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Summary

  1. satellite changes (details)
  2. dont need to append to log (details)
  3. updated installation procedure and added toggle sections (details)
  4. updated sphinx requirements (details)
  5. updated docs MonotLinSpanApprox and increased size UML diagrams (details)
  6. bug fixed in grad_a_hess_x_log_det_grad_x, matrix slots matplotlib files (details)
  7. updated documentation (details)
  8. updating documentation (details)
  9. improved slides for BOD example (details)
  10. updated bod with figures and stochastic volatility (details)
  11. imporved upload script and fixed visualization problem in bod (details)
  12. fixes #76 (details)
  13. modified tolerances (details)
  14. working on conditional probabilities (details)
  15. working on factorized distributions (details)
  16. factorized distribution works (details)
  17. independent likelihood added (details)
  18. working on stochastic volatility test case (details)
  19. derivatives of stoc vol works. TODO: fix the Markov components (details)
  20. working on markov components (details)
  21. working on hessian of markov component... (details)
  22. fixed hessian for markov component and checked stoch vol example works (details)
  23. working on statistical models (details)
  24. working on distribution docs (details)
  25. moved FactorizedDistribution to DistributionBase (details)
  26. working on loglikelihoods (details)
  27. Additive models and addive linear Gaussian models added in the (details)
  28. made a dedicated submodule for likelihoods (details)
  29. moved likelihoods out of functionals (more intuitive) (details)
  30. working on linear inertial navigation system model (details)
  31. working on assimilation example (details)
  32. fixing markov component (details)
  33. ok tests markov component (details)
  34. AR1TransDistr works (details)
  35. done with data assimilation construction example (details)
  36. Updated version: v1.0b2 (details)
  37. added missing files and removed api-files which must be automatically (details)
  38. updated ignore file (details)
  39. fixing import issue (details)
  40. fixing import issue (details)
The file was modified Examples/research/sparsity/algorithm/run_SING_satellite.py (diff)
Commit 36eef3c19290188f8889cefe06e81d74ecf57e81 by rebeccae.morrison
dont need to append to log
The file was modified Examples/research/sparsity/algorithm/Algorithm.py (diff)
Commit ae79674a92bbe035ef8352d7a0701f4e606c94a2 by dabi
updated installation procedure and added toggle sections
The file was modified Docs/conf3/conf.py (diff)
The file was modified Docs/source/credits.rst (diff)
The file was modified setup.py (diff)
The file was modified Docs/source/install.rst (diff)
Commit bbd60ad17fec4473281dc1308ee01df493c415f8 by dabi
updated sphinx requirements
The file was modified requirements-SPHINX.txt (diff)
Commit 007b1dee21fa00b0a683eef68c8bdde6b1fc5b41 by dabi
updated docs MonotLinSpanApprox and increased size UML diagrams
The file was modified Docs/conf3/conf.py (diff)
The file was modified TransportMaps/Functionals/MonotonicFunctionApproximations.py (diff)
Commit 5743d47dc3c38ade92e69a5477d665beee869f0f by rebeccae.morrison
bug fixed in grad_a_hess_x_log_det_grad_x, matrix slots matplotlib files
and stochastic volatility code updated for nips
The file was addedExamples/research/sparsity/algorithm/run_sing_genes.py
The file was addedExamples/research/sparsity/algorithm/run_sing_stochvol.py
The file was modified TransportMaps/Maps/TriangularTransportMapBase.py (diff)
The file was modified TransportMaps/tests/test_transportmaps.py (diff)
The file was modified Examples/research/sparsity/algorithm/run_SING_satellite.py (diff)
The file was modified Examples/research/sparsity/post_processing/color-matrix.py (diff)
The file was addedExamples/research/sparsity/post_processing/color-matrix-satellite.py
The file was modified TransportMaps/tests/test_functions.py (diff)
The file was addedExamples/research/sparsity/post_processing/color-matrix-modrad.py
Commit 5357da1f510d894546df926c7ab9ffc136ff7835 by dabi
updated documentation
The file was modified Docs/source/examples-direct-transport.rst (diff)
The file was modified Docs/source/examples-transport-from-samples.rst (diff)
The file was modified Docs/source/cli/cli.ipynb (diff)
The file was modified Docs/source/examples.rst (diff)
The file was modified Docs/source/example-inverse-stochastic-volatility-6d.ipynb (diff)
The file was modified Docs/source/example-sequential-stocvol-6d.ipynb (diff)
The file was modified Docs/source/example-inverse-gumbel-1d.ipynb (diff)
The file was modified Docs/source/example-banana-2d.ipynb (diff)
The file was modified Docs/source/example-beta-1d.ipynb (diff)
The file was modified Docs/source/other-refs.bib (diff)
The file was modified Docs/source/example-BOD-4d.ipynb (diff)
The file was modified Docs/source/xml-descriptors.ipynb (diff)
The file was modified Docs/source/example-gumbel-1d.ipynb (diff)
Commit 06502a57ee1859ad01cafd49cebe549732106ce5 by dabi
updating documentation
The file was modified Docs/source/example-BOD-4d.ipynb (diff)
Commit 8da0d0aaec3c246ad2b9b026ad6d0c4cface6849 by dabi
improved slides for BOD example
The file was modified Docs/source/example-BOD-4d.ipynb (diff)
Commit a436775a6d564e3cba5adfd54a5c19365b1d8dfd by dabi
updated bod with figures and stochastic volatility
The file was addedDocs/source/Figures/BOD/samples.jpg
The file was modified Docs/source/example-sequential-stocvol-6d.ipynb (diff)
The file was addedDocs/source/Figures/BOD/PatchWork.xcf
The file was addedDocs/source/Figures/BOD/Marlborough_East_Wastewater_Treatment_Plant_Aerial.JPG
The file was addedDocs/source/Figures/BOD/BOD_test_bottles.jpg
The file was addedDocs/source/Figures/BOD/Influent_raw_wastewater.jpg
The file was modified Docs/source/example-BOD-4d.ipynb (diff)
The file was addedDocs/source/Figures/BOD/PatchWork.png
Commit ffc135142d2ae82ad5472a0a52a167c4d844fbe0 by dabi
imporved upload script and fixed visualization problem in bod
The file was modified Docs/source/example-BOD-4d.ipynb (diff)
The file was modified docs-upload.sh (diff)
The file was modified Examples/research/sparsity/algorithm/run_sing_stochvol.py (diff)
The file was modified TransportMaps/Maps/TriangularTransportMapBase.py (diff)
The file was modified TransportMaps/tests/test_transportmaps.py (diff)
The file was modified Examples/research/sparsity/algorithm/Algorithm.py (diff)
Commit 8f2446a55ff544a94d54c5d5883d88a16ebbae63 by dabi
modified tolerances
The file was modified TransportMaps/tests/test_L2_misfit.py (diff)
The file was modified TransportMaps/tests/test_transportmaps.py (diff)
Commit 3ffa8b08b757847e8da9ebd832034bdb70ede5d1 by dabi
working on conditional probabilities
The file was modified TransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.py (diff)
The file was modified TransportMaps/Distributions/Examples/StochasticVolatility/StocVolHyperDistributions.py (diff)
The file was modified TransportMaps/Distributions/DistributionBase.py (diff)
Commit 6c54f4e746f1de0b67442b56fae6b2367a7fc7de by dabi
working on factorized distributions
The file was modified TransportMaps/Distributions/Examples/__init__.py (diff)
The file was modified TransportMaps/Distributions/DistributionBase.py (diff)
The file was modified TransportMaps/tests/test_distributions.py (diff)
Commit 05405c8bc3729c41a9569054679f6c1ad5e66dfc by dabi
factorized distribution works
The file was modified TransportMaps/tests/test_distributions.py (diff)
The file was modified TransportMaps/Distributions/DistributionBase.py (diff)
Commit 2d8c6517e0a35fe74abaf11ba1d9aa9004b5d986 by dabi
independent likelihood added
The file was modified TransportMaps/Distributions/DistributionBase.py (diff)
The file was modified TransportMaps/Functionals/LikelihoodBase.py (diff)
The file was addedTransportMaps/Distributions/Examples/SimpleDistributions.py
The file was modified TransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.py (diff)
The file was addedTransportMaps/Distributions/Decomposable/FactorizedDistributionBase.py
The file was modified TransportMaps/Distributions/Decomposable/__init__.py (diff)
Commit e246945dedbe678613855e2c5a77f9e81555b450 by dabi
working on stochastic volatility test case
The file was modified TransportMaps/Functionals/LikelihoodBase.py (diff)
The file was modified TransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.py (diff)
The file was modified TransportMaps/Distributions/Examples/StochasticVolatility/StocVolHyperDistributions.py (diff)
The file was modified TransportMaps/tests/test_distributions.py (diff)
Commit bf6eb1edd3d043fdcfc5f7ff033189b059a4fd8d by dabi
derivatives of stoc vol works. TODO: fix the Markov components
The file was modified TransportMaps/tests/test_distributions.py (diff)
The file was modified TransportMaps/Distributions/Examples/StochasticVolatility/StocVolHyperDistributions.py (diff)
Commit ab32d7822023cc31afa54e366c89a7c3f0621758 by dabi
working on markov components
The file was modified TransportMaps/tests/test_distributions.py (diff)
The file was modified TransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.py (diff)
Commit afb7169268a962e03b4b3b0edf92729f85161b8a by dabi
working on hessian of markov component...
The file was modified TransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.py (diff)
The file was modified TransportMaps/Functionals/LikelihoodBase.py (diff)
The file was modified TransportMaps/tests/test_distributions.py (diff)
The file was modified TransportMaps/Maps/TriangularTransportMaps.py (diff)
Commit 2fcffe141a81dd107166f112f42b739516a373c3 by dabi
fixed hessian for markov component and checked stoch vol example works
The file was modified Docs/source/example-sequential-stocvol-6d.ipynb (diff)
The file was modified TransportMaps/tests/test_laplace.py (diff)
The file was modified TransportMaps/tests/test_L2_minimization.py (diff)
The file was modified TransportMaps/tests/test_transportmaps.py (diff)
The file was modified TransportMaps/tests/test_transportmap_distributions.py (diff)
The file was modified TransportMaps/tests/test_all.py (diff)
The file was modified TransportMaps/tests/test_kl_divergence.py (diff)
The file was modified TransportMaps/tests/test_L2_misfit.py (diff)
The file was modified TransportMaps/tests/test_kl_minimization.py (diff)
The file was modified TransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.py (diff)
The file was modified TransportMaps/tests/test_functions.py (diff)
The file was modified TransportMaps/tests/test_transportmap_distributions_sampling.py (diff)
The file was modified TransportMaps/tests/test_distributions.py (diff)
Commit 5d95d094a78a780c13eefa3b136bf91073aa1348 by dabi
working on statistical models
The file was modified Docs/source/api-TransportMaps-Distributions-Examples.rst (diff)
The file was modified Docs/source/api-TransportMaps-Functionals.rst (diff)
The file was addedDocs/source/pm-bayesian-inference.ipynb
The file was addedDocs/source/pm-data-assimilation.ipynb
The file was modified Docs/source/api-TransportMaps-Distributions-Decomposable.rst (diff)
The file was addedDocs/source/statistical-models.rst
The file was addedDocs/source/pm-distributions.ipynb
The file was modified Docs/source/tutorial.rst (diff)
The file was modified Docs/source/api-TransportMaps-Distributions.rst (diff)
The file was modified Docs/source/api-TransportMaps-Distributions-Examples-StochasticVolatility.rst (diff)
Commit 6e609b5d6ecacc9672917f72745bc92b77c8b477 by dabi
working on distribution docs
The file was modified Docs/source/pm-distributions.ipynb (diff)
Commit ca5e5d82dd2e239ffd8714030b18743caf92b3e4 by dabi
moved FactorizedDistribution to DistributionBase
The file was modified TransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.py (diff)
The file was modified TransportMaps/Distributions/Decomposable/__init__.py (diff)
The file was modified TransportMaps/tests/test_distributions.py (diff)
The file was modified TransportMaps/Distributions/DistributionBase.py (diff)
Commit dfb4191ad65271c7b9e0856d811bdbf9098f331c by dabi
working on loglikelihoods
The file was modified TransportMaps/Maps/TransportMapBase.py (diff)
The file was modified Docs/source/pm-distributions.ipynb (diff)
The file was modified TransportMaps/Functionals/LikelihoodBase.py (diff)
The file was modified Docs/source/api-TransportMaps-Distributions.rst (diff)
The file was addedTransportMaps/Maps/MapBase.py
The file was modified Docs/source/pm-bayesian-inference.ipynb (diff)
The file was modified Docs/source/api-TransportMaps-Distributions-Decomposable.rst (diff)
Commit 4d6c2e8b451e22cf8c6216e36baaa86e2623772d by dabi
Additive models and addive linear Gaussian models added in the
Likelihood models
The file was modified TransportMaps/Maps/FrozenTriangularTransportMaps.py (diff)
The file was modified TransportMaps/Maps/MapBase.py (diff)
The file was modified TransportMaps/Maps/TriangularTransportMaps.py (diff)
The file was modified TransportMaps/Functionals/LikelihoodBase.py (diff)
The file was modified TransportMaps/Maps/TriangularTransportMapBase.py (diff)
The file was modified TransportMaps/Distributions/FrozenDistributions.py (diff)
The file was modified TransportMaps/tests/test_distributions.py (diff)
The file was modified TransportMaps/Distributions/Inference/InferenceBase.py (diff)
Commit 274798d3da34700e8e008f36afa839cf49ba532e by dabi
made a dedicated submodule for likelihoods
The file was removedTransportMaps/Functionals/LikelihoodBase.py
The file was addedTransportMaps/Functionals/Likelihoods/LikelihoodBase.py
The file was modified TransportMaps/tests/test_distributions.py (diff)
The file was modified TransportMaps/Distributions/Examples/StochasticVolatility/StocVolHyperDistributions.py (diff)
The file was addedTransportMaps/Functionals/Likelihoods/__init__.py
The file was modified TransportMaps/Functionals/__init__.py (diff)
The file was modified TransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.py (diff)
Commit 86c1f4ac78caf01d93654a1d67504bb031fbcdf7 by dabi
moved likelihoods out of functionals (more intuitive)
The file was modified TransportMaps/Maps/__init__.py (diff)
The file was modified Docs/source/api-TransportMaps-Maps.rst (diff)
The file was modified TransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.py (diff)
The file was removedTransportMaps/Functionals/Likelihoods/LikelihoodBase.py
The file was modified TransportMaps/tests/test_distributions.py (diff)
The file was modified TransportMaps/__init__.py (diff)
The file was addedTransportMaps/Likelihoods/__init__.py
The file was removedTransportMaps/Functionals/Likelihoods/__init__.py
The file was modified TransportMaps/Distributions/Examples/StochasticVolatility/StocVolHyperDistributions.py (diff)
The file was modified TransportMaps/Functionals/__init__.py (diff)
The file was modified Docs/source/pm-bayesian-inference.ipynb (diff)
The file was modified Docs/source/api-TransportMaps-Functionals.rst (diff)
The file was addedTransportMaps/Likelihoods/LikelihoodBase.py
Commit 486c5b792b9e6d64090d8c4de55378b9ba7b6e35 by dabi
working on linear inertial navigation system model
The file was modified TransportMaps/Likelihoods/LikelihoodBase.py (diff)
The file was modified Docs/source/api-TransportMaps.rst (diff)
The file was modified Docs/source/pm-bayesian-inference.ipynb (diff)
The file was modified Docs/source/pm-data-assimilation.ipynb (diff)
The file was modified Docs/source/api-TransportMaps-Functionals.rst (diff)
The file was modified Docs/source/other-refs.bib (diff)
Commit 79255596493d757d53405b6853926e19baf1e36c by dabi
working on assimilation example
The file was modified Docs/source/pm-data-assimilation.ipynb (diff)
Commit cff2e075bf2567359dfe466f3adcbec8a7992646 by dabi
 fixing markov component
The file was modified TransportMaps/Distributions/DistributionBase.py (diff)
The file was modified TransportMaps/FiniteDifference.py (diff)
The file was modified TransportMaps/tests/test_distributions.py (diff)
The file was modified TransportMaps/tests/test_transportmaps.py (diff)
The file was removedTransportMaps/Distributions/Decomposable/FactorizedDistributionBase.py
The file was modified TransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.py (diff)
The file was modified Docs/source/pm-data-assimilation.ipynb (diff)
The file was modified TransportMaps/Distributions/Examples/SimpleDistributions.py (diff)
Commit d5587b8c9802c2f73317b0e50ae74f2758400cb4 by dabi
ok tests markov component
The file was modified TransportMaps/tests/test_distributions.py (diff)
Commit 8a557fbd10b9b32062820e3386519067cf9658b6 by dabi
AR1TransDistr works
The file was modified Docs/source/example-sequential-stocvol-6d.ipynb (diff)
The file was modified Docs/source/example-banana-2d.ipynb (diff)
The file was modified TransportMaps/tests/test_distributions.py (diff)
The file was modified TransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.py (diff)
Commit 05b75144a3e8451d213cdd2b33f4a0bf4e86a423 by dabi
done with data assimilation construction example
The file was modified TransportMaps/Distributions/DistributionBase.py (diff)
The file was modified Docs/source/api-TransportMaps-Distributions-Decomposable.rst (diff)
The file was modified Docs/source/pm-data-assimilation.ipynb (diff)
The file was modified TransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.py (diff)
Commit 37d4d130cf594d06bed72622a8e8f7afb3a04feb by dabi
Updated version: v1.0b2
The file was modified Docs/conf3/conf.py (diff)
The file was modified TransportMaps/_version.py (diff)
Commit 0e1e1f33125b00ea92ac417234a360826c37e9ee by dabi
added missing files and removed api-files which must be automatically
generated
The file was removedDocs/source/api-TransportMaps-Diagnostics.rst
The file was addedDocs/source/Figures/working/dataAssimilation.svg
The file was removedDocs/source/api-TransportMaps-Samplers.rst
The file was removedDocs/source/api-TransportMaps-Functionals.rst
The file was removedDocs/source/api-TransportMaps.rst
The file was removedDocs/source/api-TransportMaps-Distributions-Examples-StochasticVolatility.rst
The file was removedDocs/source/api-TransportMaps-Distributions-Examples-LogGaussianCoxProcess.rst
The file was removedDocs/source/api-TransportMaps-Distributions-Decomposable.rst
The file was removedDocs/source/api-TransportMaps-Densities.rst
The file was removedDocs/source/api-TransportMaps-Distributions-Examples.rst
The file was removedDocs/source/api-TransportMaps-Distributions.rst
The file was removedDocs/source/api-TransportMaps-Maps.rst
The file was addedDocs/source/Figures/dataAssimilation.png
The file was removedDocs/source/api-TransportMaps-Diagnostic.rst
The file was removedDocs/source/api-TransportMaps-Maps-Decomposable.rst
The file was removedDocs/source/api-TransportMaps-tests.rst
The file was removedDocs/source/api-TransportMaps-Optimization.rst
The file was removedDocs/source/api-TransportMaps-XML.rst
The file was removedDocs/source/api-TransportMaps-Distributions-Examples-BiochemicalOxigenDemand.rst
The file was removedDocs/source/api-TransportMaps-Densities-Inference.rst
The file was removedDocs/source/api-TransportMaps-Distributions-Inference.rst
The file was removedDocs/source/api-TransportMaps-FiniteDifference.rst
The file was modified Docs/make3/build-api (diff)
The file was removedDocs/source/api-TransportMaps-CLI.rst
The file was removedDocs/source/api-TransportMaps-Algorithms.rst
The file was removedDocs/source/api-TransportMaps-Densities-Decomposable.rst
Commit 52d875ca9a583c9c164233fa9a21ab924f26183d by dabi
updated ignore file
The file was modified .gitignore (diff)
Commit c8c76f0a2472dfaea559bcc08a8a70aeb88f1404 by dabi
fixing import issue
The file was modified TransportMaps/Maps/TriangularTransportMapBase.py (diff)
The file was modified TransportMaps/__init__.py (diff)
Commit 3c74e6e5ab20d1ed84705f144b5f3b6bd06084da by dabi
fixing import issue
The file was modified TransportMaps/Maps/TriangularTransportMaps.py (diff)
The file was modified TransportMaps/Maps/FrozenTriangularTransportMaps.py (diff)