Started 2 yr 10 mo ago
Took 37 sec on reynolds

Build clang,reynolds,python3,virtualenv (Dec 3, 2019, 12:25:47 PM)

Changes
  1. list to array fix in node ordering (details / bitbucketweb)
  2. removed testing statements from SING (details / bitbucketweb)
  3. multimodal gp plot (details / bitbucketweb)
  4. laplacian eigenvector graphs (details / bitbucketweb)
  5. modified truncation step to retain always old indices (details / bitbucketweb)
  6. left-over changes (details / bitbucketweb)
  7. started working on some examples (details / bitbucketweb)
  8. working on euler bernoulli (details / bitbucketweb)
  9. working on bod (details / bitbucketweb)
  10. started with the a sketch of the algorithm (details / bitbucketweb)
  11. working on algorithm (details / bitbucketweb)
  12. lazy map implementation for BOD (details / bitbucketweb)
  13. started algorithm for lazy map in Algorithms (details / bitbucketweb)
  14. working on banana (details / bitbucketweb)
  15. working on banana (details / bitbucketweb)
  16. soft truncation, i.e. nearly linear map works better than hard truncation (which does not work at all but in few cases) (details / bitbucketweb)
  17. playing with orders (details / bitbucketweb)
  18. working on the generation of the distribution (details / bitbucketweb)
  19. setup for Lorenz63 done (details / bitbucketweb)
  20. some fixes for sequential data assimilation (details / bitbucketweb)
  21. working on linear map approximation (details / bitbucketweb)
  22. figuring out what's wrong... (details / bitbucketweb)
  23. added testing of gradients for distributions (details / bitbucketweb)
  24. added tests for gradients of distributions and tried on Lorenz63 (details / bitbucketweb)
  25. working on forward Euler map (details / bitbucketweb)
  26. working on Forward Euler (details / bitbucketweb)
  27. fixed Lorenz63 and added ODEs discretization maps to the framework (details / bitbucketweb)
  28. started implementation of Lorenz 96 (details / bitbucketweb)
  29. working on Lorenz96 (details / bitbucketweb)
  30. added the possibility of skipping prediction steps by composing Euler maps (details / bitbucketweb)
  31. added rmse output for smoothing (details / bitbucketweb)
  32. lorenz 96 distribution ready (details / bitbucketweb)
  33. starting to generate distribution for Lorenz96 (details / bitbucketweb)
  34. dynamics generated correctly (details / bitbucketweb)
  35. working on the generator of maps with prescribed sparsity for L96 (details / bitbucketweb)
  36. working on the generator of maps with prescribed sparsity for L96 (details / bitbucketweb)
  37. working on loading maps for L96 (details / bitbucketweb)
  38. working on postprocessing (details / bitbucketweb)
  39. working on results for AGU (details / bitbucketweb)
  40. working on results for AGU (details / bitbucketweb)
  41. added missing files l96 (details / bitbucketweb)
  42. fixed documentation (details / bitbucketweb)
  43. gumbel example re-run for documentation (details / bitbucketweb)
  44. working on time plotting of l63 (details / bitbucketweb)
  45. fixed low-rank approximation for outer grad (lis) to not compute multiple likelihoods (details / bitbucketweb)
  46. fixed low-rank approximation for outer grad (lis) to not compute multiple likelihoods (details / bitbucketweb)
  47. working on reduced basis extraction (details / bitbucketweb)
  48. working on reduced basis extraction (details / bitbucketweb)
  49. working on low-rank filter (details / bitbucketweb)
  50. working on low-rank for filtering (details / bitbucketweb)
  51. working on generation of maps for low-rank approximations (details / bitbucketweb)
  52. working on generation of maps for low-rank approximations (details / bitbucketweb)
  53. experimenting with low-rank (details / bitbucketweb)
  54. working on low-rank l96 (details / bitbucketweb)
  55. working on low-rank l96 (details / bitbucketweb)
  56. working on L96 M2 (details / bitbucketweb)
  57. working on L96 M2 (details / bitbucketweb)
  58. working on L96 M2 (details / bitbucketweb)
  59. working on gradient of L96 model II (details / bitbucketweb)
  60. cython implementation of gradient works (details / bitbucketweb)
  61. action of hessian works for L96 model 2 (details / bitbucketweb)
  62. working on preconditioning (details / bitbucketweb)
  63. working on l96 m2 (details / bitbucketweb)
  64. working on l96 m2 (details / bitbucketweb)
  65. running l96 m2 (details / bitbucketweb)
  66. preparing linear maps for low-rank model (details / bitbucketweb)
  67. re-factoring some nomenclature for hidden Markov chains (details / bitbucketweb)
  68. re-factoring some nomenclature for hidden Markov chains (details / bitbucketweb)
  69. modal l96 model 2 done (details / bitbucketweb)
  70. fixed tmap-seq-tm (details / bitbucketweb)
  71. working on filtering preconditioning (details / bitbucketweb)
  72. preconditioning through filter almost works (details / bitbucketweb)
  73. working on both l96 and l63 (details / bitbucketweb)
  74. filter preconditioning works!! (details / bitbucketweb)
  75. prepared filtering preconditioning for l96 (details / bitbucketweb)
  76. preconditioning through filtering works for l96 (details / bitbucketweb)
  77. mpi_map now updates automatically the counters of the methods called on an object (details / bitbucketweb)
  78. l96 with filter preconditioning works. NEXT: remove 1st step of smoother (first lag-1 smoothing) and substitute with the regular step using the 0-th filtering (0-th step inference problem) (details / bitbucketweb)
  79. removed skip-first and made 0th step to be included in the final map. So the first map in the composition does not involve a transition (details / bitbucketweb)
  80. working on combination of filt preconditioner and low-rank preconditioner (details / bitbucketweb)
  81. low-rank preconditioning works with filter preconditioning (details / bitbucketweb)
  82. working on lr l96 (details / bitbucketweb)
  83. working on l96 (details / bitbucketweb)
  84. working on l96 lr (details / bitbucketweb)
  85. going.. (details / bitbucketweb)
  86. working on banded maps (details / bitbucketweb)
  87. fixed unit tests for test_derivatives functions (details / bitbucketweb)
  88. now LinearSpanApproximation uses a semilattice for multiindex and coefficients storage (details / bitbucketweb)
  89. passing tests (details / bitbucketweb)
  90. semilattice constructors exposed in default transport map constructors (details / bitbucketweb)
  91. experimenting low-rank subspace ideas (details / bitbucketweb)
  92. fixed init coeffs bug (details / bitbucketweb)
  93. fixed semilattice data structure for serialization (details / bitbucketweb)
  94. fixed bugs in tests (details / bitbucketweb)
  95. reshaped tests (details / bitbucketweb)
  96. passes all tests (details / bitbucketweb)
  97. working on fv linear candidate map (details / bitbucketweb)
  98. semilattices integrated into adaptivity. To be tested! The spirit is there though. (details / bitbucketweb)
  99. semilattices integrated into adaptivity algorithm. fixes #92 (details / bitbucketweb)
  100. changed format of semilattices for linear span (details / bitbucketweb)
  101. changed format of semilattices for linear span (details / bitbucketweb)
  102. fixed callback parameter minimize kl. (details / bitbucketweb)
  103. changed active_set to SortedSet to preserve iteration order after serialization (for parallel computing purposes) (details / bitbucketweb)
  104. added LinearSpanVertex to the exposed classes (details / bitbucketweb)
  105. fixed bug in LinearMap (defined twice...) (details / bitbucketweb)
  106. working on constructor (details / bitbucketweb)
  107. started on poisson (details / bitbucketweb)
  108. working on runner for poisson (details / bitbucketweb)
  109. embedding the deep lazy map construction into the builder cycle (details / bitbucketweb)
  110. transformed tmap-tm in the logic of CLI. to be tested by doing... (details / bitbucketweb)
  111. restructuring all the building architecture (details / bitbucketweb)
  112. restructuring of building architecture done. todo on sequential algorithm as well. (details / bitbucketweb)
  113. working on reshaping of builders (details / bitbucketweb)
  114. some fixes after big merge. Going to branch off this in order to debug and work on Lazy maps at the same time (details / bitbucketweb)
  115. working on the runner for lazy maps (details / bitbucketweb)
  116. fixing here and there (details / bitbucketweb)
  117. working on the lazy map script (details / bitbucketweb)
  118. working on scripts for lazy maps (details / bitbucketweb)
  119. working on scripts for lazy maps (details / bitbucketweb)
  120. fixing new interface (details / bitbucketweb)
  121. testing tmap-deep-lazy-tm (details / bitbucketweb)
  122. testing tmap-deep-lazy-tm (details / bitbucketweb)
  123. testing... (details / bitbucketweb)
  124. script runs (details / bitbucketweb)
  125. working on poisson with lazy maps (details / bitbucketweb)
  126. working on poisson with lazy maps (details / bitbucketweb)
  127. working on poisson problem (details / bitbucketweb)
  128. working on taxonomy structure (details / bitbucketweb)
  129. added missing file (details / bitbucketweb)
  130. fixes for cse presentation on Lazy maps (details / bitbucketweb)
  131. ... (details / bitbucketweb)
  132. going on with taxonomy (details / bitbucketweb)
  133. working on distributions (details / bitbucketweb)
  134. ... (details / bitbucketweb)
  135. working on taxonomy for distributions (details / bitbucketweb)
  136. working on taxonomy (details / bitbucketweb)
  137. advancing with distributions (details / bitbucketweb)
  138. working on decomposable distributions... (details / bitbucketweb)
  139. working on decomposable taxonomy (details / bitbucketweb)
  140. working on Maps (details / bitbucketweb)
  141. ... (details / bitbucketweb)
  142. ... (details / bitbucketweb)
  143. added Functionals module (details / bitbucketweb)
  144. done with Functionals (details / bitbucketweb)
  145. adde Likelihoods (details / bitbucketweb)
  146. fixed edge (details / bitbucketweb)
  147. Started with the refactoring of the code... Things breaks from here... (details / bitbucketweb)
  148. working on Maps module refactoring (details / bitbucketweb)
  149. ... (details / bitbucketweb)
  150. ... (details / bitbucketweb)
  151. started working on TriangularCompoentwiseTransportMap (details / bitbucketweb)
  152. ... (details / bitbucketweb)
  153. ... (details / bitbucketweb)
  154. ... (details / bitbucketweb)
  155. working on ListCompositeTransportMapBase (details / bitbucketweb)
  156. done with ListCompositeTransportMap (details / bitbucketweb)
  157. done with InverseTransportMap (details / bitbucketweb)
  158. ... (details / bitbucketweb)
  159. working on AffineMaps (details / bitbucketweb)
  160. ... (details / bitbucketweb)
  161. ... (details / bitbucketweb)
  162. ... (details / bitbucketweb)
  163. ... (details / bitbucketweb)
  164. starting with debugging of Maps (details / bitbucketweb)
  165. starting with debugging of Maps (details / bitbucketweb)
  166. ... (details / bitbucketweb)
  167. unit testing Maps (details / bitbucketweb)
  168. working on unittest Maps (details / bitbucketweb)
  169. working on unit tests... (details / bitbucketweb)
  170. working on unittests (details / bitbucketweb)
  171. passes test_transportmaps (details / bitbucketweb)
  172. fixed most of unittests... (details / bitbucketweb)
  173. some other fixes (details / bitbucketweb)
  174. working on distributions (details / bitbucketweb)
  175. distributions done (details / bitbucketweb)
  176. adding missing file (details / bitbucketweb)
  177. working on Functionals (details / bitbucketweb)
  178. testing Functionals (details / bitbucketweb)
  179. updated distribution (details / bitbucketweb)
  180. some fixed (details / bitbucketweb)
  181. fixing unittests (details / bitbucketweb)
  182. some fixes (details / bitbucketweb)
  183. working on reaction diffusion problem (details / bitbucketweb)
  184. working on pdes (details / bitbucketweb)
  185. fitz hugh (details / bitbucketweb)
  186. still picking a pde... (details / bitbucketweb)
  187. left two l2 minimization errors... (details / bitbucketweb)
  188. passes all tests (details / bitbucketweb)
  189. picking pde... (details / bitbucketweb)
  190. added missing file (details / bitbucketweb)
  191. working on Burgers test problem (details / bitbucketweb)
  192. working on burgers; (details / bitbucketweb)
  193. working on Burgers (details / bitbucketweb)
  194. working on Burgers (details / bitbucketweb)
  195. generating distribution (details / bitbucketweb)
  196. working on burgers Laplace approximation (details / bitbucketweb)
  197. fix committed for mpi with inverse from samples. The mpi_pool is not attached to objects anymore (so that it will be never serialized), but passed along with parameters (details / bitbucketweb)
  198. additional fixes (details / bitbucketweb)
  199. working on Burgers (details / bitbucketweb)
  200. adding Hessian (details / bitbucketweb)
  201. added plotting of generated samples (details / bitbucketweb)
  202. working on Burgers (details / bitbucketweb)
  203. modified gradboot stopping criterion (details / bitbucketweb)
  204. updates... (details / bitbucketweb)
  205. fixed semilattice handling in adaptation and many other things.. (details / bitbucketweb)
  206. adding TC setting for Poisson equation (details / bitbucketweb)
  207. working on Poisson (details / bitbucketweb)
  208. ... (details / bitbucketweb)
  209. adjoint of log-likelihood cost works... (details / bitbucketweb)
  210. working on Poisson generation (details / bitbucketweb)
  211. working on transforming Functionals into Maps (details / bitbucketweb)
  212. moving Functionals into Maps (details / bitbucketweb)
  213. updated taxonomy... needs to reflect the fact that Functionals is a submodule of Maps (details / bitbucketweb)
  214. fixed taxonomy (details / bitbucketweb)
  215. fixing unit tests (details / bitbucketweb)
  216. added deprecation message if importing TransportMaps.Functionals (details / bitbucketweb)
  217. working on unittests and fixed some docs (details / bitbucketweb)
  218. fixed dependencies (details / bitbucketweb)
  219. passing unit tests (details / bitbucketweb)
  220. added speed test for Poisson (details / bitbucketweb)
  221. working on Poisson (details / bitbucketweb)
  222. working on Poisson. Introduced action_grad_x in order to speed up in certain cases (details / bitbucketweb)
  223. making Functionals into maps with output in one dimension. This will allow the use of all the machinery available for maps (composition etc) also for functionals... (details / bitbucketweb)
  224. working on unit tests... (details / bitbucketweb)
  225. added title to taxonomy (details / bitbucketweb)
  226. all tests pass (details / bitbucketweb)
  227. fixed merge with Functionals->Maps. Working on Poisson. Fixed taxonomy. (details / bitbucketweb)
  228. RejectionSampler + multi dim uniform (details / bitbucketweb)
  229. working on poisson (details / bitbucketweb)
  230. working on dimension reduction... (details / bitbucketweb)
  231. working on poisson (details / bitbucketweb)
  232. working on Cantilever (details / bitbucketweb)
  233. adding missing file (details / bitbucketweb)
  234. working on timoshenko (details / bitbucketweb)
  235. working on banana (details / bitbucketweb)
  236. working on lazy with identity tails (details / bitbucketweb)
  237. lazy maps have now an identity tail (details / bitbucketweb)
  238. working on timoshenko (details / bitbucketweb)
  239. working on the generation of the target distribution (details / bitbucketweb)
  240. working on Timoshenko distribution (details / bitbucketweb)
  241. added puwr ess routine :) (details / bitbucketweb)
  242. timoshenko... (details / bitbucketweb)
  243. working on timoshenko (details / bitbucketweb)
  244. working on timoshenko (details / bitbucketweb)
  245. timoshenko set up done (details / bitbucketweb)
  246. timoshenko works O_O' (details / bitbucketweb)
  247. postprocessing timoshenko (details / bitbucketweb)
  248. working on timoshenko (details / bitbucketweb)
  249. hard truncation is back.. (details / bitbucketweb)
  250. improved action_grad_x with action_adjoint_grad_x to compute gradients left to right if output < input (details / bitbucketweb)
  251. improved action_grad_x with action_adjoint_grad_x to compute gradients left to right if output < input (details / bitbucketweb)
  252. implementing missing adjoint functions (details / bitbucketweb)
  253. Done with LogCox for Lazy maps (details / bitbucketweb)
  254. working on cantilever (details / bitbucketweb)
  255. staring with Poisson (details / bitbucketweb)
  256. added IdentityEmbeddedParametricTransprotMap and made minimize_kl_divergence general for any parametric transport map (details / bitbucketweb)
  257. added dolfin version markers/warnings for solvers (details / bitbucketweb)
  258. modified ess reporting (details / bitbucketweb)
  259. working on timoshenko (details / bitbucketweb)
  260. going on with plots (details / bitbucketweb)
  261. timoshenko plots (details / bitbucketweb)
  262. poisson plots (details / bitbucketweb)
  263. preparing code for submission NIPS (details / bitbucketweb)
  264. working on Poisson... (details / bitbucketweb)
  265. modified poisson distribution (with diagonal likielihood) to allow for lis type model reduction (details / bitbucketweb)
  266. Laplace approximation log output to INFO (details / bitbucketweb)
  267. test-source.sh added PATH for Jenkins (details / bitbucketweb)
  268. update setup (details / bitbucketweb)
  269. updating setup (details / bitbucketweb)
  270. updating default map call (details / bitbucketweb)
  271. working on poisson (details / bitbucketweb)
  272. updating to TMv3 (details / bitbucketweb)
  273. updating hess x to TM v3 (details / bitbucketweb)
  274. updating numerical examples for SING (details / bitbucketweb)
  275. fixing tests (details / bitbucketweb)
  276. fixed unit tests (details / bitbucketweb)
  277. added pip install cython in jenkins script (details / bitbucketweb)
  278. added .pyx to the manifest (details / bitbucketweb)
  279. updated jenkins script (details / bitbucketweb)
  280. working on jenkins script (details / bitbucketweb)
  281. passing all tests and updated jenkins scripts (details / bitbucketweb)
  282. fixed construction script (details / bitbucketweb)
  283. made CYTHON submodules optional (details / bitbucketweb)
  284. made CYTHON submodules optional (details / bitbucketweb)
  285. workign on random rotations (details / bitbucketweb)
  286. working on LogisticRegression model (details / bitbucketweb)
  287. working on parkinson (details / bitbucketweb)
  288. done likelikhood (details / bitbucketweb)
  289. distribution generation done (details / bitbucketweb)
  290. working on results for logit problem (details / bitbucketweb)
  291. working on differente settings for parkinson (details / bitbucketweb)
  292. working on posterior predictive (details / bitbucketweb)
  293. mod to logit likelihood (details / bitbucketweb)
  294. working on stan example (details / bitbucketweb)
  295. working on stan example (details / bitbucketweb)
  296. fixed bug in adjoint_grad_x for composite maps (details / bitbucketweb)
  297. working on parkinson dataset (details / bitbucketweb)
  298. working on parkinson data set (details / bitbucketweb)
  299. fixed log-likelihood for logistic regression models with log(1+\eps) approximation (details / bitbucketweb)
  300. fixed bug in hess_x_log_pullback function (details / bitbucketweb)
  301. renamed aux for windows benefit... (details / bitbucketweb)
  302. auxiliary.... (details / bitbucketweb)

Started by upstream project TransportMaps-private-develop-mpi build number 130
originally caused by:

Revision: 7779cc167681b4b73d30ad1188ac9535c25af93e
Repository: git@bitbucket.org:dabi86/transportmaps-private.git
  • refs/remotes/origin/develop/master