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Started by upstream project "TransportMaps-private-master" build number 95 originally caused by: Started by BitBucket push by dabi86 Started by BitBucket push by dabi86 Building remotely on macys in workspace /Users/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/macys/PYTHON_EXE/python2/VENV_SYS/virtualenv [WS-CLEANUP] Deleting project workspace... Cloning the remote Git repository Cloning repository git@bitbucket.org:dabi86/transportmaps-private.git > git init /Users/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/macys/PYTHON_EXE/python2/VENV_SYS/virtualenv # timeout=10 Fetching upstream changes from git@bitbucket.org:dabi86/transportmaps-private.git > git --version # timeout=10 > git fetch --tags --progress git@bitbucket.org:dabi86/transportmaps-private.git +refs/heads/*:refs/remotes/origin/* > git config remote.origin.url git@bitbucket.org:dabi86/transportmaps-private.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url git@bitbucket.org:dabi86/transportmaps-private.git # timeout=10 Fetching upstream changes from git@bitbucket.org:dabi86/transportmaps-private.git > git fetch --tags --progress git@bitbucket.org:dabi86/transportmaps-private.git +refs/heads/*:refs/remotes/origin/* Checking out Revision 124402980e1baecb9a68a52f33dd80c55b94f2c3 (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 124402980e1baecb9a68a52f33dd80c55b94f2c3 Commit message: "Merge branch 'hotfixes/master'" > git rev-list 1ec0fa367ed0096a04269b321589b28d0cdf2903 # timeout=10 [virtualenv] $ /bin/bash -xe /var/folders/wp/20zl4b2n0qxcrp90f31275f80000gp/T/jenkins7785191881695562207.sh + bash -ex jenkins/test-source.sh + set -e ++ pwd + ROOT=/Users/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/macys/PYTHON_EXE/python2/VENV_SYS/virtualenv ++ echo TransportMaps-private-master/COMPILER=clang,MACHINE=macys,PYTHON_EXE=python2,VENV_SYS=virtualenv ++ cut -d / -f 1 + TEST_NAME=TransportMaps-private-master + ENV_NAME=venv_TransportMaps-private-master_python2 + VENV_OPTS= + [[ TransportMaps-private-master == *\m\p\i* ]] + TTYPE=serial + MPI=False ++ hostname + [[ macys.mit.edu == *\m\a\c\y\s* ]] + export PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin + PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin + [[ python2 == \p\y\t\h\o\n\2 ]] + PYTHON_EXE=python ++ hostname + [[ macys.mit.edu == \m\a\c\y\s\-\S\i\e\r\r\a ]] ++ hostname + [[ macys.mit.edu == *\r\e\y\n\o\l\d\s* ]] + '[' virtualenv = virtualenv ']' + rm -rf venv_TransportMaps-private-master_python2 + virtualenv --python=python venv_TransportMaps-private-master_python2 Already using interpreter /usr/bin/python New python executable in /Users/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/macys/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/bin/python Installing setuptools, pip, wheel...done. + source venv_TransportMaps-private-master_python2/bin/activate ++ deactivate nondestructive ++ unset -f pydoc ++ '[' -z '' ']' ++ '[' -z '' ']' ++ '[' -n /bin/bash ']' ++ hash -r ++ '[' -z '' ']' ++ unset VIRTUAL_ENV ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/Users/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/macys/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2 ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin ++ PATH=/Users/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/macys/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin ++ export PATH ++ '[' -z '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ '[' x '!=' x ']' +++ basename /Users/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/macys/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2 ++ PS1='(venv_TransportMaps-private-master_python2) ' ++ export PS1 ++ alias pydoc ++ '[' -n /bin/bash ']' ++ hash -r ++ python -V Python 2.7.5 + PY_VERS= + CMD='import logging;' + CMD+='import TransportMaps as TM;' + CMD+='import warnings;' + CMD+='warnings.simplefilter('\''ignore'\'');' + CMD+='TM.tests.run_all(log_level=logging.ERROR,ttype='\''serial'\'')' + echo '' + echo 'TEST_NAME: TransportMaps-private-master' TEST_NAME: TransportMaps-private-master ++ hostname + echo 'HOSTNAME: macys.mit.edu' HOSTNAME: macys.mit.edu + echo 'PATH: /Users/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/macys/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin' PATH: /Users/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/macys/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin + echo 'VENV_OPTS: ' VENV_OPTS: + echo 'PY-VERS: ' PY-VERS: + echo 'PY-CMD: import logging;import TransportMaps as TM;import warnings;warnings.simplefilter('\''ignore'\'');TM.tests.run_all(log_level=logging.ERROR,ttype='\''serial'\'')' PY-CMD: import logging;import TransportMaps as TM;import warnings;warnings.simplefilter('ignore');TM.tests.run_all(log_level=logging.ERROR,ttype='serial') + echo '' + echo 'Upgrading pip' Upgrading pip + python /Users/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/macys/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/bin/pip install --upgrade pip Requirement already up-to-date: pip in ./venv_TransportMaps-private-master_python2/lib/python2.7/site-packages + echo 'Installing numpy' Installing numpy + python /Users/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/macys/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/bin/pip install --upgrade numpy Collecting numpy /Users/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/macys/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/lib/python2.7/site-packages/pip/_vendor/requests/packages/urllib3/util/ssl_.py:318: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/security.html#snimissingwarning. SNIMissingWarning /Users/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/macys/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/lib/python2.7/site-packages/pip/_vendor/requests/packages/urllib3/util/ssl_.py:122: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/security.html#insecureplatformwarning. InsecurePlatformWarning Using cached numpy-1.13.3-cp27-cp27m-macosx_10_6_intel.macosx_10_9_intel.macosx_10_9_x86_64.macosx_10_10_intel.macosx_10_10_x86_64.whl Installing collected packages: numpy Successfully installed numpy-1.13.3 + echo Packaging Packaging + rm -fr tmp_sdist + mkdir tmp_sdist + python setup.py clean --all running clean 'build/lib' does not exist -- can't clean it 'build/bdist.macosx-10.9-intel' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it + python setup.py sdist --dist-dir=tmp_sdist running sdist running egg_info creating TransportMaps.egg-info writing requirements to TransportMaps.egg-info/requires.txt writing TransportMaps.egg-info/PKG-INFO writing top-level names to TransportMaps.egg-info/top_level.txt writing dependency_links to TransportMaps.egg-info/dependency_links.txt writing manifest file 'TransportMaps.egg-info/SOURCES.txt' reading manifest file 'TransportMaps.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'Examples/stable/?/data' warning: no previously-included files found matching '.git' warning: no previously-included files found matching '*.dill' warning: no previously-included files found matching '*.hdf5' warning: no previously-included files found matching '*.pkl' warning: no previously-included files found matching '*.pkl.old' warning: no previously-included files found matching '*~' writing manifest file 'TransportMaps.egg-info/SOURCES.txt' running check creating TransportMaps-1.0b2 creating TransportMaps-1.0b2/Docs creating TransportMaps-1.0b2/Docs/conf3 creating TransportMaps-1.0b2/Docs/make3 creating TransportMaps-1.0b2/Docs/source creating TransportMaps-1.0b2/Docs/source/Figures creating TransportMaps-1.0b2/Docs/source/Figures/BOD creating TransportMaps-1.0b2/Docs/source/Figures/working creating TransportMaps-1.0b2/Docs/source/Figures/working/inv-sparsity creating TransportMaps-1.0b2/Docs/source/aux creating TransportMaps-1.0b2/Docs/source/aux/inv-stocvol creating TransportMaps-1.0b2/Docs/source/aux/xml creating TransportMaps-1.0b2/Docs/source/cli creating TransportMaps-1.0b2/Examples creating TransportMaps-1.0b2/Examples/stable creating TransportMaps-1.0b2/Examples/stable/BODmodel creating TransportMaps-1.0b2/Examples/stable/CPP-Module creating TransportMaps-1.0b2/Examples/stable/CPP-Module/xun creating TransportMaps-1.0b2/Examples/stable/CPP-Module/xun/tests creating TransportMaps-1.0b2/Examples/stable/StochasticVolatility creating TransportMaps-1.0b2/Examples/stable/TestDistributions creating TransportMaps-1.0b2/Examples/stable/cluster creating TransportMaps-1.0b2/Examples/stable/cluster/voyager creating TransportMaps-1.0b2/TransportMaps creating TransportMaps-1.0b2/TransportMaps.egg-info creating TransportMaps-1.0b2/TransportMaps/Algorithms creating TransportMaps-1.0b2/TransportMaps/Algorithms/Adaptivity creating TransportMaps-1.0b2/TransportMaps/Algorithms/SequentialInference creating TransportMaps-1.0b2/TransportMaps/CLI creating TransportMaps-1.0b2/TransportMaps/Densities creating TransportMaps-1.0b2/TransportMaps/Densities/Decomposable creating TransportMaps-1.0b2/TransportMaps/Densities/Inference creating TransportMaps-1.0b2/TransportMaps/Diagnostics creating TransportMaps-1.0b2/TransportMaps/Distributions creating TransportMaps-1.0b2/TransportMaps/Distributions/Decomposable creating TransportMaps-1.0b2/TransportMaps/Distributions/Examples creating TransportMaps-1.0b2/TransportMaps/Distributions/Examples/BiochemicalOxigenDemand creating TransportMaps-1.0b2/TransportMaps/Distributions/Examples/InertialNavigationSystem creating TransportMaps-1.0b2/TransportMaps/Distributions/Examples/LogGaussianCoxProcess creating TransportMaps-1.0b2/TransportMaps/Distributions/Examples/RailwayVehicleDynamics creating TransportMaps-1.0b2/TransportMaps/Distributions/Examples/RailwayVehicleDynamics/Coradia175 creating TransportMaps-1.0b2/TransportMaps/Distributions/Examples/ScalarLinearGaussMarkovProcess creating TransportMaps-1.0b2/TransportMaps/Distributions/Examples/StochasticVolatility creating TransportMaps-1.0b2/TransportMaps/Distributions/Inference creating TransportMaps-1.0b2/TransportMaps/Functionals creating TransportMaps-1.0b2/TransportMaps/Likelihoods creating TransportMaps-1.0b2/TransportMaps/Maps creating TransportMaps-1.0b2/TransportMaps/Maps/Decomposable creating TransportMaps-1.0b2/TransportMaps/Optimization creating TransportMaps-1.0b2/TransportMaps/Samplers creating TransportMaps-1.0b2/TransportMaps/XML creating TransportMaps-1.0b2/TransportMaps/XML/schema creating TransportMaps-1.0b2/TransportMaps/tests creating TransportMaps-1.0b2/TransportMaps/tests/xml creating TransportMaps-1.0b2/TransportMaps/tests/xml/maps creating TransportMaps-1.0b2/scripts copying files to TransportMaps-1.0b2... copying COPYING -> TransportMaps-1.0b2 copying COPYING.LESSER -> TransportMaps-1.0b2 copying MANIFEST.in -> TransportMaps-1.0b2 copying README.rst -> TransportMaps-1.0b2 copying requirements-H5PY.txt -> TransportMaps-1.0b2 copying requirements-MPI.txt -> TransportMaps-1.0b2 copying requirements-PLOT.txt -> TransportMaps-1.0b2 copying requirements-SPHINX.txt -> TransportMaps-1.0b2 copying requirements.txt -> TransportMaps-1.0b2 copying setup.cfg -> TransportMaps-1.0b2 copying setup.py -> TransportMaps-1.0b2 copying Docs/conf3/conf.py -> TransportMaps-1.0b2/Docs/conf3 copying Docs/make3/Makefile -> TransportMaps-1.0b2/Docs/make3 copying Docs/make3/build-api -> TransportMaps-1.0b2/Docs/make3 copying Docs/make3/checklinks.sh -> TransportMaps-1.0b2/Docs/make3 copying Docs/make3/run-autosummary.sh.deprec -> TransportMaps-1.0b2/Docs/make3 copying Docs/source/aa-references.rst -> TransportMaps-1.0b2/Docs/source copying Docs/source/credits.rst -> TransportMaps-1.0b2/Docs/source copying Docs/source/example-BOD-4d.ipynb -> TransportMaps-1.0b2/Docs/source copying Docs/source/example-banana-2d.ipynb -> TransportMaps-1.0b2/Docs/source copying Docs/source/example-beta-1d.ipynb -> TransportMaps-1.0b2/Docs/source copying Docs/source/example-gumbel-1d.ipynb -> TransportMaps-1.0b2/Docs/source copying Docs/source/example-inverse-gumbel-1d.ipynb -> TransportMaps-1.0b2/Docs/source copying Docs/source/example-inverse-stochastic-volatility-6d.ipynb -> TransportMaps-1.0b2/Docs/source copying Docs/source/example-sequential-stocvol-6d.ipynb -> TransportMaps-1.0b2/Docs/source copying Docs/source/examples-direct-transport.rst -> TransportMaps-1.0b2/Docs/source copying Docs/source/examples-inverse-transport-from-density.rst -> TransportMaps-1.0b2/Docs/source copying Docs/source/examples-transport-from-samples.rst -> TransportMaps-1.0b2/Docs/source copying Docs/source/examples.rst -> TransportMaps-1.0b2/Docs/source copying Docs/source/index.rst -> TransportMaps-1.0b2/Docs/source copying Docs/source/install.rst -> TransportMaps-1.0b2/Docs/source copying Docs/source/linking.rst -> TransportMaps-1.0b2/Docs/source copying Docs/source/map-from-samples.ipynb -> TransportMaps-1.0b2/Docs/source copying Docs/source/mpi-usage.ipynb -> TransportMaps-1.0b2/Docs/source copying Docs/source/pm-bayesian-inference.ipynb -> TransportMaps-1.0b2/Docs/source copying Docs/source/pm-data-assimilation.ipynb -> TransportMaps-1.0b2/Docs/source copying Docs/source/pm-distributions.ipynb -> TransportMaps-1.0b2/Docs/source copying Docs/source/statistical-models.rst -> TransportMaps-1.0b2/Docs/source copying Docs/source/summary.rst -> TransportMaps-1.0b2/Docs/source copying Docs/source/tutorial.rst -> TransportMaps-1.0b2/Docs/source copying Docs/source/xml-descriptors.ipynb -> TransportMaps-1.0b2/Docs/source copying Docs/source/Figures/DensityTransform.svg -> TransportMaps-1.0b2/Docs/source/Figures copying Docs/source/Figures/MPI-star-structure.png -> TransportMaps-1.0b2/Docs/source/Figures copying Docs/source/Figures/SG-Transform.svg -> 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Docs/source/Figures/flowchart.pdf -> TransportMaps-1.0b2/Docs/source/Figures copying Docs/source/Figures/flowchart.png -> TransportMaps-1.0b2/Docs/source/Figures copying Docs/source/Figures/inv-sparsity.svg -> TransportMaps-1.0b2/Docs/source/Figures copying Docs/source/Figures/mpi_eval-distributed-memory.png -> TransportMaps-1.0b2/Docs/source/Figures copying Docs/source/Figures/mpi_eval-simple.png -> TransportMaps-1.0b2/Docs/source/Figures copying Docs/source/Figures/BOD/BOD_test_bottles.jpg -> TransportMaps-1.0b2/Docs/source/Figures/BOD copying Docs/source/Figures/BOD/Influent_raw_wastewater.jpg -> TransportMaps-1.0b2/Docs/source/Figures/BOD copying Docs/source/Figures/BOD/Marlborough_East_Wastewater_Treatment_Plant_Aerial.JPG -> TransportMaps-1.0b2/Docs/source/Figures/BOD copying Docs/source/Figures/BOD/PatchWork.png -> TransportMaps-1.0b2/Docs/source/Figures/BOD copying Docs/source/Figures/BOD/PatchWork.xcf -> TransportMaps-1.0b2/Docs/source/Figures/BOD copying 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copying Docs/source/Figures/working/inv-sparsity/inv-sparsity.tex -> TransportMaps-1.0b2/Docs/source/Figures/working/inv-sparsity copying Docs/source/Figures/working/inv-sparsity/optionsDecompositionGraphs.tex -> TransportMaps-1.0b2/Docs/source/Figures/working/inv-sparsity copying Docs/source/Figures/working/inv-sparsity/stylesTikzGraphs.tex -> TransportMaps-1.0b2/Docs/source/Figures/working/inv-sparsity copying Docs/source/Figures/working/inv-sparsity/tikz_sparsityVolHyper.tex -> TransportMaps-1.0b2/Docs/source/Figures/working/inv-sparsity copying Docs/source/aux/inv-stocvol/Distribution.dill -> TransportMaps-1.0b2/Docs/source/aux/inv-stocvol copying Docs/source/aux/inv-stocvol/DistributionGeneration.py -> TransportMaps-1.0b2/Docs/source/aux/inv-stocvol copying Docs/source/aux/inv-stocvol/Sequential-IntSq-Postprocess.dill -> TransportMaps-1.0b2/Docs/source/aux/inv-stocvol copying Docs/source/aux/inv-stocvol/Sequential-IntSq-Postprocess.dill.hdf5 -> TransportMaps-1.0b2/Docs/source/aux/inv-stocvol copying Docs/source/aux/inv-stocvol/Sequential-IntSq.dill -> TransportMaps-1.0b2/Docs/source/aux/inv-stocvol copying Docs/source/aux/xml/BODmap.xml -> TransportMaps-1.0b2/Docs/source/aux/xml copying Docs/source/aux/xml/IntSqSecOrd.xml -> TransportMaps-1.0b2/Docs/source/aux/xml copying Docs/source/aux/xml/IntSqSecOrdHead.xml -> TransportMaps-1.0b2/Docs/source/aux/xml copying Docs/source/aux/xml/LinearSpan.xml -> TransportMaps-1.0b2/Docs/source/aux/xml copying Docs/source/cli/Sequential-IntSq-aligned-conditionals-approx-base.svg -> TransportMaps-1.0b2/Docs/source/cli copying Docs/source/cli/Sequential-IntSq-aligned-marginals-approx-target.svg -> TransportMaps-1.0b2/Docs/source/cli copying Docs/source/cli/Sequential-IntSq-filtering-conditionals-0.svg -> TransportMaps-1.0b2/Docs/source/cli copying Docs/source/cli/Sequential-IntSq-filtering-conditionals-1.svg -> TransportMaps-1.0b2/Docs/source/cli copying Docs/source/cli/Sequential-IntSq-filtering-conditionals-2.svg -> TransportMaps-1.0b2/Docs/source/cli copying Docs/source/cli/Sequential-IntSq-filtering-conditionals-3.svg -> TransportMaps-1.0b2/Docs/source/cli copying Docs/source/cli/Sequential-IntSq-filtering-marginals-0.svg -> TransportMaps-1.0b2/Docs/source/cli copying Docs/source/cli/Sequential-IntSq-filtering-marginals-1.svg -> TransportMaps-1.0b2/Docs/source/cli copying Docs/source/cli/Sequential-IntSq-filtering-marginals-2.svg -> TransportMaps-1.0b2/Docs/source/cli copying Docs/source/cli/Sequential-IntSq-filtering-marginals-3.svg -> TransportMaps-1.0b2/Docs/source/cli copying Docs/source/cli/Sequential-IntSq-metropolis-ess.svg -> TransportMaps-1.0b2/Docs/source/cli copying Docs/source/cli/Sequential-IntSq-random-conditionals-approx-base.svg -> TransportMaps-1.0b2/Docs/source/cli copying Docs/source/cli/cli.ipynb -> TransportMaps-1.0b2/Docs/source/cli copying Examples/stable/BODmodel/DataGeneration.py -> TransportMaps-1.0b2/Examples/stable/BODmodel copying Examples/stable/CPP-Module/KLdivergence-InverseMap-InverseConstruction.py -> TransportMaps-1.0b2/Examples/stable/CPP-Module copying Examples/stable/CPP-Module/xun/setup.py -> TransportMaps-1.0b2/Examples/stable/CPP-Module/xun copying Examples/stable/CPP-Module/xun/tests/test.py -> TransportMaps-1.0b2/Examples/stable/CPP-Module/xun/tests copying Examples/stable/StochasticVolatility/DataGeneration.py -> TransportMaps-1.0b2/Examples/stable/StochasticVolatility copying Examples/stable/StochasticVolatility/PlotExchanges.py -> TransportMaps-1.0b2/Examples/stable/StochasticVolatility copying Examples/stable/StochasticVolatility/mcmc.py -> TransportMaps-1.0b2/Examples/stable/StochasticVolatility copying Examples/stable/StochasticVolatility/postprocess-plotting.py -> TransportMaps-1.0b2/Examples/stable/StochasticVolatility copying Examples/stable/TestDistributions/KLdivergence-InverseMap-DirectConstruction-ByStep.py -> TransportMaps-1.0b2/Examples/stable/TestDistributions copying Examples/stable/TestDistributions/KLdivergence-InverseMap-DirectConstruction.py -> TransportMaps-1.0b2/Examples/stable/TestDistributions copying Examples/stable/TestDistributions/KLdivergence-InverseMap-InverseConstruction.py -> TransportMaps-1.0b2/Examples/stable/TestDistributions copying Examples/stable/TestDistributions/KLdivergence.py -> TransportMaps-1.0b2/Examples/stable/TestDistributions copying Examples/stable/TestDistributions/Regression.py -> TransportMaps-1.0b2/Examples/stable/TestDistributions copying Examples/stable/cluster/voyager/run_unit_tests.py -> TransportMaps-1.0b2/Examples/stable/cluster/voyager copying TransportMaps/Defaults.py -> TransportMaps-1.0b2/TransportMaps copying TransportMaps/External.py -> TransportMaps-1.0b2/TransportMaps copying TransportMaps/FiniteDifference.py -> TransportMaps-1.0b2/TransportMaps copying TransportMaps/Misc.py -> TransportMaps-1.0b2/TransportMaps copying TransportMaps/ObjectBase.py -> TransportMaps-1.0b2/TransportMaps copying TransportMaps/Routines.py -> TransportMaps-1.0b2/TransportMaps copying TransportMaps/__init__.py -> TransportMaps-1.0b2/TransportMaps copying TransportMaps/_version.py -> TransportMaps-1.0b2/TransportMaps copying TransportMaps.egg-info/PKG-INFO -> TransportMaps-1.0b2/TransportMaps.egg-info copying TransportMaps.egg-info/SOURCES.txt -> TransportMaps-1.0b2/TransportMaps.egg-info copying TransportMaps.egg-info/dependency_links.txt -> TransportMaps-1.0b2/TransportMaps.egg-info copying TransportMaps.egg-info/not-zip-safe -> TransportMaps-1.0b2/TransportMaps.egg-info copying TransportMaps.egg-info/requires.txt -> TransportMaps-1.0b2/TransportMaps.egg-info copying TransportMaps.egg-info/top_level.txt -> TransportMaps-1.0b2/TransportMaps.egg-info copying TransportMaps/Algorithms/__init__.py -> TransportMaps-1.0b2/TransportMaps/Algorithms copying TransportMaps/Algorithms/Adaptivity/AdaptivityBase.py -> TransportMaps-1.0b2/TransportMaps/Algorithms/Adaptivity copying TransportMaps/Algorithms/Adaptivity/KullbackLeiblerAdaptivity.py -> TransportMaps-1.0b2/TransportMaps/Algorithms/Adaptivity copying TransportMaps/Algorithms/Adaptivity/RegressionAdaptivity.py -> TransportMaps-1.0b2/TransportMaps/Algorithms/Adaptivity copying TransportMaps/Algorithms/Adaptivity/__init__.py -> TransportMaps-1.0b2/TransportMaps/Algorithms/Adaptivity copying TransportMaps/Algorithms/SequentialInference/LinearSequentialInference.py -> TransportMaps-1.0b2/TransportMaps/Algorithms/SequentialInference copying TransportMaps/Algorithms/SequentialInference/NonLinearSequentialInference.py -> TransportMaps-1.0b2/TransportMaps/Algorithms/SequentialInference copying TransportMaps/Algorithms/SequentialInference/SequentialInferenceBase.py -> TransportMaps-1.0b2/TransportMaps/Algorithms/SequentialInference copying TransportMaps/Algorithms/SequentialInference/__init__.py -> TransportMaps-1.0b2/TransportMaps/Algorithms/SequentialInference copying TransportMaps/CLI/AvailableOptions.py -> TransportMaps-1.0b2/TransportMaps/CLI copying TransportMaps/CLI/PostprocessBase.py -> TransportMaps-1.0b2/TransportMaps/CLI copying TransportMaps/CLI/ScriptBase.py -> TransportMaps-1.0b2/TransportMaps/CLI copying TransportMaps/CLI/SequentialPostprocessBase.py -> TransportMaps-1.0b2/TransportMaps/CLI copying TransportMaps/CLI/__init__.py -> TransportMaps-1.0b2/TransportMaps/CLI copying TransportMaps/Densities/Densities.py -> TransportMaps-1.0b2/TransportMaps/Densities copying TransportMaps/Densities/__init__.py -> TransportMaps-1.0b2/TransportMaps/Densities copying TransportMaps/Densities/Decomposable/SequentialInferenceDensities.py -> TransportMaps-1.0b2/TransportMaps/Densities/Decomposable copying TransportMaps/Densities/Decomposable/__init__.py -> TransportMaps-1.0b2/TransportMaps/Densities/Decomposable copying TransportMaps/Densities/Inference/InferenceBase.py -> TransportMaps-1.0b2/TransportMaps/Densities/Inference copying TransportMaps/Densities/Inference/__init__.py -> TransportMaps-1.0b2/TransportMaps/Densities/Inference copying TransportMaps/Diagnostics/Plotting.py -> TransportMaps-1.0b2/TransportMaps/Diagnostics copying TransportMaps/Diagnostics/Routines.py -> TransportMaps-1.0b2/TransportMaps/Diagnostics copying TransportMaps/Diagnostics/__init__.py -> TransportMaps-1.0b2/TransportMaps/Diagnostics copying TransportMaps/Distributions/ConditionalDistributions.py -> TransportMaps-1.0b2/TransportMaps/Distributions copying TransportMaps/Distributions/DistributionBase.py -> TransportMaps-1.0b2/TransportMaps/Distributions copying TransportMaps/Distributions/FrozenDistributions.py -> TransportMaps-1.0b2/TransportMaps/Distributions copying TransportMaps/Distributions/ParametricDistributionBase.py -> TransportMaps-1.0b2/TransportMaps/Distributions copying TransportMaps/Distributions/TransportMapDistributions.py -> TransportMaps-1.0b2/TransportMaps/Distributions copying TransportMaps/Distributions/__init__.py -> TransportMaps-1.0b2/TransportMaps/Distributions copying TransportMaps/Distributions/Decomposable/LinearGaussianSequentialInferenceDistributions.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Decomposable copying TransportMaps/Distributions/Decomposable/SequentialInferenceDistributions.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Decomposable copying TransportMaps/Distributions/Decomposable/__init__.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Decomposable copying TransportMaps/Distributions/Examples/SimpleDistributions.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Examples copying TransportMaps/Distributions/Examples/__init__.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Examples copying TransportMaps/Distributions/Examples/BiochemicalOxigenDemand/BODDistributions.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Examples/BiochemicalOxigenDemand copying TransportMaps/Distributions/Examples/BiochemicalOxigenDemand/__init__.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Examples/BiochemicalOxigenDemand copying TransportMaps/Distributions/Examples/InertialNavigationSystem/INSDistributions.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Examples/InertialNavigationSystem copying TransportMaps/Distributions/Examples/InertialNavigationSystem/__init__.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Examples/InertialNavigationSystem copying TransportMaps/Distributions/Examples/LogGaussianCoxProcess/__init__.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Examples/LogGaussianCoxProcess copying TransportMaps/Distributions/Examples/RailwayVehicleDynamics/__init__.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Examples/RailwayVehicleDynamics copying TransportMaps/Distributions/Examples/RailwayVehicleDynamics/Coradia175/Coradia175VehicleParametersEstimation.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Examples/RailwayVehicleDynamics/Coradia175 copying TransportMaps/Distributions/Examples/RailwayVehicleDynamics/Coradia175/Coradia175VehicleStateSpace.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Examples/RailwayVehicleDynamics/Coradia175 copying TransportMaps/Distributions/Examples/RailwayVehicleDynamics/Coradia175/__init__.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Examples/RailwayVehicleDynamics/Coradia175 copying TransportMaps/Distributions/Examples/ScalarLinearGaussMarkovProcess/Distributions.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Examples/ScalarLinearGaussMarkovProcess copying TransportMaps/Distributions/Examples/ScalarLinearGaussMarkovProcess/__init__.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Examples/ScalarLinearGaussMarkovProcess copying TransportMaps/Distributions/Examples/StochasticVolatility/StocVolHyperDistributions.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Examples/StochasticVolatility copying TransportMaps/Distributions/Examples/StochasticVolatility/__init__.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Examples/StochasticVolatility copying TransportMaps/Distributions/Inference/InferenceBase.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Inference copying TransportMaps/Distributions/Inference/__init__.py -> TransportMaps-1.0b2/TransportMaps/Distributions/Inference copying TransportMaps/Functionals/AlgebraicLinearSpanApproximations.py -> TransportMaps-1.0b2/TransportMaps/Functionals copying TransportMaps/Functionals/FrozenMonotonicFunctions.py -> TransportMaps-1.0b2/TransportMaps/Functionals copying TransportMaps/Functionals/FunctionBase.py -> TransportMaps-1.0b2/TransportMaps/Functionals copying TransportMaps/Functionals/LinearSpanApproximationBase.py -> TransportMaps-1.0b2/TransportMaps/Functionals copying TransportMaps/Functionals/MonotonicFunctionApproximations.py -> TransportMaps-1.0b2/TransportMaps/Functionals copying TransportMaps/Functionals/ParametricFunctionApproximationBase.py -> TransportMaps-1.0b2/TransportMaps/Functionals copying TransportMaps/Functionals/ProductDistributionParametricPullbackComponentFunctionBase.py -> TransportMaps-1.0b2/TransportMaps/Functionals copying TransportMaps/Functionals/__init__.py -> TransportMaps-1.0b2/TransportMaps/Functionals copying TransportMaps/Likelihoods/LikelihoodBase.py -> TransportMaps-1.0b2/TransportMaps/Likelihoods copying TransportMaps/Likelihoods/__init__.py -> TransportMaps-1.0b2/TransportMaps/Likelihoods copying TransportMaps/Maps/FrozenTriangularTransportMaps.py -> TransportMaps-1.0b2/TransportMaps/Maps copying TransportMaps/Maps/FullTransportMaps.py -> TransportMaps-1.0b2/TransportMaps/Maps copying TransportMaps/Maps/MapBase.py -> TransportMaps-1.0b2/TransportMaps/Maps copying TransportMaps/Maps/SimpleTransportMaps.py -> TransportMaps-1.0b2/TransportMaps/Maps copying TransportMaps/Maps/TransportMapBase.py -> TransportMaps-1.0b2/TransportMaps/Maps copying TransportMaps/Maps/TriangularTransportMapBase.py -> TransportMaps-1.0b2/TransportMaps/Maps copying TransportMaps/Maps/TriangularTransportMaps.py -> TransportMaps-1.0b2/TransportMaps/Maps copying TransportMaps/Maps/__init__.py -> TransportMaps-1.0b2/TransportMaps/Maps copying TransportMaps/Maps/Decomposable/SequentialInferenceMaps.py -> TransportMaps-1.0b2/TransportMaps/Maps/Decomposable copying TransportMaps/Maps/Decomposable/__init__.py -> TransportMaps-1.0b2/TransportMaps/Maps/Decomposable copying TransportMaps/Optimization/Optimizers.py -> TransportMaps-1.0b2/TransportMaps/Optimization copying TransportMaps/Optimization/__init__.py -> TransportMaps-1.0b2/TransportMaps/Optimization copying TransportMaps/Samplers/IndependentSamplers.py -> TransportMaps-1.0b2/TransportMaps/Samplers copying TransportMaps/Samplers/MarkovChainSamplers.py -> TransportMaps-1.0b2/TransportMaps/Samplers copying TransportMaps/Samplers/Routines.py -> TransportMaps-1.0b2/TransportMaps/Samplers copying TransportMaps/Samplers/SamplerBase.py -> TransportMaps-1.0b2/TransportMaps/Samplers copying TransportMaps/Samplers/__init__.py -> TransportMaps-1.0b2/TransportMaps/Samplers copying TransportMaps/XML/Parser.py -> TransportMaps-1.0b2/TransportMaps/XML copying TransportMaps/XML/__init__.py -> TransportMaps-1.0b2/TransportMaps/XML copying TransportMaps/XML/schema/map.xsd -> TransportMaps-1.0b2/TransportMaps/XML/schema copying TransportMaps/tests/TestFunctions.py -> TransportMaps-1.0b2/TransportMaps/tests copying TransportMaps/tests/__init__.py -> TransportMaps-1.0b2/TransportMaps/tests copying TransportMaps/tests/test_L2_minimization.py -> TransportMaps-1.0b2/TransportMaps/tests copying TransportMaps/tests/test_L2_misfit.py -> TransportMaps-1.0b2/TransportMaps/tests copying TransportMaps/tests/test_all.py -> TransportMaps-1.0b2/TransportMaps/tests copying TransportMaps/tests/test_distributions.py -> TransportMaps-1.0b2/TransportMaps/tests copying TransportMaps/tests/test_functions.py -> TransportMaps-1.0b2/TransportMaps/tests copying TransportMaps/tests/test_kl_divergence.py -> TransportMaps-1.0b2/TransportMaps/tests copying TransportMaps/tests/test_kl_minimization.py -> TransportMaps-1.0b2/TransportMaps/tests copying TransportMaps/tests/test_laplace.py -> TransportMaps-1.0b2/TransportMaps/tests copying TransportMaps/tests/test_scripts.py -> TransportMaps-1.0b2/TransportMaps/tests copying TransportMaps/tests/test_sequential_inference.py -> TransportMaps-1.0b2/TransportMaps/tests copying TransportMaps/tests/test_transportmap_distributions.py -> TransportMaps-1.0b2/TransportMaps/tests copying TransportMaps/tests/test_transportmap_distributions_sampling.py -> TransportMaps-1.0b2/TransportMaps/tests copying TransportMaps/tests/test_transportmaps.py -> TransportMaps-1.0b2/TransportMaps/tests copying TransportMaps/tests/test_xml.py -> TransportMaps-1.0b2/TransportMaps/tests copying TransportMaps/tests/xml/maps/FullOrdIntExpLinearMap_5d.xml -> TransportMaps-1.0b2/TransportMaps/tests/xml/maps copying TransportMaps/tests/xml/maps/FullOrdIntExpNonLinearHeadMap_5d.xml -> TransportMaps-1.0b2/TransportMaps/tests/xml/maps copying TransportMaps/tests/xml/maps/FullOrdIntExpNonLinearMap_5d.xml -> TransportMaps-1.0b2/TransportMaps/tests/xml/maps copying TransportMaps/tests/xml/maps/FullOrdIntExpTriDiagonalMap_5d.xml -> TransportMaps-1.0b2/TransportMaps/tests/xml/maps copying TransportMaps/tests/xml/maps/FullOrdMonotLinearSpanLinearMap_5d.xml -> TransportMaps-1.0b2/TransportMaps/tests/xml/maps copying TransportMaps/tests/xml/maps/MultiIdxMonotLinearSpanLinearMap_5d.xml -> TransportMaps-1.0b2/TransportMaps/tests/xml/maps copying TransportMaps/tests/xml/maps/TotalOrdIntExpDiagonalMap_5d.xml -> TransportMaps-1.0b2/TransportMaps/tests/xml/maps copying TransportMaps/tests/xml/maps/TotalOrdIntExpLinearMap_5d.xml -> TransportMaps-1.0b2/TransportMaps/tests/xml/maps copying TransportMaps/tests/xml/maps/TotalOrdIntExpNonLinearHeadMap_5d.xml -> TransportMaps-1.0b2/TransportMaps/tests/xml/maps copying TransportMaps/tests/xml/maps/TotalOrdIntExpNonLinearMap_5d.xml -> TransportMaps-1.0b2/TransportMaps/tests/xml/maps copying TransportMaps/tests/xml/maps/TotalOrdIntExpNonLinearRBFMap_5d.xml -> TransportMaps-1.0b2/TransportMaps/tests/xml/maps copying TransportMaps/tests/xml/maps/TotalOrdIntExpTriDiagonalMap_5d.xml -> TransportMaps-1.0b2/TransportMaps/tests/xml/maps copying TransportMaps/tests/xml/maps/TotalOrdIntSqLinearMap_5d.xml -> TransportMaps-1.0b2/TransportMaps/tests/xml/maps copying TransportMaps/tests/xml/maps/TotalOrdIntSqNonLinearHeadMap_5d.xml -> TransportMaps-1.0b2/TransportMaps/tests/xml/maps copying TransportMaps/tests/xml/maps/TotalOrdMonotLinearSpanLinearMap_5d.xml -> TransportMaps-1.0b2/TransportMaps/tests/xml/maps copying scripts/tmap-laplace -> TransportMaps-1.0b2/scripts copying scripts/tmap-max-likelihood -> TransportMaps-1.0b2/scripts copying scripts/tmap-postprocess -> TransportMaps-1.0b2/scripts copying scripts/tmap-sequential-postprocess -> TransportMaps-1.0b2/scripts copying scripts/tmap-sequential-tm -> TransportMaps-1.0b2/scripts copying scripts/tmap-tm -> TransportMaps-1.0b2/scripts Writing TransportMaps-1.0b2/setup.cfg Creating tar archive removing 'TransportMaps-1.0b2' (and everything under it) + cd tmp_sdist + echo Installing Installing ++ ls + INSTALLER=TransportMaps-1.0b2.tar.gz + PIP_FLAGS=--no-cache-dir + CC=clang + MPI=False + H5PY=True + python /Users/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/macys/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/bin/pip install --upgrade TransportMaps-1.0b2.tar.gz Processing ./TransportMaps-1.0b2.tar.gz Requirement already up-to-date: numpy in /Users/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/macys/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/lib/python2.7/site-packages (from TransportMaps==1.0b2) Collecting orthpol_light>=1.0.1 (from TransportMaps==1.0b2) /Users/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/macys/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/lib/python2.7/site-packages/pip/_vendor/requests/packages/urllib3/util/ssl_.py:318: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/security.html#snimissingwarning. SNIMissingWarning /Users/jenkins/workspace/TransportMaps-private-master/COMPILER/clang/MACHINE/macys/PYTHON_EXE/python2/VENV_SYS/virtualenv/venv_TransportMaps-private-master_python2/lib/python2.7/site-packages/pip/_vendor/requests/packages/urllib3/util/ssl_.py:122: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/security.html#insecureplatformwarning. InsecurePlatformWarning Collecting scipy (from TransportMaps==1.0b2) Using cached scipy-1.0.0-cp27-cp27m-macosx_10_6_intel.macosx_10_9_intel.macosx_10_9_x86_64.macosx_10_10_intel.macosx_10_10_x86_64.whl Collecting SpectralToolbox>=1.0.4 (from TransportMaps==1.0b2) Using cached SpectralToolbox-1.0.7.tar.gz Collecting dill (from TransportMaps==1.0b2) Collecting statsmodels (from TransportMaps==1.0b2) Using cached statsmodels-0.8.0-cp27-cp27m-macosx_10_6_intel.macosx_10_9_intel.macosx_10_9_x86_64.macosx_10_10_intel.macosx_10_10_x86_64.whl Collecting pyhmc (from TransportMaps==1.0b2) Using cached pyhmc-0.1.2.tar.gz Complete output from command python setup.py egg_info: Traceback (most recent call last): File "<string>", line 1, in <module> File "/private/var/folders/wp/20zl4b2n0qxcrp90f31275f80000gp/T/pip-build-RbHsuk/pyhmc/setup.py", line 29, in <module> from Cython.Distutils import build_ext ImportError: No module named Cython.Distutils ---------------------------------------- Command "python setup.py egg_info" failed with error code 1 in /private/var/folders/wp/20zl4b2n0qxcrp90f31275f80000gp/T/pip-build-RbHsuk/pyhmc/ Build step 'Execute shell' marked build as failure [WS-CLEANUP] Deleting project workspace...[WS-CLEANUP] Skipped based on build state FAILURE Finished: FAILURE