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Changes
- Added H tensor output from Euler2D
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- Working on new AFLR4 interface
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- some tweaks
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- tweaks
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- Debugging AFLR4
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- removing erroneous refine things
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- getting acdl develop CMakeIncludes
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- more tweaks
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- moving to hypersonic
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- change to let MPI build the directories just in time
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- too many white lines
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- to run on devastator
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- tweaks for hypersonic
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- Nodal Error estimate. Takes the average of the attached nodes, the
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- hacking about trying Nodal Estimation
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- typo/bug maybe?
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- another one
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- pre merge
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- Multiscale metric case, debugging printing a continuous Mach number
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- pre merge
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- forgot to assert the basis was the same for the two fields
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- projects from the Dfld basis onto the Cfld basis so accumulating to the
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- pre merge
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- seems to write Mach number solbs now
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- moving to hypersonic
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- a fix to go to hypersonic
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- weird tecplot bug
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- compiles again, moving to devastator
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- MultiScaleMetric for transfering to NASA
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- moving to laptop
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- transfering to Dev
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- moving to devastator to get EPIC
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- --ammend
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- moving to devastator
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- transfering to dev
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- moving to hyper
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- pre merge
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- tweak
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- added output dump info to MultiScaleMetric case, should be ready to
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- making MultiScale and MOESS cases consistent and ready for hypersonic
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- tweaks back to labbox
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- Updates for edge based AFLR4 calculations
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- Backwards facing step unit grid
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- pre merge commit
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- backwards step cases
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- removed SolverInterface_Nodal_Galerkin, it ended up only a tiny tweak
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- added options for tweaking order of the tau stabilization. Can force the
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- added Arthur's version of Experimental, copied from his email
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- preprocessor defined version with volume weighting, ought to remove this
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- forgot the CMakeLists
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- DG case updates
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- nodal test passes again
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- pre merge
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- moving back to nia
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- moving to dev
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- tweaks to case
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- pre merge
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- moving to dev
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- pre merge
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- added an argument for fixing the order used in the calculation of tau.
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- mod solution fcn
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- moving to dev
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- moving to dev
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- 2D refine interface, it doesn't work yet
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- hacks to move to NASA box
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- went back to nNodes for advective stabilization
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- changed to all take order of stabilization as argument to stab
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- diff got lost in the merge, and a line too long
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- forgot the refine preprocessor bits, and a curly brace was one space
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- vera fixes
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- forgot another one
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- tweaks for jenkins
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- curly braces again
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- fixed coarsening node numbering bug, added a unit test to guard it
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- forgot some things
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- fixed warning about unread data
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- modified stabilized output, reverted to node based advection
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- sandbox, added high order quads to PX mesh reader, fixed periodic bug in
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- Removed tabs from files in previous commit.
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- stabilization consistent and passing unit tests. updated nitsche
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- Fixed curly brackets formatting in previous commit's files.
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- Minor cleanup
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- Fixed continuous-param assumption for fluxViscous
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- Unit tests passing with param bug fix
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- Fixed a nightly warning
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- 1D spacetime shock problems
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- Formatting errors
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- More bug fix
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- Adding hinge computation from CSM. Other minor cleanup.
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- testing with avro
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- Forward facing step unit grid and spacetime euler2d artificial viscosity
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- Turned off some debug output
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- PETSc option for spacetime forward facing step
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- Work towards Zombie DOFs
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- Updates for LIP solver to use hinge lines
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- Fixed inconsistency in LIPSolver sensitivity
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- Fixed PETSc setup in step case
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- Unit test for forward facing step grid
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- New Euler BC unit tests
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- Fixed index bug for Zombies
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- Tweak for building tetgen with MSYS
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- Added system call option for refine
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- Maybe BDF case for forward facing step
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- Updates for calling refine with a system call
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- More refine fixes
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- One more refine fix. And some sansLIPAIM fixes.
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- Missing include
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- Correct missing include
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- Minor fix
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- Made the volume generator option for sansLIP.
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- Default meshesr for sansLIP
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- Added Lagrange-basis duct mesh creator and corresponding sandbox test
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- Working on a bug in sansLIPAIM
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- sansLIPAIM fix
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- Fixed sansLIP data transfer with hinge bodies
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- Fixed formatting errors.
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- moess to minimize distance between implied metric and target field
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- move to new branch
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- a few (very simple) pentatope things
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- metric optimisation to match target metric
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- delete bad stuff
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- Fixed more formatting errors.
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- Renamed duct mesh generator header and source files and edited
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- testing with metric optimizer, will definitely fail jenkins
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- forgot to remove cmake add_subdir for my sandbox, will gitignore
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- vera fixes, missing file
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- try to fix invalid initializations
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- Renamed the duct mesher file mentioned inside CMakeLists.txt
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- removed the rfld dumping as it doesn't work in parallel
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- changed monomial to accept reals, added a 1D L2Projection toy
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- changed monomial to accept reals, added a 1D L2Projection toy
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- sandbox edits
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- revert sandbox not working
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- Added Pseudo Time solving to DGAdvective Smoothbump toy.
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- Cleaned up duct mesh generator files.
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- Added arc mesh generator and corresponding toy test file. Updated
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- Various fixes for LIP AIM
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- Relaxed unit test timing a bit more
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- relax tol
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- Renamed arc mesh generator files to annulus. Minor changes elsewhere.
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- Minor change.
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- Minor fixes.
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- branch change
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- Removed non-determinstic wake intersection
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- Fixed compile errors
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- Another compile problem
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- Undo
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- Lots of work towards Zombies
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- Forgot a file
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- Fixed compile error
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- Added sansLIPAIM to jenkins compile
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- Hopefully fixed local2native DG indexing
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- Fix for zombie counting
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- Higher-resolution ShuOsher case
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- added order and power runtime flags
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- tweaks to case and considering a different stabilization
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- Q1D Adaptive Giles Pierce nozzle with p-sequencing
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- Added supersonic outflow BC
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- Created grid and test case for adaptive 2D Giles Pierce nozzle
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- working on a new tau and moving some stuff to dev
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- allowing command line spec
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- VMS seems to be adapting properlygit status!
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- conflicts
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- typo
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- changing back to nDOF
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- testing theory on linear basis for tau
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- reverting to develop
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- tool to guide mesh generator towards target metric from implied one
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- changes to Experimental2, gives p order scaling stabilization now
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- changes to Experimental2, gives p order scaling stabilization now
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- Changes to help converge forward facing step
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- DG field now includes zombies
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- Minor fix
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- tweaks
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- fix to SolverInterface, and changes to NSFlat Plate
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- using Exp not Exp2 as missing some instanations for LinAlg.
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- Added missing include
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- Need to remove LocalSolve2D_DGBR2_Triangle_AD_btest
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- Proper parallel DGBR2 LocalSolve
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- Reduce runtime for ElementLocalSolve3D_DGBR2_Tet_AD_btest
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- Reduced number of partitions for
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- Various fixes
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- Added libMeshb solution reader
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- Reworked multiscale metric so it mostly works
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- Minor fixes
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- Fix link error. Zero out Mach number of walls for MultiScale metric.
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- Tweaks to DeltaWing MultiScale
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- Typo
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- Fixed bug in FunctionalBoundaryTrace_DGBR2 related to new partitioning
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- Fixed some bugs related to new partitioning
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- Forgot some steps in the fixes
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- updated sansLIPAIM with consistent function signatures
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- Reworking CG DOF ordering
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- Added spactime diffusion option for 2D Euler with artificial viscosity
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- Updated test for new PDEEuler2D with artificial viscosity interface
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- Updated 2D CG edge numbering
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- Added back working spacetime diffusion to euler in artificial viscosity
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- Updated 1D euler with optional spacetime diffusion
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- Changed Galerkin tag to DGAdv
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- Added asserts to stop bad parameters using for spacetime
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- Formatting errors
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- Completely reworking CG field constructions
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- More work on new CG Field creation
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- Hopefully fixed intel error by extending boost::mpl::vector
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- NavierStokes2D with artificial viscosity
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- Formatting issues
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- Missed a few files
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- Formatting fix
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- Formatting fix
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- Formatting fix
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- Complete rework of CG field construction. Works in parallel now. Removed
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- Fixed some warnings and compile errors
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- Missing include
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- More field initializations
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- Slight efficiency improvement for HDG adjoint calculation
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- Fixed another uninitialized field
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- CG works in parallel!
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- CG was missing boundary elements in parallel. Now it works!
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- Fixed warning
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- Added evalReferenceCoordinateHessian for 3D. More unit testing for
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- Forgot some DOFs
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- Relaxed tolerances
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- Local solve updates
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- Modified tolerances
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- Remove print statements
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- Updated 1D local solve and removed depricated test
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- Tecplog xfld dump now includes node+cell ranks
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- Include Galerkin integrands for DGBR2 boundary output functionals
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- Fixed the fix
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- Missing include
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- fixing nightly warning
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- changed the essential bc application to use ghost boundaries. No longer
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- Fix for DGBR2 boundary output functionals
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- BCEuler has vector size greater than 20
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- 2D DGAdvective error estimate order test
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- Changed Nitche to Cb = 2.0 for AD CG P3 adaptation
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- Fixing errors
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- changed Dual to Dual2 in anticipation of the new local solve
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- updated unit tests to use the ghost boundary trace freezing rule
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- preparations for the alternative constructor
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- cleanup of implied metric limiter
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- vera fixes
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- Fixing errors
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- didn't mean to include a certain test
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- switching back to Dual notation, splitting the EdgeLocal and
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- moved to ptrs in the base class, dry run for elemental version
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- Topology instantiations and avro cmake updates
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- Dummy push
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- Fixed AVRO cmake typo. Minor format cleanup for limited metric.
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- refactor to move most member variables into the base class XField_Common
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- Forgot a file, and all non edge specific methods are now buried in the
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- changed a template setup and added a first Element Local test
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- Starting work on AFLR 16.26.2
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- new splitting routine compiles
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- moved the split function up to Common level, made it more sophisticated
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- Expanded the 3D split and changed the arguments for the 1D split to
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- forgot you can't write to tmp/
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- find and replace bug
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- typo in file name
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- forgot test directory
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- commented out some impossible branches in 2D, and added another unsplit
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- unit tests
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- ElementArea now calls the same actual split method as edge local
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- added a copy constructor test, working on testing splits for Element
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- a very first element local split test
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- moved some memory outside of loops so it doesn't get created and
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- unit tests for adding in new cellgroup 1 elements and traces, looks like
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- unit test involving reattaching a cell group 1 boundary element
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- Adding RK Riemann Problem
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- Various fixes to get NS GLS working in 3D
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- Updated pyrite files for nightly testing
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- Set longer timeout for specific long running unit tests
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- caught the memory leak, and a bunch of instantiations and fixes and unit
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- forgot a thing
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- style check
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- Added promote_Surreal for ParamTuple
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- fixes:
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- file renaming switches
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- forgot to remove print out.
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- added catch for ghost boundaries
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- forgot file write
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- missed a thing
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- Don't do parallel solves yet with the new ElementDualLocal solves
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- Added TimeOut BC for spacetime that is distinct from BCNone
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- some 4d stuff
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- placeholders for unit tests
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- Start working on latest AFLR4
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- Many cppcheck fixes, but not all
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- Fixed compile error
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- caught a ghost boundary bug, now have different bugs in parallel
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- More work on latest AFLR4, does not work yet
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- Updated Partiioning for CG element dual solves
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- Relaxed tolerances on local solves
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- Nightly fixes
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- Upgraded PETSc version
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- Fixed PETSc version test
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- changed to allow Real indices for monomial
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- added ghost tests, turned off the split ghost tests, as we don't have a
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- Many AFLR4 updates
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- changed some comments
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- vim put some actual tabs in... and changing some odd pieces
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- Another try
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- warning about unset data
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- Added 1D AR test file
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- relaxing tolerance
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- trace to cell reference coordinates (plus matlab script),
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- trace to cell reference coordinates (plus matlab script),
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- Added a tecplot dump for EGTessModel
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- element topology tracks number of permutations so possible trace
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- More debugging outputs
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- Fixes so boost xml files are correctly dumped
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- Fixed system tests for coverage
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- Allowed for longer run times on specific tests
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- One more tweak for coverage of system tests
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- Typo
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- Missed one more
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- Forgot to add files
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- One more typo
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- A slightly different version
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- Minor fix
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- Fixed find and replace mistake
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- fixed a few bugs with trace-to-cell ref coordinates
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- hasFluxConservative is noe hasFluxAdvectiveTime
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- xfield and element definitions for pentatopes
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- spacetime field and element files
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- tolerance
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- relaxed again
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- field and xfield instantiations in 4d
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- map between quadrature points of different trace orienations (in 4d)
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- lingering space
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- unused variables...dont worry i'll unit test these functions
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- uninit fixes
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- 2D Riemann problem now uses surrogates
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- A box grid with two ghost boundaries
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- added split tests with ghost boundaries attached to cell group 1, and
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- duplicate test name
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- Fixes to EGADS loop senses when sense is +/-2
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- Forgot a file
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- Fixed array out-of-bounds in Pentatope basis function. Fixed memcheck
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- Speed improvement for stabilized CG. 3DNS isothermal wall BC. Many other
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- More robust jacobian check for CG Stabilized NS
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- changed DOF sharing calculations to correctly use max, and to calculate
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- Relaxed tolerance
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- Fixed adjoint order error
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- Check if error estimates are the same after several iterations
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- 2D DGAdv error estimate order test
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- moved the hard work split method into the common instantiation
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- fixing up the 3D logic a little bit, the edge local still works, need to
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- unsplit element dual tests
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- Fixed warnings
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- first, extremely basic split test
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- another simple split test, now with reattaching boundary groups attached
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- duplicate named tests
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- some tests for ElementDual Solution transfer, no surprises
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- duplicate test names
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- Reworkd DOF sync so Newton syncs zombies. Linear solver timings
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- Missed one
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- Forgot to add timing variable for MKL_PARDISO
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- Copy pasta
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- added scaling and offest to TripleBL and changed naming convention to
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- forgot the pattern update
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- New parallel unit tests. Ghost/Zombie DOFs synced in Newton. PETSc build
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- various changes to get 3D adapting
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- a 3D CG adaptation!
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- changes to 3D case to run on hypersonic
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- Missing include
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- to run a big case
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- Updates for latest AFLR patches
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- Custom build of gcc 8.2
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- Jenkims env fix for gcc8
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- Adding new RK unit test
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- Adding Complete RK unit test and new CMake list
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- AFLR4 now works. Need new library release.
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- Cleanup RK Parallel Serial test. Have not found the bug yet.
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- Fixes so RK works with new parallel paritioning
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- Assert Galerkin Stabilized PDE fluxViscousLinearInGradient. Add CMake
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- commiting a bunch of non-working tests and the 3D CG case.
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- More updates for AFLR4
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- CG Field constructor minor speed improvements. Nightly tolerances.
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- refactor to remove additional unneeded fields, should reduce the
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- Improved the speed of CG Field constructors. Should help local solves.
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- Minor fixes
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- Upgraded cppcheck on reynolds
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- A few more minor speed improvements to Galerkin error estimates.
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- xfielddomain fixes for avro api changes
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- unit test fixes for avro changes
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- some unit testing on polytopes
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- push to mac for IMR
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- Fixed bug when parallelizing nodal metrics
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- Fix for MultiScale metric
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- moved integrand construction outside of loops for speed
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- caught bug with assignment rather than accumulation
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- that speed up didn't work....
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- added get options for orientation, and caught bug with invalid split
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- added a check to see if element is owned by local processor
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- unused variable
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- Suppress cppcheck
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- another unit test
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- Added requested element print out. Fixed int for computing cost.
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- some more unit tests and caught a bug
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- Better CG load balancing. PETSc BAIJ works for processors with no DOF
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- Fix for error estimate nodal outputField
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- added dictionary options for SineSineSine
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- hunting some int casts
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- bumping that coverage up
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- 3D Element Dual test
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- tweak
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- Added mach output functional for DeltaWing
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- Started to rework cmake folder test names
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- forgot a dictionary
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- Added mach field dump for MOESS delta wing
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- New folder test names. We can revert/modify if they are awkward
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- Missed XDIR related things
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- dictionary fixes and parameter tweaks
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- more dictionary fixes
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- Periodic boundary support for gmsh reader
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- reduced test size
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- Updates so refine might work in parallel
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- Updated refine check with cmake
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- shortened test again...
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- Fixes for DeltaWing to dump mach field
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- Removed deformationTime.dat
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- PETSc uses x as initial guess. Use P-Adjoint as initial P+1-Adjoing with
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- Clean up adjoint solve for DeltaWing
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- Don't run refine in parallel yet
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- changing to unstabilized for testing
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- tweaks and removing an unintended file
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- basic scheduler and timing dumps at the end of test adapthist
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- Periodic gmsh fix for parallel
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- moving box
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- mend
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- moving box
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- forgot to allow PETSC
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- JacobianFunctionalCell_Galerkin now works in parallel. Other small
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- changed to copy construction
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- Missed a solution initialization for PETSc
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- Added parallel interfac to XField_Lagrange.
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- Updated XField3D_refine so it hopefully works in parallel
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- work towards calling avro from parallel SANS
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- refine API now works in parallel
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- Don't allocate P and P+1 jacobian at the same time for Galerkin
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- Forgot some files
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- Various fixes
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- More informative error messages
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- One more fix for parallel grid creation
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- Typo
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- More robust EPIC call interface. Improved refine build.
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- Fixed memory leak
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- More robust system call to refine
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- might Edge local work?
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- running a 3D CG adapt in parallel!
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- forgot to actually use the scheduler
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- Precondition adjoint P+1 solve with adjoint P solve for DGBR2
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- Forgot some files
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- Wroking on L2 projections. Various fixes
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- Fixes for L2 projection cases
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- Typo
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- added a targetCost scheduler
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- unused variable and style fixes
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- maintain same list of lower-dim egads entities for parallel
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- avro interface for delta wing case
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- Minor cleanup
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- Fixes for running avro in parallel
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- merge conflict
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- boundary conditions in the correct order...
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- xfielddomain constructor when sans_avro not defined, warning fixes
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- lingering comma
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- forgot to comment some testing things that dont work
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- Various fixes to refine. L2 CG projection works in parallel
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- Fixes for refine. L2 cases to run for paper.
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- Fixed warnings
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- Using DirectLU for DeltaWing adjoint
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- mods to avro interface, added Curved parameter to omit visiblity checks
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- Various fixes to refine interface and AD L2 cases.
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- Added mlarocca@mit.edu to DeveloperEmailAddresses
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- Updates for latest fefloa
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- lagrange basis function on pentatopes with unit tests
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- change to avro interface
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- All kinds of fixes
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- 4d instantiations, still undefined refs with field & element
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- Fixed warnings/errors
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- un-instantiated so i can test some things, previous push had wrong
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- premerge
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- missing instantiations, fixing a few undef references
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- Relaxed tolerance
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- Unified robuster system call function
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- Fix mistakes I made related to label in XFieldDomain
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- Fixed analyzer warnings
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- prelim kuhn-freudenthal triangulation via avro
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- Upgraded builds to latest NLOPT and PETSc.
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- lagrange DOF map & trace2cellrefcoord + unit tests
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- lagrange dof map testing
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- Fixes for latest AFLR
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- Updates for L2 projection cases
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- Indexing bug
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- re-order lattice coordinates so we have canonical vertices first
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- moved eigenvalue calculation to impl + unit tests for 4x4
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- spacetime element associativity + unit tests
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- Added Triple BL to the MultiScale test
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- normal of tet in 4d via svd
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- finish implementation of tet normal in 4d
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- elementxfieldspacetime jacobian + volume + unit tests
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- constructed a 4d xfield!
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- wrap kuhn freudenthal triangulation around SANS_AVRO ifdef
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- still cant remember how to trigger dummy commit...
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- and again...
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- trailing whitespace
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- Tweak to refine build
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- Bumped up timing more for Hex Lagrange Cache test
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- Added L2 Projection solver interface
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- git jenkins not working...dummy commit
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- Added CG for L2Projection
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- Missing include
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- change case
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- element ridge (TopoDim-2 elements) needed to construct 4d elems
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- xfielddomain holds ego children not SANS::EGObject, reason is because
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- instantiations for 4d target metric matching
(details)
- CG field construction for TopoD4 meshes, tested on p=1
(details)
- target metric matching in 4d sandbox
(details)
- element ridge unit test + equilateral pentatope jacobian
(details)
- fixed bug with equilateral pentatope jacobian + matlab script + unit
(details)
- Fix typo
(details)
- field element pentatope tests
(details)
- debugging costmodel_logeuclidean on topoD4 ping tests
(details)
- brace alignment
(details)
- uncomment xfieldspacetime_pentatope tests until actually implemented
(details)
- unused defs
(details)
- undefined references without avro
(details)
- sign compare
(details)
- missing file to compile
(details)
- lingering comma
(details)
- ridge -> frame
(details)
- undef references
(details)
- commit deleted files
(details)
- wrap ifdef SANS_AVRO further ahead
(details)
- omit spacetime pentatope btest from memcheck because it takes a long
(details)
- instantiate matrixsyms4 projection for tets
(details)
- basis function instantiate
(details)
- matmul instantiation
(details)
- reduced number of orientations to make elementspacetime_pentatope test
(details)
- Remove maybe uninitialized wanrings on gnu 8
(details)
- last instantiation i promise
(details)
- bug in cost model log-euclidean test because of the vertex/step matrix
(details)
- seriously this has to be the last one
(details)
- last one!
(details)
- trigger commit
(details)
- up to p=2 for element space time test because it's really slow
(details)
- Added json parser to PyDict
(details)
- Lots of refactoring of AFLR4 and sansLIPAIM. All seems to be
(details)
- Minor fix
(details)
- Tweak to how AFLR is found
(details)
- Fixed compile error
(details)
- Update minimum boost version to 1.50 due to bug in property_tree json
(details)
- Merged AFLR4 test into EGTessModel
(details)
- More extensive try with sansLIPAIM
(details)
- Most sansLIP updates
(details)
- Fix MKL_PARDISO for transpose solves. Bug fix for AFLR3
(details)
- Use static MKL libraries due to python issues
(details)
- Don't statically link in the ld library
(details)
- Increased timout time for HDG test
(details)
- Realzed timing on another test
(details)
- push to hypersonic
(details)
- Separate list of MKL static libraries
(details)
- Always link in MKL statically with sansLIPAIM
(details)
- Moved error message for sansLIP
(details)
- Building mpi all_reduce into FunctionalCell_Galerkin
(details)
- Added missing includes
(details)
- Fixed uninitialized data in Flux_mitState_Nitsche for pure advective.
(details)
- Removed variable length arrays
(details)
- Missed a few variable length arrays
(details)
- One more warning
(details)
- Fixed warnings
(details)
- Better cleanup of coverage information
(details)
- Don't build sandbox with nightly
(details)
- Clang analyzer should still build sandbox
(details)
- Revived gradation penalty. Needs lots of tweaks and studying
(details)
- Updates for latest version of AFLR
(details)
- Gradation still needs more work...
(details)
- Fix compiler error
(details)
- Fixed arry bound typo in test
(details)
- more tests for orientations of tets in 4d
(details)
- lingering changes
(details)
- DG fields in 4d + unit tests
(details)
- silly typo
(details)
- can only use KF triangulation if avro is hooked in
(details)
- Udpates to sansLIPAIM to work with new CAPS dataTransfer setup
(details)
- system test for DG with pentatopes
(details)
- use SANS convention for trace orientation instead of the one used in
(details)
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