lib/libmetis.dylib # # PARMETIS --------> Met with existing library: # Include Directories: # /Users/jenkins/util/parmetis/parmetis-4.0.3/install/include # Libraries: # /Users/jenkins/util/parmetis/parmetis-4.0.3/install/lib/libparmetis.a # # Optional dependencies: # # AFLR ------------> ON. -- Met with existing library: # Include Directories: # /Users/jenkins/util/AFLR/aflr_lib_10.17.5/src # Libraries: # /Users/jenkins/util/AFLR/aflr_lib_10.17.5/MacOSX-x86-64/lib/libanbl3.a # /Users/jenkins/util/AFLR/aflr_lib_10.17.5/MacOSX-x86-64/lib/libbl1.a # /Users/jenkins/util/AFLR/aflr_lib_10.17.5/MacOSX-x86-64/lib/libaflr4.a # /Users/jenkins/util/AFLR/aflr_lib_10.17.5/MacOSX-x86-64/lib/libaflr3.a # /Users/jenkins/util/AFLR/aflr_lib_10.17.5/MacOSX-x86-64/lib/libaflr2c.a # /Users/jenkins/util/AFLR/aflr_lib_10.17.5/MacOSX-x86-64/lib/libice3.a # /Users/jenkins/util/AFLR/aflr_lib_10.17.5/MacOSX-x86-64/lib/libice2.a # /Users/jenkins/util/AFLR/aflr_lib_10.17.5/MacOSX-x86-64/lib/libotb.a # /Users/jenkins/util/AFLR/aflr_lib_10.17.5/MacOSX-x86-64/lib/libdftr2.a # /Users/jenkins/util/AFLR/aflr_lib_10.17.5/MacOSX-x86-64/lib/libdftr3.a # /Users/jenkins/util/AFLR/aflr_lib_10.17.5/MacOSX-x86-64/lib/libsurf_auto_cpp.a # /Users/jenkins/util/AFLR/aflr_lib_10.17.5/MacOSX-x86-64/lib/libsurf_auto.a # /Users/jenkins/util/AFLR/aflr_lib_10.17.5/MacOSX-x86-64/lib/libaflr4.a # /Users/jenkins/util/AFLR/aflr_lib_10.17.5/MacOSX-x86-64/lib/libdgeom.a # /Users/jenkins/util/AFLR/aflr_lib_10.17.5/MacOSX-x86-64/lib/librec3.a # /Users/jenkins/util/AFLR/aflr_lib_10.17.5/MacOSX-x86-64/lib/librec2.a # /Users/jenkins/util/AFLR/aflr_lib_10.17.5/MacOSX-x86-64/lib/libug.a # /Users/jenkins/util/AFLR/aflr_lib_10.17.5/MacOSX-x86-64/lib/libug3.a # /Users/jenkins/util/AFLR/aflr_lib_10.17.5/MacOSX-x86-64/lib/libug2.a # /Users/jenkins/util/AFLR/aflr_lib_10.17.5/MacOSX-x86-64/lib/libuvmap.a # /Users/jenkins/util/AFLR/aflr_lib_10.17.5/MacOSX-x86-64/lib/libegen.a # /Users/jenkins/util/AFLR/aflr_lib_10.17.5/MacOSX-x86-64/lib/libqtb.a # /Users/jenkins/util/AFLR/aflr_lib_10.17.5/MacOSX-x86-64/lib/libug_gq.a # /Users/jenkins/util/AFLR/aflr_lib_10.17.5/MacOSX-x86-64/lib/libotb.a # /Users/jenkins/util/AFLR/aflr_lib_10.17.5/MacOSX-x86-64/lib/libug_mp.a # # AVRO ------------> OFF -- Could not find library. # # CAPS ------------> ON. -- Met with existing library: # Include Directories: # /Users/jenkins/util/ESP/EngSketchPad/include # Libraries: # /Users/jenkins/util/ESP/EngSketchPad/lib/libaimUtil.a # /Users/jenkins/util/ESP/EngSketchPad/lib/libocsm.dylib # /Users/jenkins/util/ESP/EngSketchPad/lib/libudunits2.dylib # # LAPACK ----------> ON. -- Met with existing library: # Libraries: # /Library/Developer/CommandLineTools/SDKs/MacOSX12.1.sdk/System/Library/Frameworks/Accelerate.framework # # MKL -------------> OFF. # # PETSC -----------> ON. -- Met with existing library: # Include Directories: # /Users/jenkins/util/PETSc/petsc/install_dir/include # Libraries: # /Users/jenkins/util/PETSc/petsc/install_dir/lib/libpetsc.dylib # # REFINE ----------> OFF. # # SEACAS ----------> OFF -- Could not find library. # # TECIO -----------> OFF. # # TETGEN ----------> ON. -- Met with internal build. -- Could not find library. # Include Directories: # /Users/jenkins/workspace/SANS_Commit/builddir/release_clang/buildnode/macys_VM/build/release_clang/libtetgen-prefix/src/libtetgen # Libraries: # /Users/jenkins/workspace/SANS_Commit/builddir/release_clang/buildnode/macys_VM/build/release_clang/libtetgen-prefix/src/libtetgen-build/libtet.a # # TRIANGLE --------> ON. -- Met with internal build. -- Could not find library. # Include Directories: # /Users/jenkins/workspace/SANS_Commit/builddir/release_clang/buildnode/macys_VM/build/release_clang/libtriangle-prefix/src/libtriangle # Libraries: # /Users/jenkins/workspace/SANS_Commit/builddir/release_clang/buildnode/macys_VM/build/release_clang/libtriangle-prefix/src/libtriangle/libtriangle.a # # MPI -------------> ON. -- Met with existing library: # Include Directories: # /usr/local/Cellar/open-mpi/4.1.5/include # Libraries: # /usr/local/Cellar/open-mpi/4.1.5/lib/libmpi.dylib # mpiexec: # /usr/local/bin/mpiexec # ############################################# -- Configuring done (25.5s) -- Generating done (79.1s) -- Build files have been written to: /Users/jenkins/workspace/SANS_Commit/builddir/release_clang/buildnode/macys_VM/build/release_clang real 2m3.967s user 0m36.376s sys 0m42.972s + cp /Users/jenkins/workspace/SANS_Commit/builddir/release_clang/buildnode/macys_VM/scripts/jenkins/Makefile.parallel . + nproc=2 + [[ release_clang == *\i\n\t\e\l* ]] + [[ release_clang == *\c\o\v\e\r\a\g\e* ]] + make -f Makefile.parallel depends make libmeshb > libmeshb.out make libtriangle > libtriangle.out make libtetgen > libtetgen.out make libtetgen Performing patch step for 'libtetgen' patching file predicates.cxx Reversed (or previously applied) patch detected! Assume -R? [n] Apply anyway? [n] Skipping patch. 2 out of 2 hunks ignored -- saving rejects to file predicates.cxx.rej make[4]: *** [libtetgen-prefix/src/libtetgen-stamp/libtetgen-patch] Error 1 make[3]: *** [CMakeFiles/libtetgen.dir/all] Error 2 make[2]: *** [CMakeFiles/libtetgen.dir/rule] Error 2 make[1]: *** [libtetgen] Error 2 real 0m12.348s user 0m12.113s sys 0m0.217s make: *** [libtetgen] Error 1 Build step 'Execute shell' marked build as failure [GNU C Compiler (gcc)ClangIntel Compiler (C, Fortran)Vera++] Skipping execution of recorder since overall result is 'FAILURE' INFO: Processing BoostTest-1.x (default) INFO: [BoostTest-1.x (default)] - No test report file(s) were found with the pattern 'build/boosttest/*.xml' relative to '/Users/jenkins/workspace/SANS_Commit/builddir/release_clang/buildnode/macys_VM' for the testing framework 'BoostTest-1.x (default)'. Did you enter a pattern relative to (and within) the workspace directory? Did you generate the result report(s) for 'BoostTest-1.x (default)'?" WARNING: All test reports are empty. INFO: Check 'Failed Tests' threshold. INFO: Check 'Skipped Tests' threshold. [Checks API] No suitable checks publisher found. INFO: Setting the build status to SUCCESS [Coverage] Skipping execution of coverage recorder since overall result is 'FAILURE' Finished: FAILURE