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Started by upstream project "SANS_Commit" build number 9809 originally caused by: Started by remote host 18.18.33.14 Running as SYSTEM [EnvInject] - Loading node environment variables. Building remotely on reynolds-ubuntu16 in workspace /home/jenkins/workspace/SANS_Commit/builddir/release_gnu5/buildnode/reynolds-ubuntu16 [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Done The recommended git tool is: NONE using credential 3614a4cf-01de-4393-97de-73734b7dd5a2 > /usr/bin/git rev-parse --resolve-git-dir /home/jenkins/workspace/SANS_Commit/builddir/release_gnu5/buildnode/reynolds-ubuntu16/.git # timeout=10 Fetching changes from the remote Git repository > /usr/bin/git config remote.acdl.url ssh://jenkins@acdl.mit.edu/home/svnroot/SANSproto # timeout=10 Pruning obsolete local branches Fetching upstream changes from ssh://jenkins@acdl.mit.edu/home/svnroot/SANSproto > /usr/bin/git --version # timeout=10 > git --version # 'git version 2.7.4' using GIT_SSH to set credentials Verifying host key using known hosts file > /usr/bin/git fetch --tags --progress --prune ssh://jenkins@acdl.mit.edu/home/svnroot/SANSproto +refs/heads/*:refs/remotes/acdl/* # timeout=10 Merging Revision 74b288860a6458918f69aaf033b17bb60428f8a1 (refs/remotes/acdl/waligura/develop) to acdl/develop, UserMergeOptions{mergeRemote='acdl', mergeTarget='develop', mergeStrategy='DEFAULT', fastForwardMode='FF'} > /usr/bin/git rev-parse acdl/develop^{commit} # timeout=10 > /usr/bin/git config core.sparsecheckout # timeout=10 > /usr/bin/git checkout -f acdl/develop # timeout=10 > /usr/bin/git remote # timeout=10 > /usr/bin/git config --get remote.acdl.url # timeout=10 using GIT_SSH to set credentials Verifying host key using known hosts file > /usr/bin/git merge --ff 74b288860a6458918f69aaf033b17bb60428f8a1 # timeout=10 > /usr/bin/git rev-parse HEAD^{commit} # timeout=10 Seen branch in repository acdl/ADRsolver Seen branch in repository acdl/AdjointRefactor/develop Seen branch in repository acdl/DeltaWing Seen branch in repository acdl/Laptop Seen branch in repository acdl/PDEBase Seen branch in repository acdl/albornoz/develop Seen branch in repository acdl/allmaras/Axes Seen branch in repository acdl/allmaras/LIP Seen branch in repository acdl/allmaras/develop Seen branch in repository acdl/allmaras/explicit2D Seen branch in repository acdl/apprentice Seen branch in repository acdl/arthuang/MDG Seen branch in repository acdl/arthuang/RANSAV Seen branch in repository acdl/arthuang/RANSgradients Seen branch in repository acdl/arthuang/develop Seen branch in repository acdl/arthuang/static Seen branch in repository acdl/asmedina/develop Seen branch in repository acdl/blsc/ChemicallyReacting Seen branch in repository acdl/blsc/ExperimentalChemicallyReacting Seen branch in repository acdl/blsc/GloballyConstrained Seen branch in repository acdl/blsc/HLCRM_test Seen branch in repository acdl/blsc/RANSforCarter Seen branch in repository acdl/blsc/Sandia Seen branch in repository acdl/blsc/VolumetricArtificialViscosity Seen branch in repository acdl/blsc/bernstein Seen branch in repository acdl/blsc/develop Seen branch in repository acdl/blsc/forJose Seen branch in repository acdl/blsc/mpi Seen branch in repository acdl/cfrontin/4D_slicing Seen branch in repository acdl/cfrontin/KSeqn Seen branch in repository acdl/cfrontin/develop Seen branch in repository acdl/cfrontin/hypersonic Seen branch in repository acdl/cfrontin/lorenz Seen branch in repository acdl/cwomack/SolverRefactor Seen branch in repository acdl/cwomack/develop Seen branch in repository acdl/darmofal/SANSboom Seen branch in repository acdl/darmofal/develop Seen branch in repository acdl/develop Seen branch in repository acdl/dgilchrist/develop Seen branch in repository acdl/dgoba/develop Seen branch in repository acdl/dmw72/develop Seen branch in repository acdl/eam5515/develop Seen branch in repository acdl/ejwllms/develop Seen branch in repository acdl/galbramc/HSM Seen branch in repository acdl/galbramc/HSM2 Seen branch in repository acdl/galbramc/MPI Seen branch in repository acdl/galbramc/develop Seen branch in repository acdl/hcarson/Laptop Seen branch in repository acdl/hcarson/develop Seen branch in repository acdl/hcarson/exact_vertex_step_MOESS Seen branch in repository acdl/hcarson/hypersonic Seen branch in repository acdl/hnilsen/develop Seen branch in repository acdl/jta29/develop Seen branch in repository acdl/jzavala/develop Seen branch in repository acdl/ksabo/develop Seen branch in repository acdl/kug46/develop Seen branch in repository acdl/kug46/electrokinetic Seen branch in repository acdl/lrochery/develop Seen branch in repository acdl/lunch/develop Seen branch in repository acdl/marlenag/develop Seen branch in repository acdl/master Seen branch in repository acdl/mbottot/develop Seen branch in repository acdl/mlarocca/develop Seen branch in repository acdl/mopg/develop Seen branch in repository acdl/pcaplan/develop Seen branch in repository acdl/remotes/origin/blsc/RANSforCarter Seen branch in repository acdl/renat999/develop Seen branch in repository acdl/sag6096/develop Seen branch in repository acdl/savithru/develop Seen branch in repository acdl/savithru/shock Seen branch in repository acdl/shunz/develop Seen branch in repository acdl/shunz/rans_bl_run Seen branch in repository acdl/shunz/rans_lowRe Seen branch in repository acdl/simpsann/develop Seen branch in repository acdl/tonyryu/develop Seen branch in repository acdl/tonyryuSolverRefactor Seen branch in repository acdl/ursachi/boeing Seen branch in repository acdl/ursachi/curvilinear Seen branch in repository acdl/ursachi/curvilinear_clean Seen branch in repository acdl/ursachi/develop Seen branch in repository acdl/ursachi/egads Seen branch in repository acdl/ursachi/hypersonic Seen branch in repository acdl/ursachi/laptop Seen branch in repository acdl/vpr11/develop Seen branch in repository acdl/waligura/BSANS Seen branch in repository acdl/waligura/develop Seen branch in repository acdl/waligura/hypersonic Seen branch in repository acdl/wct/develop Seen branch in repository acdl/wmoses/develop Seen branch in repository acdl/xbc5027/develop Seen 90 remote branches > /usr/bin/git show-ref --tags -d # timeout=10 Checking out Revision 74b288860a6458918f69aaf033b17bb60428f8a1 (acdl/waligura/develop, acdl/develop) > /usr/bin/git config core.sparsecheckout # timeout=10 > /usr/bin/git checkout -f 74b288860a6458918f69aaf033b17bb60428f8a1 # timeout=10 Commit message: "Merge remote-tracking branch 'acdl/develop' into waligura/develop" Using 'Changelog to branch' strategy. The recommended git tool is: NONE using credential 3614a4cf-01de-4393-97de-73734b7dd5a2 > /usr/bin/git rev-parse 74b288860a6458918f69aaf033b17bb60428f8a1^{commit} # timeout=10 The recommended git tool is: NONE using credential 3614a4cf-01de-4393-97de-73734b7dd5a2 [GitCheckoutListener] Recording commits of 'git ssh://jenkins@acdl.mit.edu/home/svnroot/SANSproto' [GitCheckoutListener] Found previous build 'SANS_Commit/builddir=release_gnu5,buildnode=reynolds-ubuntu16 #9808' that contains recorded Git commits [GitCheckoutListener] -> Starting recording of new commits since 'b8131b8' [GitCheckoutListener] -> Multiple parent commits found - storing latest commit of local merge '74b2888' [GitCheckoutListener] -> Using parent commit '008d9c9' of local merge as starting point [GitCheckoutListener] -> Storing target branch head 'a5970a3' (second parent of local merge) [GitCheckoutListener] -> Recorded 200 new commits [GitCheckoutListener] -> The latest commit '74b288860a6458918f69aaf033b17bb60428f8a1' is a merge commit [GitCheckoutListener] -> Git commit decorator could not be created for SCM 'hudson.plugins.git.GitSCM@4dcc7245' [reynolds-ubuntu16] $ /bin/bash -xe /tmp/jenkins10521859060981330081.sh + [[ reynolds-ubuntu16 == *\v\i\g\g\e\n* ]] + /bin/bash -ex /home/jenkins/workspace/SANS_Commit/builddir/release_gnu5/buildnode/reynolds-ubuntu16/scripts/jenkins/SANS_Commit.sh + cd /home/jenkins/workspace/SANS_Commit/builddir/release_gnu5/buildnode/reynolds-ubuntu16 + echo 'Removing any lingering untracked files' Removing any lingering untracked files ++ git ls-files --others --exclude=build --exclude=external + [[ release_gnu5 == *\c\o\v\e\r\a\g\e* ]] + source /home/jenkins/workspace/SANS_Commit/builddir/release_gnu5/buildnode/reynolds-ubuntu16/scripts/jenkins/copy_external.sh +++ hostname ++ [[ reynolds-ubuntu16 == \r\e\y\n\o\l\d\s* ]] ++ cp /home/jenkins/util/SANSexternal/tetgen1.6.0.tar.gz /home/jenkins/util/SANSexternal/triangle.zip /home/jenkins/workspace/SANS_Commit/builddir/release_gnu5/buildnode/reynolds-ubuntu16/external/ + cmakedir=/home/jenkins/workspace/SANS_Commit/builddir/release_gnu5/buildnode/reynolds-ubuntu16/build/release_gnu5 + mkdir -p /home/jenkins/workspace/SANS_Commit/builddir/release_gnu5/buildnode/reynolds-ubuntu16/build/release_gnu5 + cd /home/jenkins/workspace/SANS_Commit/builddir/release_gnu5/buildnode/reynolds-ubuntu16/build/release_gnu5 + mkdir -p /home/jenkins/workspace/SANS_Commit/builddir/release_gnu5/buildnode/reynolds-ubuntu16/build/boosttest + rm -rf '/home/jenkins/workspace/SANS_Commit/builddir/release_gnu5/buildnode/reynolds-ubuntu16/test/unit/tmp/*' + rm -rf '/home/jenkins/workspace/SANS_Commit/builddir/release_gnu5/buildnode/reynolds-ubuntu16/test/system/tmp/*' + rm -f '/home/jenkins/workspace/SANS_Commit/builddir/release_gnu5/buildnode/reynolds-ubuntu16/build/boosttest/*.xml' + rm -f /home/jenkins/workspace/SANS_Commit/builddir/release_gnu5/buildnode/reynolds-ubuntu16/build/coverage.xml + [[ release_gnu5 == *\c\o\v\e\r\a\g\e* ]] + CMAKE_ARGS=-DUSE_COTIRE=OFF ++ hostname + [[ reynolds-ubuntu16 == \r\e\y\n\o\l\d\s ]] ++ hostname + [[ reynolds-ubuntu16 != \m\a\c\y\s\.\m\i\t\.\e\d\u ]] + CMAKE_ARGS='-DUSE_COTIRE=OFF -DVERA_ERROR=ON' + CMAKE_ARGS='-DUSE_COTIRE=OFF -DVERA_ERROR=ON -DUSE_CCACHE=ON -DCCACHE_MAX_SIZE=10G -DCCACHE_CONFIGPATH=/home/jenkins/SANS_ccache/builddir/release_gnu5/buildnode/reynolds-ubuntu16' + source /home/jenkins/workspace/SANS_Commit/builddir/release_gnu5/buildnode/reynolds-ubuntu16/scripts/jenkins/jenkins_env.sh ++ shopt -s nocasematch +++ pwd ++ dir=/home/jenkins/workspace/SANS_Commit/builddir/release_gnu5/buildnode/reynolds-ubuntu16/build/release_gnu5 +++ basename /home/jenkins/workspace/SANS_Commit/builddir/release_gnu5/buildnode/reynolds-ubuntu16/build/release_gnu5 ++ builddir=release_gnu5 ++ export AFLR_VERSION=10.17.5 ++ AFLR_VERSION=10.17.5 ++ CAS_VERSION=7.7.0 +++ hostname ++ [[ reynolds-ubuntu16 == *\r\e\y\n\o\l\d\s* ]] ++ [[ release_gnu5 == *\i\n\t\e\l* ]] ++ [[ release_gnu5 == *\c\o\v\e\r\a\g\e* ]] ++ export PATH=/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin ++ PATH=/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin ++ export LD_LIBRARY_PATH=/usr/lib: ++ LD_LIBRARY_PATH=/usr/lib: ++ export LAPACK_DIR=/home/jenkins/util/lapack/lapack-3.6.1/install ++ LAPACK_DIR=/home/jenkins/util/lapack/lapack-3.6.1/install ++ export ESP_DIR=/home/jenkins/util/ESP/EngSketchPad ++ ESP_DIR=/home/jenkins/util/ESP/EngSketchPad ++ export CAS_DIR=/home/jenkins/util/ESP/OpenCASCADE-7.7.0 ++ CAS_DIR=/home/jenkins/util/ESP/OpenCASCADE-7.7.0 ++ export AFLR_DIR=/home/jenkins/util/AFLR/aflr_lib_10.17.5 ++ AFLR_DIR=/home/jenkins/util/AFLR/aflr_lib_10.17.5 +++ ls -d /home/jenkins/util/PETSc/petsc/install_dir ++ export PETSC_DIR=/home/jenkins/util/PETSc/petsc/install_dir ++ PETSC_DIR=/home/jenkins/util/PETSc/petsc/install_dir ++ export PARMETIS_DIR=/home/jenkins/util/parmetis/parmetis-4.0.3/install ++ PARMETIS_DIR=/home/jenkins/util/parmetis/parmetis-4.0.3/install ++ export METIS_DIR=/home/jenkins/util/parmetis/metis-5.1.0/install ++ METIS_DIR=/home/jenkins/util/parmetis/metis-5.1.0/install ++ export REFINE_DIR=/home/jenkins/util/refine/build_parallel/install ++ REFINE_DIR=/home/jenkins/util/refine/build_parallel/install ++ export AVRO_DIR=/home/jenkins/util/avro ++ AVRO_DIR=/home/jenkins/util/avro ++ '[' -d /home/jenkins/util/NLOPT ']' ++ '[' -d /home/jenkins/util/sandialabs/seacas ']' ++ export PATH=/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin ++ PATH=/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin ++ export PATH=/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin ++ PATH=/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin +++ ls -d /home/jenkins/util/ccache/ccache-3.7.12/install/bin ++ export PATH=/home/jenkins/util/ccache/ccache-3.7.12/install/bin:/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin ++ PATH=/home/jenkins/util/ccache/ccache-3.7.12/install/bin:/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin ++ export PATH=/home/jenkins/util/fefloa/bin:/home/jenkins/util/ccache/ccache-3.7.12/install/bin:/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin ++ PATH=/home/jenkins/util/fefloa/bin:/home/jenkins/util/ccache/ccache-3.7.12/install/bin:/home/jenkins/util/cppcheck/cppcheck-1.79/:/home/jenkins/util/vera/vera/install/bin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin ++ [[ release_gnu5 == *\i\n\t\e\l* ]] +++ hostname ++ [[ reynolds-ubuntu16 == *\c\e\n\t\O\S\7* ]] +++ hostname ++ [[ reynolds-ubuntu16 == *\r\h\e\l* ]] ++ export Boost_NO_SYSTEM_PATHS=OFF ++ Boost_NO_SYSTEM_PATHS=OFF ++ export ASAN_OPTIONS=detect_odr_violation=0 ++ ASAN_OPTIONS=detect_odr_violation=0 ++ env + source /home/jenkins/workspace/SANS_Commit/builddir/release_gnu5/buildnode/reynolds-ubuntu16/scripts/jenkins/cmake_jenkins.sh -DXML_BOOST_CHECK=ON -DUSE_LAPACK=ON -DUSE_COTIRE=OFF -DVERA_ERROR=ON -DUSE_CCACHE=ON -DCCACHE_MAX_SIZE=10G -DCCACHE_CONFIGPATH=/home/jenkins/SANS_ccache/builddir/release_gnu5/buildnode/reynolds-ubuntu16 +++ git rev-parse --show-toplevel ++ WORKSPACE=/home/jenkins/workspace/SANS_Commit/builddir/release_gnu5/buildnode/reynolds-ubuntu16 +++ uname -a ++ [[ Linux reynolds-ubuntu16 4.4.0-210-generic #242-Ubuntu SMP Fri Apr 16 09:57:56 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux == \D\a\r\w\i\n* ]] +++ hostname ++ [[ reynolds-ubuntu16 == \r\e\y\n\o\l\d\s ]] +++ hostname ++ [[ reynolds-ubuntu16 == \m\a\c\y\s* ]] +++ hostname ++ [[ reynolds-ubuntu16 == \v\i\g\g\e\n* ]] ++ cmake -DBoost_NO_SYSTEM_PATHS=OFF -DXDIR_DEFAULT=ON -DUI_CAPSAIM=ON -DUI_OPENCSM_UDF=ON -DXML_BOOST_CHECK=ON -DUSE_LAPACK=ON -DUSE_COTIRE=OFF -DVERA_ERROR=ON -DUSE_CCACHE=ON -DCCACHE_MAX_SIZE=10G -DCCACHE_CONFIGPATH=/home/jenkins/SANS_ccache/builddir/release_gnu5/buildnode/reynolds-ubuntu16 /home/jenkins/workspace/SANS_Commit/builddir/release_gnu5/buildnode/reynolds-ubuntu16 _____ ___ _ _______ / ___// | / | / / ___/ \__ \/ /| | / |/ /\__ \ ___/ / ___ |/ /| /___/ / /____/_/ |_/_/ |_//____/ Solution Adaptive Numerical Simulator -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) -- Boost version: 1.58.0 -- Found the following Boost libraries: -- unit_test_framework -- iostreams -- filesystem -- system -- mpi -- serialization -- regex -- Boost version: 1.58.0 -- Found the following Boost libraries: -- unit_test_framework -- iostreams -- filesystem -- system -- mpi -- serialization -- python -- regex -- A library with BLAS API found. -- Found Generic BLAS -- Found cblas.h in /usr/include -- Could NOT find AVRO (missing: AVRO_LIBRARY) -- Could NOT find SEACAS (missing: SEACAS_LIBRARIES SEACAS_INCLUDE_DIRS) -- Could NOT find AFLR (missing: AFLR_AFLR3_LIBRARY AFLR_ANBL3_LIBRARY AFLR_AFLR4_LIBRARY AFLR_AFLR2C_LIBRARY AFLR_BL1_LIBRARY AFLR_DGEOM_LIBRARY AFLR_REC3_LIBRARY AFLR_REC2_LIBRARY AFLR_DFTR3_LIBRARY AFLR_DFTR2_LIBRARY AFLR_ICE3_LIBRARY AFLR_ICE2_LIBRARY AFLR_OTB_LIBRARY AFLR_UG3_LIBRARY AFLR_UG2_LIBRARY AFLR_UG_LIBRARY AFLR_SURF_AUTO_LIBRARY AFLR_SURF_AUTO_CPP_LIBRARY AFLR_EGEN_LIBRARY AFLR_OTB_LIBRARY AFLR_QTB_LIBRARY AFLR_UG_MP_LIBRARY AFLR_UVMAP_LIBRARY AFLR_AFLR3_INCLUDE_DIR) -- Please install kcachegrind for graphical profiling. -- Please install massif-visualizer for graphical heap memory usage. -- Cache Line Size CACHE_LINE_SIZE=64 ================================= !!!! WARNING !!!! The following unit tests are not compiled: LinearizedIncompressiblePotential3D_Trefftz_btest LinearizedIncompressiblePotential3D_Circulation_btest XField2D_SymAirfoil_X1_btest XField2D_WakeSymAirfoil_X1_btest --------------------------------- The list can be modified in CMakeLists.txt in the SANS root directory ================================= ================================= !!!! WARNING !!!! The following toys are not compiled: Solve2D_CG_NACA_IPTF_linearsolve_toy Solve2D_CG_NACA_IPTF_toy Solve2D_CG_NACA_LIP_toy Solve2D_CG_NACABTE_IPTF_toy --------------------------------- The list can be modified in CMakeLists.txt in the SANS root directory ================================= ############################################# # # SANS configuration: # # CMAKE_BUILD_TYPE: Release # CMAKE_INSTALL_PREFIX: /usr/local # CMAKE_CXX_COMPILER name: GNU 5.5.0 on platform Linux x86_64 # CMAKE_CXX_COMPILER path: /usr/bin/g++-5 # # CMAKE_CXX_IMPLICIT_INCLUDE_DIRECTORIES: # /usr/include # # CMAKE_CXX_IMPLICIT_LINK_DIRECTORIES: # /usr/lib/gcc/x86_64-linux-gnu/5 # /usr/lib/x86_64-linux-gnu /usr/lib /lib/x86_64-linux-gnu /lib # # Compiler flags used for this build: # # CMAKE_CXX_FLAGS: -Wall -Wextra -Wno-unused-parameter # -Wunused-result -Winit-self -Wno-variadic-macros # -Wno-strict-overflow -Wno-maybe-uninitialized -std=c++11 # -fstrict-aliasing -Wstrict-aliasing -pedantic -Wnon-virtual-dtor # -fPIC -pthread # # CMAKE_CXX_FLAGS_RELEASE: -O3 -funroll-loops # # Required dependencies: # # EGADS -----------> Met with existing library: # Include Directories: # /home/jenkins/util/ESP/EngSketchPad/include # Libraries: # /home/jenkins/util/ESP/EngSketchPad/lib/libegads.so # # Boost -----------> Met with existing library: # Include Directories: # /usr/include # Libraries: # /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so # /usr/lib/x86_64-linux-gnu/libboost_iostreams.so # /usr/lib/x86_64-linux-gnu/libboost_filesystem.so # /usr/lib/x86_64-linux-gnu/libboost_system.so # /usr/lib/x86_64-linux-gnu/libboost_mpi.so # /usr/lib/x86_64-linux-gnu/libboost_serialization.so # /usr/lib/x86_64-linux-gnu/libboost_python.so # /usr/lib/x86_64-linux-gnu/libboost_regex.so # # PYTHON ----------> Met with existing library: # Include Directories: # /usr/include/python2.7 # Libraries: # /usr/lib/x86_64-linux-gnu/libpython2.7.so # # NLOPT -----------> Met with existing library: # Include Directories: # /usr/include # Libraries: # /usr/lib/x86_64-linux-gnu/libnlopt.so # # SUITESPARSE -----> Met with existing library: # Include Directories: # /usr/include/suitesparse # Libraries: # /usr/lib/x86_64-linux-gnu/libumfpack.so # /usr/lib/x86_64-linux-gnu/libamd.so # /usr/lib/x86_64-linux-gnu/libcholmod.so # /usr/lib/x86_64-linux-gnu/libcamd.so # /usr/lib/x86_64-linux-gnu/libcolamd.so # /usr/lib/x86_64-linux-gnu/libccolamd.so # /usr/lib/x86_64-linux-gnu/libsuitesparseconfig.so # # BLAS ------------> Met with existing library: # Include Directories: # /usr/include # Libraries: # /usr/lib/libblas.so # # METIS -----------> Met with existing library: # Include Directories: # /usr/include # Libraries: # /usr/lib/x86_64-linux-gnu/libmetis.so # # PARMETIS --------> Met with existing library: # Include Directories: # /usr/include # Libraries: # /usr/lib/libparmetis.so # # Optional dependencies: # # AFLR ------------> OFF -- Could not find library. # # AVRO ------------> OFF -- Could not find library. # # CAPS ------------> ON. -- Met with existing library: # Include Directories: # /home/jenkins/util/ESP/EngSketchPad/include # Libraries: # /home/jenkins/util/ESP/EngSketchPad/lib/libaimUtil.a # /home/jenkins/util/ESP/EngSketchPad/lib/libocsm.so # /home/jenkins/util/ESP/EngSketchPad/lib/libudunits2.so # # LAPACK ----------> ON. -- Met with existing library: # Libraries: # /usr/lib/liblapack.so # # LAPACKE ---------> OFF. # # MKL -------------> OFF. # # PETSC -----------> ON. -- Met with existing library: # Include Directories: # /home/jenkins/util/PETSc/petsc/install_dir/include # Libraries: # /home/jenkins/util/PETSc/petsc/install_dir/lib/libpetsc.so # # REFINE ----------> OFF. # # SEACAS ----------> OFF -- Could not find library. # # TECIO -----------> OFF. # # TETGEN ----------> OFF. # # TRIANGLE --------> OFF. # # MPI -------------> ON. -- Met with existing library: # Include Directories: # /usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent # /usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include # /usr/lib/openmpi/include # /usr/lib/openmpi/include/openmpi # Libraries: # /usr/lib/openmpi/lib/libmpi_cxx.so # /usr/lib/openmpi/lib/libmpi.so # mpiexec: # /usr/bin/mpiexec # ############################################# -- Configuring done -- Generating done -- Build files have been written to: /home/jenkins/workspace/SANS_Commit/builddir/release_gnu5/buildnode/reynolds-ubuntu16/build/release_gnu5 real 0m31.899s user 0m21.268s sys 0m8.896s + cp /home/jenkins/workspace/SANS_Commit/builddir/release_gnu5/buildnode/reynolds-ubuntu16/scripts/jenkins/Makefile.parallel . + nproc=2 + [[ release_gnu5 == *\i\n\t\e\l* ]] + [[ release_gnu5 == *\c\o\v\e\r\a\g\e* ]] + make -f Makefile.parallel depends make libmeshb > libmeshb.out make libmeshb Built target libmeshb real 0m17.488s user 0m17.324s sys 0m0.132s real 0m20.937s user 0m20.844s sys 0m0.460s + make -j 2 -f Makefile.parallel headercheck make gmshLib_headercheck > 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[ 0%] Building CXX object src/Field/CMakeFiles/FieldLib_headercheck.dir/FieldAssociativityConstructor.h.cxx.o [ 0%] Building CXX object src/Field/CMakeFiles/FieldLib_headercheck.dir/FieldAssociativity.h.cxx.o [ 0%] Building CXX object src/Field/CMakeFiles/FieldLib_headercheck.dir/output_Profile.h.cxx.o In file included from /home/jenkins/workspace/SANS_Commit/builddir/release_gnu5/buildnode/reynolds-ubuntu16/build/release_gnu5/src/Field/output_Profile.h.cxx:2:0: /home/jenkins/workspace/SANS_Commit/builddir/release_gnu5/buildnode/reynolds-ubuntu16/src/Field/output_Profile.h: In function ‘int SANS::findTraceElement(typename SANS::XField<PhysDim, TopoDim>::FieldTraceGroupType<TopologyTrace>, SANS::DLA::VectorS<TopoDim:: D, double>, SANS::DLA::VectorS<(TopoDim:: D - 1), double>&)’: /home/jenkins/workspace/SANS_Commit/builddir/release_gnu5/buildnode/reynolds-ubuntu16/src/Field/output_Profile.h:61:90: warning: typedef ‘XFieldTraceGroupType’ locally defined but not used 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object src/Field/CMakeFiles/FieldLib_headercheck.dir/tools/GroupElemIndex.h.cxx.o [ 33%] Building CXX object src/Field/CMakeFiles/FieldLib_headercheck.dir/tools/for_each_HubTraceGroup.h.cxx.o [ 33%] Building CXX object src/Field/CMakeFiles/FieldLib_headercheck.dir/tools/for_each_GhostBoundaryTraceGroup_Cell.h.cxx.o [ 33%] Building CXX object src/Field/CMakeFiles/FieldLib_headercheck.dir/tools/findGroups.h.cxx.o [ 33%] Building CXX object src/Field/CMakeFiles/FieldLib_headercheck.dir/tools/for_each_PeriodicFieldTraceGroup_Cell.h.cxx.o [ 33%] Building CXX object src/Field/CMakeFiles/FieldLib_headercheck.dir/tools/for_each_InteriorFieldTraceGroup_Cell.h.cxx.o [ 33%] Building CXX object src/Field/CMakeFiles/FieldLib_headercheck.dir/tools/for_each_GhostBoundaryTraceGroup.h.cxx.o [ 33%] Building CXX object src/Field/CMakeFiles/FieldLib_headercheck.dir/tools/for_each_PeriodicTraceGroup_Cell.h.cxx.o [ 33%] Building CXX object src/Field/CMakeFiles/FieldLib_headercheck.dir/tools/for_each_BoundaryTraceGroup.h.cxx.o [ 33%] Building CXX object src/Field/CMakeFiles/FieldLib_headercheck.dir/tools/for_each_InteriorFieldTraceGroup.h.cxx.o [ 33%] Building CXX object src/Field/CMakeFiles/FieldLib_headercheck.dir/tools/for_each_CellGroup.h.cxx.o [ 33%] Building CXX object src/Field/CMakeFiles/FieldLib_headercheck.dir/tools/Surrealize.h.cxx.o [ 33%] Building CXX object src/Field/CMakeFiles/FieldLib_headercheck.dir/tools/for_each_InteriorTraceGroup_Cell.h.cxx.o [ 33%] Building CXX object src/Field/CMakeFiles/FieldLib_headercheck.dir/tools/for_each_BoundaryTraceGroup_Cell.h.cxx.o [ 33%] Building CXX object src/Field/CMakeFiles/FieldLib_headercheck.dir/CellToTraceAssociativity.h.cxx.o [ 33%] Building CXX object src/Field/CMakeFiles/FieldLib_headercheck.dir/OutputProfile2D.h.cxx.o In file included from /home/jenkins/workspace/SANS_Commit/builddir/release_gnu5/buildnode/reynolds-ubuntu16/src/Field/OutputProfile2D.h:31:0, from /home/jenkins/workspace/SANS_Commit/builddir/release_gnu5/buildnode/reynolds-ubuntu16/build/release_gnu5/src/Field/OutputProfile2D.h.cxx:2: /home/jenkins/workspace/SANS_Commit/builddir/release_gnu5/buildnode/reynolds-ubuntu16/src/Field/output_Profile.h: In function ‘int SANS::findTraceElement(typename SANS::XField<PhysDim, TopoDim>::FieldTraceGroupType<TopologyTrace>, SANS::DLA::VectorS<TopoDim:: D, double>, SANS::DLA::VectorS<(TopoDim:: D - 1), double>&)’: /home/jenkins/workspace/SANS_Commit/builddir/release_gnu5/buildnode/reynolds-ubuntu16/src/Field/output_Profile.h:61:90: warning: typedef ‘XFieldTraceGroupType’ locally defined but not used [-Wunused-local-typedefs] typedef typename XField<PhysDim, TopoDim>::template FieldTraceGroupType<TopologyTrace> XFieldTraceGroupType; ^ In file included from /home/jenkins/workspace/SANS_Commit/builddir/release_gnu5/buildnode/reynolds-ubuntu16/build/release_gnu5/src/Field/OutputProfile2D.h.cxx:2:0: /home/jenkins/workspace/SANS_Commit/builddir/release_gnu5/buildnode/reynolds-ubuntu16/src/Field/OutputProfile2D.h: In function ‘void SANS::output_Profile_TraceCellGroup(const SANS::IntegrandBoundaryTrace<PDE, SANS::NDVectorCategory<NDBCVector, SANS::BCCategory::Flux_mitState>, SANS::VMSDBR2>&, const BC&, boost::mpi::communicator&, const std::vector<int>&, bool, const typename ParamFieldType::XFieldType::FieldTraceGroupType<TopologyTrace>&, const typename ParamFieldType::FieldCellGroupType<TopologyCell>&, const typename SANS::Field<PhysDim, TopoDim, ArrayQ>::FieldCellGroupType<TopologyCell>&, const typename SANS::Field<PhysDim, TopoDim, ArrayQ>::FieldCellGroupType<TopologyCell>&, const typename SANS::FieldLift<PhysDim, TopoDim, VectorArrayQ>::FieldCellGroupType<TopologyCell>&, SANS::DLA::VectorS<TopoDim:: D, double>, Real, Real, FILE*)’: /home/jenkins/workspace/SANS_Commit/builddir/release_gnu5/buildnode/reynolds-ubuntu16/src/Field/OutputProfile2D.h:197:90: warning: typedef ‘XFieldCellClass’ locally defined but not used [-Wunused-local-typedefs] typedef typename XField<PhysDim, TopoDim>::template FieldCellGroupType<TopologyCell> XFieldCellClass; ^ [ 33%] Building CXX object src/Field/CMakeFiles/FieldLib_headercheck.dir/FieldLiftGroupVolume_Traits.h.cxx.o [ 33%] Building CXX object src/Field/CMakeFiles/FieldLib_headercheck.dir/Function/FunctionIntegral.h.cxx.o [ 33%] Building CXX object src/Field/CMakeFiles/FieldLib_headercheck.dir/Function/WeightedFunctionIntegral.h.cxx.o [ 33%] Building CXX object src/Field/CMakeFiles/FieldLib_headercheck.dir/ElementConnectivityConstructor.h.cxx.o [ 33%] Building CXX object src/Field/CMakeFiles/FieldLib_headercheck.dir/ElementConnectivity.h.cxx.o [ 33%] Building CXX object src/Field/CMakeFiles/FieldLib_headercheck.dir/FieldSequence.h.cxx.o [ 33%] Building CXX object src/Field/CMakeFiles/FieldLib_headercheck.dir/DistanceFunction/DistanceSolver.h.cxx.o [ 33%] Building CXX object 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Building CXX object src/pde/IBL/CMakeFiles/IBL_Lib_headercheck.dir/ProjectToQauxi3D.h.cxx.o Building CXX object src/pde/IBL/CMakeFiles/IBL_Lib_headercheck.dir/SetIBLtransitionFrontCellGroup.h.cxx.o Building CXX object src/pde/IBL/CMakeFiles/IBL_Lib_headercheck.dir/AlgebraicEquationSet_ProjectToQauxv_PiecewiseConstSourcePanel_FlatPlate3D.h.cxx.o Building CXX object src/pde/IBL/CMakeFiles/IBL_Lib_headercheck.dir/ElementProjectionIBLoutput_L2.h.cxx.o Building CXX object src/pde/IBL/CMakeFiles/IBL_Lib_headercheck.dir/SetIBLoutputCellGroup.h.cxx.o Building CXX object src/pde/IBL/CMakeFiles/IBL_Lib_headercheck.dir/ProjectToQauxi2D.h.cxx.o Building CXX object src/pde/IBL/CMakeFiles/IBL_Lib_headercheck.dir/ElementProjectionOutputIBL3D.h.cxx.o Linking CXX static library libIBL_Lib_headercheck.a Built target IBL_Lib_headercheck real 0m27.994s user 0m25.628s sys 0m2.084s make refineLib_headercheck Built target refineLib_headercheck real 0m17.478s user 0m17.340s sys 0m0.100s make DuctSolverLib_headercheck Scanning dependencies of target DuctSolverLib_headercheck Building CXX object src/UserInterfaces/CMakeFiles/DuctSolverLib_headercheck.dir/DuctSolver.h.cxx.o Linking CXX static library libDuctSolverLib_headercheck.a Built target DuctSolverLib_headercheck real 0m18.029s user 0m17.756s sys 0m0.212s make EPICLib_headercheck Built target EPICLib_headercheck real 0m18.143s user 0m17.932s sys 0m0.128s make IncompressibleNSLib_headercheck Built target IncompressibleNSLib_headercheck real 0m17.896s user 0m17.704s sys 0m0.112s make FeFloaLib_headercheck Built target FeFloaLib_headercheck real 0m18.078s user 0m17.916s sys 0m0.112s make TimeMarchingLib_headercheck Scanning dependencies of target TimeMarchingLib_headercheck Building CXX object src/SolutionTrek/TimeMarching/CMakeFiles/TimeMarchingLib_headercheck.dir/RungeKutta/RungeKutta.h.cxx.o Building CXX object src/SolutionTrek/TimeMarching/CMakeFiles/TimeMarchingLib_headercheck.dir/AlgebraicEquationSet_TimeStep.h.cxx.o Linking CXX static library libTimeMarchingLib_headercheck.a Built target TimeMarchingLib_headercheck real 0m23.360s user 0m22.156s sys 0m1.076s make VTKLib_headercheck Built target VTKLib_headercheck real 0m18.246s user 0m18.024s sys 0m0.112s real 13m7.370s user 24m39.608s sys 1m16.028s + make -j 2 -f Makefile.parallel sanslibs make ugridLib > ugridLib.out make LorenzLib > LorenzLib.out make EGTessLib > EGTessLib.out make DGBR2EulerAVLib > DGBR2EulerAVLib.out make MetricLib > MetricLib.out make PanelMethodLib > PanelMethodLib.out make EmbeddingLib > EmbeddingLib.out make DGBR2ADLib > DGBR2ADLib.out make sansBOOM2DLib > sansBOOM2DLib.out make refineLib > refineLib.out make BlockLib > BlockLib.out make DGBR2LorenzLib > DGBR2LorenzLib.out make FullPotentialLib > FullPotentialLib.out make PointwiseLib > PointwiseLib.out make MPILib > MPILib.out make RotorSource2DLib > RotorSource2DLib.out make DGBR2Lib > DGBR2Lib.out make NSLib > NSLib.out make DistanceLib > DistanceLib.out make SparseLinAlgLib > SparseLinAlgLib.out make AnalyticMetricLib > AnalyticMetricLib.out make capsLib > capsLib.out make sansBOOMLib > sansBOOMLib.out make AdvectionDiffusionLib > AdvectionDiffusionLib.out make DenseLinAlgLib > DenseLinAlgLib.out make NDConvertLib > NDConvertLib.out make BlockLinAlgLib > BlockLinAlgLib.out make libMeshbLib > libMeshbLib.out make UnitGridsLib > UnitGridsLib.out make PythonLib > PythonLib.out make DGBR2RANSSALib > DGBR2RANSSALib.out make BodyForceSolverLib > BodyForceSolverLib.out make StokesLib > StokesLib.out make XFieldLib > XFieldLib.out make TCNELib > TCNELib.out make DGBR2PorousMediaLib > DGBR2PorousMediaLib.out make IncompressibleNSLib > IncompressibleNSLib.out make HSMLib > HSMLib.out make FluentLib > FluentLib.out make FieldCGLib > FieldCGLib.out make IBL_Lib > IBL_Lib.out make XField1DLib > XField1DLib.out make TopologyLib > TopologyLib.out make NonLinearSolverLib > NonLinearSolverLib.out make FieldDGLib > FieldDGLib.out make QuadratureLib > QuadratureLib.out make pdeSensorLib > pdeSensorLib.out make ErrorEstimateLib > ErrorEstimateLib.out make AxisymmetricNSLib > AxisymmetricNSLib.out make ContinuationLib > ContinuationLib.out make ShallowWaterLib > ShallowWaterLib.out make AnalyticFunctionLib > AnalyticFunctionLib.out make FieldEGLib > FieldEGLib.out make LinearAlgebraLib > LinearAlgebraLib.out make XField3D_BF_CylDuctLib > XField3D_BF_CylDuctLib.out make DuctSolverLib > DuctSolverLib.out make DGBR2sansBOOM2DLib > DGBR2sansBOOM2DLib.out make EPICLib > EPICLib.out make FeFloaLib > FeFloaLib.out make FieldLib > FieldLib.out make FieldLib [ 25%] Built target FieldLib_headercheck [ 25%] Checking style of src/Field/output_Profile.h /home/jenkins/workspace/SANS_Commit/builddir/release_gnu5/buildnode/reynolds-ubuntu16/src/Field/output_Profile.h:2: error T023: copyright notice is incorrect, expected: // Copyright 2013-2024, Massachusetts Institute of Technology CMake Error at VeraScript.output_Profile.h.vera.cmake:20 (MESSAGE): Please fix the formatting src/Field/CMakeFiles/FieldLib_vera.dir/build.make:717: recipe for target 'src/Field/output_Profile.h.vera' failed make[4]: *** [src/Field/output_Profile.h.vera] Error 1 CMakeFiles/Makefile2:3633: recipe for target 'src/Field/CMakeFiles/FieldLib_vera.dir/all' failed make[3]: *** [src/Field/CMakeFiles/FieldLib_vera.dir/all] Error 2 CMakeFiles/Makefile2:3678: recipe for target 'src/Field/CMakeFiles/FieldLib.dir/rule' failed make[2]: *** [src/Field/CMakeFiles/FieldLib.dir/rule] Error 2 Makefile:953: recipe for target 'FieldLib' failed make[1]: *** [FieldLib] Error 2 real 0m17.658s user 0m17.332s sys 0m0.272s Makefile.parallel:20: recipe for target 'FieldLib' failed make: *** [FieldLib] Error 1 make: *** Waiting for unfinished jobs.... Build step 'Execute shell' marked build as failure [GNU C Compiler (gcc)ClangIntel Compiler (C, Fortran)Vera++] Skipping execution of recorder since overall result is 'FAILURE' INFO: Processing BoostTest-1.x (default) INFO: [BoostTest-1.x (default)] - No test report file(s) were found with the pattern 'build/boosttest/*.xml' relative to '/home/jenkins/workspace/SANS_Commit/builddir/release_gnu5/buildnode/reynolds-ubuntu16' for the testing framework 'BoostTest-1.x (default)'. Did you enter a pattern relative to (and within) the workspace directory? Did you generate the result report(s) for 'BoostTest-1.x (default)'?" WARNING: All test reports are empty. INFO: Check 'Failed Tests' threshold. INFO: Check 'Skipped Tests' threshold. [Checks API] No suitable checks publisher found. INFO: Setting the build status to SUCCESS [Coverage] Skipping execution of coverage recorder since overall result is 'FAILURE' Finished: FAILURE