Changes

Summary

1. uses HOME and gcc-12 (details)
2. makes seq clang (details)
3. syncs gcc12 (details)
4. cleaned path (details)
5. suppresses warn unused (details)
6. to suppress gcc-12 warning, explictly allocate MPI_Status *status argument (details)
7. expose method to parse meshb contents (details)
8. adds analytic metrics for WMLES examples (details)
9. matches FUN3D_INTG deps (details)
10. uses newer 121-beta.2022.08.18.1700 (details)
11. fixes string (details)
12. downgrade to ESP/121 for ringlib COMBINE (details)
13. creates contains prototype (details)
14. asserts outside root voxel (details)
15. extracts child's bbox by index (details)
16. checks a contained child (details)
17. verifies other corner points (details)
18. reuses ref_oct_child_bbox to avoid copy-paste (details)
19. diag (details)
20. returns bbox (details)
21. return box for no child (details)
22. starts split to (details)
23. prints info (details)
24. tests three levels of ref_oct_contains (details)
25. quiets execution (details)
26. simplfies by returning the result of the recersice ref_oct_contains_node from childern (details)
27. refines oct to surf (details)
28. adds accept test coverage for oct surf (details)
29. cleans libsanitizer reported leaks (details)
30. fixes wwait typo (details)
31. uses loop index (details)
32. reduce allocation to required for accept case (details)
33. moves the free out of loop, still being used (details)
34. reports the size of the octree (details)
35. creates a hex-quad from tri placeholder (details)
36. creates the nodes required on edges and tri (details)
37. unifies the midnode create (details)
38. converts tri to quad with ref translate --blockhead (details)
39. subdivides edges for later extrusion (details)
40. allows solb metric as multiple scalrs of correct size (details)
41. allows multiple scalar for a metric in sol file (details)
42. fixes global nubmering (details)
43. adds tri to quad test case (details)
44. adds accept-tohex-diamond.sh to ref acceptance (details)
45. adds test to guide implementation (details)
46. cache faces for storing new verts (details)
47. adds twod faces when twod (details)
48. compute new tri nodes via faces for extension to 3D (details)
49. start collecting tet mid nodes (details)
50. forms hexes from tets (details)
51. includes 3D case in acceptance (details)
52. visualizes eigenvalues of reconstrcuted hessian (details)
53. computes scaling (details)
54. adds test for mixed case (details)
55. turns of adapt curvature constraint without geom (details)
56. uses sin50xy metric (details)
57. compatible spacing (details)
58. adds geoemetric spacing based on eigs (details)
59. radial geoemtric metric test (details)
60. reads node and face (details)
61. fixes index (details)
62. determines if bounding boxes overlap (details)
63. winds msh faces to outward normals (details)
64. creates a MSH file format version 2 (Legacy) via copy-n-paste (details)
65. corrects chat count of msh2 extension (details)
66. uses --aspect-ratio to set the LES target for hrles_fixed_point_metric (details)
67. reorder tests to mirror header (details)
68. implements ref_oct_split_touching (details)
69. fixed for one refinement (details)
70. check two levels (details)
71. scales bbox (details)
72. adds fixture and ref_oct_gradation (details)
73. target size should be 2x current diagonal (details)
74. saves original before enforcing gradation (details)
75. extracts macros for accessing children, nodes (details)
76. count leaves (details)
77. display nleaf (details)
78. reports occupancy (details)
79. only export leaf nodes to tec (details)
80. reports leaves only (details)
81. node framework (details)
82. creates recursive node filler (details)
83. extracts ref_oct_bbox_corner (details)
84. insert corners into tree (details)
85. inserts nodes into c2n (details)
86. fixes array indexer (details)
87. inserts nodes (details)
88. tests one split unique nodes (details)
89. extends to setting corner nodes (details)
90. extracts xyz to ref_nodes (details)
91. starts the extraction method (details)
92. starts export to grid (details)
93. dumps hex (details)
94. extracts faces, dup quads (details)
95. fixes exort recursion (details)
96. export-option (details)
97. trim tree for set at (details)
98. only sets when new (details)
99. moves tree trimming out to interior nodes for speed (details)
100. adds realloc (details)
101. provides details on failure (details)
102. protects test under development (details)
103. reorder hex faces to line up with cart bbox directions (details)
104. simplifies cart quad export with face ordering (details)
105. winds extruded hex correctly (details)
106. extracts qu2 face index from he2 index (details)
107. renames subfunction (details)
108. adds break to prevent fall-through (details)
109. adds face nodes (details)
110. refactors toward local variables (details)
111. creates center nodes (details)
112. refactor local declare (details)
113. uses index (details)
114. extracts whole (details)
115. exports whole faces as pyrimid (details)
116. tec debug export (details)
117. swtichs to face test for steiner (details)
118. resurses the same (details)
119. extracts ref_oct_export_prism (details)
120. completes interior (details)
121. adds boundary to steiner hexes (details)
122. solver format (details)
123. turns test on without output files (details)
124. cleans-test (details)
125. adapts oct based on metric (details)
126. ref_oct_test --box h file gained an h (details)
127. refactor to extract ref_metric_sub_tet_complexity (details)
128. allows the tet nodes to be extracted from nodes (details)
129. computes mixed element complexity with sub tet (details)
130. passes correct extracted quad on boundary. fixes flow adapt (details)
131. o Inline consistent MPI configuration with build-tools to compile on summit (details)
132. o Add -I to mpi_include and -L to mpi_ldadd (details)
133. o Add library search path to MPI without wrapper (details)
134. adds wmles style mesh (details)
135. not-required (details)
136. removes --iles option, which has been replaced with --aspect-ratio (details)
137. extracts hessian_multiscale (details)
138. removes header for missing function (details)
139. removes the ref multiscale --combine option (details)
140. ref multiscale --aspect-ratio after local scaling to avoid changes to det (details)
141. removes the weight from ref_metric_lp and ref_metric_local_scale (details)
142. extracts ref_metric_sub_tri_complexity (details)
143. extends ref_metric_complexity to 2D quads (details)
144. adds aspect ratio lp (multiscale) (details)
145. uses ref_metric_limit_aspect_ratio always now that it is safe for default -1 (details)
146. reuse aspect_ratio and ref_metric_lp with aspect_ratio, spalding, cons visc (details)
147. does not define a local variable, use the one to be pased to use (details)
148. added fixed-point (details)
149. sets gcc build flags (details)
150. diagnose (details)
151. looks for non-finite values (details)
152. initializes metric before forming running sum (details)
153. format (details)
154. turns off debug for oct adapt to metric (details)
155. extends --yplus to --ypluslen that uses reference to revert to multiscale (details)
156. corrects blend logic (details)
157. scale y+ target by 1/alt equalateral tri (details)
158. adds twod brick interp test (details)
159. tests if same forks (details)
160. computes a second exchange location (details)
161. uses std interp for twod (details)
162. computes viscous length at 1 and 2 cell heights (details)
163. blends multiscle with yplus when viscous length sampling is different (details)
164. increases the blending region (details)
165. show debug info (details)
166. corrects the contribution to the two convex weights of yplus-target/multiscale (details)
167. widens the range of yplus-target usage (details)
168. improves debug stdout for tuning (details)
169. uses consisent input to stdout report (details)
170. removes a wayard half from h target (details)

uses HOME and gcc-12

makes seq clang

syncs gcc12

cleaned path

suppresses warn unused

to suppress gcc-12 warning, explictly allocate MPI_Status *status argument

expose method to parse meshb contents

adds analytic metrics for WMLES examples

matches FUN3D_INTG deps

uses newer 121-beta.2022.08.18.1700

fixes string

downgrade to ESP/121 for ringlib COMBINE

creates contains prototype

asserts outside root voxel

extracts child's bbox by index

checks a contained child

verifies other corner points

reuses ref_oct_child_bbox to avoid copy-paste

diag

returns bbox

return box for no child

starts split to

prints info

tests three levels of ref_oct_contains

quiets execution

simplfies by returning the result of the recersice ref_oct_contains_node from childern

refines oct to surf

adds accept test coverage for oct surf

cleans libsanitizer reported leaks

fixes wwait typo

uses loop index

reduce allocation to required for accept case

moves the free out of loop, still being used

reports the size of the octree

creates a hex-quad from tri placeholder

creates the nodes required on edges and tri

unifies the midnode create

converts tri to quad with ref translate --blockhead

subdivides edges for later extrusion

allows solb metric as multiple scalrs of correct size

allows multiple scalar for a metric in sol file

fixes global nubmering

adds tri to quad test case

adds accept-tohex-diamond.sh to ref acceptance

adds test to guide implementation

cache faces for storing new verts

adds twod faces when twod

compute new tri nodes via faces for extension to 3D

start collecting tet mid nodes

forms hexes from tets

includes 3D case in acceptance

visualizes eigenvalues of reconstrcuted hessian

computes scaling

adds test for mixed case

turns of adapt curvature constraint without geom

uses sin50xy metric

compatible spacing

adds geoemetric spacing based on eigs

radial geoemtric metric test

reads node and face

fixes index

determines if bounding boxes overlap

winds msh faces to outward normals

creates a MSH file format version 2 (Legacy) via copy-n-paste

corrects chat count of msh2 extension

uses --aspect-ratio to set the LES target for hrles_fixed_point_metric

reorder tests to mirror header

implements ref_oct_split_touching

fixed for one refinement

check two levels

scales bbox

adds fixture and ref_oct_gradation

target size should be 2x current diagonal

saves original before enforcing gradation

extracts macros for accessing children, nodes

count leaves

display nleaf

reports occupancy

only export leaf nodes to tec

reports leaves only

node framework

creates recursive node filler

extracts ref_oct_bbox_corner

insert corners into tree

inserts nodes into c2n

fixes array indexer

inserts nodes

tests one split unique nodes

extends to setting corner nodes

extracts xyz to ref_nodes

starts the extraction method

starts export to grid

dumps hex

extracts faces, dup quads

fixes exort recursion

export-option

trim tree for set at

only sets when new

moves tree trimming out to interior nodes for speed

adds realloc

provides details on failure

protects test under development

reorder hex faces to line up with cart bbox directions

simplifies cart quad export with face ordering

winds extruded hex correctly

extracts qu2 face index from he2 index

renames subfunction

adds break to prevent fall-through

adds face nodes

refactors toward local variables

creates center nodes

refactor local declare

uses index

extracts whole

exports whole faces as pyrimid

tec debug export

swtichs to face test for steiner

resurses the same

extracts ref_oct_export_prism

completes interior

adds boundary to steiner hexes

solver format

turns test on without output files

cleans-test

adapts oct based on metric

ref_oct_test --box h file gained an h

refactor to extract ref_metric_sub_tet_complexity

allows the tet nodes to be extracted from nodes

computes mixed element complexity with sub tet

passes correct extracted quad on boundary. fixes flow adapt

o Inline consistent MPI configuration with build-tools to compile on summit

o Add -I to mpi_include and -L to mpi_ldadd

o Add library search path to MPI without wrapper

adds wmles style mesh

not-required

removes --iles option, which has been replaced with --aspect-ratio

extracts hessian_multiscale

removes header for missing function

removes the ref multiscale --combine option

ref multiscale --aspect-ratio after local scaling to avoid changes to det

removes the weight from ref_metric_lp and ref_metric_local_scale

extracts ref_metric_sub_tri_complexity

extends ref_metric_complexity to 2D quads

adds aspect ratio lp (multiscale)

uses ref_metric_limit_aspect_ratio always now that it is safe for default -1

reuse aspect_ratio and ref_metric_lp with aspect_ratio, spalding, cons visc

does not define a local variable, use the one to be pased to use

added fixed-point

sets gcc build flags

diagnose

looks for non-finite values

initializes metric before forming running sum

format

turns off debug for oct adapt to metric

extends --yplus to --ypluslen that uses reference to revert to multiscale

corrects blend logic

scale y+ target by 1/alt equalateral tri

adds twod brick interp test

tests if same forks

computes a second exchange location

uses std interp for twod

computes viscous length at 1 and 2 cell heights

blends multiscle with yplus when viscous length sampling is different

increases the blending region

show debug info

corrects the contribution to the two convex weights of yplus-target/multiscale

widens the range of yplus-target usage

improves debug stdout for tuning

uses consisent input to stdout report

removes a wayard half from h target