Changes

Summary

1. add p-seq (details)
2. minor CG edits (details)
3. fixed bug in 2D jacobianGradientSource (details)
4. debugging jacobianfluxviscous (details)
5. working on fluxjacobianviscous (details)
6. working on fluent 2d file write (details)
7. added PtHa BN bc, debugged fluent file writer (details)
8. added PtHa solution function (details)
9. bug fix for BN PtHa (details)
10. no contribution to lifting operator resid for non-visc bc (details)
11. sandbox edits (details)
12. change NS solution mitstate to inviscid implementation, added Pt BN (details)
13. merge conflicts, also added MassFlux output (details)
14. new WBWT sandbox (details)
15. added RANS exclusion to btest length, mods for WBWT solve (details)
16. added RANS2D w source term. (details)
17. modified source (details)
18. minor edit to usersource (details)
19. added 3D user source rans (details)
20. forgot a file (details)
21. working towards 3D rans w source term (details)
22. minor mods (details)
23. added 1D stab cg adjoint convergence tests (details)
24. merge (details)
25. further exploring 1D supg (details)
26. adding stabilization to the strong form integrand. (details)
27. forgot to hide stab from the agnostic constructors (details)
28. indexing bug with order increaser (details)
29. switch from std::set to std::vector (details)
30. speed ups for EdgeLocal. For DG 40% faster than elemental now (details)
31. speed ups for EdgeLocal. For DG 40% faster than elemental now (details)
32. working towards 3D XField_EdgeLocal (details)
33. a slightly bigger unsplit test (details)
34. forgot some files from the edgeLocal speed up (details)
35. set a proper exception in ErrorModel.cpp, also caught a few forgotten (details)
36. tweaks to solutions and bcs (details)
37. added constructors that take in FieldBundles, in order to keep (details)
38. forgot to add stabilization parameter (details)
39. some debug stuff and an additional WriteMatrixMarketFile method (details)
40. forgot to comment out Nitsche params, and added fieldwweighted Dirichlet (details)
41. forgot to remove dumping to tmp (details)
42. dev excepting body out because doesn't have test yet (details)
43. commenting out untested bit in strongform (details)
44. added a fix to set normalSignL for 1D meshes (details)
45. Added a finite-volume (with two-point flux approx) AlgEqnSet (details)
46. Added some jacobian tests for FV_TPFA (details)
47. Added Solve2D_FV_BDF case for two-phase problem (details)
48. Updated Galerkin cell outputs to work in parallel (details)
49. Updated FV test case (details)
50. Fixed wrong include (details)
51. Test case updates (details)
52. #if petsc things (details)
53. working on edge grids, fixed a bug in 1D with unassigned normal (details)
54. some placeholder/developer excepted methods so that I could compile (details)
55. general clean up (details)
56. stabilization needed for Euler tests (details)
57. switch based on Neighborhood, added some more LocalSolve tests (details)
58. switched to static constexpr values for spaceType rather than a method (details)
59. weird bit of attempted metaprogramming, wasn't needed in the end but (details)
60. spaceType() to spaceType fixes (details)
61. some Advection Reaction adapt toys (details)
62. Some Euler adapts. Still pretty suspicious of them both, but they run (details)
63. a 1D Galerkin AD adapt (details)
64. an Alg EqSet test for Euler (details)
65. merge (details)
66. airfoil case (details)
67. added an exact solution for the characteristic AdvectionReaction case (details)
68. added missing NoneBC for use in ErrorEstimate_Galerkin's undo boundary (details)
69. Test case updates (details)
70. converted all SANS_ASSERT to SANS_ASSERT_MSG (details)
71. modified integrand so PDE IPB terms and strong-form BCs are more clear; (details)
72. added blunt-TE NACA test case; small mods to existing IPTF test cases (details)
73. Minor fix (details)
74. Added cosine-wave permeability field (details)
75. removed AdvectionReaction analytic function, and then fixed up ASExp to (details)
76. local Solve directory was working (details)
77. AlgEqSets now working for p1-3 and more configurations. Also the Euler (details)
78. general clean up, and hopefully boosted the coverage a little (details)
79. forgot to not write jacobians to tmp, and also an AR DGBR2 adapt and (details)
80. boosting coverage and fixing jenkins complaint for code that I hadn't (details)
81. Q1D source term up and running (details)
82. edits to CG AD toy (details)
83. it compiles! Now for unit tests (details)
84. minor updates (details)
85. super basic split a single tet test passes! (details)
86. Fixed bug in AVSensor_ViscousFlux1D for space-time diffusion (details)
87. bug fix (details)
88. a more complicated test with new interior traces (details)
89. coverage hunting (details)
90. getting close to spacetime Q1DEuler (details)
91. mpi communicators are now actually being passed in the constructor (details)
92. changed BCTypeFlux that wasn't being used so it can specify inflow and (details)
93. had to add 1d and 3d, and also bits and pieces comments wise (details)
94. Updated heterogeneity in test cases (details)
95. added double flux eval testing (details)
96. changes towards being able to expose ErrorEstimates at SolverInterface (details)
97. tweaking some of the accessors (details)
98. changed the virtual function. Fixed someone using {} instead of a (details)
99. changed the virtual function. Fixed someone using {} instead of a (details)
100. turns out can't just in time construct estimates, because member const (details)
101. Updated IntegrandCell_FV_TPFA to use GalerkinWeightedIntegral_New (details)
102. Changes to Buckley-Leverett AV BCs (details)
103. More test case updates (details)
104. moving toward spacetime q1d euler (details)
105. Added p-sequencing to heterogeneous test case (details)
106. Missing robustness term added (details)
107. Added 1D AV adaptive nozzle (details)
108. Filled in line search unit test (details)
109. hunting coverage (details)
110. Added deleted functions (details)
111. Various updates. Added FP control surface deflection (details)
112. Test case update (details)
113. Merge conflict fix (details)
114. Includes for MPI communicator (details)
115. Updated tests (details)
116. Fixed residinterp and nMonitor in PDEEuler1D (details)
117. Fixes for CauchyRiemann (details)
118. added a tolerance for Reynolds (details)
119. Minor cleanup of adaptive nozzle case (details)
120. Fixed when unit test file is checked (details)
121. Modified AV source terms to allow for different activation ranges (details)
122. Fixed compile error (details)
123. Fixed warnings (details)
124. Unified Buckley-Leverett AV BCs + updated unit-tests (details)
125. Unifying twophase AV BCs (details)
126. dictionary option for silencing the 'Primal solve time:' etc, for use in (details)
127. added additional template arguments so can be used in boundary (details)
128. pre merge (details)
129. added function weighted boundary output, and a very simple test (details)
130. forgot to include the templating changes in the tests 2 commits ago (details)
131. typos (details)
132. put the option in the wrong dictionary, and also added another link (details)
133. a jacobian functional test. (details)
134. Unified twophase AV BCs + added more unit-tests (details)
135. Cleaning up adaptation toys (details)
136. Updated unit-tests (details)
137. Fixed compiler warnings (details)
138. Fixed link error (details)
139. Forgot to update some cases (details)
140. boundary output functional estimate case. Currently not working (details)
141. two tests for computing output functionals via dispatch. Neither working (details)
142. two tests for computing output functionals via dispatch. Neither working (details)
143. Minor updates (details)
144. a lot of additional boundary functionals for AD (details)
145. broke into separate files (details)
146. removed tests that wouldn't work, made an actual dispatch test, it (details)
147. removed algEqSet, just testing the dispatcher now (details)
148. Primal strong form cell error estimates (details)
149. strong form interior trace integrand (details)
150. Working on boundary functionals (details)
151. Added a DG P0 GenHField + unit-tests (details)
152. Switching from smoothabs to smoothmax may have just fixed our AV (details)
153. Forgot methematica file (details)
154. Fixed nightly link error (details)
155. Minor fix (details)
156. AV working much better with max in AV PDE (details)
157. split up BCEuler into two files to make vera happy (details)
158. Updates for SuitesSparse library dependencies (details)
159. Removed static boost libraries (details)
160. Made suitesparse metis library optional (details)
161. Separated out EGADS tessellation into a separate library (details)
162. Forgot one cmake file (details)
163. found bug in 2D RANSSA unit test (details)
164. updated unit tests to conform to max in AV (details)
165. missed an instantiation (details)
166. Added ParamFieldBuilder for GenH_DG + unit-tests (details)
167. Updated sandbox toys (details)
168. added accumulation unit tests, also some missing BC unit tests (details)
169. Minor cleanup (details)
170. fixed uninitialized data, struct warning (details)
171. resolve merge conflicts, apply AV max change to 2D, 3D Euler (details)
172. Removed Euler/DBR2 instantiations (details)
173. No false results during unit tests, but might not work (details)
174. Moved precision check into algebraic equation set, it might be broken (details)
175. Better logic (details)
176. More tidying (details)
177. Minor formatting and performance cleanup (details)
178. Fix some issues Jenkins found (details)
179. More fixes for Jenkins (details)
180. Another fix (details)
181. Missing override (details)
182. Small fixes (details)
183. Fixed typo (details)
184. Undo template change (details)

add p-seq

minor CG edits

fixed bug in 2D jacobianGradientSource

debugging jacobianfluxviscous

working on fluxjacobianviscous

working on fluent 2d file write

added PtHa BN bc, debugged fluent file writer

added PtHa solution function

bug fix for BN PtHa

no contribution to lifting operator resid for non-visc bc

sandbox edits

change NS solution mitstate to inviscid implementation, added Pt BN

merge conflicts, also added MassFlux output

new WBWT sandbox

added RANS exclusion to btest length, mods for WBWT solve

added RANS2D w source term.

modified source

minor edit to usersource

added 3D user source rans

forgot a file

working towards 3D rans w source term

minor mods

added 1D stab cg adjoint convergence tests

merge

further exploring 1D supg

adding stabilization to the strong form integrand.

forgot to hide stab from the agnostic constructors

indexing bug with order increaser

switch from std::set to std::vector

speed ups for EdgeLocal. For DG 40% faster than elemental now

speed ups for EdgeLocal. For DG 40% faster than elemental now

working towards 3D XField_EdgeLocal

a slightly bigger unsplit test

forgot some files from the edgeLocal speed up

set a proper exception in ErrorModel.cpp, also caught a few forgotten
changes to non-default stabilization

tweaks to solutions and bcs

added constructors that take in FieldBundles, in order to keep
discretization/stabilization hidden at the solverInterface level.
DGAdvective and Galerkin need to be able to use the same interface

forgot to add stabilization parameter

some debug stuff and an additional WriteMatrixMarketFile method

forgot to comment out Nitsche params, and added fieldwweighted Dirichlet
sansLG

forgot to remove dumping to tmp

dev excepting body out because doesn't have test yet

commenting out untested bit in strongform

added a fix to set normalSignL for 1D meshes

Added a finite-volume (with two-point flux approx) AlgEqnSet

Added some jacobian tests for FV_TPFA

Added Solve2D_FV_BDF case for two-phase problem

Updated Galerkin cell outputs to work in parallel

Updated FV test case

Fixed wrong include

Test case updates

#if petsc things

working on edge grids, fixed a bug in 1D with unassigned normal
directions, added a 3D split test that does nothing and changed a few
things

some placeholder/developer excepted methods so that I could compile
AlgEqSet with WriteMatrixMarket

general clean up

stabilization needed for Euler tests

switch based on Neighborhood, added some more LocalSolve tests

switched to static constexpr values for spaceType rather than a method

weird bit of attempted metaprogramming, wasn't needed in the end but
could be useful later

spaceType() to spaceType fixes

some Advection Reaction adapt toys

Some Euler adapts. Still pretty suspicious of them both, but they run

a 1D Galerkin AD adapt

an Alg EqSet test for Euler

merge

airfoil case

added an exact solution for the characteristic AdvectionReaction case

added missing NoneBC for use in ErrorEstimate_Galerkin's undo boundary
integrals phase

Test case updates

converted all SANS_ASSERT to SANS_ASSERT_MSG

modified integrand so PDE IPB terms and strong-form BCs are more clear;
added adjoint consistent Nitsche parameters

added blunt-TE NACA test case; small mods to existing IPTF test cases

Minor fix

Added cosine-wave permeability field

removed AdvectionReaction analytic function, and then fixed up ASExp to
have the correct formula for the characteristics

local Solve directory was working

AlgEqSets now working for p1-3 and more configurations. Also the Euler
tests are now passing

general clean up, and hopefully boosted the coverage a little

forgot to not write jacobians to tmp, and also an AR DGBR2 adapt and
Galerkin NS adapt

boosting coverage and fixing jenkins complaint for code that I hadn't
touched...

Q1D source term up and running

edits to CG AD toy

it compiles! Now for unit tests

minor updates

super basic split a single tet test passes!

Fixed bug in AVSensor_ViscousFlux1D for space-time diffusion

bug fix

a more complicated test with new interior traces

coverage hunting

getting close to spacetime Q1DEuler

mpi communicators are now actually being passed in the constructor

changed BCTypeFlux that wasn't being used so it can specify inflow and
outflow fluxes for AD

had to add 1d and 3d, and also bits and pieces comments wise

Updated heterogeneity in test cases

added double flux eval testing

changes towards being able to expose ErrorEstimates at SolverInterface
level when necessary

tweaking some of the accessors

changed the virtual function. Fixed someone using {} instead of a
nullptr which was making shared_ptrs complain

changed the virtual function. Fixed someone using {} instead of a
nullptr which was making shared_ptrs complain

turns out can't just in time construct estimates, because member const
is needed later, will have to just allow people to be silly

Updated IntegrandCell_FV_TPFA to use GalerkinWeightedIntegral_New

Changes to Buckley-Leverett AV BCs

More test case updates

moving toward spacetime q1d euler

Added p-sequencing to heterogeneous test case

Missing robustness term added

Added 1D AV adaptive nozzle

Filled in line search unit test

hunting coverage

Added deleted functions

Various updates. Added FP control surface deflection

Test case update

Merge conflict fix

Includes for MPI communicator

Updated tests

Fixed residinterp and nMonitor in PDEEuler1D

Fixes for CauchyRiemann

added a tolerance for Reynolds

Minor cleanup of adaptive nozzle case

Fixed when unit test file is checked

Modified AV source terms to allow for different activation ranges

Fixed compile error

Fixed warnings

Unified Buckley-Leverett AV BCs + updated unit-tests

Unifying twophase AV BCs

dictionary option for silencing the 'Primal solve time:' etc, for use in
batch running

added additional template arguments so can be used in boundary
functionals

pre merge

added function weighted boundary output, and a very simple test

forgot to include the templating changes in the tests 2 commits ago

typos

put the option in the wrong dictionary, and also added another link

a jacobian functional test.

Unified twophase AV BCs + added more unit-tests

Cleaning up adaptation toys

Updated unit-tests

Fixed compiler warnings

Fixed link error

Forgot to update some cases

boundary output functional estimate case. Currently not working

two tests for computing output functionals via dispatch. Neither working
right now

two tests for computing output functionals via dispatch. Neither working
right now

Minor updates

a lot of additional boundary functionals for AD

broke into separate files

removed tests that wouldn't work, made an actual dispatch test, it
doesn't pass

removed algEqSet, just testing the dispatcher now

Primal strong form cell error estimates

strong form interior trace integrand

Working on boundary functionals

Added a DG P0 GenHField + unit-tests

Switching from smoothabs to smoothmax may have just fixed our AV
issues...

Forgot methematica file

Fixed nightly link error

Minor fix

AV working much better with max in AV PDE