Changes

Summary

1. CG field construction for TopoD4 meshes, tested on p=1 (details)
2. target metric matching in 4d sandbox (details)
3. Refactored projection to Qauxi_IBL by unifying implementations for DuplicateField and UniField IBL (details)
4. element ridge unit test + equilateral pentatope jacobian (details)
5. fixed bug with equilateral pentatope jacobian + matlab script + unit test on implied metric (details)
6. added a boundary output for the triple BL, various clean ups, reverting to 0.25 for the default param (details)
7. Refactored UniField IBL variable interpreter.  More work needed to propagate to everywhere oc the code base. (details)
8. Minor refactoring.  Updated pyrite file. (details)
9. Refactoring.  Realizing that using ctau is fragile since log(ctau) is frequently needed to compute n_tilde but ctau can undershoot through below zero. (details)
10. Refactored UniField variable/eqns to use nt as a conservative quantity (details)
11. Restored panel method unit test (details)
12. Tweaked iteration limit to wait until convergence (details)
13. Refactored constructors of IBL PDE and fluid models.  Started PDEIBLUniField unit test.  Other minor refactoring (details)
14. Added 2D+T AD case, in progress, with assorted necessary changes. Still needs BC fix. Also added framework for 4D single pentatope unit grid. Should hopefully also include all necessary unit testing, as mapped from similar 1D cases to cases of interest. (details)
15. Fix typo (details)
16. field element pentatope tests (details)
17. debugging costmodel_logeuclidean on topoD4 ping tests (details)
18. brace alignment (details)
19. uncomment xfieldspacetime_pentatope tests until actually implemented (details)
20. unused defs (details)
21. undefined references without avro (details)
22. sign compare (details)
23. missing file to compile (details)
24. lingering comma (details)
25. ridge -> frame (details)
26. undef references (details)
27. commit deleted files (details)
28. wrap ifdef SANS_AVRO further ahead (details)
29. omit spacetime pentatope btest from memcheck because it takes a long time, bump up timeout for it as well (details)
30. instantiate matrixsyms4 projection for tets (details)
31. basis function instantiate (details)
32. matmul instantiation (details)
33. reduced number of orientations to make elementspacetime_pentatope test go faster (details)
34. Remove maybe uninitialized wanrings on gnu 8 (details)
35. last instantiation i promise (details)
36. bug in cost model log-euclidean test because of the vertex/step matrix ordering (details)
37. seriously this has to be the last one (details)
38. last one! (details)
39. trigger commit (details)
40. up to p=2 for element space time test because it's really slow (details)
41. Revamped Qauxv/parameters API. (details)
42. Fixed typos (details)
43. Propagated more changes in IBL parameter API.  Verified coupled IBL UniFIeld forced laminar case. (details)
44. Fixed more tests related to IBL parameter API (details)
45. Update test/system/AnalyticSolve/AnalyticSolve2D_DGAdvective_IBL_StagnationFlow_SingleElem_LamiBL_btest.cpp (details)
46. Verified two system tests with PDEIBL2D using LF flux. (details)
47. Fixed uncoupled IBL HDG case (details)
48. 2D+T is running, working towards validation. (details)
49. Added json parser to PyDict (details)
50. Fixed formatting from vera++. Also reformulated 2D+T case for convergence investigation. (details)
51. switched from pure adv to AD for hypersonic. (details)
52. 2D+T AD ST toy fix; need unit tests for BCAD2D.h (details)
53. Fixed bugs in PDEIBLUniField (details)
54. Lots of refactoring of AFLR4 and sansLIPAIM. All seems to be functioning. (details)
55. Minor fix (details)
56. Tweak to how AFLR is found (details)
57. Fixed compile error (details)
58. Update minimum boost version to 1.50 due to bug in property_tree json reader. (details)
59. Merged AFLR4 test into EGTessModel (details)
60. Fixed flux feedthrough for 2D+T AD. (details)
61. More extensive try with sansLIPAIM (details)
62. Most sansLIP updates (details)
63. Fix MKL_PARDISO for transpose solves. Bug fix for AFLR3 (details)
64. Use static MKL libraries due to python issues (details)
65. Don't statically link in the ld library (details)
66. Increased timout time for HDG test (details)
67. Realzed timing on another test (details)
68. Refactored UniField IBL and ran it for forced and free transition problems (details)
69. Played captured transition (forced and free) (details)
70. Updated initial solution guesses for reformulated captured transition IBL (details)
71. Unified system test on the case of uncoupled IBL laminar BL on airfoil (details)
72. Refactored IBL numerical fluxes (details)
73. Updated pyrite files for coupled coupled IBL cases with laminarBL+turbulentWake (details)
74. Moved 2D+T convergence to Solve3D, made Adapt3D version adapt. (details)
75. Typo fix. (details)
76. Ran and added pyrite files for captured forced transition without using cut-cell machinery (details)
77. push to hypersonic (details)
78. Verified reasonable agreement between natural transition solution of UniField IBL using cut-cell against that using plain DG without cut-cell (details)
79. Added recent-5 to Adapt3D 2D+T AD (details)
80. Added MKL instantiation (details)
81. Separate list of MKL static libraries (details)
82. Always link in MKL statically with sansLIPAIM (details)
83. Moved error message for sansLIP (details)
84. Building mpi all_reduce into FunctionalCell_Galerkin (details)
85. Added missing includes (details)
86. projection stabilization (details)
87. Minor edits (details)
88. Changed default numerical flux (details)
89. Added pyrite files for fitted transition of forced cases (details)
90. Removed redundant cases (details)
91. Minor updates (details)
92. Added an alternative turbulent onset ctau value (details)
93. Updates before running grid convergence on fitted transition (details)
94. fixed a bug in PDEIBL source.  other minor fixes (details)
95. Updated pyrtied files to fix the bug in PDEIBL lag source term introduced on 2018/11/02 in commit 9625612 (details)
96. Tweaked a default setting for system test pyrite checks (details)
97. Cleaned up system tests (details)
98. Fixed free-forced nested solver logic for transition at element interface (details)
99. Updated and cleaned up pyrite files (details)
100. Updated an initial solution file for flow transition system tests (details)
101. Renaming (details)
102. minor updates (details)
103. Added a to-do (details)
104. added to-do (details)
105. Refactored two system tests.  Added options to change transition model parameters on the fly (details)
106. Fixed a bug/feature in an unimportant if statement (details)
107. Cleanup (details)
108. Cleaned up deprecated parts.  Fixed LF flux.  Refactored transition front source/flux.  Editted printout (details)
109. Fixed uninitialized data in Flux_mitState_Nitsche for pure advective. (details)
110. Updated pyrite file after updating PDEIBL LFflux related stuff (details)
111. Removed variable length arrays (details)
112. Replaced turbulent BL TS wave growth rate with the previous formulation of interpolating over turbulent sub-element, which makes cd vs ntcrit relation smooth.  Updated pyrite files for free transition (details)
113. Minor refactoring (details)
114. Fixed LFflux for IBLUniField.  Refactored test case and updated pyrite file (details)
115. Missed a few variable length arrays (details)
116. One more warning (details)
117. Refactored PDEIBLUniField member field to allow for parameter ntcrit sweep.  Updated initial solution guess to be based on an existing IBL solution. (details)
118. Fixed warnings (details)
119. Better cleanup of coverage information (details)
120. Don't build sandbox with nightly (details)
121. Clang analyzer should still build sandbox (details)
122. Revived gradation penalty. Needs lots of tweaks and studying (details)
123. Added unit test for 2D+T implementations. (details)
124. Working on pentatope tests. (details)
125. Changed scaling factor for objective (details)
126. Added 1D and 2D includes (details)
127. Updates for latest version of AFLR (details)
128. Gradation still needs more work... (details)
129. Fix compiler error (details)
130. Fixed arry bound typo in test (details)
131. more tests for orientations of tets in 4d (details)
132. lingering changes (details)
133. DG fields in 4d + unit tests (details)
134. silly typo (details)
135. can only use KF triangulation if avro is hooked in (details)
136. Working on unit grids... (details)
137. transferring (details)
138. Another formatting fix. (details)
139. Another formatting fix. (details)
140. minor editting (details)
141. added modified diffusion matrix (details)
142. minor mod to proj stabilization (details)
143. Fix includes. (details)
144. pre merge (details)
145. add proj stab matrices for 1DAD, stokes (details)
146. taking out some comments (details)
147. Taking the warning machete to things. (details)
148. Refactored test case input (details)
149. Udpates to sansLIPAIM to work with new CAPS dataTransfer setup (details)
150. system test for DG with pentatopes (details)
151. Minor update (details)
152. Added an option of wake ctau_eq but not used (details)
153. moving to hyper branch (details)
154. MCMC flat plate for class (details)
155. forcing function for heating (details)
156. use SANS convention for trace orientation instead of the one used in avro (details)
157. 1Ptope test working, fixed assumptions on nodal definitions. (details)
158. fixed GLS? (details)
159. edit cmake list (details)
160. 2Tope unitgrid working, testcase working. (details)
161. Turned off tesseract for push. (details)
162. Light LIP tecplot files (details)
163. Smaller tecplot file for LIP (details)
164. Fix scoping issues. (details)
165. Fixed warnings (details)
166. Added comment with origin of SVD3 algorithm (details)
167. handmade unit grid: 1 pentatope with 5 pentatope neighbours (details)
168. allow all orientations of traces (1 to 12) in checkGrid (details)
169. local grid extraction for pentatopes (details)
170. cell to trace connectivity for pentatopes (details)
171. finish implementation of element associativity of pentatopes (details)
172. unit tests for local grid extraction around pentatopes (single pentatope and single pentatope surrounded by neighbours) (details)
173. other minor changes (details)
174. gradprojection working (details)
175. verified optimal order for 1DAD grad projection (details)
176. comm rank = 0 using xfield_lagrange (details)
177. 24Ptope working, passing checkGrids(). test in progress. (details)
178. remove duplicate unit grids in favour of handmade ones (details)
179. warning fix (details)
180. warning fix (details)
181. 24Ptope unit grid working, tested and working. (details)
182. commit so it ought to run for ben? (details)
183. Add duration to each build in Jenkins email. (details)
184. tweaks and the forcing (details)
185. full rank diffusive stabilizaiton (details)
186. actually making it not work (details)
187. changed the try catch for implied metric optimization to doing nothing rather than excepting. Also tweaks to MCMC file (details)
188. tweaks and removed a bunch of heap memory allocations (details)
189. added options to the quadratic (details)
190. more mods to projection stabilization (details)
191. undoing a lot of sketchy things (details)
192. rolling back more sketchy stuff (details)
193. mods for running with avro (details)
194. comment typos (details)
195. switching over to avro (details)
196. everything compiles, gotta track down unit tests (details)
197. getting unit tests to pass (details)
198. Reworked build of parmetis. refine uses parmetis. added avro build. (details)
199. minor edits to edge local unit tests (details)
200. Fixes for avro and refine (details)
201. Suppress warning (details)
202. Parallel Field4D test fixes. Give refine more time. (details)
203. Relaxed tolerance for intel (details)
204. Don't run ErrorOrder_4D in parallel (details)
205. Updated refine build (details)
206. Updated refine check (details)
207. Nightly build fixes... plus a stopgap ifdef until the SVDless 4D normal vector is done. (details)
208. Reduce run time of 4D error order check (details)
209. Relaxed another tolerance (details)
210. trying out some edge stabilization (details)
211. MCMC things and got the temp sensors working (details)
212. Remove files written by avro (details)
213. Dissable refine testing for now (details)
214. Added memcheck to parmetis build (details)
215. Ignore external parmetis (details)
216. added hessian to interior trace (details)
217. edge stabilization working-ish? (details)
218. changing branch (details)
219. MC for running on hypersonic (details)
220. ready for running on hypersonic (details)
221. Generalized valgrind suppression (details)
222. moving to hypersonic again (details)
223. egads coords must have 3 dimensions even in 2d (details)
224. the final files from the project (details)
225. forgot a function (details)
226. pushing to tucano (details)
227. Suppressed CMakeLists errors. [TBD] (details)
228. Fixed panel metod tests (details)
229. AFLR4 updates and some Jenkins scripts (details)
230. Link tetgen before avro (details)
231. instantation of elementlocal version of local splits for 4d...unit test will fail because the result is different than savi's convention (details)
232. missing definitions for elementlocal & edgelocal (details)
233. some instantiations of savi's method for doing local splits (details)
234. xfield_lagrange method of doing local splits...still debugging...will fix later... (details)
235. Refactoring.  Patched unit tests (details)
236. More unit tests (details)
237. added unit tests (details)
238. Fixed unit tests (details)
239. Fixed IBL unit tests (details)
240. Added unit test.  Turned off unused methods. (details)
241. Fixed a bug in CMakeLists: use of out-of-scope variable (details)
242. Fixed a bug in cmake files that only appear when building with Xcode (details)
243. Refactored ping test input array type.  Fixed IBL-related 4x4 block system ping tests.  Added missing MPI-related method definitions for pure virtural methods (details)
244. Relocated code into SANS_MPI macros; otherwise, errors are raised about "member access to incomplete type" (details)
245. Verified/fixed/cleaned IBL system tests with transition (full upwind). (details)
246. Fixed duplicate naming of boost test suite (details)
247. Relaxed pyrite tolerance (details)
248. Updated forced-transition pyrite files after the bug fix in commit b30121ee5531d91e84aac94fbdab6462f458f4f8 (details)
249. Turned off file dump (details)
250. Fixed formatting (details)
251. Fixed empty traling line (details)
252. Fixed DG and HDG AES tests for uncoupled IBL (details)
253. Fixed formatting (details)
254. Reverted changes to (viscous) HDG stuff: those abandoned changes treated qfld and afld as a single bundle field (details)
255. Update AlgebraicEquationSet_HDGAdvective_Advection_btest.cpp (details)
256. Fixed one more test affected by ping test refactoring.  Fixed formatting and screen output (details)
257. Fixed another system test affected by IBL Qauxv interpreter refactoring (details)
258. Update ErrorOrder_1D_HDGAdvective_Advection_btest.cpp (details)
259. Fixed warning and missing instantiation (details)
260. Added an instantiation just for completeness, although it is no longer used (details)
261. moving towards adjoint GLS (details)
262. Cleaned sandbox cases (details)
263. relaxed tolerances for clang_release (details)
264. Suppressed output (details)
265. Fixed bugs in CMakeLists (details)
266. Fixed HDG advection tests (details)
267. Removed the pure advection test case using (viscous) HDG machinery (details)
268. parallel outputs in galerkin solver interface, AGLS error estimation fixed? (details)
269. Refactored halving line search and fixed unit tests (details)
270. Fixed memory errors (details)
271. Relaxed tolerance for intel (details)
272. relaxed tolerances for intel18 (details)
273. Relaxed timeout limits (details)
274. Speed up unit tests in response to Jenkins timeout (details)
275. Fixed typo (details)
276. Relaxed tolerance for gnu48 (details)
277. Tried to fix timeout on Jenkins testing (coverage_clang reynolds) (details)
278. Reverted CMakeLists to see if TIMEOUT is set properly this time on Jenkins (details)
279. minor refactoring (details)
280. Refactored CMakeLists for Xcode build (details)
281. Refactored Newton solver (details)
282. Minor fix (details)
283. Fixed warnings (details)
284. Added IBL max update fraction (details)
285. Enabled under-relaxed Newton update for coupled 4x4 block system of IBL with free transition. (details)
286. Refactor of avro XField interface (details)
287. Consistent logic for setting cmake testing timout property (details)
288. Fixed refine interface change (details)
289. Fix ifdef when not using avro (details)
290. More fixes to deal with avro (details)
291. Minor cleanup (details)
292. Added unit tests for IBL updateFraction (details)
293. Upgrade PETSc (details)
294. More avro and PETSc tweaks (details)
295. I don't understand why dl library is needed to link a static library... (details)
296. Fix for refine check (details)
297. Suppress compiler warning when building PETSc (details)
298. Fix for avro with 4D (details)
299. Enable refine testing again (details)
300. Updated copyright date to 2019 (details)
301. Updated copyright date to 2019 (details)
302. dimension-independent local splits (details)
303. timing tests show dim-independent implementation on par with savithru's impl...tried to debug hugh's local xfield in primal mode but something is wrong...unit tests on the way (details)
304. adding stabilized error estimation infrastructure (details)
305. more playing with AGLS (details)
306. minor edits (details)
307. reconciling merge conflicts and some tweaks (details)
308. license updates (details)
309. fixes to match avro (details)
310. forgot to add the avro defined precompile check (details)
311. relaxed tolerances and forgot to split world (details)
312. tweaking tol again... (details)
313. another tweak... (details)
314. cleanup of localpatch + commenting (details)
315. copyright (details)
316. more copyright (details)
317. Updates for MOESS optimizations. Still needs more work. (details)
318. Instantiations for 4D AD solve. (details)
319. A few fixes (details)
320. Compile fixes (details)
321. More instantiations for 4D (details)
322. removed anachronistic definition of primal grid. Primal grid now matches the behavior of the normal DG grids. Unit tests have just been turned off in the meantime (details)
323. make sure mpi is init'd before calling rank by actually running in parallel (details)
324. revert back to dual (details)
325. ifdef SANS_AVRO for tests with CKF triangulation (details)
326. changed to Dual in the system test (details)
327. attempted to fix nightly tests (details)
328. Relaxed timings, fixed warning (details)
329. Updated pyrite files to fix nightly tests (details)
330. Moved timing test into sandbox (details)
331. Cleanup of refine interface with auto memory management. (details)
332. Modest progress on instantiations. (details)
333. Fix include (details)
334. 4D box unit grid grandfathered out of XField_KuhnFreudenthal. (details)
335. added fix to 3D (details)
336. removed the separate 4D file, just added an instantiate at the end of 3D (details)
337. p=7 led to error close to machine zero, which seemed to cause touble to nightly ErrorOrder test.  Cut back p from 7 to 6 (details)
338. p=6 still too high for pyrite test for ErrorOrder (details)
339. Attempted to warning "use of zero-allocated memory" (details)
340. Some cleanup in the sandbox. Added 2D L2Project adaptation (details)
341. Added tecplot dump for metric fields. Other small fixes (details)
342. Changed floor to round for generating new 1D mesh (details)
343. Minor refactoring (details)
344. Compile fixes and more dependency warning suppressions (details)
345. Add dl library for avro (details)
346. Replaced nt transport equation with G variable as in SciTech paper, although the results are equivalent (details)
347. bits and pieces (details)
348. added linear args and a test (details)
349. just wanna get my stuff in the repo (details)
350. Files for parallel periodic XField2D_Box_Triangle_Lagrange (Issues need to be fixed) (details)
351. retrieve edge indices and sub elems from split (details)
352. ref coordinates on split sub cells (details)
353. Added a layer of abstractions when evaluating fluxes, sources etc. in IBL pde class (details)
354. Fixed formatting... previously went under the radar since vera++ was not installed locally... (details)
355. inst of some 4d adaptation things (details)
356. Added scalar and dot product fixes for MatrixSymS (details)
357. Working on 3d ST... (details)
358. Enabled smooth laminar/turbulent blending (details)
359. Fixed SVD calculation for normal vector for 4D tet. (details)
360. Scrubbed some comments. (details)
361. edits to gls error estimation (details)
362. unit tests for basis function ref elem split (details)
363. 4d adapt? (details)
364. Fixed intel errors by relaxing tolerance and reconciling a missing pyrite file specialized for intel MKL (details)
365. added a Field weighted stabilized CG nodal estimate integrand test in 2D (details)
366. comment (details)
367. Continued work on ElementXField implementations. (details)
368. Vera fixes, COPYRIGHT fixes, and some avro preprocessor fixes. (details)
369. Updates for 2D L2 Projection sandbox test (details)
370. Updates for 1D L2 Projection sandbox test (details)
371. Clearing out high-level exceptions whose low-level implementations are done. (details)
372. Added last bits of ADST4D case, should run (?) now. (details)
373. Added new trace free step matrix error model. Not enabled. (details)
374. added a 2D error estimate test, and asserted assumption on basis function type (details)
375. Fix. (details)
376. fixed the estimate vary tests (details)
377. notebook with Double BL exact solutions (details)
378. forgot the copyright change (details)
379. Normalize MOESS optimization with nlopt (details)
380. Fixed undefined reference (details)
381. Fixed a bug in laminar/turbulent blending function (details)
382. ifdef SANS_AVRO requirements in unit tests. (details)
383. removed the scp to devastator. Should be useful for everyone now (details)
384. forgot to change a quadratic function explicit constructor (details)
385. undoing a print (details)
386. EQUILATERAL PENTATOPE coordinates + added unit volume check in unit test to catch this (details)
387. unit test for split ref step matrix on pentatopes + generating matlab script (details)
388. unit tests for error model (details)
389. 4D L2 ERROR ADAPTATION WORKS...cleaning up........ (details)
390. Added new MOESS optimization without global FrobNorm (details)
391. Forgot CMake file (details)
392. CG artificial viscosity in 2D (details)
393. Small fix for cmake summary (details)
394. Weekly test fixes (details)
395. Modified AlgEqSet, IntegrandInteriorTrace and 2D DGAdvective toy for Parallel 2D Periodic Grids (details)
396. Towards parallel PETSc/TAO (details)
397. Refactored intermittency calculation (details)
398. Generailized Projection to Qauxi to handle blended intermittency. (details)
399. Trying to bump coverage. (details)
400. Some cleanup of logEuclidian cost (details)
401. Added lagrange P1 to the exception (details)
402. copywrite update for some files (details)
403. Various small fixes (details)
404. added a Tanh2 function based on Loseille's Tanh3 (details)
405. Updated Embedding unit test for quadrature integration (details)
406. Reverted to binary intermittency as default (details)
407. Relaxed tolerance for intel compiler.  Restored default to binary intermittency for existing tests (details)
408. Trying to get coverage... (details)
409. Tests added + un-tested, unused additions removed. (details)
410. Added comments and made sure ADST4D case is ready for parallelization. (details)
411. More parallel fixes. (details)
412. Relaxed torleranc for gnu48 (details)
413. More parallel fixes. (details)
414. Added regularized point source to accommodate potential co-existence of free and forced transition in the captured transition treatment (details)
415. Updated ADST3D cases (solve and adapt) for avro and MPI use. (details)
416. Forgot an MPI redefine. (details)
417. jk MPI fix actually this time. (details)
418. Minor fix (details)
419. Continued avro- and MPI-ification. (details)
420. Unit testing fixes. (details)
421. Fixed warning. (details)
422. Fixed fstream initializer. (details)
423. Warning cleanup... (details)
424. Fixes towards parallel+periodic (details)
425. Coverage improvement... (details)
426. cleanup of interface to match savithru's (details)
427. instantiation of 4d savithru splits (technically the extraction works because that's what i started with but the actual split does not) (details)
428. Fixes for running parallel DG with periodic BCs (details)
429. Removed adapt4d skeleton from build. (details)
430. Added instantiation (details)
431. ffs (details)
432. instantiate SVD (with error), XField_Local calls XField_LocalPatch in 4d which local_split_patch is turned off (details)
433. ifdef sans avro in sandbox file (details)
434. instantiation of new MOESS SANS optimizer for 4d (details)
435. experimenting w p1 adjoint (details)
436. adapt3d change in api (details)
437. relaxed tolerance for system test (details)
438. publicize error model functions...still not sure why (details)
439. added note about protected methods for error model class (details)
440. missing operator for 1d function (details)
441. unprotected from SANS_AVRO avro namespace use (details)
442. rename file to avoid copyright check (details)
443. deleted file (details)
444. Only have vera look at .cpp and .h files (details)
445. SANS_CHECK_CLOSE not BOOST_CHECK_EQUAL for floats, come on philip (details)
446. bug != in shock capturing (details)
447. revert back to formulation (details)
448. add expt stab (no-op) to 2DAD (details)
449. Added a C2 continuous smooth abs (details)
450. fix intel compiler warning (details)
451. add pending changes in local patch header (details)
452. Run SANS_Commit in parallel (details)
453. Cannot specify format for 'time' on all systems (details)
454. Updates to SANS_Commit.sh (details)
455. One more parallel fix (details)
456. Forgot to run 'make all' (details)
457. Fix make warning for now (details)
458. dev exceptioned code required only for 4d tecplot. (details)
459. added a C2 smoothabs and matlab file that generated (details)
460. actually got the smoothmax1, smoothmax2 functions work, also added implicitly defined smoothmin1 and smoothmin2 (details)
461. merge fix (details)
462. merge fix 2 (details)
463. working on new error models (details)
464. ASExpCombo function for testing L2 (details)
465. Revive Adapt L2Project (details)
466. partial cleanup of local patch before supporting CG patches (details)
467. Removed PBAM (details)
468. fix for jenkins, smoothmax2, tweaks to SANS opt and the VectorX hack to work with Phil (details)
469. unparallelized a test, there's a bug in P4 Hierarchical parallel (details)
470. turning the P3 and P4 unsplit tests off again. There's something weird and MPI-ish going wrong here (details)
471. Missed one include (details)
472. Missed one more file (details)
473. more cleanup of local patch (details)
474. Suppress valgrind avro+intel strange warnings (details)
475. Broke up DGBR2lib trying to reduce compile time (details)
476. pre merge (details)
477. support for CG local solves with XField_LocalPatch (details)
478. forgot to propagate changes in function names to tests (details)
479. turnon off local patch splits for jenkins (details)
480. silence warning (details)
481. Switched implied metric optmizer to MMA (details)
482. agls tweaks (details)
483. Relaxed tolerance (details)
484. complete unit tests for xfield local patch...still need some work on CG tests (details)
485. merge conflict (details)
486. a stupid bug (details)
487. changes to optimizers, and also turning the modified model back off (details)
488. Fix work weekly (details)
489. Weekly suppression and revived cotire (details)
490. Fixed the last error. (details)
491. Fixed a warning (details)
492. Added option to use CG field for PTC time step (details)
493. Changed the span of the SANS frob norm penalty function (details)
494. unit tests for DG/CG patches (details)
495. remove print_inline (details)
496. Conical method of stroud added, and working. Still needs integration into pentatope. (details)
497. Added a ego map to EGTessModel that maps from All egos to Unique egos (details)
498. add xfield for full potential code using avro (details)
499. Integrated Stroud into 4D quadrature. (details)
500. cleanup avro wake3d (details)
501. Fixed compile error (details)
502. Fixed another compile error (details)
503. work towards high-order support for local patch split (details)
504. getting unit tests to pass... (details)
505. fixing merge conflicts (details)
506. Fix up PseudoTime_btest (details)
507. Fixed btest memory leak. (details)
508. Improved stroud testing. (details)
509. experimenting with an element based local solve (details)
510. BCNone is dead. Long live BCNone. (details)
511. New Implied Metric optimizer based on logM. Various other small fixes. (details)
512. elemID must be global (details)
513. support for high-order local patch (details)
514. ifdef avro (details)
515. Updates for CG 3D Euler with shock capturing and 2D RANS (details)
516. multiple def from copy paste (details)
517. uninitializaed data fix (typo) (details)
518. changes to error model interface for high-order local splits (details)
519. Removing problematic instantiations due to wall distance parameter with artificial viscosity for RANS (details)
520. add info as to which type of field is being sampled (details)
521. Removing code from BCEuler3D_mitState.h which was ifdef'd out (details)
522. added integer template for equation number (details)
523. typo in avro wake (details)
524. specialized wake model not defined without avro (details)
525. added an ND test of the BCNone with and without useFluxViscous (details)
526. Galerkin folder passes (details)
527. added the downcast to NoneBC to extract the boolean (details)
528. converted HDG over to the new Nones (details)
529. Updated implied metric for TAO. Fixed a number of floating point problems. (details)
530. More robust testing, compiler warning silencing. (details)
531. dont inherit from xfield_avro if not defined (details)
532. still missing some ifdef (details)
533. Various compile fixes. Generalized Adapt2D_Mesh_Optimize for all mesh generators. (details)
534. Missed one (details)
535. Warning fixes (details)
536. killed a few more BCTypeNone references, just plugging away (details)
537. pre merge (details)
538. Removed the BCNoneUniField (details)
539. Added switching for expensive PI quadrature/low-cost NI quadrature. Fixed associated tests to get correct convergence rates. (details)
540. committing sandbox pre-merge (details)
541. someone forgot to actually use the W and B typedefs (details)
542. missing include (details)
543. fixed the CMakeLists.txt (details)
544. made BCNone_AV to do with annoying ArtVisc feature (details)
545. missing includes and last bit (details)
546. fixed typo: derived to dervied (details)
547. vera slap correction (details)
548. Fixed one more BCNone (details)
549. forgot a file (details)
550. Removing more of the block artificial viscosity stuff in 2D and unit test updates (details)
551. More merge conflicts (details)
552. More merge conflict resolution (details)
553. Fixed memory leak. (details)
554. used quadrature cache for L2 projection (details)
555. fix for order = 0 integration (details)
556. New cost target for SANS MOESS optimizer. Lots of work towards avro+Wakes. (details)
557. Fixed typo (details)
558. Minor fixes (details)
559. One more typo (details)
560. Unit test updates (details)
561. Helps to use consistent array size (details)
562. Updates to jenkins scripts (details)
563. Segregating MeshAdapter (details)
564. Missing instantiation (details)
565. Fixed mistake in BuildAVRO (details)
566. Fixes for 3D CG case with artificial viscosity (details)
567. Fixed compile issues related to separating dimensions (details)
568. Initializing variables to fix some compiler warnings (details)
569. LU factorization on processors so PETSc solves reliably (details)
570. Missed a few (details)
571. IRS updates (details)
572. Fix for gnu 4.8 (details)
573. Refactored tecplot output to reduce link time (details)
574. Forgot files (details)
575. Fixed muliple instantiations (details)
576. pre merge (details)
577. Syncing with hypersonic (details)
578. reverting a dead end (details)
579. Adapt4D de-mothballing. (details)
580. Fixed 'potential' memory leak problem by putting frees in same scope as creation. (details)
581. Suppress cppcheck bug (details)
582. tweaked AGLS setup, hope this one gets through!! (details)
583. AGLS formulation w/ correction getting good rates! push to laptop, need to fix unit tests (details)
584. unit tests should be working... (details)
585. pre merge (details)
586. Another cppcheck suppression (details)
587. clean up on choosing reSolve groups (details)
588. some clean up (details)
589. added a virtual method for computing Initial Error. The default version has the overhead of a solve associated, whereas the SolverInterface version has the cheaper version that avoids the solve and thus is more robust (details)
590. parameter for avro to allow for interior boundaries needed for wake models (details)
591. unit tests ready to go (details)
592. Adding 4D Legendre basis for Adapt4D + error estimates. (details)
593. cmake addition of 4d legendre... still not finished though. (details)
594. oops (details)
595. don't use Philip's split for now (details)
596. add nb for output correction (details)
597. got rid of a unnecessary sandbox, updated other test (details)
598. One less call to checkGrid for curved LocalPatch (details)
599. More IRS stuff (details)
600. moved metric conformity to separate file (details)
601. tried to assess metric conformity and re-adjust target cost but simpler to just ask the mesher and have inner loop on adaptations to control target cost (details)
602. pushing to hypersonic (details)
603. some fixes to actually use the volume factor... (details)
604. new elemental error estimate for CG, not especially tested but seems to be ok (details)
605. more tweaks to cases (details)
606. Add static caching for pentatope quadrature. (details)
607. Set edge length bound = 1 for 1D (details)
608. Added exponential and maxcubic functions (details)
609. 1D test cases (details)
610. std::stringstream has a surprisingly expensive constructor (details)
611. Fixed formatting (details)
612. Added missing copyright (details)
613. Added missing includes (details)
614. include set (details)
615. merge (details)
616. still default to savithru's local split (details)
617. protect quadrature tests with use_conical (details)
618. Deleted unnecessary includes (details)
619. changes to make avro grids compile again (details)
620. cleanup and forgotten files (details)
621. Progress towards avro+Wakes. Added intel19 to jenkins env. (details)
622. Quadrature fix. (details)
623. Added Legendre4D Bases. (details)
624. Adapt4D ADST should *start*. (details)
625. Remove files dumped by avro (details)
626. Fixed missing parameter checks (details)
627. Improved speed of XField_LocalPatch (details)
628. Allow longer time for slow test (details)
629. debug CG local patch (details)
630. Update UniqueTrace to use UniqueElem (details)
631. Added 4D pentatope Legendre unit tests. (details)
632. Complete Legendre 4D test. (details)
633. Actually this time. (details)
634. Universalized legendre max order, refactored variable. (details)
635. first errormodel additions. (details)
636. Updating the delta wing case (details)
637. Fixed compile errors (details)
638. reference element tested and ready to fly. (details)
639. More compile fixes for DeltaWing. avro works again with it. (details)
640. Skip blank backtrace numberes. Lots of work towards avro+Wakes (details)
641. Fixed test for lagrange basis function spacetime, moving coords to inherited class from base class. (details)
642. warning fix, you dumbass\! (details)
643. Fixed up hashing and added unit tests for UniquElem (details)
644. fixed cross-machine tolerancing issue. (details)
645. Lots of fixes for avro+Wakes (details)
646. Don't dump file (details)
647. pre merge (details)
648. Reduce testing in MOESS_Gradation_Optimizer_NLOPT_btest (details)
649. new and improved AGLS formulation (details)
650. premerge (details)
651. Use operator() to modify avro topologyDup (details)
652. Add backtrace info to singular matrix. Enable VERA_ERROR for all builds with SANS_Commit.sh (details)
653. Quadrature fixes (details)
654. Removed unnecessary line (details)
655. Add vera to CentOS and Rhel. Undo some fixes. (details)
656. Added boost to LD_LIBRARY_PATH on CentOS (details)
657. Guard against negative nodal metrics from ImpliedMetic optimizer (details)
658. Updated avro and refine build to work with .tgz files (details)
659. Updated build of lapack and avro build to use SANS lapack (details)
660. Forgot to remove test hack (details)
661. Fixed mistake in FindLAPACK (details)
662. Add more diagnostics to Jacobian failure with RefCoordSolver (details)
663. More debug info for singular RefCoordSolve (details)
664. Missing include (details)
665. GRRRRRRRRRRRRRRRR CELL GROUP 1 NEEDS  TO BE ADDED TO RESOLVE CELL GROUPS FOR CG GRRRRRRRRRR (╯°□°）╯︵ ┻━┻ (details)
666. got rid of hackery (details)
667. extra space (details)
668. Working towards scale invariant DenseLinAlg solves (details)
669. line unit test should really allow edge split since its the same as an iso split, vera fixes too (details)
670. cleanup of unused debugging stuff...what a colossal waste of time (details)
671. trailing whitespace (details)
672. Update vera to remove scripts when warn/error is changed. Add limits inlcude where numeric_limits is used. (details)
673. reverting to new AGLS formulation (details)
674. reverting to not use Philip's split to get thru Jenkins (details)
675. silence warning (details)
676. Updates to CMake files (details)
677. Fix quadrature memory leak again (details)
678. trying to solve pivot problem... not yet though. (details)
679. added assert grid. Wraps check grid in a try-catch and return true if it passes. Can use in places where checkGrid can be removed in Release mode (details)
680. pre merge (details)
681. Updates so avro+Wake appears to be working (details)
682. fixed ReferenceElement constraint jacobian assignment ya dingus. (details)
683. fixed ReferenceElement constraint jacobian assignment ya dingus, pt. II: unit testing boogaloo (details)
684. Removed pivoting change that was dumb anyway. (details)
685. Combined into one file (details)
686. sandbox updates (details)
687. moving towards rans adaptive cg (details)
688. RANS test case working (details)
689. rans joukowski working for real? (details)
690. Fixed link errors (details)
691. More fixes for avro+Wake. Needs some more checks. (details)
692. Forgot files (details)
693. Fixed compile error (details)
694. Split up the Adaptation library by dimension (details)
695. Compile error fix (details)
696. Fix link errors (details)
697. Another link error (details)
698. Migrated single boundary layer scalarfunction from 4D to 3D+T (details)
699. Remove debug files (details)
700. Don't run avro with wakes due to failing debug dumps in avro (details)
701. Split avro Wake edges that span the entire wake (details)
702. Trying to split segments on wakes, but I need help... (details)
703. Fail depends tests if files are generated (details)
704. Reworking MOESS to use Field_CG (details)
705. revert away from Philip's local split (details)
706. update error estimate unit test (details)
707. unused variable (details)
708. added gravity to 2D two phase case (details)
709. New parameters for new EPIC 10.3 executable (details)
710. More reworking of MOESS (details)
711. More cleaning of MOESS (details)
712. Fix ccache path for SANS_Depend tests (details)
713. Another script fix for depends (details)
714. catch invalid split for high-order (details)
715. Lots more work towards refactored MOESS (details)
716. More work on MOESS (details)
717. updated ADST cases. (details)
718. MOESS refactoring to use fields seems to be done. (details)
719. Fixed includes (details)
720. Fixed parallel print statement (details)
721. SANS optimizer was using wrong initial step matric. (details)
722. Fixed bug in edge length deviation (details)
723. Minor fixes (details)
724. More ping tests (details)
725. Split up ProjectGlobalField (details)
726. Asymmetric cost schedule (details)
727. CMake updates (details)
728. continued working on debugging two phase gravity fluxes (details)
729. TAO implied metric calculation works in parallel (details)
730. Fix typo (details)
731. Remove mesh_0.json from tests with avro (details)
732. More work towards parallel MOESS with TAO (details)
733. Some compile fixes (details)
734. Synchronize error models in ghost/zombie cells (details)
735. Parallel MOESS is very close (details)
736. Link error fixes (details)
737. Some small fixes (details)
738. working out RANS stabilization terms (details)
739. pre merge (details)
740. Stole MMA from NLopt to parallelize with TAO. (details)
741. Added paralel serial equivalence test for MOESS TAO-MMA (details)
742. If I TAO+MMA does not wory, try MMA+MPI (details)
743. oliver test is running, not getting right rates yet (details)
744. Added artificial viscosity to tilted reservoir test case (details)
745. version used in the git bisect (details)
746. refactored stabilized CG (details)
747. more robust quadrature tests, shouldn't have issues with quadrature caching. (details)
748. push to laptop in the middle of updating RANSSA (details)
749. missing term for adjoint in RANSSA.. needs unit testing (details)
750. rans sourcegradientjacobiangradient thoroughly unit tested (details)
751. Added pressure integral output for two-phase. Modified tilted reservoir test-case. (details)
752. Parallel MMA algorithm! (details)
753. Forgot the unit test (details)
754. and the actual files (details)
755. more forgotten files (details)
756. Some vera fixes (details)
757. took out demote surreal (details)
758. unit tests updated for stabilized integrand (details)
759. changes to error model to use order scaling in the regularization (details)
760. A number of fixes for parallel MOESS (details)
761. copyright notice fix (details)
762. fixing a function that got mangled somehow/sometime (details)
763. license error (details)
764. Updated ErrorModel_Element unit test (details)
765. Fixed warning and relaxed tolerance (details)
766. More minor fixes (details)
767. Added another derivative of St option (details)
768. Really really relaxed tolerance for Parallel/Serial equivalence for TAO with Intel... not sure whats up with that... (details)
769. updates to strongform integrand (details)
770. added needed hooks to 3D for stabilized CG (details)
771. Nightly fixes (details)
772. Trying to improve the speed of XField_Lagrange (details)
773. add RANS ndconvert omterface (details)
774. fixed up RANS asymptotic (details)
775. added trace on scalar, bug in new source fcn in 3d (details)
776. fixed unit test, mod source (details)
777. new adjoint analytic function for 1D BL (details)
778. added needed hooks for AV, implementation will be needed (details)
779. getting unit tests to pass (details)
780. working on RANS... (details)
781. relax tol on unit test (details)
782. truly linear adjoint (details)
783. caught some bugs, put in unit tests (details)
784. pre merge (details)
785. Quadrature fix on AD3DST. (details)
786. AD4DST refactor. (details)
787. orthodoxy is unconsciousness. (details)
788. quadrature fixes (details)
789. AD4D update. (details)
790. Fixed some analyzer warnings (details)
791. One more analyzer suppression (details)
792. Some MPI cleanup (details)
793. target dof factor (details)
794. always forget to switch local split (details)
795. horizontal tab (details)
796. wake tests were originally off (details)
797. Finalized moving nDOFpossessed to Field (details)
798. Added missing include (details)
799. settings for Marshall to run (details)
800. Fixed a bug in PTC residual indexing (details)
801. Add debug information for MassMatrix singular matrix errors (details)
802. fixes to mesh adapt (details)
803. Missing include (details)
804. Enabled daisy chain in algebraic equation set class for PTC.  Refactored (and hopefully clarified) calculation of pseudo-transient contributions to residuals and jacobians (details)
805. Fixed a bug in PTC AES's cell group integration calls, and a bug in residualPseudoTemporal daisy-chain call (details)
806. Enabled PTC for coupled IBL of 4x4 block system (details)
807. Updated unit test (details)
808. CG RANS is looking more promising... (details)
809. loops in rans joukowski (details)
810. One more missing include (details)
811. fixes for jenkins (details)
812. fixed excessively small initial case... now starting from predicted uniform box size. (details)
813. Added solve4d smart dof case. (details)
814. added hooks for BICGStab (details)
815. Speed improvements for UniqueElem and XField_Lagrange (details)
816. Purged matrix manipulation Nishida hack (details)
817. fixed test to match ErrorModel_Elemental.h (details)
818. One move too many (details)
819. playing around with stabilization (details)
820. RANS with scaling (details)
821. Fix for jenkins parallel make (details)
822. Updates to porous media PDEs: added gravity to 2D two-phase, added pressure output functional (details)
823. Vera fixes (details)
824. Fixed copyright notice (details)
825. One more fix.. (details)
826. Fix uninitialized value (details)
827. Some cleanup in PTC (details)
828. Fixed a bug in PTC daisy chain implementation: previously, past solution and time step field was not properly updated for daisy-chained equations (details)
829. reapply quadorder fix. (details)
830. Fix for singular matrix detection. Only guard against 1/0. (details)
831. Separating out LAPACK from LAPACKE (details)
832. Fixes for LAPACK interface (details)
833. Forgot to switch back a change (details)
834. Only test with LAPACKE on reynolds (details)
835. Don't show LAPACKE as an option on OSX (details)
836. Minor fix (details)
837. Include MKL in coverge testing (details)
838. Source intel for coverage (details)
839. Fixes for checking LAPACK (details)
840. Automatic checking of all lapack functions used by SANS (details)
841. Some small fixes (details)
842. Relax tolerance a bit more for intel (details)
843. Added maximum rate matrix output (details)
844. updated i/o on 4d cases. (details)
845. New files for Adjoint consistent potential (details)
846. Cleanup trace matrix print (details)
847. Forgot a file (details)
848. working on RANS (details)
849. Fixes for latest refine (details)
850. agls formulation looks better? (details)
851. modified RANS tests (details)
852. pre merge (details)
853. typo denomerator to denominator (details)
854. caught an indexing bug with interior trace groups (details)
855. some tweaks as was retesting using elemental estimates. They still don't work (phew....) (details)
856. changed the Galerkin DoubleBL case to match up with the DG one (details)
857. changed checkGrid() to assert(assertGrid()). This is the same as checkGrid() in debug mode, but gets removed in release (details)
858. bug fixes and clean up (details)
859. undoing the assertGrid, it doesn't work how I thought it did (details)
860. updated io on 2D+T cases. (details)
861. fixed solve4d i/o (details)
862. fixes to make the avro grids work in the adapt (details)
863. fixed h approximation, *philip's tableflip emoticon*. (details)
864. oops. (details)
865. hooks for modifying order and power and command line (details)
866. fixed dumbass error. (details)
867. Minor fixes per intel guide. Fix avro+wake. (details)
868. still working on RANS... (details)
869. Some fixes for BLAS and turn off one Wake test (details)
870. adding new parmafield builders (details)
871. Forgot file dump (details)
872. Updated EPIC interface (details)
873. distance function gradient working (details)
874. hack for sourcegradient compiles (details)
875. unitialized warnings from jenkins (details)
876. tweak for hypersonic (details)
877. found a bug in RANS source gradients (details)
878. this one not that one (details)
879. deprecated ElementDual local patch. Everyone can use Element now, and it should throw an exception if you run with ElementDual (details)
880. added the spaceType to the dummy problems (details)
881. sigh. forgot they need override (details)
882. maaaaaan (details)
883. sigh (details)
884. Fix for PETSc 3.11 (details)
885. moved the all_reduce inside the #define of Boundary Outputs. The FunctionalCell_Galerkin already includes an all_reduce (details)
886. Setup for Mike Park to test metric calculations (details)
887. commiting the new error model and the two double boundary layer cases to run on hypersonic (details)
888. Fix nightly clang warning (details)
889. typos and a small test for the DOF Map, didn't catch anything... (details)
890. playing with formulations, added source to BC (details)
891. getting closer (details)
892. SA wake test case (details)
893. minor edits to rans, unit tests (details)
894. i think the stabilization is sound... (details)
895. Added case to adaptND_mesh_optimizer_toy to easily generate unstructured uniform grids. (details)
896. SolveND_DGBR2_AD_ST_toy for 3D and 4D now have grid loading capability, but it's ifdeffed out for now. (details)
897. fixed #define (details)
898. start from DG grids (details)
899. more tinkering with RANS (details)
900. nitsche param now includes source term (details)
901. Added 2D+T CG unstabilized advection diffusion mechanics. (details)
902. added an integrand for estimating the square of the L2 error locally (details)
903. locked the TopoDim template to the Topology::TopoDim template. We should not be templating on both here, these should be removed (details)
904. added some integral tests (details)
905. A class for computing L2 error estimates, either nodally or elementally (details)
906. Reduced ErrorOrder_4D_DG_Pentatope_btest max grid size to reduce runtime (details)
907. Fixed uninitialized data with intel (details)
908. removed TopoDim from the for_each_XXX functions. Also added Topology::CellTopoDim, which gives the dimension of the topology for which Topology was a trace. (details)
909. Also made a GalerkinLib in the process of splitting out the local solve machinery for CG to use in the L2 proction solver (details)
910. fixing up unit tests to match new indicator calculation. Also changing mitState Nitsche to use the p independent lengthL. Will then need to choose constants properly some other way. (details)
911. A Nodal error estimate order test (details)
912. refactor into explicit instantiations and added GalerkinLib to a CMakeLists.txt I forgot (details)
913. more instantiations and fix a bug (details)
914. moving towards a CG L2 local projection. (details)
915. updating error estimate order tests. DG now uses the mitState BC, the CG one does not as it can't achieve the rates. There must be an instability in the adjoint.... (details)
916. Use CG local patch bcs for the local solve (details)
917. actually added the declaration to the header... (details)
918. Added a re-roll of the c++-14 make_unique feature (details)
919. Added a re-roll of the c++-14 make_unique feature (details)
920. first use of make_unique. (details)
921. ErrorEstimateL2 should now handle p0 or p1 estimation gracefully, and also actually handled that stupid merge conflict (details)
922. Fixed many clang analyzer complaints (details)
923. new MDG directory (details)
924. MDG integrand cell unit test passing (details)
925. changed name of test and added the notebook that generated the L2 error integrand tests (details)
926. forgot an mpi include (details)
927. all_reduce only works on POD not the KahanSum (details)
928. some tweaks (details)
929. interior trace w/ 1d unit test (details)
930. missed a bracket in the merge (details)
931. jacobian ping test added for cell,trace (details)
932. forgot to turn CG LG trace back on (details)
933. added CG sandbox for AD 2D+T problem. (details)
934. Fixed more analyzer warningw (details)
935. fixed for push, incorporated hugh's mistakenly included preprocessor define. (details)
936. more hugh fixes plus trueoutput fixes. (details)
937. SolverInterfaceL2 project actually uses the correct local patch for CG now (details)
938. JEEEEENNNNKIONNNNSSSSS (details)
939. added SA nitsche (details)
940. jacobian and residual unit tests passing (details)
941. Fixed typo (details)
942. jenkins punched me in the face *again*. (details)
943. MDG solve works.. needs debugging (details)
944. grumble (details)
945. VOLUME_WEIGHTED crept through on those last commits. It shouldn't have and this fixes that (details)
946. why oh why did i not save the fixes last time (details)
947. preprocessor sandbox troubles. (details)
948. dumb preprocessor stuff fix. (details)
949. bad include habits fixed. (details)
950. MDG solves! optimal rates! (details)
951. warning fix. (details)
952. getting closer to everything compiling (details)
953. moved jacobian calculations into output integrands for Galerkin. bunch of stuff still not working (details)
954. getting closer to passing unit tests.. (details)
955. unit tests updated (details)
956. unit test/compile fixes (details)
957. indentation warning (details)
958. last final last warning bother. (details)
959. tidying solve3d_CG_AD_ST_toy (details)
960. MDG jacobianfunctional in place, solves are compiling (details)
961. MDG compiles fine but doesn't stabilize in advective limit. Hmm... (details)
962. MDG working well again.. we have to figure out the Nitsche BCs (details)
963. change cb back to 2 to pass Jenkins (details)
964. 2D error order compiling (details)
965. add function hooks to 3DST (details)
966. added function hooks for 1d, 2d spacetime (details)
967. fieldweighted cell integrand for MDG (details)
968. added fieldweighted for MDG trace integrand (details)
969. More clang analyzer warning fixes. (details)
970. more needed function hooks (details)
971. change to isothermal wall BCs, push to hypersonic (details)
972. ughhhhhh more ndconvert troubles (details)
973. add isothermal to RANs BCs (details)
974. removed unused typedef (details)
975. Nightly fixes (details)
976. fixed mdg unit tests (details)
977. Nightly fixes (details)
978. reordered MDG jac, added error estimate cell (details)
979. RANS cases working pretty well, pushing to hypersonic (details)
980. mdg error estimates in place (details)
981. took out adjointState functions (mostly) (details)
982. completed sourceJacobianHACK change. MDG adjoints not quite working... (details)
983. error estimate unit test passing, but sandbox case is off... (details)
984. mdg error estimates working! (details)
985. typo (details)
986. cleanup (details)
987. fixed hack interface (details)
988. added unit testing for 3D RANS fncs, other cleanup (details)
989. forgot a file (details)
990. sandbox edits (details)
991. complaining about includes? (details)
992. unused variables.. push to tucano for memcheck (details)
993. unit test name change (details)
994. missing definition (details)
995. trying to fix segfault (details)
996. fixed the warning, but there's a segfault somewhere in edgelocal3d... (details)
997. wow that was really dumb but took 4 hours to find (details)
998. putting Nitsche into stabilization object.. stil lin process (details)
999. premerge (details)
1000. most things compiling... (details)
1001. nitsche parameter change complete.. things seem to compile ok (details)
1002. member variables out of order (details)
1003. Added unit tests for gravity term in PDETwoPhase2D + some cleanup (details)
1004. tweaks to get MDG working for systems (details)
1005. fixed checks for parallel (details)
1006. whoops switched back (details)
1007. hopefully more correct for parallel? (details)
1008. Nightly fixes (details)
1009. Another nightly fix (details)
1010. More nightly fixes (details)
1011. Another nightly fix (details)
1012. Hopefully last warning fix (details)
1013. minor edits that shouldn't affect anything (details)
1014. MDG with discontinuous efld.. does better! (details)
1015. working towards error estimate from fine scale (details)
1016. minor change to AGLS (details)
1017. missed a function update (details)
1018. push to hypersonic (details)
1019. push to hypersonic (details)
1020. few changes to MDG output (details)
1021. mdg rans sandbox compiling (details)
1022. extra args for output (details)
1023. print resid bug fix (details)
1024. MDG qp should initialize to zero (details)

CG field construction for TopoD4 meshes, tested on p=1

target metric matching in 4d sandbox

Refactored projection to Qauxi_IBL by unifying implementations for DuplicateField and UniField IBL

element ridge unit test + equilateral pentatope jacobian

fixed bug with equilateral pentatope jacobian + matlab script + unit test on implied metric

added a boundary output for the triple BL, various clean ups, reverting to 0.25 for the default param

Refactored UniField IBL variable interpreter.  More work needed to propagate to everywhere oc the code base.

Minor refactoring.  Updated pyrite file.

Refactoring.  Realizing that using ctau is fragile since log(ctau) is frequently needed to compute n_tilde but ctau can undershoot through below zero.

Refactored UniField variable/eqns to use nt as a conservative quantity

1. Started a new pyrite file for coupled airfoilLaminar+wakeTurbulent case
2. Verified uncoupled IBL airfoil laminar case

Restored panel method unit test

Tweaked iteration limit to wait until convergence

Refactored constructors of IBL PDE and fluid models.  Started PDEIBLUniField unit test.  Other minor refactoring

Added 2D+T AD case, in progress, with assorted necessary changes. Still needs BC fix. Also added framework for 4D single pentatope unit grid. Should hopefully also include all necessary unit testing, as mapped from similar 1D cases to cases of interest.

Fix typo

field element pentatope tests

debugging costmodel_logeuclidean on topoD4 ping tests

brace alignment

uncomment xfieldspacetime_pentatope tests until actually implemented

unused defs

undefined references without avro

sign compare

missing file to compile

lingering comma

ridge -> frame

undef references

commit deleted files

wrap ifdef SANS_AVRO further ahead

omit spacetime pentatope btest from memcheck because it takes a long time, bump up timeout for it as well

instantiate matrixsyms4 projection for tets

basis function instantiate

matmul instantiation

reduced number of orientations to make elementspacetime_pentatope test go faster

Remove maybe uninitialized wanrings on gnu 8

last instantiation i promise

bug in cost model log-euclidean test because of the vertex/step matrix ordering

seriously this has to be the last one

last one!

trigger commit

up to p=2 for element space time test because it's really slow

Revamped Qauxv/parameters API.

Fixed typos

Propagated more changes in IBL parameter API.  Verified coupled IBL UniFIeld forced laminar case.

Fixed more tests related to IBL parameter API

Update test/system/AnalyticSolve/AnalyticSolve2D_DGAdvective_IBL_StagnationFlow_SingleElem_LamiBL_btest.cpp

Verified two system tests with PDEIBL2D using LF flux.

Fixed uncoupled IBL HDG case

2D+T is running, working towards validation.

Added json parser to PyDict

Fixed formatting from vera++. Also reformulated 2D+T case for convergence investigation.

switched from pure adv to AD for hypersonic.

2D+T AD ST toy fix; need unit tests for BCAD2D.h

Fixed bugs in PDEIBLUniField

1. forgot 0.5 factor in source term of lag equation.  2. wrong sign in the amp source term equation for imposing initial condition on nt.  3. fixed upwinded flux of full upwinding

Lots of refactoring of AFLR4 and sansLIPAIM. All seems to be functioning.

Minor fix

Tweak to how AFLR is found

Fixed compile error

Update minimum boost version to 1.50 due to bug in property_tree json reader.

Merged AFLR4 test into EGTessModel

Fixed flux feedthrough for 2D+T AD.

More extensive try with sansLIPAIM

Most sansLIP updates

Fix MKL_PARDISO for transpose solves. Bug fix for AFLR3

Use static MKL libraries due to python issues

Don't statically link in the ld library

Increased timout time for HDG test

Realzed timing on another test

Refactored UniField IBL and ran it for forced and free transition problems

Played captured transition (forced and free)

Updated initial solution guesses for reformulated captured transition IBL

Unified system test on the case of uncoupled IBL laminar BL on airfoil

Refactored IBL numerical fluxes

Updated pyrite files for coupled coupled IBL cases with laminarBL+turbulentWake

Moved 2D+T convergence to Solve3D, made Adapt3D version adapt.

Typo fix.

Ran and added pyrite files for captured forced transition without using cut-cell machinery

push to hypersonic

Verified reasonable agreement between natural transition solution of UniField IBL using cut-cell against that using plain DG without cut-cell

Added recent-5 to Adapt3D 2D+T AD

Added MKL instantiation

Separate list of MKL static libraries

Always link in MKL statically with sansLIPAIM

Moved error message for sansLIP

Building mpi all_reduce into FunctionalCell_Galerkin

Added missing includes

projection stabilization

Minor edits

Changed default numerical flux

Added pyrite files for fitted transition of forced cases

Removed redundant cases

Minor updates

Added an alternative turbulent onset ctau value

Updates before running grid convergence on fitted transition

fixed a bug in PDEIBL source.  other minor fixes

Updated pyrtied files to fix the bug in PDEIBL lag source term introduced on 2018/11/02 in commit 9625612

Tweaked a default setting for system test pyrite checks

Cleaned up system tests

Fixed free-forced nested solver logic for transition at element interface

Updated and cleaned up pyrite files

Updated an initial solution file for flow transition system tests

Renaming

minor updates